LOCUS       DAZBIH010000001        47304 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.001, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000001 DAZBIH010000000
VERSION     DAZBIH010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 47304)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 47304)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..47304
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.001"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..734)
                     /gene="truB"
                     /locus_tag="ACHFOB_000001"
     CDS             complement(<1..734)
                     /gene="truB"
                     /locus_tag="ACHFOB_000001"
                     /EC_number="5.4.99.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HFN5798851.1"
                     /translation="MNKIFAAFKPRGLSSNAFLSTLKKKYKNKKAGYSGTLDPFAKGV
                     LIVAFGQYTKLFRFLKKTPKTYKATLWLGVYSLSLDDQNIKEIQNIKEFDLANLQQII
                     DQMQGIISYTPPQFSAKRINGTRAYELAKKGIEANLKPCQMEVFDCKILSYNHPFLNI
                     EITVSEGAYIRSYCELFARKLGINATLSSLERIKEGKFVYNNEKSLNVLKYIDLKPNF
                     IKELNKLENGAKIFVEELEFHDEGDY"
     gene            complement(731..2806)
                     /locus_tag="ACHFOB_000002"
     CDS             complement(731..2806)
                     /locus_tag="ACHFOB_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN5798852.1"
                     /translation="MNLFEDLNDSQKQAVSHIDGAMLILAGAGSGKTKTITTRLAYLI
                     GEVGIPSHNTLTLTFTNKAANVMRHRALNFLQGNHNPLLCTFHKFGLLFLKLHFERLE
                     RKNSFIVIDTDDTKKIIKDLIHDKNKDNVYDIIQYISYCKNEGKRVSNVFEDLNLLKE
                     HNFEKYQNEYKFANYYRAYEEYLLKQNFVDFDDLLLLSNLILENDINFAKEQSLLYNY
                     ITVDEYQDTNTLQYKILKNLCCMHENITVVGDDDQSIYSWRGAKIENILNFQNDFKNV
                     KLVKLEQNYRSVGTILQAANNLISHNEQRLGKTLICTKDTGENIKILKNENEKDEGLY
                     IAQEVKKLLNSGVEAKEIAILFRVNALSRAIEEAFMKKQISYKLLSGMRFYERLEIKD
                     LISYLRLILNPSDDLSFKRIINRPKRSIGEKALKNLEEYAKKRQISLFDALCESDGGV
                     GILTTKKAQNEANIFIQNIHTLKSYDNAKKVFDNIEELFKIKDYFSEQDDGDERIRNL
                     DEFYANLREKLKEDPEASLEDLLSEISLLSDQDNLDEECVCLMSIHASKGLEFDYVFI
                     IGFDEGFFPLNSEENLEEERRLAYVAITRAKKLLTISVANSRFYHGSRANINPSRFLE
                     ESKLINEKSKNQNIQKTSFCKGDLVKHKIFGIGRVVEVNKSGKEEKLNINFGGIMRVI
                     MASFVEKAV"
     gene            complement(2803..3240)
                     /locus_tag="ACHFOB_000003"
     CDS             complement(2803..3240)
                     /locus_tag="ACHFOB_000003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798853.1"
                     /translation="MLETILKNENFIHTMQKHCYEVISHLIEENIEFSIVANTNFIDF
                     NPELPKELDIKQNPYALFALGGYTFESIQLNKDFIQFHAGFGNDDFDSFVKVDLGAIT
                     QIQVENSILFVNFSLYKREDSKNLQKSKNIFLNNPKNKDIFKK"
     gene            complement(3234..4955)
                     /locus_tag="ACHFOB_000004"
     CDS             complement(3234..4955)
                     /locus_tag="ACHFOB_000004"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HFN5798854.1"
                     /translation="MLEWDLSALFHDKEALQNFTQDQIQQSLNFKKNYENKLYTLDAN
                     EFLQALKDYENLNQALGKIMTYAYLLFAKNTQNGSFYAQYEEECKKIEENLLFFELEF
                     CELAPEKSQEFTTFCKDYDFYLSNLLQNKRYNLSKNEERIMLYLSNTGANAFSRLFDE
                     SMSALKIPFEGKKLSEEEILSKMYDEDRKIRKKAAKKFSKVLQKNSRLLSFIINMIKT
                     ERKNISLLRGYENAEISRHISNQISQKSVDSLIASAQKHFNLVSQFYKRKKQILGYDE
                     LKDYDRYAPIGKEASFDFKTSKNIVLEAFQAFSPQFYDIAKNAFDQGWIDVYPQENKQ
                     GGAFSHSATSDAHPFVLLNYTNKRRDLFTLAHELGHTIHQKLSYHVSYLNQNTPLTTA
                     ETASVFAEMLVFDFIKDKLKKEELLSLYANKIEDIFATFYRQINFTCFERRLHAQENE
                     LSTEEINKIWMEESQKMFQDSVKLTKNYASWWSYIPHFIHSPFYCYAYAYAQLLVLAL
                     YGLYKSKKCENFKELYIKMLSLGGSVSPKELVGMFGFDIEDENFWEIGIKEIQKLINE
                     FMELQSC"
     gene            complement(4959..5846)
                     /locus_tag="ACHFOB_000005"
     CDS             complement(4959..5846)
                     /locus_tag="ACHFOB_000005"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0016597 - amino acid binding [Evidence
                     IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HFN5798855.1"
                     /translation="MRHLITAKDFNKVEIMELFKEASDFLDEKPRTFLKGKSITTIFF
                     ENSTRTLSSFESAARRLGARVLRLDVSRSSSSKGETLYDTAANLDAMSPNAIVVRHAN
                     SGVPLILAKHMHCPVVNGGDGKHAHPTQALLDLFTIYNHFQGDVEGKKICIVGDIKNS
                     RVAASNIELLSRFNLDITLVAPPHFMPNTHLKKHYKLDENIIANSDIIMSLRTQTERH
                     NKTVYASLKDYANDFCIQKSLVKDKKLILLHPGPVNRNIDISDEMMSDERTLVLKQVK
                     NGVAIRMAVLKKLILENEG"
     gene            complement(5856..7079)
                     /gene="sstT"
                     /locus_tag="ACHFOB_000006"
     CDS             complement(5856..7079)
                     /gene="sstT"
                     /locus_tag="ACHFOB_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0015826 - threonine transport [Evidence
                     IEA];
                     GO_process: GO:0032329 - serine transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine transporter SstT"
                     /protein_id="HFN5798856.1"
                     /translation="MFSKIIQSYAKGNLIVQICIGIVLGILIGISSKEISEIANLLGI
                     LFTSALKAIAPMLVFILILTSICTKDFSQSGAKIKNIIILYIVGTFLASACAVLANFF
                     FPVKLVLDGVQTATNSSPTHMSEIFKDLLFKIVDNPINALSSGNYLGILTWAIAGGIA
                     LKHCSNEAKQVFIDINEGVLKIVKFVVKLAPFGIFGLVANSVAQTGAQGLLSYVKLLI
                     LLVATMLFVTFVINALIVFFYTRKNPFPLIFICLRHSAFFAFFTRSSAANIPVNMALC
                     AKLGIDKEFYGISIPLGATINMAGAAVTIAILSLTAANTVGIEISLLQAFLLSIIATF
                     AACGASGVAGGSLLLIPLACSLFNIDYDIAMKVVAIGFIIGVIQDSVETALNSSTDVL
                     FTAICSKNELNYNIK"
     gene            7219..8415
                     /gene="metK"
                     /locus_tag="ACHFOB_000007"
     CDS             7219..8415
                     /gene="metK"
                     /locus_tag="ACHFOB_000007"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HFN5798857.1"
                     /translation="MYLFTSEVVSAGHPDKCADIIADTIVDILLKNDKNSRVASEVFV
                     AGNKVVIGGEVKSNHKLSKADYDNLVKDVLKNIGYDGAGHFSKEQCLHPDEVDVMVFL
                     NEQSPDINQGVDQEDGETGAGDQGIMFGFASCEAEEYMPAAISYARMLCDRVYAYAKA
                     NPHELGVDIKTQVTIDYGTKANFENCKPQSIHTIVVSAPCVESMKIEDLRSLVMKLIL
                     DSNLPKELFDPNKTRILINPTGKYVNHSSLHDSGLTGRKLIVDSFGGYSPIGGGAQSS
                     KDYTKVDRSGLYAGRWLAKNIVAAGLAKKCIVQLSYAIGVAKPTSVSVDCMGTNTSVN
                     DDVLSDFVMQNFSLTPNWIRDKFHLDKPSKETFLYADVAARGQVGQKDYPWEKLDALE
                     QFKKLL"
     gene            complement(8652..9977)
                     /locus_tag="ACHFOB_000008"
     CDS             complement(8652..9977)
                     /locus_tag="ACHFOB_000008"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="apolipoprotein N-acyltransferase"
                     /protein_id="HFN5798858.1"
                     /translation="MKLKLNFLPYFSFIPKKLNTNSIIFKIIKVFFIAILLSNSIYLS
                     FFENIFTQTISPFLAIWGLVLLLKSKTSKQYFWIGFFVGILWFWWIGLSSIYFNLNYL
                     VPIIPIIIGFIYGLLFRLCYLLKFDFLRLCGIFCISFIHPLGFDWFNWGIFTVYGFFD
                     PSYRGIICIFLIAYFIYEGYISRYYKIAIVLILFFSGFQYNEKQAQTLNLNYKLINTN
                     ISQDQKFLQENLKSNSDILIQDILQAINEKKELVILPETAFAFDLKNTKYELMLKELS
                     YKITIITGAFHVEKEHTYNSTYIFKKGNVYILNKHFLVPFGEEIPFFKDLTKKYFLKN
                     IEEFSKGPIQSKYKLDNQIITNAICYEATKEQNYQNSQIIIALSNNAWFNNSSEYKLQ
                     QLLMKFYASKYGVSVYHATNGKENIVILPKKLLSKDWKNLSKEIFNDKK"
     gene            9950..10222
                     /gene="yajC"
                     /locus_tag="ACHFOB_000009"
     CDS             9950..10222
                     /gene="yajC"
                     /locus_tag="ACHFOB_000009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HFN5798859.1"
                     /translation="MAENSILTSLLPLVVLFAIFYFLVIRPQQKQAKAHKQMLESLQK
                     GDKIITNGGLICEVVKPEEDFIKVKLNEDNVTAKISREFIAKKIDA"
     gene            10215..11795
                     /gene="secD"
                     /locus_tag="ACHFOB_000010"
     CDS             10215..11795
                     /gene="secD"
                     /locus_tag="ACHFOB_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecD"
                     /protein_id="HFN5798860.1"
                     /translation="MRNSKINYRLIIFIAVFIFGVAFSLPSFLQSERGAKINLGLDLQ
                     GGLYMLLGVDNEEAVKSKIKSIASSLSYSFNKENILNDGLNTHDDILEFTLLDNADIA
                     KVENLLKEIKGINIQSENMHYKISFTSKEVKNIENFALLQAVETIRNRLDQFGLAEPT
                     VAKQGDDKILVELAGIKTKEDELRAKERITKAAHLQLMEVDDSKMGQASTMSDAEAAS
                     YGLILVPDSRNPNLKYTLKSIPILDGSMLTDARVGLSDKSNYPVINFTLNAEGSKKFA
                     DYTGANVGKRLAIVLDNKVYSAPSINERIGGGSGQISGAFTQEEARDVAVALRSGALL
                     APVKLLEQRSIGPSLGADSIKMSMIALIGASVFIVVFMMMYYGVAGIFANIAMLVNVL
                     VVVAVMAMFGATLTLPGMAGLVLTVGMAVDANVIINERIRELLRDGVNIRVSIEQGYK
                     NAMSAIIDSNITSLVTSVALYAYGTGAVKGFAVTLGIGIVVSMITAILGTHGMFDYFM
                     QRIEKNNNTRFWFGYRRR"
     gene            11795..12766
                     /gene="secF"
                     /locus_tag="ACHFOB_000011"
     CDS             11795..12766
                     /gene="secF"
                     /locus_tag="ACHFOB_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031522 - cell envelope Sec protein
                     transport complex [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecF"
                     /protein_id="HFN5798861.1"
                     /translation="MQFFSEKKIYDFMRMRFAAISLSFILFFGSIYLLWDRGLQYGID
                     FSGGTLVQLKYENAAPITQIREILENQGTFQNLSVTEFGSNEEVTIRFLGSNDNVSND
                     IGEHISTLLKDTGKFEVRRADVVGPKVGDELRNKGLMAIAVSLIAILIYIALRFEWRF
                     ALAAIISEIHDVVITLGAISLFKIDVNLDTLAAVLTVLGYSLNDTIIIFDRIREGIKT
                     SKKTELAPIINESVSATLSRTVLTSGLTLATVVILYFFGGEMIQGFSLALIVGIIAGT
                     LSSIFVASPTLLWFKFSVLEFRNKEIEKAKRKQDKERNRAMYEKGTV"
     gene            12776..15205
                     /gene="leuS"
                     /locus_tag="ACHFOB_000012"
     CDS             12776..15205
                     /gene="leuS"
                     /locus_tag="ACHFOB_000012"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HFN5798862.1"
                     /translation="MAYEASLIEKKWQKIWDENEYFEPKDDLNLPKKYILSMFPYPSG
                     RIHMGHVRNYTIGDALARYYRKIGFNVLHPIGFDSFGMPAENAAIKHKIHPKSWTYEN
                     IAYMKKELFSLGFSFSKKRMFATSDPLYTKFEQEFFIKMFEKGLIYTKEANVNWCEQD
                     QTVLANEQVEDGKCWRCGHEVVQKKMPGYYVKITAYAEELLKDLEELKDKWPNQVLTM
                     QENWIGKSEGLEFSLNLDEESKQKTKESSLEVFTTRADTIYGVSYIALAPEHKIVQNL
                     LSQNLLNQDVLNKIKVIQNQSPRERQSSEKEGYFLGIYAIHPLSGEKIPLWVANFVLA
                     DYGSGAVMAVPAHDERDFEFATKYNLAIKQVIQTQENLPYMQKLGKLINSQEFDNLDC
                     NEARLKIISQFEAKNIGKRVVNFKIRDWGVSRQRYWGAPIPMIKCQSCGIVPQKLENL
                     PITLPEDVQITGEGNPLDKHPTWKNCICPKCGKEAQKESDTLDTFFESSWYFARFASD
                     EKTWQEKALDEKSVKYWMSVDQYIGGIEHAILHLLYARFFQKALRDLGYLTQNEPFDR
                     LLTQGMVLKDGAKMSKSKGNVVDPDEIIEKYGADTARLFILFAAPPAKELEWNDDAVE
                     GAYRFICKLYDRAQNVKKGELVELKQENLNKEEKYARLKVYEALKKSFEVYHQSFAFN
                     TLIAACMEALNALALCKNEALEQEAFYIILNILEPIIPHVCFELSEELFKCKNFKKLE
                     LKEEVFVKDTLNLAVSINGKKRAEFEISSSASKEEILAFAKENTAKWLEGKSIVKEIY
                     VEGKLVNLVIK"
     gene            15202..15714
                     /gene="lptE"
                     /locus_tag="ACHFOB_000013"
     CDS             15202..15714
                     /gene="lptE"
                     /locus_tag="ACHFOB_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0043165 - Gram-negative-bacterium-type cell
                     outer membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS assembly lipoprotein LptE"
                     /protein_id="HFN5798863.1"
                     /translation="MKKILIFCIGLFLGACGYIPTSKIANNIFDEKVYVNVELSQQDP
                     KNSIYVADTLKEMVISKLGRKLALKHEADDVINVKMNNLEFIPLAYDKNGYVISYKAK
                     LNLDFNVVFKDGSSQAFSTSGSYNFEISPNSIISDSARYEAIRAASSEAFDEFISVIA
                     IKGQKRDSKY"
     gene            15698..17095
                     /locus_tag="ACHFOB_000014"
     CDS             15698..17095
                     /locus_tag="ACHFOB_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798864.1"
                     /translation="MIPNTNEIAKQTLIALKERKLKPTPENYTEIFEELSLKYGITSS
                     NKAKLDKYKTLLLPIYQQELNSKTIRSLEELISFLISVLNRQSGKQFSEFFDFLYTIS
                     KTLQISKDKKIRDLAKVTSIRISKTMDSESIYLLTKKWKELERNYDENDLEEQARKYG
                     ISKYDDYDSVIKKLLVKLEERSYEHFSELLCLGLNPSLVEDLKIQGFIQNLTQKPFVI
                     GEENFKNELMEFINHRIMVDNMYVQKNLNFFNDNLKKIYELLVLLNKSNEKNMDFINT
                     LKPDENGEVKLSFEDLKLKFKQLGEKITSLNNQIEFTQSLEEREAWSVLKELDKMDEN
                     FNKYKVNYSLALFSIVNYRFIMEKYGMGSLNEIFVRFKKILKDSCSEFDELWMIDEKS
                     YLIVSPGKSKDEITQLVNTNLKTIENFRFIYKQDIITPKIHVAYLDKQSKPSINILDE
                     LIKQIAAVNEQHNES"
     gene            17061..18245
                     /locus_tag="ACHFOB_000015"
     CDS             17061..18245
                     /locus_tag="ACHFOB_000015"
                     /EC_number="6.3.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004326 - tetrahydrofolylpolyglutamate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008841 - dihydrofolate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="folylpolyglutamate synthase/dihydrofolate
                     synthase family protein"
                     /protein_id="HFN5798865.1"
                     /translation="MQRLMNNIMKVENFLAQKSINYDKIDRFLMFRMYEKYKKYFKNI
                     PIIQLIGTNGKGSTGRYLTQLLENLNYKIGHYTSPHIFSFNERFYLDGKIANDEELEQ
                     AHIRLEEIFKQDLQKLSYFEYATFLAMILFQKCDFIVLEAGVGGEYDATSIFERRMSI
                     FTRIGFDHIQILGNSLEDIARTKLKVMAPIALISDEQEQNVLNLAKKIAFLKKANLQV
                     SSLNPFLKEKFEIYCKKFVLPYFLKHNLKLALKACEILTSQEKTLEALKKLQELNLQG
                     RCQEISPNFFVDVGHNPMAAKAMLDKFQGEKINLIYNAYLDKDIFQILNTLKPIIDTI
                     QIYKYKSAERKLADDEIYSIASKLGMQCKEFVKLEENKKNLVFGSFMLVENFLKEWCG
                     KK"
     gene            18232..19134
                     /locus_tag="ACHFOB_000016"
     CDS             18232..19134
                     /locus_tag="ACHFOB_000016"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN5798866.1"
                     /translation="MVKNKFTITITDINGSRHFYLNQIIKKIVFYIIAFIVLFLVFSG
                     FYIKYLDSKLSDISEKREELLKKSKELELSNSQMQKSIEEKTQQYAAIEDKIASFEEA
                     LGLEAENNLTISARLDNLQLTNEQQLGILGQIPNGWPIENKGITGNFGWREHPLLKRR
                     EFHPGIDLRAEIGTPIYAPASGVVEFSGYSDNGYGYNVILLHNFGFKTVFAHMMRKEV
                     VKAGQFVNKGQLIGYSGNTGLSTGPHLHYEVRFINKTLEPLYFLNLQRKNMNDFFNQE
                     RRVPWQSLIKAVSAQHPALAQKQQ"
     gene            19071..19466
                     /locus_tag="ACHFOB_000017"
     CDS             19071..19466
                     /locus_tag="ACHFOB_000017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polymer-forming cytoskeletal protein"
                     /protein_id="HFN5798867.1"
                     /translation="MAIFNKGGISPTSSSSSETTVISSGARIEGKFYFASMLHVDGEL
                     SGIIHSESIVVIGKNGNLKGELQADKIVVNGCFEGQLEANSLEILAGGVVNGDISTQK
                     ISIENGGRFNGTSKIKEDTIKLIENNNEE"
     gene            19466..22402
                     /locus_tag="ACHFOB_000018"
     CDS             19466..22402
                     /locus_tag="ACHFOB_000018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HFN5798868.1"
                     /translation="MQASFYEYLQNPKICELFLCKDEKQADLLAQVSRFKGLKTFVLP
                     DFRAQFGDDLRAFSKELFDLCKILNAYHKEEEKKILISPLNTVLKKLPSKKHLQNYHI
                     DKKQNFDLKCFEDEISRLGYEFVDIVQDKGEISIRADIIDIFCINEENPIRILLFGEE
                     IESIRYFDLQSQKSIPNELEHFEICPFLKYFDKENYEIFKDKLEDFQSDALIHDINSL
                     GFWCIDDFFDYLELDFLACEKFDINEYEKDISFVNAKILPQAKKFKELQSSYNKDFFE
                     FHKNKKITLLAKNEALFKALELEDTQNIHFVKSDLRLNLISPEELIISLNQKEKQKTR
                     KKASLIIDELKNGDYIVHEDYGVGKFLGLEMIVISGAKKEFVAIEYQNSDKLLLPVEN
                     LYLIDKYLGVSGSIPSLDKLGKTSFIKLKEKLKTKLLAIASEIVIMAAKRSLVQAKKI
                     TVDLNRQTDFIASAGFIYTSDQDKACHEILQDFQSGKVMDRLLSGDVGFGKTEVAMNA
                     IYPVVKSGFCAFLFAPTTLLSHQHYKTLKKRFDPFDIKVFKLDRFTSSAEKKQVLQNL
                     KENKACVVVGTHALLSVECENLALVIIDEEHKFGVKQKEKLKEITQNSHILSMSATPI
                     PRSLNQALSSIKSYSVLQTPPEDRMDVRTFVKENDDALLKEAIARELRRGGQIFYIHN
                     HIASIEQCKKHLLELFSTLRILILHSKIDAKMQEEEMLKFENKEYDLLLSTSIVESGI
                     DLPNANTIIVEKSDRFGMADLHQLRGRVGRSDKQGYCYFLIEDKNAITKDALKRLVSL
                     ESNSFLGAGSVLAYHDLEIRGGGNLLGVDQSGHIEQIGYSLYLKMLEDELNALSKNEV
                     DQKENKLDLKLNVNAFLNSELISEDRLRLELYRRLSKCEQVHEVYEIESEIEDRFGKL
                     DIYTKQFLSLIIIKILALNKFKSISNYEQNIQFTALNDEKELIKAKSKDDDDILEAIL
                     THLRKA"
     gene            22404..23165
                     /locus_tag="ACHFOB_000019"
     CDS             22404..23165
                     /locus_tag="ACHFOB_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5798869.1"
                     /translation="MDWNKTYAAIYRARKDYLKPIFEIDPITLKDLVGMESQKKALYE
                     NTLNFIQDKGANHALLWGSKGTGKSSLIKAIFNEFKDQGLRLVELNKEDLFALVDIID
                     EIRLENFKFILFCDDFSFEKGDDSYKFLKPLLEGSIEKAPNNVIIYASSNRRHLLSES
                     IADNLDTQIAHTELHLSDAAEERLSLSDRFGLWLSFYQGNLEEYLKMIDFYFKDYSCD
                     KELLHAKAKEFATLRASRSGRTAKQFYLAFKENFK"
     gene            23162..23848
                     /locus_tag="ACHFOB_000020"
     CDS             23162..23848
                     /locus_tag="ACHFOB_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyladenine DNA glycosylase"
                     /protein_id="HFN5798870.1"
                     /translation="MTGARIFTKLLNLDLNYHDFDWLENQGLSEFELLISVILTQNTN
                     WKNVLKALENLKKENIVSLEQINTLSNLELATLIKPSGFYNTKAKRLKGLVESIINTY
                     ENLENFKTNVSREWLLNIKGLGFESVDSILNYLCKREILVVDNYSLRLAFCLGYEFEN
                     YEELREFFQSGIESEQENLCKILGRKCELYELYQIFHALIVAFAKQSFKGQKLSPKGE
                     EWIKILKEDL"
     gene            23845..24657
                     /gene="thiD"
                     /locus_tag="ACHFOB_000021"
     CDS             23845..24657
                     /gene="thiD"
                     /locus_tag="ACHFOB_000021"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HFN5798871.1"
                     /translation="MKAKGSELIPVLTIAGSDCSGGAGIQADLKTFSAHNLFGMSVVL
                     SVVAENTARVISVHDIPTQSVDEQMLAVFEDIVPKATKIGMIGSCELMSCVAKNLSEF
                     KPQNVVIDPVMFAKNGYALMPQENCDFFKQTIVKFADILTPNIPEAEFLCGFKIANEE
                     QMIKAAKHLCSLGAKAVLLKGGHSEENANDVLYDGKEIYILKGERIETKNTHGTGCTL
                     SSAIASNLAKGKDLFYAVSEAKEYVRNAIYYSLNLGKGCGPTNHFFKFLDEK"
     gene            24647..25279
                     /gene="thiE"
                     /locus_tag="ACHFOB_000022"
     CDS             24647..25279
                     /gene="thiE"
                     /locus_tag="ACHFOB_000022"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004789 - thiamine-phosphate
                     diphosphorylase activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFN5798872.1"
                     /translation="MKNKLDLSLYLVASQGNKSEECFLNTLENAIKGGVSIIQLREKE
                     LNAREFYKLGLKVQKLCKAYKIPFLINDRVDIALALDADGVHLGQEDLEVKLARKLLG
                     DEKIIGLSLKKLEQLEFIQGANYLGCGAIKATPTKESSLLSLELLSQICDKSPIGVVA
                     IGGVDKAVLDELKGINLSGVAVVRAIMDAKDAFLAAKELKRKIYENLPLK"
     gene            25257..25886
                     /locus_tag="ACHFOB_000023"
     CDS             25257..25886
                     /locus_tag="ACHFOB_000023"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HFN5798873.1"
                     /translation="MKIYLLNETPFKGVENLILNEIIFYDFSIDLSLYDALICTSKNA
                     LKALQNAKITLNFKLNLYAVGQSTAQYAKNLGFKKIKIPSKAYGKDLFLEFKEELKTQ
                     KCLYLRAKNIVSTLNLDLKNVGVDLDEVIVYENVFKKGDKKLTHPAIFIFTSPLSVEN
                     FLKFYSLKEEDKVVVIGQSTAKKLLNFKNLYICENQSLLECVKLAKTLV"
     gene            complement(25883..26335)
                     /locus_tag="ACHFOB_000024"
     CDS             complement(25883..26335)
                     /locus_tag="ACHFOB_000024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798874.1"
                     /translation="MKKAYVLIWTIFLILLISLWMSLTLNISSYTPKIIQDSYYYLQA
                     QILSHNATQFSKYFLYQAKQENKECLDNIYFNYTKALIKIKYFYPIAQCVNFKFSNFN
                     PDANLSKDGVIIAHISIALNRDKNVNDEILLTKSIIIYPKENFWNLKN"
     gene            complement(26332..26994)
                     /locus_tag="ACHFOB_000025"
     CDS             complement(26332..26994)
                     /locus_tag="ACHFOB_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798875.1"
                     /translation="MSKAFTLFELIISLILFTFITSLLSKPLMDFYHLNFTALHTNNL
                     ITQAHLNLLKIEKLIQNCINITFSQNTLKCLLKDELISLKDNKLYLINSALILENNHT
                     LYSPHSDFKTQLQNRKDLYNDNEHISYAYKINKIEKISILENGISANFTGSFIPLQAQ
                     LVIKLQNEELIYEIKPKFNEQLNQQGLISKNISSFNLQNNKLKICLKRQTKHCLEKRI
                     LL"
     gene            complement(26991..27293)
                     /locus_tag="ACHFOB_000026"
     CDS             complement(26991..27293)
                     /locus_tag="ACHFOB_000026"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HFN5798876.1"
                     /translation="MKKAFILIESISAITIISLIFIGIFYYYIQLYKNYENLNIFERL
                     YKLQEELYEKPIFKTIILQTSALKPIVLQEQFVNDGIFQFQKLYFQDQNYSVYFKE"
     gene            complement(27290..28021)
                     /locus_tag="ACHFOB_000027"
     CDS             complement(27290..28021)
                     /locus_tag="ACHFOB_000027"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HFN5798877.1"
                     /translation="MLYILANGSMATALAYGLKDDYEICIVGRSIEKLQALAKEGFKT
                     LLYKDFNIEGKDVILAFKPYALENIAQMLKGQARILISVLANVDFEKLQTIKAQNYVR
                     IIPNTAAKYKASTTPYILKNSHFENEILDILKTFGSAYKLDNEIQMNAAMAISGCAPA
                     FLALIAESIANAGVYEGLSKELSLNLTRSLFKSSNALLEHEHPAIIKENICSPGGVTI
                     KGIKILEQKGIRGSFFEAINASSAK"
     gene            complement(28021..28410)
                     /gene="fliW"
                     /locus_tag="ACHFOB_000028"
     CDS             complement(28021..28410)
                     /gene="fliW"
                     /locus_tag="ACHFOB_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliW"
                     /protein_id="HFN5798878.1"
                     /translation="MTLAVKCPILGFEETKNMEFSTIDEVFVRLKSLDGKDFSFVLIN
                     PYLIRPDYEFDIPTYYQELLSLTPESNMKIFNIVAIAKSIEESTVNFLAPVVINLDNN
                     TMVQVILDTVNYPDFFQADQIANYIKK"
     gene            28571..29218
                     /locus_tag="ACHFOB_000029"
     CDS             28571..29218
                     /locus_tag="ACHFOB_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamD"
                     /protein_id="HFN5798879.1"
                     /translation="MKKGIFLLVFLSVFFSACSTKNDEGLYNLSASEWYKQIIKDLQD
                     KDLEKADDHYNGMASEHVADPLLETTLIILAQAHMDEEEYKLAEFYLDEYNKKFGNSR
                     NADYIRYLKIKAKFDAFAVPNRNQALMLESQKEIDTFLKDYPYTEYEPLVQTMLTKFN
                     LAVFYLNSTIENLYQRIGHDESAQIYKQRLQESEFYQQSIIKPELPWYRSIFERF"
     gene            29235..31610
                     /gene="lon"
                     /locus_tag="ACHFOB_000030"
     CDS             29235..31610
                     /gene="lon"
                     /locus_tag="ACHFOB_000030"
                     /EC_number="3.4.21.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endopeptidase La"
                     /protein_id="HFN5798880.1"
                     /translation="MQIEEIQNYPANLPVLVEDELFLYPFMITPIFINDSSNMKALDL
                     AIKNDSMLFVAPSKLENGRNFDEIYNCGVIGTIMRKVPLPDGRVKILFQGYAKGKIIE
                     QISNKPLEAKIELIKEDFLEGTKKEALLEVLKEKVKNLANISHYFSPDLLRTIEEGFD
                     ASRICDLILNTVRIKKQVAYEFFVLTDLEQKLVKLIDLIAQEIEANKIQKEIKNKVHS
                     RIDKVNKEYFLKEQLRQIQKELGSDTQKEDEVREYQKRLELKKKFMHEDAYKEIKKQI
                     EKFERIHQDNSEASMIQTYIETALDIPFEKISKKKLDIKEVSKQLNHDHYALNKPKER
                     IEEYFAVRELLEKRKIAEKDGAKVILCLYGPPGVGKTSLANSVSKALKRELIRIALGG
                     LEDVNELRGHRRTYIGAMPGRITQGLIEAKQINPVIVLDEIDKLNRSFRGDPSAVLLE
                     ILDPEQNSKFRDYYLNFNIDLSKVIFIATANDISNIPAPLRDRMEFIELSSYTPSEKF
                     HIMKKYLVPDELKKHGLKSNELSIDDETIELIISDYTRESGVRNLRRKVAELCRKSAK
                     KLLLENIKKVIINTKNLNEFLDKKVFEIEKNNGENQVGQVNGLAWTSVGGDVLKVEAV
                     KIKGKGELTLTGSLGDVMKESARIAFSMIKVLIDEGKIKIPKKIIIDPKVNVYDSYNI
                     HIHVPDGATPKDGPSAGITISTAIASIFSDKKVKADVAMTGEIDLKGKVLPIGGLKEK
                     LIAAYKADIKTALIPRKNYERDLKDIPSEVRDNMEIIAVDTFSDVLEYTLI"
     gene            complement(31671..31931)
                     /gene="rpsR"
                     /locus_tag="ACHFOB_000031"
     CDS             complement(31671..31931)
                     /gene="rpsR"
                     /locus_tag="ACHFOB_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HFN5798881.1"
                     /translation="MAEKRKYSRKYCKYTEAKVEFIDYKDTAMLKHALSERFKIMPRR
                     LTGTSKKYQEMVEVAIKRARHVALIPYIVDRKEVINNPFEGL"
     gene            complement(31942..32493)
                     /locus_tag="ACHFOB_000032"
     CDS             complement(31942..32493)
                     /locus_tag="ACHFOB_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFN5798882.1"
                     /translation="MFNKVVLVGNLTRDIEMRYAQSGSAIGASAIAVTRRFTTNGEKR
                     EETCFIDISFYGRTAEVANQYLTKGSKVLIEGRLRFEQWSDQNGQNRSKHSIQVENME
                     MLGNSNAPQQGGNFGNNSFSNNNYSGNYENQSYDPYMSENQNFNKAKTNPTPQRNQNP
                     QHEEKLKEIDIDAYDSDDTNLPF"
     gene            complement(32502..32879)
                     /gene="rpsF"
                     /locus_tag="ACHFOB_000033"
     CDS             complement(32502..32879)
                     /gene="rpsF"
                     /locus_tag="ACHFOB_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HFN5798883.1"
                     /translation="MKHYEVLFILKPTLTEEEVNAKLEFVKEVLIKNGAEIETVVPMG
                     TRKLAYKIKKYERGTYFVIYFKAPTNLIAELERVLRITEEVIRFLIVKYENKKEIAAW
                     EKLSHGIKQSKKEIKPLDAPEIQ"
     gene            33108..33545
                     /locus_tag="ACHFOB_000034"
     CDS             33108..33545
                     /locus_tag="ACHFOB_000034"
                     /inference="COORDINATES: protein motif:HMM:NF015581.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF302 domain-containing protein"
                     /protein_id="HFN5798884.1"
                     /translation="MKKILVLLFMCFSSLFANDDFIYEKSKYNFNELIKRVEQELKDR
                     NLTIFAKFNHYQNALDVNLTLKSNTVIVFGNPIVGTYLMQENPMIGIELPLKILIWQD
                     QNNETFIGYVSLKSKIQKYHIKNTVLVDKIDSLMKDIINISKK"
     gene            33560..34915
                     /locus_tag="ACHFOB_000035"
     CDS             33560..34915
                     /locus_tag="ACHFOB_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002863358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFN5798885.1"
                     /translation="MKHYEVIIIGFGKGGKTLAAKLAMLGKKVALIEEDENMYGGTCI
                     NVGCIPSKSLVKNSLCADKNANWEIKQNFYYNAILEEKQLSAMLRQKNYDKLNALENI
                     TLYLGKASFINEKTLLIQGEKEVQISADRIYINTGSIPIIPDIKGLDQSKNVLTSKEL
                     MAQENLPKHLVIIGGGYIALEFACIYANFGSKVTLLQRNDTFLGKEDKDFADLIFQNL
                     ENKQIDIRLGVQFKEIKDFDQKSIVFFTQDHQDFEIECDMILLATGRKANTLGLSCDK
                     AGIQLDKRGFIIVDDTLKTNKDSIYALGDVNGGLQFTYVSLDDYRIAYAPFRQQNYTK
                     SKRKVIPYSVFIDPPFSRVGLNEKESIDAGYRIKVVKLPVVAIPKAQVLKKTYGLLKA
                     IINEENDEILGAMLFCEESHEMINIVKLAMDTNLKYQVLRDQIYTHPTMSESFNDLFD
                     I"
     gene            complement(34893..35765)
                     /locus_tag="ACHFOB_000036"
     CDS             complement(34893..35765)
                     /locus_tag="ACHFOB_000036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VirK family antimicrobial peptide resistance
                     protein"
                     /protein_id="HFN5798886.1"
                     /translation="MNKKFSYPIPNFTDRRKSIIFWRYLRFQARKILYFPQVRLLEKT
                     LNEEKNKHLKDFFSQRPYACYNAIRRFCDKSFKANERVKTLIYDVDKGLTCFKFLPEE
                     QMIFSFDEDFELFLGYNHNVYEEGFWAFSLKFKKYTISQCNFCFTLENNLLLSCIQGY
                     KYKDFNILEINKILTKKCHGLRPVALLIECSKMLCEILKLQATLGVHEKNQIRSQKGK
                     EKGYFVDYQKIWLENGGELIKIDKHKYYKLHHSQKNLEEIPSQKRSMYKKRFTMLEGI
                     RQNLKNLFRYQINH"
     gene            complement(35758..36864)
                     /gene="rseP"
                     /locus_tag="ACHFOB_000037"
     CDS             complement(35758..36864)
                     /gene="rseP"
                     /locus_tag="ACHFOB_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HFN5798887.1"
                     /translation="MRSLLFLIVILILGIKFYSIEFLATVLVISFLIFFHELGHFLAA
                     RSLGVKVEVFSIGFGKSLIEREFKGTNYRLSTLPLGGYVKLKGQDDMRPGFENLDKDS
                     YSILSPLKKIYILFAGPFFNLILAFFLYIIIGNLGLNKLAPQIGSIAPNSAAQDIGLQ
                     KNDTILEINGIRIQSFDEISKHLSLEPLKILIDREGKNLEFILTPKIGQGYNDFGQIV
                     EKPQLGVSPNGTSTLVKHQGLESFKYAAQESFQASTLIIKGIVKLISGEVEAKNLGGI
                     ITMTEITSKAAQNSFTLLLFITALISINLGILNLLPIPMLDGGHILFNLYEMIFRRKI
                     PQRAFEYLSYAGMAILLSLMLFATYNDISRIAGE"
     gene            complement(36861..37397)
                     /gene="pgsA"
                     /locus_tag="ACHFOB_000038"
     CDS             complement(36861..37397)
                     /gene="pgsA"
                     /locus_tag="ACHFOB_000038"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008444 -
                     CDP-diacylglycerol-glycerol-3-phosphate
                     3-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HFN5798888.1"
                     /translation="MNLPNILAIFRMVLAPLLFFLLIHHFENIHQSWINYFAALTFSL
                     AALSDFFDGYIARTWKQTTKLGGILDPLADKMLVLAAFLGLLLTGKANEWVIYIILVR
                     EFFITGFRVVMISENLNVNASFAGKLKTAFQMTAIGFLIMEWIGGEILLYIALILTLY
                     SGFEYIYTYIKAQKKGEK"
     gene            complement(37522..38127)
                     /locus_tag="ACHFOB_000039"
     CDS             complement(37522..38127)
                     /locus_tag="ACHFOB_000039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFN5798889.1"
                     /translation="MKKELEIFSTRYSCRNFKNEKLKKEDLNSILEIARLSPSSLGLE
                     PWKFIVVQDEKRKEELSKICNQQKHVKDCAALIIIISRLDFLDYFEEKLRKRDMSETE
                     MQKRLDTYMPFLKSLNQEQKISYAREQAHIALASILYSANALNIASCTIGGFDKEKLD
                     SYLSLDIQKERSSLVVALGYCNDKKNPQKNRFSFDEVVKFI"
     gene            complement(38127..38747)
                     /locus_tag="ACHFOB_000040"
     CDS             complement(38127..38747)
                     /locus_tag="ACHFOB_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002805019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFN5798890.1"
                     /translation="MNFKELISKRRACKLFNDKKINEKDLHFILESGVLAPSSHGFEP
                     WKFVVLEQKEHNLKLSTLCYNQQNVASASHNIIFLARKDLQSKDEFAQKQVRRFSGSS
                     EENFQKILEIYTHKTNAMNDNELYHYAQLQCYLAMMQMSLAAMSLGIDSCMIGGFEKA
                     KVDNFLNLTYPFETAVILSLGYKAHEPKYSTQRLNFNEVVEFYKEK"
     gene            complement(38811..39236)
                     /locus_tag="ACHFOB_000041"
     CDS             complement(38811..39236)
                     /locus_tag="ACHFOB_000041"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN5798891.1"
                     /translation="MKEIKLKEDLEKIYPLIKQLRNNLSLKDFLDKIQLATQTQHYKL
                     FAYENEGSYKAACGVMPFNVLYHNHCLYICDFVVDEALRGKGIGQAFLKKIQIWAKDQ
                     GYEELELSSSFFRTQAHEFYIQKMGFEKSGFVFKKNIKL"
     gene            complement(39248..40336)
                     /locus_tag="ACHFOB_000042"
     CDS             complement(39248..40336)
                     /locus_tag="ACHFOB_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CinA family protein"
                     /protein_id="HFN5798892.1"
                     /translation="MKHLLYLIGDELTINEKFKNYIYRTYEEKFKEINEIRIQSKTDK
                     DLPFLLENLLNQYDFITLFTSPLHYATVAKILATLNDDNLILKDDTLVPDKAEFSKNS
                     FVCNFSNSKINVVKINPSEKLPNLLGHIKLNFAYFCIFGMDDESAILLLQTLTKSYEI
                     NIKLTKLLDNLVLIKATCANFGKLDGFLNSVKNLFGQKVFLGKDPIHFISSKLLEKKL
                     KISFAESCTGGLCASTLTKISGVSEIFEGSIVSYSNRIKHEWLGISESILENNGEYSE
                     RCVYFMLKGIFKTANPDFALAISGVVGEKDEGKIKSGTIYIGAMFRDGTFIQETLYLD
                     GDREFMQEQAVLATFCLLLKLKPEIFEI"
     gene            40435..43188
                     /gene="ileS"
                     /locus_tag="ACHFOB_000043"
     CDS             40435..43188
                     /gene="ileS"
                     /locus_tag="ACHFOB_000043"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004822 - isoleucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006428 - isoleucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HFN5798893.1"
                     /translation="MDYKETLLLPSTTFAMRANLAELEPQRFKKWFEQNYAYETMKEN
                     RKNAKKSFTLHDGPPYANGHIHIGHALNKILKETIIKTHYFKGESVRFTPGWDCHGLP
                     IEQQVEVKLGEKKKSLSKKEIREFCRQHASEFVDIQREEFKNLGIIADWDKPYLTMKF
                     EFEAAIYRTLCEIAKKGLLCERSKPVFWSWAAKSALAEAEVEYQDKEDYSIFVAFDLD
                     VKACEKLGVSKASAVIWTTTPWTLVANQAIALNPNENYVITKEGLIFASALLKSMVEK
                     GLTSGEIQKELNAKEFEKLEAINPLNGRKSVLIMGEHVLMDGGSGLVHTAPGHGEDDY
                     YACLKYGIEVLMPVDDGGCYDETLRAKELLPSHLLEEFIGLHIFKANEKILELLGAKL
                     LHSSKFIHSYPFCWRTHKPVIYRATKQWFILMDEPKLQGKTLRECAKEQLLKTTFYPQ
                     SGVKRIGSMVENRPDWCISRQRDWGTPIAFFRDKNTKEVIFDDELFDFVAAIFEKHGA
                     DAWWEFEIKDLIPTNSKYNAENLEKVYDILDVWFDSGSTFNAVLNSGLYDAGEKRASM
                     YLEGSDQHRGWFQSSLLVGTAINESAPYESILTHGFTTDEKGQKMSKSKGNVIAPEYV
                     AKTYGVEILRLWILLSDYSSDLKISDNILKQVGEQYRKIRNTIRFLLANTNDLKDLKV
                     KEFSFIDKWILSRATKVFKASKEAFFAYEFAKGFSLLLNFLSADLSGIYLDISKDRLY
                     CDSENAQRRKSAQVAMALIAKELLNLLAPNLSYSVDEALEHANVLIKGDAKDVFDLSL
                     TQDFDYDFGIDDTFLMSAREKFFEQIDILKKDKIIKSTLELNLNISFNKFPNEELADW
                     FMVSQISNENEEILAEFEVENEKFKITKASLCKCPRCWKLQSKDEETPCLRCEEVLKG
                     IQC"
     gene            43182..43292
                     /locus_tag="ACHFOB_000044"
     CDS             43182..43292
                     /locus_tag="ACHFOB_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798894.1"
                     /translation="MLENPIPNSIIITTIAVVLAFSALAVFLIKKTKENK"
     gene            43289..44650
                     /gene="gatA"
                     /locus_tag="ACHFOB_000045"
     CDS             43289..44650
                     /gene="gatA"
                     /locus_tag="ACHFOB_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HFN5798895.1"
                     /translation="MITLKEALKYSKEELENLKKELNEKAKKEKKIGAYIEQFLDKDL
                     SVSGEGVPVAIKDNISVKGWELTSASKILQGYIAPYDASVIVNLKANGFSPFGRCNMD
                     EFAMGSSTASSYYGKTLNPLNFERVPGGSSGGSAAAVAGGLALASLGSDTGGSVRQPA
                     AFCGCVGFKPSYGRVSRYGLASYSSSLDQIGVLTQNVEDAAILYDAIAGYDKMDSTSA
                     NIEFIKTAPNLNANKKLKIAVIENYVNDADSEVKNALLKTIDMLKANGHEIVYKNLLD
                     SKFDIAAYYIIATAEASANLSRYDGVRYGKRSENIQNLKEMYVNTRSEGFGEEVKRRI
                     LLGTFVLSSGYYDAYYIKAQKARAFIKAKYEEILQDCDLIFMPVTPTTAFKFDTQKSP
                     MQTYLEDVYTISVNLAGLGGISVPVAKDKEGLNISAQLICKAYDEQTLLDGALSLEQM
                     IKN"
     gene            44660..46117
                     /gene="guaB"
                     /locus_tag="ACHFOB_000046"
     CDS             44660..46117
                     /gene="guaB"
                     /locus_tag="ACHFOB_000046"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003938 - IMP dehydrogenase activity
                     [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HFN5798896.1"
                     /translation="MKIVKRALTFEDVLLRPGYSEVLPKEVKIHTKLTKNITLNMPLI
                     SAAMDTVTEHRAAIMMARLGGLGVIHKNMDIASQVREVKRVKKSESGVIIDPIFVSPK
                     ASVAEALEIMAEYRISGVPVVDEDKKLIGILTNRDLRFESDFSNLVENVMTKMPLITA
                     PKGCTLDDAEKIFSTNKVEKLPIVDEQGRLEGLITIKDLKKRKEYPDANKDNFGRLRV
                     GAAIGVGQMDRVDALVEAGVDVVVLDSAHGHSKGIIDTVKAIKAKYPNLDLIAGNIAT
                     AAAAKALCEAGVDAVKVGIGPGSICTTRIVSGVGVPQISAIDECVEEANKFGVPVIAD
                     GGIKYSGDIAKALAVGASSVMIGSLLAGTDESPGELFTYQGRQYKSYRGMGSLGAMQK
                     GSSDRYFQQGTAQDKLVPEGIEGRVPYVGSIRSVVHQLLGGLRSSMGYVGAKDIEDFQ
                     KRAEFVEITTAGLKESHVHDVTITHEAPNYKVNHQ"
     gene            46114..46287
                     /gene="xseB"
                     /locus_tag="ACHFOB_000047"
     CDS             46114..46287
                     /gene="xseB"
                     /locus_tag="ACHFOB_000047"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HFN5798897.1"
                     /translation="MSFEENLKHANESLEKLNNQELALDESVKIYKEGLESIKKARLE
                     LEKAKLEVEQIDE"
     gene            46280..47056
                     /locus_tag="ACHFOB_000048"
     CDS             46280..47056
                     /locus_tag="ACHFOB_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HFN5798898.1"
                     /translation="MSKIAALQFPTLALSESRLDYYLKASKDNGANLVVLGEYVINSF
                     FTELLHMPKNMIKEQSEAKKESLIKLAKKYELEIIAPYVSVEAKSYKKLCLKVTPNGV
                     KSYEQQILMPYEHWNEEKFFSNKTPSELKIFTFNYEKLKCALLFGFETHFDIFWQQIM
                     AKKIDLVIVPSACTFESKQRWEELLKTRAFLNSTSILRVNRIGKTKDEWNFYGDTLFI
                     NAFGEIESKLGSEEEMLIIEPKKSDEARKLWGFDKILKNF"
     gene            47068..>47304
                     /locus_tag="ACHFOB_000049"
     CDS             47068..>47304
                     /locus_tag="ACHFOB_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFN5798899.1"
                     /translation="MRKILLQIFIFSVLFIVTFAINRILMQNSFIPTGLISDKNEIFL
                     MYLLGVFHDIRFLSAAFLPFLLCGFLSLIFSNIKI"
BASE COUNT        16754 a         6104 c         8129 g        16317 t
ORIGIN      
        1 taataatctc cttcatcatg aaattctaat tcttcgacaa aaattttagc accattttcg
       61 agtttattta attccttgat aaaatttggc tttaggtcaa tgtattttaa cacatttaag
      121 cttttctcat tattataaac aaatttgcct tctttaatgc gctctaaaga gcttaaagtc
      181 gcattaatac ctagttttct agcaaaaagt tcacaataag atcttatata agcaccttca
      241 ctgactgtga tttcgatatt taaaaaagga tgattatagc ttaagatctt gcaatcaaat
      301 acttccattt ggcaaggttt taaatttgct tctatacctt tttttgcaag ttcataggcg
      361 cgagttccat tgattctttt ggcgctaaat tgcggcggtg tataggagat aattccttgc
      421 atttgatcaa tgatttgttg taaatttgca agatcaaatt cttttatatt ttgaatttct
      481 tttatatttt gatcatcaag acttaaggag taaactccaa gccataaagt agctttatag
      541 gtttttggag ttttttttaa aaatcggaaa agttttgtgt attgtccaaa cgcaacgatt
      601 aaaacccctt tggcgaaagg atcaagagtg ccagaatatc ctgctttttt atttttatat
      661 tttttcttta aagtacttaa aaaggcatta gaactcaaac ctcttggttt aaaggctgca
      721 aagatcttat tcatactgct ttttccacga agcttgccat gattacacgc attataccac
      781 caaaattaat attaagcttt tcctcttttc cgcttttatt aacttcaaca accctgccaa
      841 tgccaaaaat tttatgttta actagatctc ctttgcaaaa actagttttt tgtatatttt
      901 gattttttga tttttcattg attaatttac tttcttctaa gaagcggcta ggattgatgt
      961 ttgctcttga accatgataa aaacgagaat ttgcaacact tattgtgaga agtttcttgg
     1021 cgcgagtgat ggcaacataa gcaagacggc gttcttcttc gagattttct tcgctattta
     1081 aaggaaaaaa tccttcatca aagcctatta taaaaacata atcaaattcc aaacctttgc
     1141 tagcatgaat actcatcaag caaacacatt cttcatctaa attatcttga tcacttaata
     1201 aagaaatttc actaagtaga tcttctaaag aagcttcggg atcttctttg agtttttctc
     1261 ttagattggc ataaaactca tcaagatttc tgattctttc atctccatca tcttgctctg
     1321 aaaaataatc tttaatttta aataattctt ctatattgtc aaaaaccttt tttgcattat
     1381 cgtagctttt tagagtgtga atattttgta taaaaatatt tgcttcattt tgtgcttttt
     1441 ttgttgttaa aattcctaca ccaccatcgc tttcgcatag ggcatcaaaa agtgaaattt
     1501 gacgtttttt tgcatattct tctaaatttt ttagggcttt ttctcctatg gatcttttgg
     1561 ggcgattaat aatacgttta aacgacaaat catcgcttgg atttaagata agtctaagat
     1621 acgagattaa atcttttatt tctaatctct cataaaaacg cataccacta agtagtttat
     1681 aagaaatttg tttcttcata aatgcttctt ctattgctct tgatagtgca ttaactcgaa
     1741 ataaaatggc gatctcttta gcttctactc cagaatttag caattttttc acttcttgag
     1801 cgatatataa accttcatct ttttcgtttt cgttttttaa tattttaata ttttccccag
     1861 tatctttagt gcagattaaa gtttttccaa gtcgttgctc attgtgagat atgagattat
     1921 ttgctgcttg taaaatagtc cctactgaac gatagttttg ttcaagtttt acaagtttaa
     1981 catttttaaa atcgttttga aaatttaaaa tattttcaat ttttgctcca cgccaactat
     2041 aaatactttg atcatcatca ccaacaactg tgatattttc atgcatacaa catagatttt
     2101 ttagaatttt atattgcaag gtattagtat cttgatactc atcaactgta atgtaattat
     2161 aaagtaagct ttgttctttg gcaaaattta tatcattttc taaaatgaga ttgcttagca
     2221 ataaaagatc atcaaaatct acaaaatttt gttttaataa gtattcttca taagcacggt
     2281 aatagttggc aaatttgtat tcattttgat atttttcaaa attatgttct tttagtaaat
     2341 ttaaatcttc aaagacattg cttactcttt tgccttcatt tttgcaataa gatatgtatt
     2401 ggataatatc atagacatta tctttgtttt tatcatggat taagtcttta attatttttt
     2461 ttgtatcatc tgtatcgata acaataaaac tatttttacg ctccaatctt tcaaaatgga
     2521 gttttaaaaa taaaagtcca aatttatgaa aggtgcaaag caaaggattg tgattgcctt
     2581 gtagaaaatt taatgctcta tgacgcataa cattagctgc tttatttgta aaagtaagag
     2641 taagagtgtt atgtgagggg atgcctactt caccgataag ataagcaaga cgagtggtga
     2701 tagttttggt ttttccacta cctgcgcctg ctaggataag catggctcca tcaatgtggc
     2761 ttaccgcttg tttttgacta tcatttaaat cttcaaatag attcattttt tgaaaatatc
     2821 tttatttttt ggattattta aaaatatatt tttagatttt tgtaaatttt tgctatcttc
     2881 acgtttataa agactaaaat taacgaataa aatgctattt tctacttgaa tttgcgtgat
     2941 agctcctaaa tcaaccttta caaaactatc aaaatcatca tttccaaaac ctgcgtgaaa
     3001 ttgaatgaaa tctttattta gttgtatgga ttcaaaggtg tatcctccaa gagcaaaaag
     3061 agcataagga ttttgtttaa tatcaagctc tttgggaagt tcagggttaa aatctatgaa
     3121 atttgtattt gcaactatgg aaaattctat attttcttct ataaggtgtg aaataacttc
     3181 ataacaatgc ttttgcatgg tatggataaa attttcattt tttaagattg tttctagcat
     3241 gattgtaact ccatgaattc attgatgagt ttttgaattt cttttatgcc tatttcccaa
     3301 aaattttcat cttctatatc aaatccaaac attcctacta gttcttttgg actcacgctt
     3361 ccacctaaag aaagcatttt gatataaagt tctttaaaat tttcacattt tttacttttg
     3421 taaagtccat aaagagctaa aactaaaagt tgtgcataag cataagcata gcagtaaaaa
     3481 ggagaatgga taaaatgagg aatataactc caccaagaag cataattttt tgtaagtttt
     3541 acgctgtctt gaaacatctt ttgagattct tccatccaaa ttttattgat ttcttcagtg
     3601 ctaagttcat tttcttgagc atgtaagcgt ctttcaaaac aagtaaaatt aatttgtcta
     3661 taaaaagttg caaaaatatc ttcgatttta tttgcatata aagataggag ttcttctttt
     3721 tttagcttat ctttaataaa atcaaatacc agcatttcag caaaaactga agctgtttct
     3781 gcggtggtta aaggcgtatt ttgatttaaa tagcttacat gataagaaag tttttgatgg
     3841 atagtgtgtc ctaattcatg tgcaagtgta aaaagatcgc gtcttttatt ggtgtagttt
     3901 aataaaacaa aaggatgtgc atcagaagtt gcagaatgtg aaaaagcacc cccttgttta
     3961 ttttcttgcg gataaacatc aatccagcct tgatcaaaag cattttttgc tatatcataa
     4021 aattgtggag aaaaagcttg aaatgcctct aaaacaatat ttttacttgt tttaaaatca
     4081 aaacttgctt cttttcctat gggtgcatat ctgtcatagt ctttaagctc atcatagcct
     4141 aaaatttgtt tttttctttt gtaaaattgc gatactaagt taaaatgttt ttgcgcactt
     4201 gctatcaaag aatcaacgct tttttgtgaa atttgattgc tgatatgtct tgaaatttca
     4261 gcattttcat aacctcttaa taagcttata ttttttcttt ctgtttttat catattgata
     4321 ataaaactta aaagtctgct atttttttgt aaaactttac tgaatttttt agcagctttt
     4381 ttgcgtatct ttctatcttc atcatacatt ttgcttagaa tttcttcttc gctaagtttt
     4441 ttaccttcaa aagggatttt taaagcgctc atactttcat caaaaagtct actaaaagca
     4501 tttgcacctg tatttgaaag atagagcata atgcgttctt cgtttttgct aagattatag
     4561 cgtttgtttt gcaataaatt agaaagataa aaatcataat ctttgcaaaa agttgtaaat
     4621 tcttgacttt tttcaggagc taactcgcaa aattcaagct cgaaaaagag taaattttct
     4681 tctatttttt tgcattcttc ttcgtattgt gcataaaaag aaccattttg agtgttttta
     4741 gcaaaaagta aataagcata agtcatgatt ttgccaaggg cttgatttaa attttcataa
     4801 tcttttaaag cttgtaaaaa ctcattagca tccaatgtat aaagtttatt ttcatagttt
     4861 tttttgaaat ttaaactttg ttggatttga tcttgtgtaa aattttgtaa tgcttcttta
     4921 tcgtgaaata aagcacttaa atcccattct aacatttttt atccttcatt ttctaatatg
     4981 agttttttaa gaacagccat tctaatggcc actccatttt taacttgttt taaaactaaa
     5041 gttctttcat cgctcatcat ttcatcgctt atgtcaatat tgcgatttac agggcctgga
     5101 tgtagtaaaa taagcttttt atcttttact aagctttttt gaatacaaaa atcatttgca
     5161 tagtctttaa gtgaagcgta aacggtttta ttatgtcttt ctgtttgtgt tctaagactc
     5221 atgataatat ctgaatttgc tatgatattc tcatcaagct tataatgttt tttaagatgg
     5281 gtattaggca taaaatgcgg tggagctact agggtaatat caagattaaa tctgcttaaa
     5341 agttctatat tagacgctgc tacacgagag tttttaatat cacctacgat gcaaattttt
     5401 ttaccttcga catcaccttg aaaatgatta taaatagtaa ataaatctag caaagcttgg
     5461 gtaggatggg cgtgttttcc atctcctcca ttaacaactg gacaatgcat atgctttgct
     5521 aatatcaaag gaactcctga gtttgcgtgt cttacaacaa tagcattagg actcatggca
     5581 tctaaattag cagcagtatc ataaagagtt tctcctttgc tagagcttga tcttgaaaca
     5641 tcaaggcgta aaaccctagc acctaatctt cttgcagcgc tttcaaaaga tgaaagggtg
     5701 cgtgtagagt tttcaaaaaa aattgtcgtg atactttttc ctttaagaaa agttctaggt
     5761 ttttcatcta agaaatcact tgcttcttta aaaagctcca taatttcgac tttattaaaa
     5821 tcctttgcag tgatgagatg acgcatgttt ttaccttatt tgatattgta atttaattca
     5881 tttttagaac aaattgctgt aaaaagaaca tctgtagaac tatttaaagc agtttcaaca
     5941 ctatcttgaa taacccctat aataaaacct atggcaacta ccttcatagc aatatcatag
     6001 tctatattaa ataaagaaca agccaaaggt ataagcagta aagatccgcc cgcaactccg
     6061 ctagccccac aagctgcaaa ggtggcaata atgcttaata aaaaggcttg taaaagactg
     6121 atttctatac caacggtatt ggctgcagta agacttaaaa tagctatagt aactgctgct
     6181 cctgccatgt tgatagtagc tcctaaaggt atagaaatgc cataaaattc tttatctatg
     6241 ccaagtttag cgcaaagtgc catatttaca ggaatatttg ccgctgaact tcttgtaaaa
     6301 aaggcaaaaa atgcactgtg ccttaagcag ataaaaatca aaggaaaagg attttttctt
     6361 gtataaaaaa agactattaa ggcattgata acaaaagtaa caaaaagcat agtagctaca
     6421 agtaaaatta agagttttac atagcttagt aaaccttgcg ctcctgtttg tgctacagaa
     6481 ttagccacaa gtccaaaaat tccaaaagga gcaagtttta ctacaaattt aacgattttt
     6541 aaaacccctt cattgatatc tataaaaact tgttttgctt cgttagaaca gtgttttaat
     6601 gctatacctc cagctattgc ccaagttaaa attcctaaat aatttccact tgaaagagca
     6661 tttataggat tatcgacaat tttaaataaa agatctttga aaatctcact catgtgggtt
     6721 ggagatgagt ttgtagcggt ttgaactcca tctaaaacaa gctttacagg gaagaaaaaa
     6781 ttagcaagaa ccgcacaagc tgaagcaaga aaggtgccta ctatatacaa aataataata
     6841 tttttgatct tagcaccact ttgagaaaaa tctttagtgc aaattgaggt taaaattaaa
     6901 ataaaaacaa gcataggagc gatagctttt aaggcacttg taaaaagtat tccgagtaaa
     6961 tttgcaattt cagatatttc tttagaacta atgcctatga gtattcctag tactatacct
     7021 atacaaattt gaactatgag gttgccttta gcgtagcttt gaatgatttt agaaaacata
     7081 aaaacctttt aaatattttt tatatcagaa gttgatttta actaactttt gcttaatttt
     7141 agtaaatttt taatttatca agctttgata agtttatttg gatacaattg tggttcattt
     7201 taaatgaaag gactttttat gtatctattc acttcagaag tcgtaagtgc aggtcatcca
     7261 gacaagtgcg ctgatataat cgctgatacg atagtggata tactcttgaa aaatgacaaa
     7321 aattcaaggg tggcgagtga ggtttttgtc gcaggaaata aggttgtgat aggaggcgaa
     7381 gttaagtcaa atcacaagct tagtaaagct gattacgata atttagttaa agatgtttta
     7441 aaaaacattg gttatgacgg agcaggccat tttagcaaag agcagtgttt acatcctgat
     7501 gaggttgatg ttatggtgtt tttaaatgaa caaagccctg atatcaacca aggtgtcgat
     7561 caagaagatg gcgaaacagg agcaggtgat caaggcatta tgtttggttt tgcaagttgt
     7621 gaagctgagg aatatatgcc agcagctatt agttatgcaa gaatgctatg tgatagagtt
     7681 tatgcttatg caaaagcaaa tccacatgaa cttggagtgg atattaaaac tcaagtgact
     7741 atagattatg gcactaaggc gaattttgaa aattgtaaac cgcaaagtat tcatactata
     7801 gtagtttctg caccttgtgt tgaaagtatg aaaatagaag atttaagatc tttagtgatg
     7861 aaacttatct tagatagtaa tttaccaaaa gaactttttg atcctaataa gactagaatt
     7921 ttaatcaatc caactggtaa atatgttaat cattcttctt tacatgatag tggtttaaca
     7981 ggaagaaaac ttatagtaga tagttttgga ggttattctc caataggtgg tggcgcacaa
     8041 tcgagcaaag attatactaa agttgataga agtggacttt atgcaggtag atggttagct
     8101 aaaaacatag ttgcagcagg gcttgctaaa aaatgtatag ttcaacttag ttatgctata
     8161 ggtgttgcaa aacctacttc ggtaagcgtg gattgtatgg gcacaaatac cagtgtaaat
     8221 gacgatgttt taagtgattt tgtaatgcaa aatttctctt taacgccaaa ttggatccgt
     8281 gataaatttc atctggataa accaagtaaa gaaacttttc tttatgcgga tgtagcagct
     8341 cgtgggcaag taggacaaaa ggactatcct tgggaaaaac ttgatgctct agaacagttt
     8401 aaaaagctac tttaaaaaat taacaatatt atacaagctt aaacaaggct tgtataatta
     8461 taaagaatta ataaagttat attaattttt gacttagagg gatatttttc aatatccctc
     8521 ataaatataa aagttaggaa ggaagctaaa ttaatttagc tttggggtaa aaacccctct
     8581 aagtcaaaat attgtttgac agaattataa tataaaataa cttaaattac tttaaaatta
     8641 aaattttaat attatttttt atcattaaat atttctttgg ataaattttt ccaatctttg
     8701 cttaaaagct ttttagggag tataactata ttctctttgc catttgtagc atgataaaca
     8761 ctaaccccat atttacttgc ataaaatttc attaagagtt gctggagttt gtattcgcta
     8821 ctattattaa accaagcatt gttgcttagg gctataataa tttgtgaatt ttgatagttt
     8881 tgttctttgg tagcttcata acaaattgca tttgtgataa tttgattatc taatttatat
     8941 ttgctttgta taggaccttt ggaaaattct tcaatatttt tgagaaaata tttttttgtt
     9001 aagtctttaa aaaatggaat ttcttcacca aagggaacta aaaaatgctt atttaaaata
     9061 tagacattgc cttttttaaa gatataagtg ctattgtaag tatgctcttt ttcaacatga
     9121 aatgctcctg taataatggt gattttataa gataattctt taagcataag ctcatatttg
     9181 gtatttttta aatcaaaagc aaaagcggtt tcaggcaaga ttacaagttc ttttttttca
     9241 tttatagctt gaagtatatc ttgaattaag atatcagaat ttgattttaa attttcttgt
     9301 aaaaattttt gatcttgaga gatattagta ttgatgagtt tgtagtttaa attaagagtt
     9361 tgagcttgtt tttcattata ttgaaatcca ctaaagaata aaataagaac aattgctatt
     9421 ttataatatc ttgatatata accctcatag atgaaatatg ctattaaaaa tatgcaaata
     9481 atgccacgat aacttgggtc aaaaaaacca taaactgtaa aaatccccca attaaaccaa
     9541 tcaaatccta aaggatggat aaaacttatg caaaaaattc cacaaagcct taaaaaatca
     9601 aattttaata aataacataa tctaaaaagt aacccataaa taaaaccaat gataattggt
     9661 ataattggta ctaaatagtt tagattaaaa taaattgaag ataaaccaat ccaccaaaac
     9721 caaagaatcc ctacaaaaaa acctatccaa aaatattgtt tagaagtttt actttttaga
     9781 agtaaaacta acccccaaat agctaaaaat ggactaatgg tttgtgtaaa aatattttca
     9841 aaaaatgata gataaataga atttgaaagt aaaattgcaa taaaaaagac ttttattatt
     9901 ttaaaaatga tagaattagt gtttaatttt tttggaataa aggaaaaata tggcagaaaa
     9961 ttcaatttta acttcattgt tacctcttgt agtgttattt gcaatttttt atttcttggt
    10021 gatcagaccg caacaaaaac aagcaaaagc acataaacaa atgcttgagt ctttgcaaaa
    10081 aggagataaa atcatcacta atggcggact tatttgtgaa gtcgtaaaac cagaggagga
    10141 ttttatcaaa gttaagctta atgaagacaa tgttactgca aaaatttcaa gagaatttat
    10201 agcaaagaaa attgatgcgt aattctaaaa tcaattatcg cttgattatt tttatagcgg
    10261 tatttatttt tggagtggct ttttcactcc cttctttttt gcagtcagaa cgtggtgcga
    10321 agattaattt agggcttgat ttgcaaggtg ggctttatat gctcttaggt gtagataatg
    10381 aagaagctgt aaaatctaaa ataaaatcaa ttgcatcttc attgagttat tcttttaata
    10441 aagaaaatat tttaaatgat ggcttaaata cccatgatga tattttagaa tttactttgc
    10501 ttgataatgc agatattgca aaagttgaaa atttgcttaa agaaataaaa ggaattaata
    10561 tacaaagtga aaatatgcac tataaaattt cttttacctc aaaagaagta aaaaatatag
    10621 aaaattttgc acttttgcaa gcagttgaaa ccataagaaa taggcttgat caatttggtt
    10681 tagcagagcc aacagttgct aaacaaggtg atgataagat tttggttgaa cttgcaggga
    10741 ttaaaaccaa agaagatgaa ctaagagcaa aagaacgcat cacaaaagca gcacatttgc
    10801 aacttatgga agttgatgat tctaaaatgg gtcaagcttc tacaatgagc gatgctgagg
    10861 ctgcgagtta tggactgatt ttagtgcctg attctagaaa tccaaattta aaatatacct
    10921 taaaaagtat acctatttta gatggatcta tgcttactga tgctagagta ggacttagcg
    10981 ataagagtaa ttatcctgtg attaatttta ctttaaatgc cgagggttct aaaaaatttg
    11041 ctgattatac aggagcaaat gttggaaagc gtcttgctat tgtacttgat aataaagtat
    11101 attctgctcc atctatcaat gaacgcatag gcggaggtag tgggcaaatc agtggagctt
    11161 ttactcaaga agaagcacgc gatgtggcgg tagctttaag aagtggagct ttgcttgcgc
    11221 ctgtaaaatt acttgaacaa agaagcatag gaccatcttt aggtgctgat agtattaaaa
    11281 tgagtatgat agccttaatc ggtgcatcag tttttattgt agtatttatg atgatgtatt
    11341 acggtgtggc aggaattttt gcaaatattg caatgctagt taatgttttg gtagtagttg
    11401 ccgttatggc tatgtttgga gcaactttaa ctttaccagg gatggcagga cttgttttaa
    11461 ctgtgggtat ggcagtagat gcaaatgtga ttatcaatga gcgtatacga gaactcttgc
    11521 gagatggagt aaatataaga gttagtatag aacaaggtta taaaaatgct atgagtgcga
    11581 ttatagattc aaatatcact tctttagtta cttcggtagc gctttatgcc tatggaacag
    11641 gagcagttaa aggttttgct gtgactttgg gaattggtat cgttgtttct atgattacag
    11701 ctattttagg aactcatgga atgtttgatt attttatgca acgcatagaa aaaaataata
    11761 atacaagatt ttggtttggt tataggagaa gataatgcag ttttttagcg aaaagaaaat
    11821 ttatgatttt atgagaatgc gttttgctgc tatttccctt tcttttattt tgttttttgg
    11881 ttctatttat ttactttggg ataggggttt gcaatatggc attgatttta gcggaggaac
    11941 tttagttcag cttaaatatg aaaatgcagc tcctataacg caaattcgag aaattttaga
    12001 aaatcaagga acttttcaaa atttatctgt aactgagttt ggaagcaatg aagaagtaac
    12061 tatacgcttt ttaggaagta atgataatgt aagcaatgat ataggtgagc atataagcac
    12121 tcttttaaag gatacgggaa aatttgaagt gcgtcgtgct gatgtggtag gtccaaaagt
    12181 aggtgatgaa cttagaaata aaggacttat ggctatagct gtatctttga tagcaatttt
    12241 aatttatata gcgttgcgtt ttgagtggcg ttttgctctt gcggctataa tcagtgaaat
    12301 tcatgatgtt gtgattactt taggagcaat ttctttattt aaaattgatg tcaatctaga
    12361 tactttggct gctgttttaa ctgtgcttgg atactctttg aatgatacaa ttattatttt
    12421 tgatagaatc agagaaggta ttaaaacaag taaaaaaacc gaacttgcac ctattattaa
    12481 tgaaagtgtt tcagcaactt tatcaagaac ggttttaact tcagggttga ctttagcaac
    12541 cgttgtgata ctttatttct ttggcgggga aatgatacaa ggattttctt tggctttaat
    12601 tgtaggtatt atagcgggaa ctttaagctc tatttttgtt gcaagtccga cattattatg
    12661 gtttaaattt agtgtgcttg agtttagaaa taaagaaatt gaaaaagcaa aaagaaaaca
    12721 agataaagaa cgcaatcgtg caatgtatga aaaaggaact gtgtaaggag aatttatggc
    12781 ttatgaagca agtttaatag aaaaaaaatg gcaaaaaatt tgggatgaaa atgaatattt
    12841 tgagccaaaa gatgacttaa atttgcctaa aaaatatatt ttatcgatgt ttccttatcc
    12901 tagcggacgc attcacatgg ggcatgtaag aaattatact ataggtgatg ctttagcaag
    12961 atattatcgc aagataggtt ttaatgtttt acatcctata ggttttgata gttttggcat
    13021 gcctgctgaa aatgcagcta ttaaacataa aattcatcct aagtcatgga cttatgaaaa
    13081 tatagcttat atgaaaaaag aacttttttc tttaggtttt tctttttcta aaaaaagaat
    13141 gtttgctact tcagatccac tttatacaaa atttgagcaa gaatttttta ttaagatgtt
    13201 tgaaaaaggt ttgatttaca ctaaagaagc aaatgtaaat tggtgtgaac aagatcaaac
    13261 ggttttggct aatgagcaag ttgaagacgg aaaatgttgg cgttgtggtc atgaagtggt
    13321 gcagaaaaaa atgccaggtt attatgtaaa aattactgct tatgctgagg aacttttaaa
    13381 agatttagaa gaattaaaag ataaatggcc taatcaagtt ttaactatgc aagaaaattg
    13441 gattggtaaa agcgaaggtt tggaattttc tttaaattta gacgaagaaa gtaagcaaaa
    13501 aaccaaagaa agttctttag aagtttttac tacaagagca gatacaattt atggagtttc
    13561 gtatatcgct ttagctccag aacataagat tgttcaaaat ttgctttcac aaaatttatt
    13621 aaatcaagat gtattaaata aaatcaaagt tattcaaaat caaagcccaa gagaaagaca
    13681 aagttctgaa aaagaaggtt attttttagg aatttatgcc attcatcctt taagcggaga
    13741 aaaaattcct ttatgggtgg ctaattttgt cttggctgat tatggtagtg gagcggttat
    13801 ggctgttcca gctcatgatg aaagagattt tgaatttgca acaaaatata atcttgccat
    13861 caaacaagtt attcaaactc aagaaaattt accttatatg caaaaattag gaaaattaat
    13921 taatagtcaa gaatttgata atcttgattg taatgaggca agattaaaaa ttatttctca
    13981 gtttgaagct aaaaatatag gaaaaagggt tgtaaatttt aaaattcgtg attggggtgt
    14041 ttcgcgtcaa agatattggg gtgcgcctat tcctatgatt aaatgtcaaa gttgtggtat
    14101 agtacctcaa aaactagaaa atttacctat tactctgccc gaagatgtgc aaattacagg
    14161 tgagggtaat ccacttgata aacatccaac ttggaaaaat tgtatctgtc caaaatgtgg
    14221 taaagaggct caaaaagaaa gcgatacttt agatactttt tttgaaagtt cttggtattt
    14281 tgcacgtttt gcaagtgatg agaaaacttg gcaggaaaaa gctttagatg aaaaaagtgt
    14341 aaagtattgg atgagtgtgg atcaatatat aggtggtatt gaacatgcaa tcttgcattt
    14401 actttatgcg agatttttcc aaaaagcttt aagagatttg ggttatttaa cacaaaatga
    14461 accttttgat agacttttaa ctcagggtat ggtgttaaaa gatggtgcta aaatgtcaaa
    14521 atcaaaaggc aatgttgtag atcctgatga gattatagaa aaatacggtg ctgataccgc
    14581 aagacttttt atactttttg ctgcgcctcc ggctaaagag cttgaatgga atgatgatgc
    14641 ggttgaaggg gcttatagat ttatttgcaa actctatgat agggcgcaaa atgttaaaaa
    14701 aggtgagctt gtagaattaa aacaagaaaa tttaaacaaa gaagaaaaat atgcaagatt
    14761 aaaggtatat gaagctttga aaaaatcttt tgaagtttat catcaaagtt ttgcttttaa
    14821 tactttaatt gcagcttgta tggaagcttt aaatgcttta gcactttgta aaaatgaagc
    14881 tttggagcaa gaggcttttt atattatttt aaatatttta gagcctatta ttcctcatgt
    14941 ttgttttgag cttagcgagg agctttttaa atgtaaaaat ttcaaaaaat tagaacttaa
    15001 agaagaggtt tttgtaaaag atactttaaa tttagctgta agtattaatg gtaaaaaaag
    15061 ggctgaattt gaaatttcaa gtagtgcgag caaagaagaa attttagctt ttgcaaaaga
    15121 aaatactgct aaatggcttg aaggtaagag tatagttaaa gaaatttatg tggaaggaaa
    15181 gctagttaat ctagtgatta aatgaaaaag attttaattt tttgtatagg tttattttta
    15241 ggtgcttgtg gatatattcc tacatcaaaa atcgctaata atattttcga tgagaaggtt
    15301 tatgttaatg ttgaattaag tcaacaagac ccaaaaaata gtatctatgt tgccgatact
    15361 ttaaaagaaa tggtaatttc aaaattaggg cgtaaacttg ctttaaaaca cgaggcagat
    15421 gatgtaatta atgttaaaat gaataattta gaatttattc ctttagctta tgataaaaat
    15481 ggctatgtta ttagttataa agctaaatta aatttagatt ttaatgttgt ctttaaagat
    15541 ggttcaagtc aggcttttag tacaagtgga agttataatt ttgaaatttc tccaaatagt
    15601 attattagtg attctgcaag gtatgaggct attcgagcag cttcaagcga ggcatttgat
    15661 gagtttattt ccgtaattgc tattaaaggg caaaaacgtg attccaaata ctaatgaaat
    15721 agcaaagcaa actttaattg cattaaaaga aagaaaacta aaaccaactc ctgaaaatta
    15781 tacggaaatt tttgaagaat tatctttaaa atatggtatc acaagctcaa ataaagctaa
    15841 acttgacaaa tacaaaacct tgcttttgcc gatttatcaa caagaattaa attctaaaac
    15901 tataagaagt ttagaagaac taattagttt tttaatttct gttttaaata gacaaagcgg
    15961 aaaacaattt agtgaatttt ttgatttttt atataccata tctaaaactt tgcaaataag
    16021 taaggataaa aagataagag atttggctaa ggtgacttcg attagaattt ctaaaactat
    16081 ggatagtgaa agtatttact tgcttactaa aaaatggaaa gagcttgaaa gaaattatga
    16141 tgaaaatgac ttagaagaac aagctcgtaa atatggcatt agtaaatatg atgattatga
    16201 tagcgtgatt aaaaaactct tagtcaagct tgaagagcgt agttatgagc actttagtga
    16261 attattatgc ttgggtttaa atccttcatt ggtagaagat ttaaaaattc aaggttttat
    16321 acaaaattta acacaaaagc cttttgtaat aggcgaagaa aattttaaaa atgaactaat
    16381 ggaatttata aatcatcgca taatggttga taatatgtat gtccaaaaaa atttaaattt
    16441 ttttaacgat aatctaaaaa aaatctatga attgcttgtc ttacttaata aatcgaatga
    16501 aaaaaatatg gattttatca ataccttaaa accagatgaa aatggggaag taaaacttag
    16561 ttttgaggat ttaaaactaa aatttaaaca acttggagaa aaaattacat ctttaaataa
    16621 tcaaattgaa ttcacgcaaa gcttagaaga gagagaggct tggagtgttc ttaaagagct
    16681 tgataaaatg gatgaaaatt ttaataagta taaagttaat tattctttag ctttattttc
    16741 tatagtaaat taccgtttca ttatggaaaa atatggtatg ggaagtttga atgaaatttt
    16801 tgttcgattt aaaaaaattt taaaagattc ttgtagtgaa tttgatgaac tgtggatgat
    16861 agatgaaaag agttatttga ttgtttcgcc aggaaaaagc aaagatgaaa ttacacagct
    16921 tgtaaataca aatcttaaaa ctatagaaaa ttttagattt atttataagc aagatattat
    16981 aactcctaaa attcacgtgg cttatcttga taagcaaagt aagccaagta ttaatatttt
    17041 agatgagtta ataaagcaaa ttgcagcggt taatgaacaa cataatgaaa gttgagaatt
    17101 ttttagctca aaaaagtata aattacgata aaattgatcg ttttttgatg tttagaatgt
    17161 atgaaaaata taagaaatat tttaaaaata ttcctataat ccaacttata ggcacaaatg
    17221 gtaaaggtag cacgggtaga tatttaaccc aacttttaga aaatttaaat tataaaatag
    17281 ggcattatac tagcccgcac attttcagtt ttaatgaaag attttatctt gatggtaaga
    17341 ttgcgaatga tgaagaatta gaacaagctc atataagact tgaagaaatt tttaaacaag
    17401 acttgcaaaa attaagttat ttcgaatatg ctactttttt agctatgatt ttatttcaaa
    17461 aatgcgattt cattgtttta gaagcaggag tgggtggaga atatgatgct acttctattt
    17521 ttgaaagaag aatgagtatt tttacaagaa ttggatttga ccatattcaa attttgggca
    17581 attctttaga agatattgca agaaccaagc ttaaagttat ggcacctata gcacttataa
    17641 gtgatgagca agagcaaaat gttttaaatt tagcaaaaaa aattgctttt ttaaaaaaag
    17701 ctaatttgca agtttcctcc ttaaatcctt ttttgaaaga aaaatttgag atttattgta
    17761 aaaagtttgt tttaccttat tttttaaagc ataatttaaa gcttgcatta aaggcttgtg
    17821 aaattttaac ttcgcaagaa aaaaccttag aagctttaaa aaagttacaa gagttaaatt
    17881 tacaaggaag atgccaagaa atttctccaa atttttttgt tgatgtgggt cataatccca
    17941 tggctgctaa ggccatgctt gataaatttc aaggagaaaa aataaatctt atttataatg
    18001 cttatttgga taaggatatt tttcaaattt taaatacatt aaagcctatt attgatacaa
    18061 tacaaatata taaatataaa agtgcagaac gaaagctggc cgatgatgaa atttatagta
    18121 ttgcatcaaa gctaggcatg caatgtaaag aatttgtaaa attagaagag aataaaaaaa
    18181 atctagtttt tggttctttt atgctggtag aaaatttttt aaaggagtgg tgtggtaaaa
    18241 aataaattca ctattaccat tacagatatt aacggttcaa gacattttta tttaaatcaa
    18301 ataatcaaaa aaatagtttt ttatattatt gcttttattg ttttattttt agtttttagt
    18361 ggtttttata tcaaatatct cgatagcaaa cttagtgata tcagtgaaaa gcgtgaggag
    18421 cttttgaaaa aaagcaaaga attggaatta tctaattcgc aaatgcaaaa aagcatagaa
    18481 gaaaaaactc agcagtatgc agctatagaa gataaaatag cttcttttga agaggctttg
    18541 ggcttagaag cagaaaataa tcttacaatt agtgcaagac ttgataatct tcagcttacc
    18601 aatgagcagc aacttggaat tttggggcaa attcctaatg gatggcctat tgaaaataaa
    18661 ggcattacag gaaattttgg ctggagagag catccgcttt taaaaagaag ggaatttcat
    18721 cctggtattg atttaagagc agaaattggt actcctattt atgcaccagc aagtggagta
    18781 gtggaatttt caggttatag tgataatggc tatggctata atgtaatttt attgcataat
    18841 tttggtttta aaacagtatt tgctcatatg atgcgcaaag aagtggtcaa agcaggtcaa
    18901 tttgttaata aagggcagtt gataggttat agtggcaata caggtctttc tacggggccg
    18961 catttgcact atgaggtaag gtttattaat aaaactttag aacctttgta ttttttaaat
    19021 ttgcaaagaa aaaatatgaa tgattttttt aatcaagaaa ggagagttcc atggcaatct
    19081 ttaataaagg cggtatcagc ccaacatcca gctctagctc agaaacaaca gtaatttctt
    19141 caggtgcgag aattgagggt aaattttatt ttgcttctat gcttcatgtt gatggagagt
    19201 taagtggtat tattcattct gaaagcattg tggttatcgg aaaaaatgga aatttaaaag
    19261 gtgaattaca agcagataaa attgtagtaa atgggtgttt tgaagggcaa cttgaggcta
    19321 atagtttaga aattttagcg ggcggagttg ttaatggtga tatttcaacg caaaaaattt
    19381 ctatagaaaa tggcggtcgc tttaatggaa ctagtaaaat taaagaagat actatcaaac
    19441 ttattgaaaa taacaacgaa gaataatgca agcttcattt tatgaatact tacaaaatcc
    19501 aaaaatttgt gaactttttc tttgtaaaga tgaaaaacaa gcagatttac tcgctcaagt
    19561 ttcacgattt aagggtttaa aaacctttgt tttacctgat tttagagcgc agtttggaga
    19621 tgatttaagg gctttttcta aagaactttt tgatctttgt aagattttaa atgcttatca
    19681 taaagaagaa gaaaaaaaaa tccttatttc tcctttaaat actgttttaa aaaaacttcc
    19741 ttcaaaaaaa catttacaaa attatcatat cgataaaaaa caaaattttg atttgaaatg
    19801 ttttgaagat gaaatttcaa gattgggata cgaatttgta gatatagttc aggataaagg
    19861 tgaaatttca attcgtgcgg atattattga tattttttgt atcaatgaag aaaatcctat
    19921 tagaatttta ctttttggcg aagagattga aagtataaga tattttgatt tgcaaagtca
    19981 aaagtctatt cctaacgaac tagaacattt tgaaatttgt ccttttttaa aatattttga
    20041 caaagaaaat tatgaaattt ttaaggacaa attagaagat tttcaaagcg atgctttaat
    20101 acatgatatc aattctttag gcttttggtg tattgatgat ttttttgatt atttagaact
    20161 tgatttttta gcttgtgaaa agtttgatat taatgaatat gaaaaagata taagttttgt
    20221 gaatgcaaaa attttacctc aagctaaaaa atttaaagaa ttgcaaagtt cttacaataa
    20281 agattttttt gaatttcata aaaataaaaa aatcacactt ttagctaaaa acgaagcttt
    20341 atttaaagct ttagagcttg aagatactca aaatatccat tttgtaaaaa gtgatttaag
    20401 gcttaatctt attagtcctg aagagctaat tatttcttta aatcaaaaag aaaaacaaaa
    20461 aacaagaaaa aaagctagtt tgattataga tgagcttaaa aatggggatt atatagtaca
    20521 cgaagattat ggggtaggta aatttttagg tcttgagatg atagtgataa gcggagcaaa
    20581 aaaagagttt gttgctatag agtatcaaaa ttctgataag cttttattac cagtggaaaa
    20641 tctttatttg attgataaat atttgggcgt gagtggatct attccaagct tagataaact
    20701 aggtaaaaca agctttatta aacttaaaga aaaattaaag actaaacttt tagccatagc
    20761 ttctgaaatt gttattatgg cggctaaaag atctttggtg caagcaaaaa aaattacagt
    20821 ggatttaaat agacagactg attttatagc tagtgcgggt tttatttata caagcgatca
    20881 agataaagcc tgtcatgaaa ttttgcaaga ttttcaaagt ggaaaagtca tggataggct
    20941 tttaagcggt gatgtgggtt ttggaaaaac agaagtcgct atgaatgcta tttatccagt
    21001 agttaaaagt ggattttgcg catttttatt tgcgcctacg actttgcttt ctcatcagca
    21061 ttataaaacc ttaaaaaagc gttttgatcc ttttgatata aaggttttta aactggatcg
    21121 ctttacaagt agtgcagaaa aaaaacaagt tttacaaaat ttaaaagaaa ataaagcttg
    21181 tgtagttgta ggaactcatg cacttttaag tgtagaatgt gaaaatttag cccttgttat
    21241 tattgatgaa gagcataaat ttggagtgaa gcaaaaagaa aagcttaaag aaatcactca
    21301 aaattcacat attttatcca tgtcagcaac ccctatacca agaagcttaa atcaagcttt
    21361 aagttctata aaatcttata gtgttttgca aactccacca gaagatagaa tggatgtaag
    21421 aacttttgtc aaagaaaatg atgacgcact tttaaaagaa gctatagcaa gagagttaag
    21481 acgtggtggg caaatttttt atattcataa tcatattgca agtatagagc aatgtaaaaa
    21541 gcatttatta gaactttttt ctactttgcg tattttgatt ttacattcta aaatcgatgc
    21601 caagatgcaa gaagaagaaa tgttgaaatt tgaaaacaaa gaatatgatt tgcttttaag
    21661 tacctctatc gtagaaagtg ggattgattt accaaatgca aatactatca tagtagaaaa
    21721 aagcgatcgt tttggcatgg ctgatttgca tcaattgcgt gggcgtgtag gaagaagtga
    21781 taagcaaggt tattgttatt ttttaattga agataaaaat gctatcacaa aagatgcttt
    21841 aaagcgtcta gtttccttag aaagtaattc ttttttaggc gcaggttctg ttttggctta
    21901 tcatgatctt gaaattcgtg gcggtggaaa tttattaggc gtagatcaaa gtggacatat
    21961 tgagcaaatt ggatatagtt tatatcttaa aatgttagaa gatgaactta atgctttaag
    22021 taaaaatgaa gtggatcaaa aagaaaataa acttgattta aaactcaatg ttaatgcctt
    22081 tttaaacagc gaacttatca gcgaagatcg cttaagatta gaactttata gaagacttag
    22141 caagtgtgag caagttcatg aggtttatga gatcgaaagt gaaattgaag atcgctttgg
    22201 aaaacttgac atttatacta agcaattttt atctttgatt attattaaaa ttttagcttt
    22261 aaataaattt aaaagtatta gcaattatga gcaaaatatt caatttactg ctttaaatga
    22321 tgaaaaagaa ctcatcaagg caaaaagcaa agacgatgat gatattttag aggcaatttt
    22381 gacgcattta agaaaggctt aaaatggatt ggaataaaac ttatgcagca atttatagag
    22441 caagaaaaga ctatttaaag cctatttttg aaatcgatcc tatcacttta aaagatttag
    22501 taggtatgga aagtcaaaaa aaagcacttt atgaaaatac tttaaatttc attcaagata
    22561 agggagcaaa tcacgcactt ttatggggat ctaagggcac tggaaaatca agtttaatta
    22621 aagccatatt taacgaattt aaagatcagg gcttaagact tgtcgaatta aataaagaag
    22681 atttatttgc cttagtagat atcatcgatg aaatcagatt agaaaatttt aaatttatac
    22741 ttttttgtga tgatttttct tttgagaaag gagatgatag ttataaattt ttaaaacctt
    22801 tacttgaggg aagcatagaa aaagccccaa ataatgtaat tatttatgcg agttcaaatc
    22861 gtaggcattt attaagtgaa agtattgctg ataatcttga tacgcaaatt gcacatacag
    22921 aacttcattt aagcgatgct gccgaagaaa gattaagctt gagtgataga tttggtttgt
    22981 ggttaagttt ttatcaggga aatttagaag agtatttaaa gatgatagat ttttatttta
    23041 aagattattc ttgcgataaa gagcttttac acgctaaagc taaagaattc gctactctaa
    23101 gagcaagtag aagtggtcgt actgcaaagc aattttattt ggcttttaag gagaatttta
    23161 aatgactgga gcacgaattt ttaccaagct tttaaatttg gatttaaatt atcatgattt
    23221 tgattggctt gaaaatcaag gattgagtga atttgagctt ttaatttctg tgattttaac
    23281 tcaaaataca aattggaaaa atgtcttaaa agctttagaa aatttaaaaa aagaaaatat
    23341 tgtaagctta gaacaaatca atactttatc caatttagaa cttgcaactt taatcaagcc
    23401 tagcggattt tataatacca aagccaagcg tttaaaaggc ttagtagaaa gtatcataaa
    23461 cacttatgaa aatttagaaa attttaaaac aaatgtaagc agagaatggc ttttaaatat
    23521 caaaggtttg ggttttgaaa gtgttgatag tattttaaat tatctttgca aaagagagat
    23581 tttggttgta gataattata gtttgcgttt ggctttttgc ttaggctatg agtttgaaaa
    23641 ttatgaagaa ttaagagaat tttttcaaag tggtatagag agtgagcaag aaaatttgtg
    23701 taaaatttta gggagaaaat gtgagcttta cgaactttat caaatttttc atgctttgat
    23761 tgtagctttt gcaaaacaga gttttaaagg acaaaaatta agccctaagg gtgaagaatg
    23821 gatcaaaatt ttaaaggaag atttatgaaa gcaaaaggaa gcgaacttat acctgtttta
    23881 actatagcag gaagcgattg tagtggtgga gcagggatac aagccgatct taaaaccttt
    23941 agtgcgcaca atctttttgg tatgagtgtg gttttaagtg tggtagctga aaataccgca
    24001 agggtgattt ctgtacacga tatacctact caaagcgtag atgaacaaat gcttgccgta
    24061 tttgaagata tagtgccaaa ggcaactaaa atcggaatga taggttcttg tgaattaatg
    24121 agctgtgtag ctaaaaattt aagcgagttt aaacctcaaa atgtagtgat cgatcctgta
    24181 atgtttgcta aaaatggcta tgctttaatg ccgcaagaaa attgtgattt tttcaagcaa
    24241 accatagtaa aatttgcaga tattcttacg cctaatattc ctgaagcaga gtttttatgc
    24301 ggttttaaga tcgctaatga agagcagatg ataaaagcag ctaagcattt atgcagcttg
    24361 ggggctaagg cagttttact taaaggcgga catagtgaag aaaatgccaa tgatgtgctt
    24421 tatgatggaa aagaaattta tattttaaaa ggcgaacgca tagaaactaa aaatactcac
    24481 ggtacaggtt gtacgctttc ttcggctatt gctagtaatt tagctaaagg caaggattta
    24541 ttttatgctg ttagtgaagc taaagaatat gtaagaaatg cgatttatta ttcactcaat
    24601 cttggaaaag gttgtggtcc tacaaatcat tttttcaagt ttttagatga aaaataaatt
    24661 agatcttagc ctttatttag ttgcttctca gggaaataaa agcgaggagt gttttttaaa
    24721 tactttagaa aatgctataa aaggcggagt aagtatcata caacttcgtg aaaaagagct
    24781 taatgcaaga gaattttata aactaggctt aaaggtgcaa aaactttgca aggcttataa
    24841 aatacctttt ttgattaacg atagagtgga catagcttta gccttagatg ctgatggggt
    24901 gcatttagga caggaagatt tagaagtaaa actagctaga aagcttttag gagatgaaaa
    24961 aatcataggc ttaagcctta aaaaactaga acaacttgag ttcatacaag gagcaaatta
    25021 tttaggttgt ggagctatca aggcaacgcc tactaaagaa agttcgcttt taagccttga
    25081 gcttttaagc caaatttgtg ataaaagtcc tataggggtt gtagctatag gaggggttga
    25141 taaagcagtg cttgatgagt taaagggtat aaatttaagc ggcgtggctg tggttagggc
    25201 gatcatggat gctaaagatg cttttttggc agctaaagag ttaaagcgta aaatctatga
    25261 aaatttacct cttaaatgaa actcctttta aaggggtgga aaatcttatt ttaaatgaga
    25321 ttatttttta cgattttagt atagatttga gtttgtatga tgctttaatc tgtacttcaa
    25381 aaaatgcttt aaaagcctta caaaatgcaa aaatcacttt aaattttaaa ctcaatttat
    25441 acgctgtagg acaaagtaca gctcaatacg ctaaaaattt aggttttaaa aagattaaaa
    25501 ttccatcaaa ggcttatgga aaagatcttt ttcttgaatt taaagaggaa ttaaaaacgc
    25561 aaaaatgttt gtatttaagg gctaaaaata ttgtttcaac tttaaatttg gatcttaaaa
    25621 atgtaggtgt ggatttagat gaagtgattg tttatgaaaa tgtttttaaa aaaggtgaca
    25681 aaaaacttac tcatcctgct atttttatat ttacctctcc tttaagtgta gaaaattttt
    25741 taaaatttta tagcttaaaa gaagaagata aggttgtagt tataggacaa agcacagcaa
    25801 agaagctttt aaattttaaa aatctttata tatgcgaaaa tcaaagtctt ttagagtgtg
    25861 ttaagcttgc taagactttg gtttaatttt ttaaattcca aaaattttct ttgggataaa
    25921 taataatgct ttttgtgagt aaaatttcat cattgacgtt tttatcacga tttaaagcaa
    25981 tactaatgtg ggctataata acaccatctt tgcttaaatt tgcatcggga ttgaagttgg
    26041 aaaatttaaa attaacacat tgtgcaatag gataaaaata ttttatttta atcaaagctt
    26101 ttgtgtaatt aaaatatata ttatctaaac attctttatt ttcttgcttt gcttgatata
    26161 aaaaatattt agaaaattgt gttgcattgt gacttaaaat ttgagcttga aggtagtaat
    26221 aactatcttg gattattttt ggagtatagc tggatatgtt taaggtcaag ctcatccata
    26281 gacttattag cagtattaaa aaaattgtcc aaattaaaac ataagctttt ttcacagtaa
    26341 aattcttttt tcaaggcaat gttttgtttg tctttttagg caaattttta atttattgtt
    26401 ttgcaggtta aatgagctta tgtttttaga aattaatcct tgttggttta attgttcatt
    26461 aaattttggc tttatttcat atataagttc ttcattttgc aatttgataa ctaattgagc
    26521 ttgcaaagga ataaaactac ctgtaaaatt tgcagatata ccattttcca agatagatat
    26581 tttttcaatc ttattaattt tataagcata gctaatatgt tcattgtcgt tatataaatc
    26641 ttttctattt tggagttgtg ttttaaaatc agaatgaggt gaataaagtg tatgattatt
    26701 ttctaaaata agagcagaat taataagata aagtttatta tcttttaggc taattaactc
    26761 atcttttaaa agacatttta atgtattctg tgaaaatgta atattaatac aattttgtat
    26821 taatttttct attttaagca agtttaaatg tgcttgagtg ataagattgt ttgtatgtaa
    26881 agcagtaaaa tttaaatgat aaaaatccat taaaggtttt gaaagtaagc tagttataaa
    26941 agtaaaaagt attagtgata ttataagttc aaaaagtgta aaagctttgc tcattcttta
    27001 aaataaacgc tataattttg atcttgaaag tataattttt gaaattgaaa tataccgtca
    27061 ttaacaaact gttcttgtaa aactataggt tttaaggctg aagtttgaag tatgatggtt
    27121 ttaaaaatag gcttttcata taattcttct tgaagtttat agagtctttc aaaaatattt
    27181 aaattttcat agtttttgta aagttgaata tagtaataaa aaatgccaat gaaaattaaa
    27241 gatatgatcg ttatagcact aatgctttct ataagtatga aagccttttt catttagcgc
    27301 tgctagcatt tatggcttca aaaaaacttc cgcgaattcc tttttgttcg agtattttta
    27361 tgccttttat tgtaactccg ccaggggagc aaatattttc tttgataata gctggatgtt
    27421 catgttctag taaagcatta gagcttttaa ataaagagcg cgtaagattg agactaagtt
    27481 cttttgacaa accttcataa actccagcat tagcaatgct ttctgctata agtgctaaaa
    27541 aagcaggagc gcagccgcta atcgccatag ctgcattcat ttgtatttca ttatctaatt
    27601 tataagccga gccaaaagtt tttaaaatgt ctaaaatttc attttcaaaa tgagagtttt
    27661 taagtatata tggtgtggtt gaagccttgt atttagctgc tgtattgggt attattctaa
    27721 cataattttg agctttgatg gtttgtagtt tttcaaaatc aacattggct aaaacagaga
    27781 ttaagatacg tgcttgtcct tttagcattt gagcaatatt ttctaaagca taaggtttaa
    27841 atgctaaaat aacatcttta ccttctatgt taaaatcttt gtaaagtaag gttttaaagc
    27901 cttctttggc gagggcttga agtttttcta tacttcttcc tactatacaa atttcataat
    27961 catcttttaa cccataggct aaggctgttg ccatagatcc atttgcaagt atatagagca
    28021 ttatttttta atataattag caatttgatc agcttgaaaa aagtcgggat aattaactgt
    28081 atctagtatc acttgtacca tagtattatt atcaagatta atgactactg gagctagaaa
    28141 attcactgtc gattcttcaa tgctttttgc tatggctact atattaaaaa ttttcatatt
    28201 agattcaggt gttaaagaaa gaagctcttg ataataagtt ggtatatcaa attcataatc
    28261 aggtctaatc aaataaggat taattaaaac aaaagaaaag tctttaccat caagactttt
    28321 aagtcttaca aatacttcat cgatagttga aaattccata tttttggttt cttcaaaacc
    28381 taagataggg catttaacag ctagggtcat gttttctcct caagttataa tgtttaatat
    28441 tttaacataa aataagcaat aatcattcca aaattttaaa ttatttaatt aattttatta
    28501 taattttaga agaacataat tataaaatcg ttaaaatata tatttttgag aatataaatc
    28561 aaggtgaagt atgaaaaaag gtattttttt attggttttt ttaagtgttt tttttagtgc
    28621 gtgtagtacg aaaaatgatg aaggtttata caatcttagt gctagtgagt ggtataagca
    28681 aattattaaa gatttgcagg acaaggattt ggaaaaagct gatgatcatt ataatggtat
    28741 ggcaagtgag catgttgccg atcctttatt ggaaactact ttaattattt tagcacaagc
    28801 tcatatggat gaagaggaat ataagttagc tgaattttat ttagatgaat ataataaaaa
    28861 atttggaaat tcacgcaatg ctgattatat tcgttatctt aaaattaagg caaaatttga
    28921 tgcatttgca gtgccaaatc gtaatcaggc tttaatgctt gaaagccaaa aagaaataga
    28981 tacttttttg aaagattatc cttatacaga atatgaacct ttggttcaaa caatgcttac
    29041 aaaatttaat ttagcggttt tttatcttaa tagtactata gaaaatctat accagcgcat
    29101 agggcatgat gaaagtgcac aaatttataa acaaagactt caagaaagtg aattttatca
    29161 gcaaagtatt atcaaacctg agcttccttg gtatagaagt atatttgaaa gattttaata
    29221 aacaaggaaa ataaatgcag attgaagaga tacaaaatta tccagcaaat ttaccagtat
    29281 tggttgaaga tgaattattt ttatatcctt ttatgataac tcctattttt attaacgatt
    29341 catccaatat gaaagcttta gatcttgcga ttaaaaatga tagcatgctt tttgttgcac
    29401 cttcaaagtt ggaaaatgga agaaattttg atgaaattta taattgcgga gtgattggga
    29461 ctatcatgcg aaaagttcct ttacctgatg gaagggtgaa aatacttttt caaggatatg
    29521 ctaagggtaa aattatagag caaatttcta ataaaccttt agaagccaag atagaactta
    29581 taaaagaaga ctttttagaa ggaactaaaa aagaagcgct tcttgaagtt ttaaaagaga
    29641 aggtaaaaaa tttggcaaat attagtcatt atttttctcc ggatctttta agaacaattg
    29701 aagaaggttt tgatgcgtct aggatttgtg atttgatttt aaatactgtg cgtattaaaa
    29761 aacaagttgc ttatgagttt tttgttttaa cagatcttga gcaaaaatta gtaaaattaa
    29821 tagatttaat tgcccaagaa atagaagcca ataaaattca aaaagaaatt aaaaataaag
    29881 tacattctcg tattgataag gtaaataaag aatatttttt aaaagaacaa ttaagacaaa
    29941 ttcaaaaaga gcttggttct gatacacaaa aagaagatga ggttagagag tatcaaaagc
    30001 gtctggagtt aaagaagaaa tttatgcacg aagacgctta taaagaaatc aaaaaacaaa
    30061 ttgaaaaatt cgaacgcatt catcaagata attccgaagc atcgatgatt caaacttaca
    30121 tagaaacagc attagatatt ccttttgaaa aaatttctaa gaaaaaactt gatattaaag
    30181 aagtttcaaa acagctcaac catgatcatt atgcattaaa taaaccaaaa gaacgcatag
    30241 aagaatattt tgcagttagg gaacttttag aaaaaagaaa aatagcagaa aaagatggtg
    30301 ctaaagttat actttgtctt tatggacctc ctggcgtggg taaaacttca ctggcaaatt
    30361 ctgtttcaaa agctttaaaa agagagctta ttcgcatagc cttaggcgga cttgaagatg
    30421 ttaatgagct acgtggtcat cgtagaactt atataggcgc tatgcctgga cgtattaccc
    30481 aaggactcat agaggcaaaa caaattaatc ctgtaattgt attggatgaa attgataaat
    30541 taaatcgcag ttttagaggc gatccaagtg cggtgctttt agaaatttta gatccagagc
    30601 aaaattctaa atttagggat tattatttaa attttaatat tgatttaagt aaagtcattt
    30661 ttatagcaac agcaaatgat attagcaata ttcctgcacc tttaagagat agaatggaat
    30721 ttatagaact tagctcttat actccaagtg aaaaatttca tataatgaaa aaatatttag
    30781 ttccagatga gcttaaaaaa catggcttaa aatccaatga attatctatt gatgatgaaa
    30841 ctatagagtt aatcattagt gattatactc gtgaatcagg agttagaaat ttgcgtcgca
    30901 aagtggcaga gttgtgtcgt aagagtgcta aaaaactact tttagaaaat attaaaaaag
    30961 tcattattaa tacaaaaaat ttgaatgaat ttttagataa aaaagttttt gaaatagaaa
    31021 aaaataatgg agaaaatcaa gtaggtcagg ttaatggttt ggcttggaca agtgtaggtg
    31081 gagatgtttt aaaagtagag gctgtaaaaa ttaaaggtaa aggagaatta acgctcacgg
    31141 gaagtttggg tgatgtaatg aaagaatcag ctagaattgc ttttagcatg ataaaagttt
    31201 taatcgatga aggaaaaata aaaataccta aaaaaataat tatcgatcct aaagttaatg
    31261 tttatgatag ttataatatt catatccatg tgccagatgg agctactcca aaagatggtc
    31321 caagtgcggg cattacgata agcacagcta ttgcttctat ttttagtgat aaaaaggtta
    31381 aagcagatgt tgcaatgaca ggtgaaatag atttaaaagg aaaagtttta ccaataggcg
    31441 gattaaaaga aaaattaatt gcagcttata aagcagatat aaaaacagct ttaatcccaa
    31501 gaaaaaatta cgaaagggac ttaaaagata ttcctagtga ggttagagac aatatggaaa
    31561 tcattgctgt tgatactttt agtgatgtct tagaatatac tttgatttaa ttttattttg
    31621 agaataaatg tataagaaag caaacttttt acaagtttgc ttttaaaaga ttatagtcct
    31681 tcaaaaggat tattgattac ttcttttcta tccactatat aagggataag agctacatgt
    31741 cttgcacgtt tgattgcaac ttctaccatt tcttggtatt ttttgcttgt acctgttaaa
    31801 cggcgtggca tgattttaaa tctttcagat aaagcatgtt ttaacattgc tgtatcttta
    31861 taatcaataa attcaacttt tgcttcagtg tatttgcaat atttgcgaga gtattttctt
    31921 ttttctgcca tagtttatcc tttaaaatgg taaattagta tcatcgctat cataagcatc
    31981 gatatcaatt tcttttaatt tttcttcgtg ttgtgggttt tggtttcttt gtggagtagg
    32041 gtttgttttt gctttattaa aattttgatt ttcactcata taaggatcat agctttgatt
    32101 ttcatagttt ccactataat tgttgtttga aaagctatta ttgccaaaat ttccgccttg
    32161 ttgtggagca ttggaattgc caagcatttc catattttca acttgaatgc tatgtttaga
    32221 gcgattttgt ccattttgat cactccattg ttcaaatctc aaacgtcctt ctatgagtac
    32281 ttttgaacct tttgtaaggt attggtttgc aacttctgcg gtgcgaccat aaaaacttat
    32341 atcaataaag caagtttcct ctcttttttc tccatttgtg gtaaatcttc ttgttactgc
    32401 gatagcagaa gctccaatag cactaccgct ttgtgcataa cgcatttcta tatcgcgtgt
    32461 aagatttcca accaaaacaa ctttgttaaa catctttttc cttattgaat ttcaggagca
    32521 tctaaaggtt tgatttcttt tttagattgc ttaatcccgt ggcttagttt ttcccaagct
    32581 gcaatttctt ttttgttttc atattttacg attaaaaatc ttattacttc ttcagtgatt
    32641 cttaacaccc tttcaagctc agcgatcaag tttgtaggag ctttgaaata aatcacaaaa
    32701 taagttcctc tttcatattt tttgatttta tacgctaatt ttctagtgcc cattggaaca
    32761 acagtttcaa tttctgcacc atttttgatt aggacttctt taacgaattc caactttgca
    32821 ttcacttcct cttcggtaag cgttggtttt aagataaata aaacctcata atgtttcatc
    32881 ttttctcctt atggatataa agcccatttt tatgagcaag gattttgcat taaagcaaga
    32941 gcaaattata ctataatata cttaatttat acttcaatga agttaatatg taaattatca
    33001 ttgccattat caaacaatta ataagcaatg gatttgtttt gatttacttt cgactgttat
    33061 aatgcaatgt tttttaaaat acgaccttaa ttgagcaagg attaaaattg aaaaaaatat
    33121 tggttttgtt gtttatgtgt tttagcagtt tatttgcaaa tgatgatttt atttatgaaa
    33181 aaagtaaata taattttaat gagctgataa aaagagttga gcaagagctt aaagatagaa
    33241 atttaacgat ttttgcaaaa tttaatcact atcaaaatgc attagatgtt aatttgacct
    33301 taaaatcaaa tacagttata gtgtttggta atcctattgt aggaacttat ttgatgcaag
    33361 aaaatccaat gataggtatt gaattacctt taaaaatttt aatctggcaa gatcaaaata
    33421 atgaaacttt tataggttat gtcagtttaa aatcaaaaat acaaaaatat catattaaaa
    33481 atactgtttt agtagataaa atagattctt taatgaaaga tatcatcaat ataagcaaaa
    33541 aataaattaa ggaagagaaa tgaagcatta tgaagttatt attattggct ttggtaaggg
    33601 tggaaaaact ttagcggcaa aacttgcaat gctaggaaaa aaagttgctc ttatagaaga
    33661 agatgaaaat atgtacggag ggacttgcat taatgttggt tgtattcctt ctaagtcttt
    33721 ggtaaaaaac tctctttgtg ctgataaaaa tgcaaattgg gaaataaaac agaattttta
    33781 ttacaatgct attttagaag aaaaacaatt aagtgcaatg ttaagacaaa aaaattatga
    33841 taagttaaat gctttagaaa atattactct atatcttgga aaagcttctt ttattaatga
    33901 aaaaactttg ttaatacagg gcgaaaaaga agttcaaatt agtgccgata gaatttatat
    33961 taatacaggc tcgattccta ttataccaga tataaaagga ctagatcaaa gtaaaaatgt
    34021 attaacaagc aaagaattaa tggcacaaga aaatttacct aagcatcttg ttatcatagg
    34081 tggaggttat attgctttag aatttgcttg tatttatgct aattttggtt ctaaggtaac
    34141 cttattgcaa aggaacgata cttttttagg taaagaagat aaagatttcg cagatttaat
    34201 ttttcaaaat ttagaaaata aacagattga tattagatta ggagttcaat ttaaagaaat
    34261 taaagatttt gatcaaaaaa gtatagtgtt ttttactcaa gatcaccaag atttcgaaat
    34321 tgaatgtgat atgatcttat tagcaacggg aagaaaggca aatactcttg gattaagttg
    34381 cgataaagcc ggcattcaac tcgataaaag aggttttatt attgttgatg atactttaaa
    34441 aacaaataaa gattctattt atgctctagg tgatgtaaat ggaggtttac aatttactta
    34501 tgtttcttta gatgattata gaatagctta tgctccattt aggcaacaaa attatacaaa
    34561 atctaaaaga aaggttattc cttatagtgt ctttatcgat cctccttttt caagagttgg
    34621 attaaatgaa aaagaatcaa ttgatgcagg ttatagaatt aaagtggtaa aattgcctgt
    34681 tgtagcaatc cctaaggcac aagttcttaa aaaaacttat ggtttactaa aagcaatcat
    34741 aaatgaagaa aatgacgaaa ttttaggagc aatgcttttt tgtgaagaat ctcatgagat
    34801 gattaatatt gttaaacttg ctatggatac taatttaaaa tatcaagttt taagagatca
    34861 aatttatact cacccaacaa tgagtgagtc ttttaatgat ttatttgata tctaaataaa
    34921 ttttttagat tttgcctaat accttcaagc atagtgaaac gttttttata catggagcgt
    34981 ttttgcgaag ggatttcttc taggtttttt tgcgagtggt ggagcttgta gtatttgtgt
    35041 ttatcgattt ttattaattc tccaccattt tctagccaaa ttttttgata atctacaaaa
    35101 tagccttttt cttttccttt ttgagaacgg atttgatttt tttcatgtac acctaaagta
    35161 gcttgaagtt ttaaaatttc acaaagcatc ttagagcatt ctataagtaa agcaacaggg
    35221 cgcaaaccat gacatttttt agttaaaatt ttattaattt ctaaaatatt aaaatctttg
    35281 tatttatatc cttgtatgca agaaagtaga agattatttt ctaaagtaaa gcaaaaatta
    35341 cattgtgaaa tagtgtattt tttaaatttt aaagaaaaag cccaaaaacc ttcttcgtaa
    35401 acattatggt tatatcctaa aaaaagctca aaatcttcat caaaagaaaa aatcatttgt
    35461 tcttcgggaa gaaatttaaa acaagtaagt cccttatcaa catcataaat aagtgtttta
    35521 acgcgttcat ttgctttaaa acttttatcg caaaatcttc ttatagcatt gtagcaagca
    35581 tagggtcttt gagagaaaaa gtcttttaaa tgtttatttt tttcttcatt aagcgttttt
    35641 tctagaagcc ttacttgagg aaaatataga atttttcttg cttgaaaacg caaatagcgc
    35701 caaaagatga tactttttct tctatcagta aaatttggaa tagggtagga aaatttttta
    35761 ttcacctgca atccttgata tatcattata agttgcaaag agcattaagc ttaaaagtat
    35821 tgccatgcct gcgtaactta agtattcaaa agcacgctgt ggaatcttgc gtctaaaaat
    35881 catttcataa agattaaaaa gtatatgtcc tccatcaagc ataggaatag gtaaaagatt
    35941 taaaatacct aaatttatag aaattaaagc agtgataaat aaaagcaaag taaagctatt
    36001 ttgtgcagcc tttgaggtaa tttcagtcat ggtgataata ccgcctaaat tttttgcttc
    36061 aacttcacca cttatgagtt ttacaatacc cttgatgata agtgtggaag cttgaaaact
    36121 ttcttgtgcg gcatatttaa aactttctaa accttggtgt tttacaagag tgcttgtccc
    36181 atttggactg actccaagtt gaggtttttc aacgatttgt ccaaagtcat tatatccttg
    36241 tcctattttt ggagttaaaa taaattctaa attttttcct tctctatcga ttaatatttt
    36301 caaaggctct aaacttaaat gctttgaaat ttcatcaaag ctttgaattc ttataccgtt
    36361 aatttctaag atagtatcat ttttttgaag tcctatgtct tgtgcagcag agtttggcgc
    36421 tatgcttcct atttgcggag caagtttgtt tagacctaaa tttcctatga taatataaag
    36481 aaaaaaagct aaaattagat taaaaaatgg tccagcaaaa agaatataaa tcttttttaa
    36541 aggacttaaa atgctatagc tatctttgtc tagattttca aaaccaggac gcatatcatc
    36601 ttgtccttta agtttaacat atcctccaag tggtaaagtg cttaagcgat agtttgtgcc
    36661 tttaaattca cgctctataa gactttttcc aaatcctata ctaaaaactt caacttttac
    36721 acccaaagat cttgcagcca aaaaatgtcc taattcgtga aagaaaatta aaaatgagat
    36781 gactaaaaca gttgctaaaa attcaataga ataaaattta attcccaaaa tcaaaataac
    36841 aattaaaaat aataaagatc tcatttttct cctttttttt gagcttttat ataagtatag
    36901 atgtattcaa atccagaata aagagttaaa atcaaagcta tgtaaagtag aatttcaccg
    36961 cctatccact ccatgattaa aaatcctatc gcagtcattt gaaaagcggt tttaagtttg
    37021 cctgcaaaag aagcattgac atttaaattt tcgctaatca ttacaactct aaaacctgtg
    37081 ataaaaaatt cccttactaa tataatataa attacccatt cattagcttt tcctgtaagt
    37141 aaaagcccta aaaaagctgc taaaacaagc attttatcgg ctaatggatc taagattcca
    37201 ccaagttttg tagtttgttt ccaagttctt gcgatgtatc catcaaaaaa atcacttaaa
    37261 gctgctaatg aaaaagttaa agcagcaaaa tagttaatcc aactttgatg aatattttca
    37321 aaatgatgaa ttaataaaaa aaatagcaaa ggcgctaaaa ccattctaaa aatcgccaag
    37381 atattgggta aattcataac aagccttgtg aaattaaatg taaaattata atcaaaattg
    37441 tataaaattt aagcaaagac ttagtaaaaa tacaaaaaag aatcagttta tttttattta
    37501 aattttgctt aaaagcaaaa tttaaataaa ttttacaact tcatcaaaac taaaacgatt
    37561 tttttgagga ttttttttat cgttgcaata tcctaaagcc accaccaaac ttgatctttc
    37621 tttttgaata tcaagtgata aataagaatc aagcttttct ttatcaaaac cacctatagt
    37681 gcagcttgct atatttaaag cattagcact gtaaagtatg ctagctagag ctatatgagc
    37741 ttgttctctt gcataagata ttttttgttc ttgatttaga gattttaaaa aaggcatata
    37801 agtatctaag cgtttttgca tttctgtttc actcatatct ctttttctaa gtttttcttc
    37861 aaaataatcc aaaaaatcaa gtcttgaaat gattataatt aatgcagcac aatcttttac
    37921 atgtttttgt tgattgcaaa ttttagaaag ttcttctttt cttttctcat cttgcactac
    37981 tataaatttc caaggttcca gtcccaagga gcttgggctt aatcttgcta tttctaaaat
    38041 agaatttaaa tcctcttttt tgagtttttc atttttaaaa tttctacaag aatatcttgt
    38101 gctaaaaatt tcaagttctt ttttcattat ttttccttgt aaaattcgac gacttcatta
    38161 aaatttaagc gttgagtaga atattttggt tcatgggctt tatatcctaa ggataaaatt
    38221 acagcagttt caaaaggata agttaaatta agaaaattat caactttagc tttttcaaag
    38281 ccacctatca tacaagaatc aatacctaag ctcattgcag ctagcgacat ttgcatcata
    38341 gcaagatagc attgaagttg tgcgtaatga tagagttcat tatcattcat tgcattggtt
    38401 ttatgggtgt aaatttctaa aattttttga aaattttctt cgctagaacc tgagaaacga
    38461 cgcacttgtt tttgtgcaaa ttcatctttg ctttgaagat cttttcttgc tagaaaaatg
    38521 atattatgac tcgcacttgc tacattttgt tgattgtaac atagggttga gagtttaaga
    38581 ttgtgttctt tttgttctaa tactacaaat ttccaaggct caaatccatg tgagcttggg
    38641 gctaagactc cactttctaa gataaaatgc aaatcctttt cattgatttt tttatcatta
    38701 aaaagtttac aagctctgcg ttttgaaatt agttctttaa aattcatttt attccttaaa
    38761 atcaaaaata ataatattaa ttataaaatg caaagcttaa tcaaaaaata ttatagtttg
    38821 atatttttct taaaaacaaa accggatttt tcaaaaccca ttttttggat ataaaattca
    38881 tgagcttgtg ttctaaaaaa acttgaactt agttctaatt cttcatatcc ttgatctttt
    38941 gcccaaattt ggattttttt caaaaaagct tgacctatac cttttcctct taaagcttca
    39001 tctacgacaa aatcacaaat ataaagacaa tgattatgat aaagtacatt aaagggcatg
    39061 actccacaag ctgctttgta gcttccctca ttttcatagg caaaaagttt ataatgttga
    39121 gtttgtgtag caagttggat tttgtctaaa aaatctttca aagataggtt atttcttaat
    39181 tgttttatca agggataaat tttttccaag tcttctttta gcttaatttc tttcattttt
    39241 aaatccctta aatttcaaaa atctcaggtt ttaattttaa aagtaggcaa aaagttgcca
    39301 aaacagcttg ttcttgcata aattcacgat ctccatctaa ataaagcgtt tcttggataa
    39361 aagttccatc tctaaacatt gcacctatat aaatagtgcc tgattttatt tttccctcat
    39421 ctttttcgcc aactactccg ctaatagcta aggcaaaatc aggattagct gttttaaaaa
    39481 taccttttag cataaaataa acacaacgtt cactgtattc gccattattt tctaagatgc
    39541 tttcgctaat tccaagccat tcgtgtttga tgcggttgga ataacttaca atagatcctt
    39601 caaaaatttc acttacacct gaaattttgg ttaaggtgct tgcacaaagt ccgcctgtgc
    39661 aactttcagc aaaagaaatt tttaattttt tttctaaaag tttagagctt ataaaatgta
    39721 taggatcttt acctaaaaac accttttgtc caaaaagatt ttttacgcta tttaaaaaac
    39781 catcaagttt tccaaaatta gcgcaagtgg ccttaataag cacaagatta tctaaaagct
    39841 tggttaattt tatatttatc tcataagatt ttgttagggt ttgcagtagt aatatagcgc
    39901 tttcatcatc catgccaaaa atgcaaaaat atgcaaaatt taattttata tgcccaagaa
    39961 gattgggtaa tttttcgctt ggatttattt taacgacatt gatttttgaa tttgaaaaat
    40021 tacacacaaa gctattttta ctaaattctg ctttatctgg aaccaaggta tcatctttta
    40081 agataagatt atcatcattt aaagttgcta aaattttagc aacagtcgca taatgcaaag
    40141 ggcttgtaaa taaagtgata aaatcatact gatttaagag gttttcaagc aaaaagggta
    40201 aatctttatc ggttttactt tgtatgcgaa tttcgttgat ttctttaaat ttttcttcat
    40261 aagttctata aatataattt ttgaattttt cgtttatagt aagctcatct cctataagat
    40321 aaagcaaatg tttcataaat tttccttttt ttcttataat tatagccaaa aacaaagtag
    40381 aaattaaagc taatttgagt agaatttaag attattaaaa attaggtgga aaaaatggac
    40441 tacaaagaaa ctctactttt gcccagcact acttttgcta tgcgggcgaa tttagcggaa
    40501 cttgaaccgc aaagatttaa aaaatggttt gagcaaaatt atgcttatga aacaatgaaa
    40561 gaaaatcgca aaaatgcgaa aaaaagtttt actttacacg atggcccccc ttatgctaac
    40621 ggacatatcc atataggaca tgctttaaat aaaattttaa aagaaactat tatcaaaaca
    40681 cattatttta aaggtgagag tgtgcgtttt actccagggt gggattgtca cggtttgcct
    40741 atagaacaac aagtagaagt aaagcttgga gaaaagaaaa aaagcttaag taaaaaagaa
    40801 attcgtgagt tttgcagaca acatgcgagt gaatttgtag atatccaaag agaagaattt
    40861 aaaaatttag gcattattgc ggattgggat aagccttatt taactatgaa atttgagttt
    40921 gaagcagcga tttatagaac tttatgtgag attgctaaga aaggcttact ttgtgagcgt
    40981 tctaaacctg ttttttggag ttgggcggca aagtcagctt tagcagaagc tgaggtagaa
    41041 tatcaagata aagaagatta ttctatcttt gtggcttttg atttggatgt aaaagcttgc
    41101 gaaaaattag gtgtttcaaa agcaagcgca gtgatatgga caactacgcc ttggacttta
    41161 gtggctaatc aagctatagc tttaaatcct aatgaaaatt atgtgatcac caaagaaggt
    41221 ttgatttttg caagtgcttt acttaaaagt atggtagaaa aaggacttac aagtggagaa
    41281 attcaaaaag aattaaacgc aaaagaattt gaaaaacttg aagctatcaa tcctttaaat
    41341 ggaagaaaat ctgttttaat tatgggtgag catgtattga tggatggtgg aagtggactt
    41401 gtgcatactg caccaggaca tggcgaagat gattactatg cttgtttgaa atacggtatt
    41461 gaagttttaa tgcctgttga tgatggtgga tgttatgatg aaactttaag agctaaagag
    41521 cttttgcctt ctcatttgct tgaagagttt ataggtcttc atatttttaa ggctaatgaa
    41581 aaaattttag aacttttagg cgcaaaactg ttacattctt ctaaatttat acactcttat
    41641 ccgttttgct ggagaacaca taaacctgta atctatagag ctactaaaca atggtttatt
    41701 ttaatggatg agccaaaact tcaaggaaaa accttaagag agtgtgcaaa agaacaactt
    41761 ttaaaaacaa ctttttatcc gcaaagtggg gtaaaaagaa taggttctat ggtggaaaat
    41821 cgcccagatt ggtgtatttc aagacaaagg gactggggaa cgcctatagc cttttttaga
    41881 gataaaaaca ctaaagaagt catttttgat gatgagcttt ttgactttgt agcggctatt
    41941 tttgaaaaac acggcgctga tgcgtggtgg gagtttgaaa tcaaagattt aattcctaca
    42001 aattcaaaat acaacgctga aaatttagaa aaagtatatg atattttaga tgtttggttt
    42061 gatagtggaa gtacttttaa tgcggtttta aatagcggac tttatgacgc aggagaaaaa
    42121 agagcaagta tgtatttaga aggaagcgat caacatcggg gttggtttca aagctctttg
    42181 cttgtaggta cagcgatcaa tgaaagtgca ccttatgaaa gcattttaac tcatggtttt
    42241 accaccgatg aaaaagggca aaaaatgtct aaatctaaag gcaacgtgat cgctcctgaa
    42301 tatgtagcaa aaacctatgg agttgaaatt ttaagacttt ggatactttt aagtgattat
    42361 tcaagtgatt taaaaatttc agacaatatc ttaaaacaag taggcgaaca ataccgcaaa
    42421 ataagaaaca ctataagatt tttacttgcc aataccaatg atttaaaaga tttaaaagtt
    42481 aaagaattta gttttattga taaatggata ttaagccgtg caactaaagt ttttaaagca
    42541 agcaaagagg cattttttgc ttatgaattt gctaaaggtt ttagtttgct tttaaatttc
    42601 ttaagtgcgg atttaagtgg gatttatctt gatatcagta aagatagact ttattgtgat
    42661 agcgaaaatg cccaaagaag aaaatctgct caagtggcta tggctttgat agcaaaagag
    42721 cttttaaatt tacttgctcc aaatttaagc tatagtgtag atgaggcttt agaacatgct
    42781 aatgttttaa tcaaaggcga tgcaaaagat gtatttgatc taagtttaac tcaggatttt
    42841 gattatgatt ttggtataga tgatacattt ttaatgagtg ctagagagaa attttttgaa
    42901 cagattgata tacttaaaaa agataaaatc attaaatcta ctttggaatt aaatttaaac
    42961 atcagtttta ataaattccc aaatgaggaa ttagccgatt ggtttatggt aagtcaaatc
    43021 agcaatgaaa atgaagaaat tttggctgaa tttgaagtag agaatgagaa atttaaaatc
    43081 accaaagctt cactttgtaa atgcccaaga tgttggaaac ttcaaagtaa agatgaagaa
    43141 acaccttgtt taagatgtga agaagtttta aaagggattc aatgctagaa aatcctattc
    43201 caaatagcat tatcatcaca actatagcgg tggttttggc ttttagtgct ttagcggtat
    43261 ttttgatcaa aaaaacaaag gaaaataaat gataacttta aaagaagctt taaaatactc
    43321 caaagaagaa cttgaaaatt taaaaaaaga actcaatgaa aaagcaaaaa aagaaaaaaa
    43381 aataggtgct tatatcgaac aatttttaga taaagactta agtgtttcag gtgaaggtgt
    43441 gcctgtagct ataaaagata atatcagcgt aaagggctgg gagcttacta gtgcgagtaa
    43501 gattttacaa ggttatatcg ctccttatga tgcaagtgtg attgttaatt taaaagctaa
    43561 tggtttttct ccttttgggc gttgcaatat ggatgaattt gctatgggaa gttcaacagc
    43621 gagttcttat tatggcaaaa ctttaaatcc tttaaatttt gagcgtgtgc caggtggttc
    43681 aagtggtgga agtgctgctg cggtagcggg tggcttggct ttggcaagtt tgggttctga
    43741 tacaggagga tctgtacgtc agcctgcagc tttttgtggt tgcgtaggat ttaaaccgag
    43801 ttatggaaga gtgagtcgct atggcttagc ttcttattct tcaagtttgg atcaaattgg
    43861 ggttttaacg caaaatgtag aagatgcggc aattttatat gatgcgatcg caggatatga
    43921 taaaatggat agcacgagtg caaatatcga gtttatcaaa accgctccaa atttaaatgc
    43981 aaataaaaaa ttaaaaattg cagtgattga aaattatgtc aatgatgcag atagtgaagt
    44041 aaaaaacgca cttttaaaaa ccatagatat gttaaaagct aatggacatg agattgtata
    44101 taaaaatttg cttgattcta agtttgatat cgcagcgtat tatatcatcg caacagctga
    44161 agcaagtgca aatttaagtc gttatgatgg agtgcgttat ggcaagcgtt ctgaaaatat
    44221 ccaaaattta aaagaaatgt atgtaaatac acgcagcgaa ggttttggcg aagaagtaaa
    44281 aagaagaatt ttgttaggaa cttttgtttt aagcagtgga tattatgatg cgtattatat
    44341 caaagcacaa aaagctagag cttttatcaa ggcaaaatat gaagaaattt tgcaagattg
    44401 tgatcttatt tttatgcctg taacgcctac gacagctttt aaatttgata cccaaaaaag
    44461 ccctatgcaa acttatttag aagatgttta tactatctct gtaaatttag cagggcttgg
    44521 aggcattagt gtgcctgttg caaaagataa agaagggctt aatatatcag cacaactgat
    44581 ttgcaaagct tatgatgaac aaaccttgtt agatggggct ttaagtttag aacaaatgat
    44641 taaaaattaa ggatgaaaga tgaaaattgt aaaaagagct ttaacttttg aagatgtatt
    44701 attgcgtcct gggtattctg aagttctacc taaggaagta aaaattcata ctaaactgac
    44761 aaaaaatatc actttaaata tgcctttaat ctctgcggct atggatacag ttactgaaca
    44821 cagggctgct attatgatgg caagacttgg aggacttgga gtgattcata aaaatatgga
    44881 tatagcctcg caggttagag aagtaaaaag agtgaaaaaa agtgaaagcg gggtgattat
    44941 cgatcctatt tttgtaagtc ctaaagcaag tgttgcagag gctttagaaa tcatggcaga
    45001 gtatagaatt tcaggtgttc ctgtagtaga tgaagataag aaactaatag gcatacttac
    45061 caatcgtgat ttaagatttg agagcgattt ttcaaatttg gttgaaaatg ttatgactaa
    45121 aatgccttta atcactgctc caaagggttg tactttagat gatgcggaaa aaattttcag
    45181 taccaacaaa gtagaaaaac ttcctatagt tgatgaacaa ggacgcttgg aaggacttat
    45241 cactataaaa gatcttaaaa aacgcaaaga atatcctgat gccaataaag ataattttgg
    45301 aagattacgc gtgggtgcgg ctataggagt aggacaaatg gatcgtgtgg atgctttagt
    45361 tgaagcgggt gttgatgttg ttgtgcttga ttctgcgcat ggacattcta agggtattat
    45421 tgatacagta aaagcgatta aagctaaata tccaaattta gatcttatcg caggaaatat
    45481 cgccactgca gctgcagcaa aagcactttg tgaagcagga gtagatgcgg ttaaagtagg
    45541 tattgggcca ggaagtattt gtaccacacg tattgtttca ggtgtgggtg tgcctcaaat
    45601 ttcagccatt gatgagtgtg tggaagaagc aaataaattt ggcgttcctg tgatagctga
    45661 tggtggaatt aaatattcag gtgatattgc aaaagcttta gccgtaggtg cgagttctgt
    45721 tatgatagga tcgcttttag ctggaacaga tgagagtcca ggagagcttt ttacttatca
    45781 aggaagacaa tataagtctt atcgtggtat gggttcgctt ggggctatgc aaaagggaag
    45841 ttcagacaga tactttcagc aaggtactgc tcaagataaa cttgttcctg aaggtataga
    45901 agggcgcgtt ccttatgtag gaagtataag aagcgtggtg catcaacttt taggaggttt
    45961 gcgttcttct atgggttatg ttggagctaa agatatagaa gattttcaaa aaagggctga
    46021 atttgttgaa attactaccg cagggcttaa agaaagtcat gtacatgatg ttactatcac
    46081 tcatgaagca ccaaattaca aggtcaatca tcaatgagtt ttgaagaaaa tttaaaacac
    46141 gctaatgaat ctttggaaaa attaaacaat caagagcttg ccttagatga aagtgtaaaa
    46201 atttacaaag agggtttaga aagtatcaaa aaagcaagac ttgagcttga aaaagcaaaa
    46261 ttagaagtgg agcaaatcga tgagtaaaat agcggcttta cagtttccaa ctttagcttt
    46321 aagtgaatca aggcttgatt attatctcaa agcttcaaaa gacaatgggg caaatttagt
    46381 agttttgggc gaatatgtga tcaacagttt ttttacagaa cttttgcata tgccaaaaaa
    46441 tatgataaaa gaacaaagtg aagctaaaaa agaaagcttg attaaacttg ctaaaaaata
    46501 cgaattagaa atcatcgctc cttatgtaag cgttgaagct aaaagttata aaaaactttg
    46561 cttaaaagtg actccaaatg gtgttaaaag ttatgaacag caaattttaa tgccttatga
    46621 acattggaat gaagaaaaat ttttcagcaa caaaactcca tcagaattaa aaatttttac
    46681 ttttaattat gaaaaattaa aatgtgcttt actttttggt tttgagacgc attttgatat
    46741 tttttggcaa cagattatgg cgaaaaaaat tgatttggtt atcgttccta gtgcttgtac
    46801 ctttgaaagt aaacaaagat gggaagaact tttaaaaaca agagcttttt taaattctac
    46861 aagcatttta agagtaaatc gcataggcaa aacaaaagat gagtggaatt tttacggcga
    46921 tactctgttt atcaatgctt ttggcgagat agaaagtaaa ttaggttctg aagaagaaat
    46981 gcttattata gagcctaaaa aaagtgatga agcaagaaaa ctttggggtt ttgataaaat
    47041 tcttaagaat ttttaaagaa ggtaaatatg agaaaaattt tacttcaaat ttttattttt
    47101 agtgtattat ttatagtaac ttttgccatt aatcgtattt taatgcaaaa ttctttcatc
    47161 cctacaggtt taattagtga taaaaatgaa atctttttaa tgtatctttt gggtgttttt
    47221 catgatataa gatttttaag cgcagcgttt ttaccattct tgctttgtgg ttttttaagt
    47281 ttaatttttt ctaatataaa aata
//
LOCUS       DAZBIH010000002        44250 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.002, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000002 DAZBIH010000000
VERSION     DAZBIH010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 44250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 44250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..44250
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.002"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1110
                     /gene="dnaJ"
                     /locus_tag="ACHFOB_000050"
     CDS             <1..1110
                     /gene="dnaJ"
                     /locus_tag="ACHFOB_000050"
                     /EC_number="1.8.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA];
                     GO_process: GO:0009408 - response to heat [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HFN5798900.1"
                     /translation="YELLEITQNADKETIKKAYRKMALKYHPDRNQGDKEAEDKFKLV
                     NEAYEVLSNDEKRAIYDRYGKDALKGGGFGSNSSGFGGFEDLGDIFSSFFGEGFGSSS
                     RRRKSSNDEKIPSDFIFNLKLSFKEAVFGCKKNIDFTYKCSCKTCNGTGAKDGKLQTC
                     PKCQGRGQVGVSQGFITFAQTCPDCQGSGEKASEKCSDCKGLGYNESKDSVELNIPEG
                     VDTGMKLRVNAKGNILKNGTRGDMYVKIIAAEDDTFIRDDDDIYIEFPVFFTQAILGE
                     SIKVPTIRGEATLNLPKGAKDGQRFVLEKEGVKDVHSSRMGNQIVQISIKFPTSLNDE
                     QKELLEKLSESFGIKDGMHQEQKGLFEKITNWFKS"
     gene            complement(1225..2499)
                     /gene="porA"
                     /locus_tag="ACHFOB_000051"
     CDS             complement(1225..2499)
                     /gene="porA"
                     /locus_tag="ACHFOB_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="group 1 major outer membrane porin protein PorA"
                     /protein_id="HFN5798901.1"
                     /translation="MKLVKLSLVAALAAGAFSAANATPLEEAIKDVDVSGVLRYRYDT
                     GNFDKNFVNNSNLNNSKQDHKYRAQVNFSAAIADNFKAFVQFDYNAADGGYGANGIKN
                     DQKGLFVRQLYLTYTNEDVATSVIAGKQQLNTIWTDNGVDGLVGTGIKVVNNSIDGLT
                     LAAFAVDSFMAEEQGADLLGQSTISTTQNAVPFQADSLGNLYGAAAVGSYDLAGGQFN
                     PQLWLAYWDQVAFFYAVDAAYSTTIFDGINWTLEGAYLGNSLDSELDDKRHANGNLFA
                     LKGSIEVNGWDASLGGLYYGDKEKASTVVIEDQGNLGSLLAGEEIFYTTGSRLNGDTG
                     RNIFGYVTGGYTFNETVRVGADFVYGGTKTEATNHLGGGKKLEAVARVDYKYSPKLNF
                     SAFYSYVNLDQGVNTNESADHSTVRLQALYKF"
     gene            complement(2751..3206)
                     /locus_tag="ACHFOB_000052"
     CDS             complement(2751..3206)
                     /locus_tag="ACHFOB_000052"
                     /EC_number="3.1.3.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004725 - protein tyrosine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006470 - protein dephosphorylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight
                     protein-tyrosine-phosphatase"
                     /protein_id="HFN5798902.1"
                     /translation="MKKILFICLGNICRSPMAEFIMKDLVKKANLEKEFFINSAGTSG
                     EHDGEGMHYGTKNKLVQLNIEHKNFTSKKLTQKLCDESDFLITMDNSNFKNVLKNFTN
                     TQNKVLKITDFSPSLNYDEVPDPWYSGNFDETYKILSLACKNLLVFLSK"
     gene            3260..4444
                     /locus_tag="ACHFOB_000053"
     CDS             3260..4444
                     /locus_tag="ACHFOB_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5798903.1"
                     /translation="MENFNRTLLVCWFGVFTTSMGLSQIAPILPFYIKELGHVDTSEI
                     AFYSGLAFGITPLFMAVFSPLWAFLGAKYGYKNMLLRASFGMSVLTLWLSFAHSALEV
                     VFVRGLTGIISGFTSAAVVFIAVIAPKEKVAYALGTLSTASISGSLLGPLFGGFVAEF
                     FSISAVFDVVAFLIACSFVTIYFFIHGRKIQKEAKKNTQKVKENKTLIIVLFITTFVI
                     QFGTFGVMPILSIYVEQIHQGGNLALWAGIVVAANGISNLFFAPKLGKIADKIGPSKI
                     IFGALIFCGICFYLQAVASNVYTLIFVRLLIGVGLGGLLPCVNALLKKSVSAKNLSVI
                     FGFNQTCQFLGNFCGAFGGGLMASHFSVEFVFTFVCLIFIINAFIFLAFEKKYIFSNQ
                     GL"
     gene            4462..5124
                     /locus_tag="ACHFOB_000054"
     CDS             4462..5124
                     /locus_tag="ACHFOB_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4230 domain-containing protein"
                     /protein_id="HFN5798904.1"
                     /translation="MEMILFVLVMILLVLLFVVLFRQYKSPKIEEKSTQSFSDIMQLK
                     SIGELSVFQVFSKEIVTKKDSAFNGIWKNLLGWSLSERQIALIFEFEITFLYDLRDKN
                     FDILPLGDDAYKIIMPECRYKHSIIDMKFYDEKNAKFLPFLLPDSINSTGISFSESDK
                     NKLIKEAKDEVKDLSLNLIQNLESKIHKSAKDTLEAIAKGFGAKRVEFEFKDNTQKLD
                     VS"
     gene            complement(5121..5330)
                     /locus_tag="ACHFOB_000055"
     CDS             complement(5121..5330)
                     /locus_tag="ACHFOB_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxymuconate tautomerase family protein"
                     /protein_id="HFN5798905.1"
                     /translation="MPFVNIRITKENGEPTTEQKQELIAGVTDLLAKVLNKNKSSTVV
                     IIDEIDTDNYGLGGKSITQARKEKS"
     gene            complement(5388..5870)
                     /locus_tag="ACHFOB_000056"
     CDS             complement(5388..5870)
                     /locus_tag="ACHFOB_000056"
                     /EC_number="3.2.2.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033958 - DNA-deoxyinosine glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006285 - base-excision repair, AP site
                     formation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-deoxyinosine glycosylase"
                     /protein_id="HFN5798906.1"
                     /translation="MSEFLTHPFEPFFDKDSKILILGSFPSIKSRQDGFYYQHPRNRF
                     WPILETLFDVKLENIAEQQAFLRKKHIALWDVLQSCKIKNSDDKTISYAKANDLNLIL
                     SQTKIQAIFTTGQSAYRFFVKFHPRLEAIALPSTSPANLNFSFEQLLQNYEIIKKFTK
                     "
     gene            complement(5867..8026)
                     /gene="pnp"
                     /locus_tag="ACHFOB_000057"
     CDS             complement(5867..8026)
                     /gene="pnp"
                     /locus_tag="ACHFOB_000057"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004654 - polyribonucleotide
                     nucleotidyltransferase activity [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HFN5798907.1"
                     /translation="MQYSIEINKNTEIFDIDKVAKQAAGAVLMRQGKSIVLATVAREE
                     KQVEEDFLPLTVQYIEKAYAAGKIPGGYVKRETKPSDAETLTARIIDRSLRPLFPKGY
                     AYPTQIVVMVLSADPKVDLQVMSLNAASVALYLSDIPMKAPVCGVRIGKIDGNFILNP
                     NNEELQNSTLDLYVAGVKDELLMIEMRALPDQKENEIFIEAPYADVLTQTTSQNMNEL
                     SEDEILEALNLAQKAILNGSNAYEEAFSKHKKNSQIELKNEIEHPEILAFIENNFQKQ
                     IKEAINQMAKSERASELNKIAKEILNLEITKDWSEESVLNTLAKVKRKLIREQILNEG
                     KRADGRSLNEVRPISIETNILPNAHGSCLFTRGQTQALVVATLGGENDAQMIDLLTEK
                     NPISERFMVNYNFPGFSVGEASPIKAPGRRELGHGNLAKRALYPSVDENYPYIIRLVS
                     EILESNGSSSMATVCGGSLALKAAGVPSLKLVAGVAMGLIFEDNKHAVLTDIMGLEDH
                     DGDMDFKVAGSKDGVTALQMDIKLGGIDQETLKQALYQAKEGRIHILNIMEEAAKEII
                     VNEEVLPKLELFSVDPSKIVDIIGQAGKTIKEIIEKFGVSIDLDREKGEVKIAGSQNE
                     QIKAAKDYIINITSSQKGTKKGSKDKDISGFELGQEFQGIVKKIAPFGAFVELKNGVD
                     GLLHSSKSKHLNLSENQSLKVKISEIKNGKISVDLCE"
     gene            complement(8096..10144)
                     /locus_tag="ACHFOB_000058"
     CDS             complement(8096..10144)
                     /locus_tag="ACHFOB_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPS-assembly protein LptD"
                     /protein_id="HFN5798908.1"
                     /translation="MWRKFSLLLGTSIALNAAQVDIYALDAKKEGDILTANNDVVIFS
                     DFYFITANKAIYNEKTEDVELFGDVNILRGQNERSHSDYAKINLNSNQADFSNFFFSN
                     NNLEVWFQSKTSHLNDKVFESKISAVSSCNVEDPDWEIRFSKGWLNRETNFVHLYNAR
                     LYVKNTPVFYLPYFGFSADTHRQSGLLIPKIVLKSSEGLYYEQPIYIATQENWDLELD
                     PQIRTNRGFGLYSTLRFLDSPYSTGELNFGAFRENSSYFHDENLKNQTHYGIELKYSR
                     DDLIKSLLSDNFQEGLWIDATYLNDVDYLNLGSRDYRDLNSLVTSKINYFLADENNFY
                     GAYARYYIDTSKLSNNTTLQEYPSFQYHRFLNNLFDERLRYSFDASFHNFYRPAGSYA
                     NELNLDLPISYHNAFFGDFLHFTFTERFYASFVNYSNDPERNHEHYFRNTHDFNLYTD
                     LSKAYENFFHTLNLGVNYILPGAKSGKITQDYLEEYDKENEHTSLYAVQYFYNNEGQK
                     KLKHRISLDYLNKQNEFYELENLLTYYFNENINLNSEVLYSYEQSRFTNVISQIEVNT
                     NSKFNWMFSHAYQNDEYGKYSFIGTRANYIATPNYNLFGGIWFDTQRAHTNMWELGYT
                     YQRKCWNYSLMYRERIDPQLTSGGITAKNQSGIYFIFNFYPLGGVKYDFSLAESENKI
                     "
     gene            complement(10134..10586)
                     /locus_tag="ACHFOB_000059"
     CDS             complement(10134..10586)
                     /locus_tag="ACHFOB_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFN5798909.1"
                     /translation="MKENLQDRLERENLKIASFGKRVLAFLIDDMVISLIVFIIFYDR
                     LIQAKDLFETTQIIGNFYLGFILLHFSYQAIFTYLYGASLGKILCKIIILDENLLDKP
                     NLIQSCIRSAIRQVSAMAFMLGFAWALSNDLRKAWEDYLARTIVVDVA"
     gene            complement(10583..11833)
                     /gene="purD"
                     /locus_tag="ACHFOB_000060"
     CDS             complement(10583..11833)
                     /gene="purD"
                     /locus_tag="ACHFOB_000060"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HFN5798910.1"
                     /translation="MKIMILGSGAREYSIALALRRVDKNLEFYFAPGNGATESLGTNL
                     NLKDPVVLATYAKEKGFDLCIVGSESFLAEGVVDIFKQQGLAIFGPSKAAAMLETSKS
                     FMKSFLKKYRIKTAKFLNTNDIEKAKNFIYSLTPPIVVKADGLCAGKGVIIAKTHEEA
                     IKETAKMLSGESFGDAGKLVVIEEFLDGYELSIFAVCDGNDFVLLPAAQDHKKLLDND
                     QGPNTGGMGAYAPSSLANESLLRKVQKDIILPTLAGMKKEGAEFCGVLFIGAMIVGNK
                     PYVLEFNVRFGDPECEVLMPLIEDPLELILAATQRRLRHAKIKIKKEFAVGVVCASEN
                     YPYKSSPKSEITVNNIPENSHISYAGVSLEDGKLMADGGRVLVCVGTGKSIEEAQKNA
                     YKLCDNVNFKGKQYRKDIAHQVLK"
     gene            complement(12073..13533)
                     /locus_tag="ACHFOB_000061"
     CDS             complement(12073..13533)
                     /locus_tag="ACHFOB_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798911.1"
                     /translation="MHGKIAIYMDSTGRGTVTNSANTFFDFNRQIWNDKKSMPSVGML
                     VEFRTLSSEKKAEDGKPVQTSKTITGIKPSKFQEFKEGDFITEHDFWKTDNDDELEDL
                     QNSRRSAYITELYRTTDFDTIEKIPLSFTIPQAIQKYFAHEILSVETLQANLQDEKEI
                     PCILDYLILKRFLFKAYDTLIFMDNSIDQTQFSALKSIMMHLENSYKQMIADQKPNIT
                     KIFNETFLSLQCHYQALVATIDTRKNRLASLEAQMKTLQSEINLKSNAANADPEKLKA
                     RQERLTKLQKEAEYYRTTLKRLDAIREDFYKKNYNIFENAFKLSREKLFKKIVTGLNL
                     CATIMDFKIWHLSLKSSGIKNSYFTMSNIENSFCSLSFAEHYLSRLNKSALNPFDQKL
                     LVYIQKITKEQRKKFLVVTSDLDLLCKLKIENFSQNPYYLVKYAPKKVNYQSLMRDNT
                     FDIVYIDEKHVWENVADIILQGKHFDKSGKTKFKLI"
     gene            complement(13619..15154)
                     /gene="guaA"
                     /locus_tag="ACHFOB_000062"
     CDS             complement(13619..15154)
                     /gene="guaA"
                     /locus_tag="ACHFOB_000062"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HFN5798912.1"
                     /translation="MKKADILVLDFGSQYTQLIARRLREQGVYAEILPFNVSLADIKA
                     KEPKGIILSGGPASVYATDAYFCDKGIFDLGLPVLGICYGMQLMAHHYKATVAPAGHK
                     EYGKANIEIKKDSALFKNLPKKQTVWMSHSDKVENLPDGFEVLATSENSPFCVFGNED
                     KKFFALQFHPEVQHSEFGKNILKNFAKYACNCESVWNMGSFAKTQAEKIREEVGNDKV
                     LCAVSGGVDSSVVAALLASAIKEQVIVVFVDNGLLRSGEKEQVEFMFKNTLGIDLISI
                     DASEIFLSRLANVRDPEQKRKIIGNTFIEVFEEEAKKHKDVKYLAQGTLYTDIIESSV
                     VGASKTIKSHHNVGGLPEKMNLKLIEPLKEIFKDEVRALGLELGLSKEVVYRHPFPGP
                     GLAIRIMGEVNRPSLELLRKVDVILLEELKSTGWYDKTWQAFCVLLNVKSVGVMGDNR
                     TYDNAVCIRVVDASDGMTATFSHLPYEVLENISRRIINEVEGINRVVYDISSKPPATI
                     EWE"
     gene            15293..15787
                     /locus_tag="ACHFOB_000063"
     CDS             15293..15787
                     /locus_tag="ACHFOB_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798913.1"
                     /translation="MGKRNNIKMTKNASAVINELMDKPHYKPLKTLFFCKDFLSSFPL
                     AKQRLIAKIYVKNHILNIITLHPAAYQELNHDDSKIYIKFLIKAYGQKYPLSGFVDIK
                     DIKIFSQKYTYAVNKNKNDENLSKNSYLELSKGEFKNCFKDEKLFKKFEDLRELIKKG
                     SNLD"
     gene            15780..17582
                     /gene="uvrC"
                     /locus_tag="ACHFOB_000064"
     CDS             15780..17582
                     /gene="uvrC"
                     /locus_tag="ACHFOB_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HFN5798914.1"
                     /translation="MTKENLENELKTLPNSAGVYQYFNQEGKLLYVGKAKNLKNRVKS
                     YFAFTPNLHANPRNSLRIQKMIEETVHLEFITTNSEADALILENSFIKQLHPKYNILL
                     RDDKTYPYIYVNFEEEFPRFEITRKLVKKSKIKYFGPFFKGARELLDALYLYYPLKQK
                     ASCKSPCIFYQISRCLAPCDKRISKEKYLEILDEAMHALLNPSILIKNLEKQMLVLAQ
                     NENYEEAAKVRDQIVTIKDLEVKVEMDVAKLEDFEVFALAFEDSMLSTLRFVVQNGKI
                     ISANSKITPIKNDIQWDQNEIYKQLILENFSMDIPLLANVIYVYEEFEDRVLLEEILS
                     QRFDKKISIKIPKIGEKRRICDLAFQNALLNIEKEQKNHDFTIQKELKFYFELENLPN
                     DIEIFDNSHLQGVANVGAMVTYRINSWDKSKYRKFHLKHKNDYDQMREVLTRRALDFD
                     KIPPPDLWLIDGGKVLLDLAKKIIVSSGANVDILAISKEKIDAKAHRAKGGAKDKIHS
                     LKGEFSLSINDKKLQFLQKLRDEAHRFAISFHQNTKKKQDLKSSKLANLGLSSGVIQK
                     LLAYYGNFESIYKADFKDLTMLVGRKAAQKIKEN"
     gene            17584..18780
                     /locus_tag="ACHFOB_000065"
     CDS             17584..18780
                     /locus_tag="ACHFOB_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798915.1"
                     /translation="MILAGIIFIFNLILAYLSIDISKLDSVAEQLKIGMFSSIFVLSL
                     TLFIFAFRQNRNINKIYQKIFYMQNDFLNFQKKIDVDSVLDLLKEKFETTGQNLTKTS
                     HEKDRYLHLLEENLYQLGNISNAMRCLNEGYNKEINSLILNALNSQKDQIRLELNEAL
                     EHHKSIIGTSHGKVLQFEASVAIVNNDELENFLLANLLSYFGIESTCFKNLSFDVNDF
                     HLIFIKDKIFNKNVKKNYDFIVMGRHKNTHYEYFLTLPFEKKDLENILQNKLDKVCTL
                     KFKTPYQNNVLLFKQNDFDATLFFNIIEKQCDKNICINSFSQLKQELSKETYRLILLD
                     YELIKFDLEQMRNLLSAYKKQHPQSHIIFFSKEKVRDFDCVSEVLSDVSRNDLITLLR
                     KYLPKA"
     gene            complement(18777..19679)
                     /locus_tag="ACHFOB_000066"
     CDS             complement(18777..19679)
                     /locus_tag="ACHFOB_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002780201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HFN5798916.1"
                     /translation="MKILFGPVSSRRFGRSLGIDLSPSKKQCNFDCVYCELDPKKAQE
                     KQDEIISIYKIISEVKAMLEKNVEFDFLTLTANGEPSLYPHLNELILSLRSIAKDKKL
                     LILSNGTAVLDEDKFNALLKLDVVKFSLDSAVAKTFYRIDRALKNIDLEKMIEKMADF
                     RARFNGDLIMEILVVKDLNDNEEEFEALNQALKKIMPLRVDLSTIDRPPAYAVKKVSE
                     EKLLELSKLIDSTPVLLAKRHYEGEKLSFNEEELLKMLHLRSQSEIDIEVKFDEQSKT
                     LLNQLIKEKKVKILDLAGVKFYKA"
     gene            complement(19676..20698)
                     /gene="hemE"
                     /locus_tag="ACHFOB_000067"
     CDS             complement(19676..20698)
                     /gene="hemE"
                     /locus_tag="ACHFOB_000067"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004853 - uroporphyrinogen decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HFN5798917.1"
                     /translation="MIFIDACFKKPTPYTPIWMMRQAGRYLPEYMEVRKQAGDFLSLC
                     KDYKKASEVSLQPIDILDVDAAIIFSDILVVPLEMGMNLRFEKGEGPIFDNPISTLED
                     LEKLDDQNAHKKLNYVYDALKLTREKLSQNKALIGFCGSPWTIATYMIEGSGSKNYAK
                     CKKMLYQNPELLHKILNKLTQVLKLYLEEQIKAGANAIQIFDSWASALEYDKFFEFSF
                     NYMLEISNFIKSKYPNIPVILFPKGISGYLDRIDGNFDVFGVDWSTPLDLARDKLSHK
                     YTLQGNMEPCRLYDKNAIKEGVEKILKTMQNKAHIFNLGHGILPDIPVENAKYFIKLV
                     QESSAK"
     gene            complement(20878..21198)
                     /gene="ciaC"
                     /locus_tag="ACHFOB_000068"
     CDS             complement(20878..21198)
                     /gene="ciaC"
                     /locus_tag="ACHFOB_000068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion antigen CiaC"
                     /protein_id="HFN5798918.1"
                     /translation="MVVDNTQKTSNAIFSTTTKVKEKNTSADEFQATLNEVKNKEEKE
                     EEKTSSSKFTNEDIDLGAVREDFRSYAWQKMREDQYKKNEETLLNKLFATIDAGNATN
                     NTKA"
     gene            complement(21254..22453)
                     /locus_tag="ACHFOB_000069"
     CDS             complement(21254..22453)
                     /locus_tag="ACHFOB_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5798919.1"
                     /translation="MQNYKKALFALALSAFCMGVTEFVMAGVLVDVEAYFSVDAKTAG
                     YLTTLYAIGVVIGAPLITIPLSRFHRHTQLLINLGIFALANFIIFFSQNFYLTAFARF
                     VAGTQHGVFFVIATLAVSAIVPNDKKSSALAIMVTGLTVALVTGVPLGTFIGHYFGFK
                     FIFLLIFIITSLAFFGVWHMMPKNLHPSPTSLKNLIPAFSHQNLLKTYTITICSCGAQ
                     FVLYTYLQKLLVEISGFKVQDTAYILLLYGICAICGNLWGGKIVDKKGAIFSLRLILS
                     IQVLVFLSVFLTMHSKILIIFSVALIGFFAFSTIPALKMLSIAKAKRHTYKVIDSTVS
                     VNEAAFNVGIALASFLGGIVLAGLGIEFNALFSALFVSPALIFALLFAKDKLNYKKFQ
                     RKSLKKI"
     gene            22549..23178
                     /locus_tag="ACHFOB_000070"
                     /pseudo
     CDS             22549..23178
                     /locus_tag="ACHFOB_000070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002919757.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(23156..24250)
                     /gene="pdxA"
                     /locus_tag="ACHFOB_000071"
     CDS             complement(23156..24250)
                     /gene="pdxA"
                     /locus_tag="ACHFOB_000071"
                     /EC_number="1.1.1.262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxythreonine-4-phosphate dehydrogenase"
                     /protein_id="HFN5798920.1"
                     /translation="MKKLAISIGDINSIGLEILVRSHEELSKICTPFYFIHESLLNKA
                     LKLLNLKLFNAKIVAFKDDKDYEFNFIKKENSLEIYSFCLPLGFKVDENFEIQAGEID
                     AKSGLYGFLSFKAASYFVYEKHAHALLTLPIHKKAWEDAGLKYKGHTDALRDFFKKNA
                     IMMLGCKELFVGLFSEHIPLAKVSKKITFKNLSIFLKDFYKETHFKKMGLLGFNPHAG
                     DYGVIGGEEEKIMEKAIAFVNAFLHSKKDEKFFKKALKDENLQKELLLNFKGKGVYLP
                     YPLVADTAFTKAGLKNCNRLVAMYHDLALAPLKALYFDKSINVSLNLPIIRVSVDHGT
                     AFDKAYKNAKINTKSYFEAAKFAINLNSKA"
     gene            complement(24231..25019)
                     /gene="pdxJ"
                     /locus_tag="ACHFOB_000072"
     CDS             complement(24231..25019)
                     /gene="pdxJ"
                     /locus_tag="ACHFOB_000072"
                     /EC_number="2.6.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine 5'-phosphate synthase"
                     /protein_id="HFN5798921.1"
                     /translation="MLLGVNIDHIAVLRQARMVNDPDLLEAAFIAAKHGDQITLHVRE
                     DRRHAQDFDLENIIKFCKSPINLECALNDEILNLALKLKPHRVTLVPEKREELTTEGG
                     LCLNHAKLKQSIEKLQNANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNAL
                     FSNISHTAFALKELGQDKKTLQTQFEKELQNLELCAKKGTELGLKVAAGHGLNYKNVK
                     LIVKIKEICELNIGQSIVARSVFTGLKNAILEMKELIKDEKTSH"
     gene            25075..26049
                     /locus_tag="ACHFOB_000073"
     CDS             25075..26049
                     /locus_tag="ACHFOB_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA family phosphatase"
                     /protein_id="HFN5798922.1"
                     /translation="MLGIDLGSNTLRAVQMDEKLNKLKEYEFVIGAAKNLNQSGEISK
                     EAIQRLKNALSILAKEQDLSKARAVATAAFRKASNTNEIFAHLKEEFGIDFKLIDAKS
                     EAKISVLGMQSGLRRLKIWGEFAYCDLGGASCELSFGKSFKSFDFGIISFYEKNCHSY
                     YKSCISYKKLIKKYPKFIINIKDKKLKIHFLIANPYLKHLAFRAFDEVATIKKELHSL
                     GVKTVVLNSGVPTTLSALKQNISYEKYEVTRVNGKKLCHKDFLNYAIKLFHMEEKKAI
                     KEVGMMRKNYLSAGCLLFYALFDKHKLLVIDEGLREGVCLASMKNIKF"
     gene            complement(26046..26996)
                     /locus_tag="ACHFOB_000074"
     CDS             complement(26046..26996)
                     /locus_tag="ACHFOB_000074"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HFN5798923.1"
                     /translation="MKFSDFFHAWLHESYYKNAVSIGKNGDFFTAVSVGNLFGTLLAK
                     HFLNLIDKKILQPPLELVEIGANEGYLSRDFLAALLELRPEIFSQISFFVIEPHEKLK
                     NLQKKTLEGVEFTHKNSLKECHFKNAFFFCNELFDSFTCELINHDKIAFVENFKLIFK
                     NMDENLITKCKALNLTKGELSLELEKFFKDLDQACERFIFAGFDYGTFNAQNFSLRIY
                     QKHEVFSPFEVSLKDFFGKSDLTYNVNFTHLQKLIKEYDFKPLAFKKQSLALMDFGFE
                     DLLEYTKNKNIKTYESFLSQAKILFFNFDEKFHFFEFQKN"
     gene            complement(26993..27814)
                     /locus_tag="ACHFOB_000075"
     CDS             complement(26993..27814)
                     /locus_tag="ACHFOB_000075"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN5798924.1"
                     /translation="MKALWLFLSLTLWLFGAQNLELIKGQALFLELDKKDFLSLKNND
                     KNIPTFAHPKNQEKILAIFSLPYKNPPQNTKLIAFYKDKKEEIFIKTLEGNYKSEKLQ
                     VENKKIFPPKTVQERIAKELKEANAIYSSYTPKALFNGAFNIPLNSFITSDFGKARTF
                     NEKVASYHSGTDFRAAIGTPIYAANSGIVKIAKDRYFAGNSVVVDHGFGIYSQYYHLS
                     KIDVKVGQKIKKGELIGLSGASGRVSGPHLHFGILAGGKQVDPLDFVSKFNAIFR"
     gene            complement(27811..29805)
                     /gene="glyS"
                     /locus_tag="ACHFOB_000076"
     CDS             complement(27811..29805)
                     /gene="glyS"
                     /locus_tag="ACHFOB_000076"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HFN5798925.1"
                     /translation="MSELLIEIGTEELPAIPLLKELANIEKKWKNILEEYRLVSDFKF
                     YYTPRRLVFFHENFAEKQEDSFAEFIGAPKNVAYKDGVLTPSGQSFLQKAGISENELT
                     FKEIKGKEVLYHQKAIKGLQSQEILGEMIEKFLKSLSFGKSMRWGANSFEFIRAIRSI
                     ACILNDELVNFQSYGVKSAKKTFIHRSVSYDLQDFNNAKEYFELLEKNYIILDPIKRK
                     EKILEQFKLIESQKNIQIGEDEELLAEVVAITEYPNALLGSFEEEFLEIPSEVIITSM
                     RENQRYFAVFNDKGLSNHFIVVSNAVCKDYSKIIHGNERVLRARLSDAMFFYQNDLQN
                     GLKPEKLAKMTYLEGLGTMQDKSLREIKIAEILCQMLHNDKIENISTALKYAKADLAT
                     QMVYEFTDLQGIMGSYYAQKMGLDYEICLAIKEQYLPNSEQAPLPSTEFSSIVALANK
                     LDTLIGLFSIGKIPSGTKDPYALRRAANGIIKIALNLNKEFDIQILLEKLSSHYKSFD
                     MQILKDFIFERLYTFYTVNASFVKAVLSSQNTDLIHINQSVNALIELSKKDNFNENFA
                     TFKRLANIATKNPHKVDESLFVQEAESKLYKAFQEKTKANSLQEKLENLFALKPFIDE
                     FFNQVMINAEDEKLKNNRQALVYEIYAEFLKIADLKELSL"
     gene            complement(29861..30481)
                     /locus_tag="ACHFOB_000077"
     CDS             complement(29861..30481)
                     /locus_tag="ACHFOB_000077"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN5798926.1"
                     /translation="MINVFFDMDGTLIDSANAISCAVNEIRQDLNLAPLSREIIMQTI
                     NTPNIDWAKELYNIENFHHSSFKEGYEKYFVKHYEQSVVLFEGVKELLEFLKNKNCFL
                     AIATNAPQSSLSSILKKHQIIPYFDKILGVSLGIEPKPHPMMLELLKSEAPYKTSVFI
                     GDSQKDKECAKNANLPYFHAKWYQKDLKENEFSNASELKGFLQKYL"
     gene            complement(30478..30810)
                     /locus_tag="ACHFOB_000078"
     CDS             complement(30478..30810)
                     /locus_tag="ACHFOB_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798927.1"
                     /translation="MTKNEEKALRVKYLRNLEKFFNGAISALKKEDFDKTKFEERMLK
                     NAKFFEKNPAVNLNSTYAKNLEFFVNACLDFSKEKSELLNLANALDKQKKQGEKKEKH
                     KNYLKDYE"
     gene            complement(30820..32445)
                     /gene="kefB"
                     /locus_tag="ACHFOB_000079"
     CDS             complement(30820..32445)
                     /gene="kefB"
                     /locus_tag="ACHFOB_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFN5798928.1"
                     /translation="MDNFLEIFLITVAIAIVLNVIFKKFEIPTIIGYIAAGEIISEIY
                     HLSGKGEITHIAEFGIVFLMFTIGLEFSFKHLMAMKQEVFLNGSLQMLTCGFVFMLLA
                     IGILGLGDKSATIVGFALALSSTAVVLKILNDNGDINEQYGRKALGILLFQDIAVIPL
                     LLLVDIFSSNNQNIEKLLFTTLISALILITLLFFIGKYLVDRIFRLIIHTSSQEIFIS
                     TVLFMVIGASFLANYFGFSYSLGAFIAGALIAETKYKHKIEADLIPFRDLLLGLFFIT
                     VGMQIQLDVVAQNWFLIIVLTLLVMALKFGIVFGFLFLYTKKRVALKTAFAIAQIGEF
                     ALAIFSLLQAKNMLDIKTSQILIVVSILTMIITPFILNNIRKITNVVEDIALNTNAVQ
                     NIDSNIKLKNHLVVFGYGRLGQEVVQKIKNTGVPYLVLESDLNLVELGVSRGENVVFA
                     NAAQEETLKIANIEECAVAIITVTNEAKLEILCQVLANYPKPIDTIIHVNGTLKKMLF
                     SSIDENIRIIRSEKVIARNLVQEALECRIHKNT"
     gene            complement(32452..32826)
                     /gene="hspR"
                     /locus_tag="ACHFOB_000080"
     CDS             complement(32452..32826)
                     /gene="hspR"
                     /locus_tag="ACHFOB_000080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat shock transcriptional regulator HspR"
                     /protein_id="HFN5798929.1"
                     /translation="MEQHYDEPVYLISVVAKVLSIHPQTLRQYEREGLIEPSRTDGKI
                     RLYSQRDIDRIKLILRLTRDMGINLAGVDVILKLKNQLHEFENLIDELRSELSKQQDK
                     EAASKAVVKHKNSFDLIFYEKK"
     gene            complement(32842..33735)
                     /gene="cbpA"
                     /locus_tag="ACHFOB_000081"
     CDS             complement(32842..33735)
                     /gene="cbpA"
                     /locus_tag="ACHFOB_000081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ family protein"
                     /protein_id="HFN5798930.1"
                     /translation="MNSLYETLGVSKNASADEIKKAYRRLARKYHPDINKEKGAEEKF
                     KEINAAYEILSDEKKRAQYDQYGDSMFGGQSFHDFSRNTGGVNLDDILKDLFGGGFGG
                     RSRGGFNGFSSKGFSSGFGGFGGFEEEILDSNLELHIPFEKAVKGGEHSFNFQGETIK
                     FKIPHGIKEGEKLRIRSKGKQSRNGARGDLIIIVKIEESPIYTREDDDLYQKVDISLK
                     TALFGGKINIKTLKEGKEEATINITPNSKNNQKIRLKGYGVQNRKSNIYGDMYLNLNV
                     VLPNLDTLDEKFIELLKEKLP"
     gene            33936..35354
                     /gene="htrA"
                     /locus_tag="ACHFOB_000082"
     CDS             33936..35354
                     /gene="htrA"
                     /locus_tag="ACHFOB_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HFN5798931.1"
                     /translation="MKKIFLSLSLASALFAASINFNESTATANRVNPAAGNAVLSYHD
                     SIKDAKKSVVNISTSKTITRANRPSPLDDFFNDPYFKQFFDFDFPQRKGKNDKEVVSS
                     LGSGVIISKDGYIVTNNHVVDDADTITVNLPGSDIEYKAKLIGKDPKTDLAVIKIEAN
                     NLSAITFTNSDDLMEGDVVFALGNPFGVGFSVTSGIISALNKDNIGLNQYENFIQTDA
                     SINPGNSGGALVDSRGYLVGINSAILSRGGGNNGIGFAIPSNMVKDIAKKLIEKGKID
                     RGFLGVTILALQGDTKKAYKNQEGALITDVQKGSSADEAGLKRGDLVTKVNNKVIKSP
                     IDLKNYIGTLEIGQKISLSYERDGENKQASFILKGEKENPKGVQSDLIDGLSLRNLDP
                     RLKDRLQIPKDVNGVLVDSVKEKSKGKNSGFQEGDIIIGVGQSEIKNLKDLEQALKQV
                     NKKEFTKVWVYRNGFATLLVLK"
     gene            35430..36104
                     /locus_tag="ACHFOB_000083"
     CDS             35430..36104
                     /locus_tag="ACHFOB_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN5798932.1"
                     /translation="MTNILMIEDDLELAEITAEYLEKFDMKVDIAHEPYIGLSKLALK
                     EYQLIILDLSLPGLDGLEVCEEIRKKYDTPIIVSSARHDITDKVNALELGADDYLPKP
                     YNPKELQARIKSHLRRISNTKSAIAKSVKDLVYDQYKHIITMKGQELTLTNAEFDILS
                     YLIKKEGGVVSREELVYNCSSISEDSSNKSIDVIISRIRQKMGDDPKTPKYIHSIRGI
                     GYKLTQ"
     gene            36101..37348
                     /locus_tag="ACHFOB_000084"
     CDS             36101..37348
                     /locus_tag="ACHFOB_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HFN5798933.1"
                     /translation="MNKSSIFYTITFIFIFAGVSVILGFLWLIEYDQQNYTRELNTKY
                     SLIANARLLNFAGVISEKEFEEQTKNYNKMDEITEAKQIRKILFRGDVLARVEVNNGL
                     IEIISYNRQVYLNIIYDGKVYLYKDQDYQTYRYFIIKAIAVAVICILVLLYIYIFKKL
                     KPLKRLKKQIDKFAQGKLGDIEDVSTGVDEISQVSEAFYQAIVQIRKLNQSRQFFLRN
                     IMHELKTPITKGLLTLEMIEDNKYKERLNGVFTRLEILINEFAAIEQITSGAAFINRK
                     KYNILDVLDEAKEIAMRDDSNIRIFMEESFFVNVDFKLFTTAIKNMIDNGIKHSEDGF
                     VQIDIIDDYICFKNRGPELNNTLEYYTQAFTQGSKQKSSFGLGLYIVNTILETHGMKL
                     DYLYEDGVNLFYFRNLKSVIVKE"
     gene            37441..37515
                     /locus_tag="ACHFOB_000085"
     tRNA            37441..37515
                     /locus_tag="ACHFOB_000085"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:37473..37475,aa:Asn,seq:gtt)
     gene            complement(37606..37854)
                     /locus_tag="ACHFOB_000086"
     CDS             complement(37606..37854)
                     /locus_tag="ACHFOB_000086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribbon-helix-helix domain-containing protein"
                     /protein_id="HFN5798934.1"
                     /translation="MKRNVKTYSFRMPLELKERLDNLSKNLSKPKSTIVKEAIEAYLN
                     EVEDFSFAVNALEELKDGDYQKASKKIDKIVKNLKQTK"
     gene            complement(37865..38464)
                     /locus_tag="ACHFOB_000087"
     CDS             complement(37865..38464)
                     /locus_tag="ACHFOB_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriohemerythrin"
                     /protein_id="HFN5798935.1"
                     /translation="MLPKWDNSYSVHNAKIDEQHKKLFKLAAKVEVVSDRSVSKNEVK
                     ELLAEFFNYMKDHFNDEEKYMQLIGYPNLEEHRKIHKEIIQTMINLIKDIKSTNDLKE
                     KLYIVAKKWLLEHILYEDMKVEKWRSSSLSTDDGGDISFEAAEDEDNEHPQFYLYTCN
                     CPGKIHDVPYSIHQKIELQGHKFTCKTCKQAIKFYKKYS"
     gene            38612..39277
                     /gene="dccR"
                     /locus_tag="ACHFOB_000088"
     CDS             38612..39277
                     /gene="dccR"
                     /locus_tag="ACHFOB_000088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DccR"
                     /protein_id="HFN5798936.1"
                     /translation="MAAKILLLEDDLSLSEIIEEFLNDEGYEVFLCDNAQEALDMAYE
                     RYFDLWILDVKVPLGDGFSLLKELRKSGKQTPAIFMTSLNTTNDLKQGFDAGCDDYIK
                     KPFELAELSIRVKALLKRAFSHKNEDFEDLGDGFRFEFTTQILYHNNKALTLPSKEIK
                     LLSLLLKNKNNFLSTERIFEELWDYDEEPSELSLRAYVKNLRKILGKEKIINQRGRGY
                     CYG"
     gene            39270..40460
                     /gene="dccS"
                     /locus_tag="ACHFOB_000089"
     CDS             39270..40460
                     /gene="dccS"
                     /locus_tag="ACHFOB_000089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system sensor histidine kinase
                     DccS"
                     /protein_id="HFN5798937.1"
                     /translation="MAKKVIRQILLIYLTTTGIFLTIFFALWYQKLYEELVVLKGATL
                     RENHRNIVISILNSRFTPIDISAKNIAQSTALKFAIFDAKKIVFSNIDFDLRKAKIEL
                     KGRGICDNKVFFLAPMSADHYFLRHASNEEVNTNDGLQILIQGEDVGKDLFWIRTKVF
                     SFAIMAFCILGLISYILVKIALKPLEDKISTLNRFIKDSTHELNTPLSVILMSIEQLE
                     HQNLGDNTKFTRIKLAAKSLSQVYSDLVFYNFPNTLETEKQKFDLRILLEERLEYFKV
                     FFEQKKITLKLDLNQANIFAPKSQISKLIDNLISNAIKYNKKGGVISIILKTNFLSIA
                     DTGCGISKSNLNHIFDRYTRFNTDQGGFGIGLSLVKKVCDDNDIKIICESVENQGSVF
                     KLNW"
     gene            complement(40503..42140)
                     /gene="groL"
                     /locus_tag="ACHFOB_000090"
     CDS             complement(40503..42140)
                     /gene="groL"
                     /locus_tag="ACHFOB_000090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344612.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA];
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HFN5798938.1"
                     /translation="MAKEIIFSDEARNKLYEGVKKLNDAVKVTMGPRGRNVLIQKSFG
                     APSITKDGVSVAKEVELKDSLENMGASLVREVASKTADQAGDGTTTATVLAHAIFKEG
                     LRNITAGANPIEVKRGMDKACEAIVAELKKLSREVKDKKEIAQVATISANSDEKIGNL
                     IADAMEKVGKDGVITVEEAKSINDELNVVEGMQFDRGYLSPYFITNAEKMTVELSSPY
                     ILLFDKKITNLKDLLPVLEQIQKTGKPLLIIAEDIEGEALATLVVNKLRGVLNISAVK
                     APGFGDRRKAMLEDIAILTGGEVISEELGRTLESATIQDLGQASSVIIDKDNTTIVNG
                     AGEKANIDARVNQIKAQIAETTSDYDREKLQERLAKLSGGVAVIKVGAATETEMKEKK
                     DRVDDALSATKAAVEEGIVIGGGAALIKAKAKIKLDLQGDEAIGAAIVERALRAPLRQ
                     IAENAGFDAGVVVNSVENAKDENTGFDAAKGEYVNMLESGIIDPVKVERVALLNAVSV
                     ASMLLTTEATISEIKEDKPTMPDMSGMGGMGGMGGMM"
     gene            complement(42162..42422)
                     /gene="groES"
                     /locus_tag="ACHFOB_000091"
     CDS             complement(42162..42422)
                     /gene="groES"
                     /locus_tag="ACHFOB_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HFN5798939.1"
                     /translation="MNFQPLGKRVLVKRVEETKTTASGIIIPDNAKEKPLMGEVVAVS
                     KEITDIANGDKIVFAKYGGTEIKLDNNEYLVLNLDDILGILK"
     gene            42584..>44250
                     /locus_tag="ACHFOB_000092"
     CDS             42584..>44250
                     /locus_tag="ACHFOB_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798940.1"
                     /translation="MKKIFYGVIAFVVVLLIAIYTILFTSFGNNIVANIAQKKIKESA
                     GLDVNITHFNLHFSSLELQANIANMADFNLQGALSPFKLGFDLDYLISLKQNYAKNLG
                     LNLNQNLSFGGKIQGKASDFTLDGRGYLLGSNVLLNARMYNYSPVALNLDAQNLKIEE
                     ILHLLSYPSYAKGFLNAQAKISAQNLKPDGNIIIKLDTSYINYEAIKKDFSLDLPLNS
                     NPKAEILANVKEDKIYAVSKIYNDYLNLQTQKTLYDMSKNILSTDFNLNIPSLAKLEK
                     LTKTRLNGSLGVIGETSVVNNALSSLNAQVIGLGGEVKASLKNNKIFADINEASLEKL
                     LALAGYGALVSGNLNAKLLNADLDFSNFDLEAKINNAKINTNELKKIAKIGLPNTIFS
                     LDAKANAKNSNISYNALLASNLLNIKKLQGTYNLKNSELNTDLNAFIDDLSQFSAIAG
                     QKLQGKADLNAKAHIIGTQIQNLNANANLADGVIKADSNGKKLDLNIDKLDLSKLFVI
                     AGMPNYASGVVNAKVNLDNIDFNNLNGKANLEAKGILNAATLSKILN"
BASE COUNT        14617 a         6657 c         7025 g        15951 t
ORIGIN      
        1 tatgaacttc ttgaaatcac gcaaaatgct gataaagaaa ctataaaaaa ggcctataga
       61 aaaatggctt taaaatacca tcctgataga aatcagggcg ataaagaagc agaagataaa
      121 ttcaagcttg ttaatgaagc ctatgaagtt ttaagcaatg atgaaaagcg agctatttat
      181 gatagatacg gaaaagatgc tttaaaaggc ggtggatttg gttctaatag ctcaggtttt
      241 ggtggttttg aggatttagg agatatattt tctagttttt ttggagaggg ctttggttca
      301 tcatcgcgtc gtagaaaaag ttcaaatgat gaaaaaatcc cttcagattt tatctttaat
      361 ttaaaattaa gttttaaaga agcggttttt ggttgtaaga aaaatataga ctttacttat
      421 aaatgctctt gtaaaacttg taatggaaca ggggctaaag atggaaaact tcaaacttgt
      481 ccaaaatgtc aaggtagggg acaagttgga gtttctcaag gttttatcac ttttgcacaa
      541 acttgtcctg attgtcaagg aagtggagaa aaagctagtg aaaaatgtag tgattgtaaa
      601 ggtttgggtt ataatgaaag caaagatagt gtcgagctta atatcccaga aggtgtagat
      661 acaggtatga agcttcgtgt caatgctaaa ggtaatatct taaaaaatgg tactagaggg
      721 gatatgtatg ttaagatcat cgccgctgaa gatgatactt ttatcagaga tgatgatgat
      781 atatatatag aatttccagt gttttttact caagctatct taggagagag tataaaagta
      841 cccaccatac gcggtgaagc gaccttaaat ttaccaaagg gtgctaaaga tggacaaaga
      901 tttgttcttg aaaaagaagg ggtaaaagat gttcatagtt ctcgcatggg aaatcaaatc
      961 gttcaaattt ctatcaaatt cccaacttct ttaaacgatg aacaaaaaga acttttagaa
     1021 aaactaagtg aaagttttgg catcaaagat ggtatgcatc aagagcaaaa agggcttttt
     1081 gaaaaaatca ctaattggtt taagtcttaa ttttcctaaa gcgttttagc ttgggaaaat
     1141 tttttatata aatttaagtt ttaaaaatca ggcataaaaa aaggcggagc aaaactccgc
     1201 cttgaagtta gacttgaaag cttcttagaa tttgtaaaga gcttgaagtc ttacagtgct
     1261 atgatcagca ctttcattag tgtttacacc ttgatctagg ttcacataag aatagaatgc
     1321 tgagaagtta agttttggag agtatttgta atctactctt gcaacagctt caagtttttt
     1381 accaccacct aaatgattag tagcttctgt ttttgttcca ccatatacga agtcagcacc
     1441 aacgcgaact gtttcgttga aagtatatcc accagttaca taaccgaaga tatttctacc
     1501 agtatcacca tttagtcttg aaccagtagt atagaaaatt tcctcacctg caagtaaaga
     1561 accaagatta ccttgatctt cgattacaac tgtagaagct ttttctttat caccgtagta
     1621 taaaccacca aggctagcat cccaaccatt tacttcaatg ctacctttta aagcaaataa
     1681 attgccatta gcgtgtcttt tatcatcaag ttcgctatca aggctatttc ctaagtaagc
     1741 accttcaagt gtccagttga ttccatcaaa gatagttgta ctataagctg catctacagc
     1801 atagaagaat gctacttgat cccagtaagc taaccataat tgtggattaa attgtccgcc
     1861 agcaagatca taagaaccta cagcagcagc accgtaaaga tttcctaatg aatctgcttg
     1921 aaaaggaact gcgttctgtg ttgtagatat agtactttgt cctaataaat ctgcaccttg
     1981 ctcttccgcc ataaagctat ctacagcaaa agcagctaga gttaaaccat cgatgctgtt
     2041 gtttactact ttgatacctg ttcctactaa accatcaact ccattgtcag tccagatagt
     2101 gtttagttgt tgtttaccag cgattacgct tgtagcaaca tcttcatttg tataagttaa
     2161 gtataattga cgaacaaaaa gtcctttttg atcatttttt attccattag caccataacc
     2221 accatcagca gcattatagt caaattgaac aaaagctttg aagttatcag ctatagcagc
     2281 actgaagtta acttgtgctc tatatttgtg atcttgtttg ctgttgttta aatttgagtt
     2341 gttaacgaaa tttttatcaa aattacctgt atcgtatctg tatcttaata cacctgatac
     2401 atcaacatct ttgatcgctt cttcaagtgg agtagcgtta gctgctgaaa aagcacctgc
     2461 agcaagagct gcaactaaac taagtttaac tagtttcatg agaattctcc ttgtcaaaaa
     2521 ttaataaaac atcgtaattg tagcacataa atttggagtt ttttcttaag aagcacttaa
     2581 aatagtaaaa attttaaatc cgaaggataa aaacatctaa agaaaagcct agctaaaggg
     2641 atttaagcta ggcgtgtaat tttaaggagt ttttcttatg aatgtttttc ggttcgttta
     2701 gaagtataag cctaaaaagt aaacgagaag taatatatag ttgttttaaa ttattttgat
     2761 aaaaaaacaa gtaaattttt acaagctagg gataaaattt tataagtttc atcaaaattc
     2821 ccactatacc aaggatcagg aacttcatcg tagtttagac taggactaaa atcagtgatt
     2881 tttaaaactt tgttttgggt gttggtgaag ttttttaaaa catttttgaa gttagaattg
     2941 tccatggtga ttaaaaaatc gctttcatcg caaagctttt gagtgagttt tttgcttgtg
     3001 aagtttttgt gttctatgtt aagttgaaca agcttgtttt tggtgccata gtgcatacct
     3061 tctccatcgt gctctcctga agttccagca ctgtttataa aaaattcttt ttctaaattt
     3121 gcttttttga caagatcttt catgataaat tctgccatag gcgaacggca tatattgcct
     3181 aagcatataa agagtatttt tttcattttt atccttgagt tttaattaaa aattataaaa
     3241 aatatcatac aataaatcca tggaaaattt caatagaact ttgcttgtgt gttggtttgg
     3301 tgtttttacc acaagtatgg ggcttagtca aatcgctccg attttgcctt tttatatcaa
     3361 agaactagga catgttgata cgagcgagat agcgttttat tcaggacttg cttttgggat
     3421 cactccgctt tttatggctg ttttttcacc tttgtgggct tttttgggtg caaagtatgg
     3481 ttataaaaat atgcttcttc gtgcaagttt tggaatgtcc gttttaacct tatggcttag
     3541 ctttgctcat agtgctttag aagtggtttt tgtacggggt ttaacaggga taatttcagg
     3601 ttttacttct gctgctgttg tgtttatcgc cgtgatagcg cctaaagaaa aagtggctta
     3661 tgctttagga actctttcta cggcttctat aagtggaagt ttacttgggc ctttgtttgg
     3721 tggctttgtg gctgaatttt ttagcattag tgcggttttt gatgtggtgg cttttttgat
     3781 cgcttgttct tttgtgacga tttatttttt catccatggg agaaaaattc aaaaagaggc
     3841 gaagaaaaat actcaaaaag tgaaagaaaa caaaaccctt atcatcgttc tttttatcac
     3901 tacttttgtg atacaatttg gtacttttgg agtgatgccg attttaagta tctatgttga
     3961 gcaaattcat caaggtggaa atttggctct ttgggcgggt atagtggtgg ctgcaaatgg
     4021 gattagcaat ctttttttcg caccaaaact tggaaaaatc gccgataaga tagggcctag
     4081 taagattatt tttggagctt tgatattttg tggaatttgc ttttacttgc aggctgtagc
     4141 aagtaatgtt tatacgctta ttttcgtgcg tttacttata ggtgtaggac ttggagggct
     4201 tttgccttgt gtgaatgcct tgcttaaaaa aagtgtgagt gctaaaaatt taagtgtgat
     4261 ttttggtttt aatcaaactt gtcaattttt gggaaatttt tgcggtgctt ttggcggagg
     4321 gcttatggct tctcatttta gcgtggaatt tgtttttact tttgtgtgtt tgatttttat
     4381 cattaatgct tttattttct tggcgtttga gaaaaaatat atcttttcaa atcaaggttt
     4441 ataaatttag aaaggtttaa aatggaaatg attttatttg ttttagtgat gattttactt
     4501 gtgcttttgt ttgtagtgct ttttaggcag tataaaagcc ctaaaataga agaaaaaagc
     4561 acgcaaagtt ttagcgatat catgcaactt aaatccatag gagaattaag tgtttttcaa
     4621 gtttttagta aagagattgt cactaaaaaa gatagcgctt ttaatggaat ttggaaaaat
     4681 cttttaggat ggtctttgag tgaaagacag attgctttga tttttgaatt tgagatcact
     4741 ttcttgtatg atttaaggga taaaaacttt gatattttgc ctttagggga cgatgcttat
     4801 aagatcatca tgccagagtg tagatacaaa cacagcatca tagatatgaa attttatgat
     4861 gaaaaaaatg ctaaattttt acctttttta ctgcctgatt ctatcaatag tacggggatt
     4921 agttttagtg aaagtgataa aaacaaactc ataaaagaag ccaaagatga ggttaaagac
     4981 ttgtctttaa atcttatcca aaatttagaa agcaaaatcc ataaaagtgc taaggatact
     5041 ttagaagcta ttgctaaagg ttttggggct aagagagtgg aatttgaatt taaggataac
     5101 acacaaaagc tagatgtaag ctagcttttt tcttttcttg cttgggtaat gctttttcca
     5161 cctagtccgt aattatccgt atcgatttca tcgataatta ccacagtcga gcttttattt
     5221 ttgtttaaaa ccttagcaag taaatccgtt actcctgcga taagctcttg tttttgttct
     5281 gttgtaggtt ctccgttttc tttggtgatg cgtatattta caaaaggcat ttttaactcc
     5341 ttaaattttt ataattattc taaaatctaa aaaattaaaa tattctttta ttttgtaaat
     5401 tttttgatta tttcatagtt ttgtaaaagc tgttcaaaag aaaaatttaa atttgcagga
     5461 gaagttgagg gtagggctat ggcttctaag cgagggtgga atttaacaaa aaatctataa
     5521 gcactttgtc ctgtagtaaa aatggcttga attttggttt gagaaaggat taggtttaaa
     5581 tcattggctt ttgcataact tattgtttta tcatctgaat tttttatctt gcaactttga
     5641 agtacatccc aaagagcgat atgttttttt cttaaaaagg cttgttgttc tgcgatattt
     5701 tctaatttta catcaaaaag tgtttctagt ataggccaaa aacgatttct tgggtgttga
     5761 taataaaagc cgtcttgtct tgatttaata gaaggaaaag atcctaaaat taagatttta
     5821 gaatctttgt caaaaaaagg ctcaaaagga tgagttagaa attcactcac tcacacaaat
     5881 ccacagaaat ttttccgttt ttaatttcgc tgattttcac ctttaaactt tggttttcgc
     5941 ttaaattaag atgcttgctt tttgaactat gcaataaacc atcaacacca tttttaagtt
     6001 ccacaaaggc tccaaaagga gcgatttttt taacaatacc ttgaaattct tgcccaagtt
     6061 caaagcctga tatatctttg tctttagagc cttttttagt tcctttttga gagcttgtga
     6121 tgtttatgat gtagtctttt gcggctttga tttgctcgtt ttgactacct gctattttta
     6181 cttcaccttt ttcgcgatct aagtctatag aaacgccaaa tttttctatg atttctttga
     6241 tggtttttcc agcttgtcct atgatatcaa cgatttttga aggatcaacg ctaaaaagct
     6301 caagtttagg taaaacttct tcattgacta tgatttcttt tgcagcttct tccatgatat
     6361 ttaggatgtg aattcttcct tctttggctt gatataaagc ttgttttagt gtttcttgat
     6421 cgattccgcc tagttttata tccatttgaa gagcagtaac gccgtctttg ctaccggcta
     6481 ctttaaaatc catatcccca tcatgatctt caagtcccat gatatctgtt aaaacagcat
     6541 gcttgttatc ttcaaagata agccccatgg ctactcctgc aacaagtttt aagcttggca
     6601 ctcctgctgc ttttaaggct aaagatccgc cacaaaccgt tgccatagaa cttgagccat
     6661 tgctttctaa aatttcactg actaagcgga ttatataagg atagttttca tccacgcttg
     6721 gataaagtgc tcttttggct aaatttccat gtcctagttc tcttcttcct ggagctttga
     6781 taggacttgc ttcgcctact gaaaaacctg gaaaattata atttaccata aagcgttcgc
     6841 ttataggatt tttttctgta agcaagtcta tcatttgagc atcgttttcc ccgcctaagg
     6901 ttgcaaccac tagggcttga gtttgtccac gagtgaaaag acaagagcca tgagcgtttg
     6961 gcaagatatt ggtttctata ctgataggac gaacctcgtt taaacttcta ccatcagctc
     7021 ttttgccttc atttaaaatt tgctcacgaa taagtttgcg tttgacttta gctaaggtat
     7081 ttaagacact ttcttcgctc cagtctttag tgatttcaag atttaaaatt tctttagcga
     7141 ttttatttag ttcgcttgct ctttcgcttt ttgccatttg attgatggct tctttgattt
     7201 gtttttggaa attattttct ataaaagcta aaatttcagg atgttcaatc tcatttttta
     7261 gttcgatttg agaatttttt ttgtgtttgc taaaggcttc ttcataagca tttgaaccat
     7321 ttaatatagc tttttgagct aaatttagag cttctaaaat ttcatcttcg ctaagttcat
     7381 tcatattttg tgaagtggtt tgagttaaaa catcagcata gggagcttcg ataaagattt
     7441 cattttcttt ttgatcaggc aaggctctca tttctatcat caaaagctca tcttttacac
     7501 ctgctacata gagatctagg gtgctatttt gaagctcttc attgtttgga ttgagtatga
     7561 aatttccatc tatctttcct atacgcacac cgcatactgg agctttcata ggtatatcac
     7621 taagataaag tgccacgctt gcggcattta agctcattac ttgcaaatct actttaggat
     7681 cagctgagag aaccatcaca acgatttgag tcggataagc atagcctttt ggaaaaagag
     7741 ggcgtaagct tctatcgata atgcgtgctg ttaaggtttc tgcatcgctt ggtttggttt
     7801 ctcttttgac ataaccacca gggatttttc ctgcggcata agctttttcg atgtattgga
     7861 cggttagagg taaaaaatct tcttcaactt gtttttcttc tcttgcaact gtagctagaa
     7921 caatgctttt accttgtctc attaaaacag caccggcagc ttgtttggcg actttgtcta
     7981 tatcaaatat ttctgtattt ttgttaattt ctatgctgta ttgcattatt tttccttttt
     8041 taccagataa taaattcgta aaatttttta aaatatttag caaatttcat cctttttaaa
     8101 ttttgttttc actttctgct aaagagaaat cgtattttac ccctcctaaa ggatagaagt
     8161 tgaaaataaa ataaattccg ctttgatttt tagctgtgat accaccactt gtgagttgtg
     8221 gatcgattct ttctctatac attaaagaat agttccaaca ttttctttgg taggtatagc
     8281 caagttccca catgtttgta tgagctcttt gagtatcaaa ccaaattcca ccaaataaat
     8341 tgtaattagg tgtggcaata taatttgctc ttgtaccaat aaagctatat tttccatact
     8401 catcgttttg ataagcatga gaaaacatcc aattaaattt tgaatttgta ttgacttcta
     8461 tttggctgat gacattggta aagcgacttt gttcataaga gtaaagcact tcgctgttga
     8521 gattgatgtt ttcattaaaa taataagtta aaagattttc aagttcatag aattcatttt
     8581 gtttattgag atagtcaagt gaaattctgt gtttgagttt tttttgtcct tcgttgttat
     8641 agaaatattg cacagcataa agacttgtat gttcgttttc tttgtcgtat tcttcaagat
     8701 aatcttgcgt gattttacct gattttgctc ctggtaaaat gtaattcacc cctaaattta
     8761 aagtatgaaa gaaattttca taagcttttg aaagatcggt gtagagatta aaatcatgag
     8821 tgtttctgaa ataatgctca tggtttcttt cgggatcgtt gctataattt acaaaagaag
     8881 cataaaatct ttctgtaaaa gtaaagtgta aaaagtctcc aaaaaaagcg ttgtgatacg
     8941 agataggcaa gtctaaattt agctcatttg cataagaacc agcaggtcgg taaaaattat
     9001 gaaatgaagc atcaaatgaa taacgcaagc gttcatcaaa aaggttattt aaaaatctat
     9061 gatattgaaa gcttggatat tcttgtaagg ttgtattgtt gctaagttta gatgtgtcga
     9121 tataatatct tgcataagct ccgtaaaaat tgttttcatc agctaaaaaa taattgattt
     9181 tggaggttac aagcgagtta agatctcgat aatccctact tcctaaattt aaataatcca
     9241 catcgttgag ataggttgca tctatccata gaccttcttg aaaattatca ctgagtaaag
     9301 atttgattaa atcatctctt gagtatttta gttctattcc atagtgggtt tgatttttca
     9361 aattttcatc gtgaaaatag gagctatttt ccctaaaagc accaaaattt aattctcctg
     9421 ttgaatatgg agaatcaaga aatcttaaag tagaataaag tccaaaacca cggtttgttc
     9481 gaatttgtgg atcaagttct aaatcccaat tttcttgagt ggctatataa ataggttgtt
     9541 catagtataa gccttcgcta ctttttaaaa cgatttttgg gattaaaagc ccgctttgtc
     9601 tatgagtatc agcgctaaat ccaaaataag gtagataaaa aactggggta tttttaacat
     9661 ataatcttgc attgtaaaga tgaacaaaat tagtttcccg gttaagccag ccttttgaaa
     9721 aacgaatttc ccaatcagga tcttcaacat tgcagcttga aactgctgaa attttgcttt
     9781 caaagacttt atcatttaga tggcttgttt tgctttgaaa ccatacttca agattgttat
     9841 tggaaaagaa aaaattacta aaatcggctt gattggaatt taggttgatt ttagcataat
     9901 cagaatgtga tctttcgttt tgtcccctta ggatgttaac atcaccaaaa agctcaacat
     9961 cttcggtttt ttcattgtaa attgctttat tggcagtgat gaaataaaaa tcagaaaaaa
    10021 taacaacatc attgtttgca gtaagaatat caccttcttt ttttgcatca agagcgtaaa
    10081 tatcaacttg tgctgcattt aaagctatgc tagttcctag caatagggaa aatttacgcc
    10141 acatcgacta ctattgtcct tgctagataa tcctcccaag ctttgcgtaa atcattactt
    10201 aaagcccaag caaacccaag cataaacgcc atagcactaa cttgtcttat ggcagatctg
    10261 atgcaacttt ggatgagatt gggtttgtca agaagatttt catccaagat gataattttg
    10321 cataatattt ttcccaaact tgccccataa agataagtaa aaattgcttg ataactaaaa
    10381 tgaagcaaga tgaagccaag ataaaaattt cctataattt gagtcgtttc aaataaatct
    10441 tttgcttgga ttagacgatc ataaaaaatg ataaacacaa tcaaagaaat aaccatatca
    10501 tcgattaaaa aagctagaac tctttttcca aaacttgcta tttttagatt ttcacgctct
    10561 aagcggtctt gtaaattttc tttcatttaa gaacctgatg agcgatgtct tttctgtatt
    10621 gttttccttt gaaatttaca ttatcacaaa gtttataagc atttttttgc gcttcttcta
    10681 tactttttcc tgtgccaacg caaactaaaa ctcttccacc atcagccatt aatttgccat
    10741 cttctaggct tactccagca taagaaatat gagagttttc aggaatgtta tttacagtaa
    10801 tttcactttt tggtgaactt ttgtaaggat agttttcact cgcgcataca acccctactg
    10861 caaattcttt tttgattttg atttttgcgt gtcttaagcg tctttgagta gcagctaaaa
    10921 taagctctaa aggatcttcg attaaaggca ttaaaacttc acattcagga tcgccaaagc
    10981 gaacattaaa ttctaataca taaggtttat ttccaacgat catagcgcct ataaataaaa
    11041 cgccacaaaa ttccgctcct tcttttttca tacctgctaa agtcggtaaa ataatatctt
    11101 tttgaacttt tctaagcaaa ctttcattcg ctaaagagct aggggcgtaa gcacccattc
    11161 caccagtatt tggcccttga tcattatcga gtaatttttt atgatcttgt gctgcaggaa
    11221 gtaaaacaaa atcattgcca tcacatactg caaaaatgct taattcataa ccatctaaaa
    11281 attcttcaat tacaacgagt tttccagcat ctccaaagct ttctccgctc agcattttag
    11341 ctgtttcttt tatggcttct tcatgagtct tggctatgat aacacctttt cctgcgcaaa
    11401 gtccatcggc ttttactact ataggagggg ttaaactata tataaaattt tttgcttttt
    11461 caatgtcatt tgtgtttaaa aatttggctg ttttgatgcg gtatttttta agaaagcttt
    11521 tcataaaaga ttttgaggtt tcaagcattg cagcagcttt acttggccca aaaatagcaa
    11581 gtccttgttg tttaaaaata tctacaacac cttcagctaa aaaactttca cttcctacta
    11641 tacaaagatc aaaacctttt tcttttgcat aggttgctaa aactactgga tcttttaggt
    11701 ttaaatttgt tccaagactt tcggtagcgc catttccagg agcaaaataa aactctaaat
    11761 ttttgtctac tcttcttaag gctaaagcaa tagagtattc tcttgcacca ctacccaaaa
    11821 tcattatttt catttatatc tccttttaaa cccaaacagc cgtttaacaa agattgaccc
    11881 caaaaagtca aagaaaaccg ctaggtaatt tttaaaggct gcaacttctc gcttttttca
    11941 aagctcaaac aatgccacag aacacggtaa atcacacaat cgcagttaat aaaaatgtgt
    12001 tggatcactt taaatatcac aaactgttta ggcaaggaaa ttataactta atttagctta
    12061 aatttctatg tcttaaatca gtttaaattt ggtttttcct gatttgtcaa aatgctttcc
    12121 ttgtaaaata atatcggcaa cattttccca aacatgtttt tcatcaatat agactatatc
    12181 aaaggtgtta tcacgcatta aagactgata attcactttt ttaggtgcgt attttactaa
    12241 ataatacgga ttttgtgaaa agttttcaat ttttaatttg cataataaat ctaaatccga
    12301 tgtgacaact aaaaattttt ttctttgttc ttttgtgatt ttttgaatat acactaaaag
    12361 tttttgatca aaaggattta gagcggattt atttaagcga cttaagtaat gttctgcaaa
    12421 agaaagagaa cagaaagaat tttctatatt actcatagta aaataagaat ttttaatccc
    12481 tgatgatttt aaagataagt gccaaatttt aaaatccatt atggttgcgc atagatttaa
    12541 acctgtgaca atttttttaa agagcttttc tcgtgaaagt ttaaaagcat tttcgaaaat
    12601 attgtaattt tttttataaa aatcttccct tatagcatca agtcttttta gtgttgttct
    12661 gtagtattcc gcttcttttt gtagtttagt taatctttct tgtcgagctt taagtttttc
    12721 agggtctgca ttggccgcat tgcttttaag atttatttca gattgtaaag ttttcatttg
    12781 tgcttcaagc gaggctagac gattttttct tgtatctatg gtggctacta aagcttggta
    12841 atgacactgc aaagataaaa aagtttcgtt aaaaatttta gtgatatttg gtttttgatc
    12901 agctatcatt tgcttgtatg aattctctaa atgcatcatg atgcttttta atgcgctaaa
    12961 ttgggtttgg tctatgctat tatccataaa aattaaagta tcataagctt taaataaaaa
    13021 tcttttaagt ataagataat caagtatgca aggaatttcc ttttcatctt gtagattggc
    13081 ttgaagcgtt tctacggata aaatttcatg agcaaaatat ttttgtatag cttgaggtat
    13141 agtaaaagaa agaggaattt tttctatagt gtcaaagtct gtcgttctat aaagttctgt
    13201 tatataagca cttcttcttg agttttgtaa atcttctaat tcatcatcat tatcagtttt
    13261 ccaaaaatca tgctcagtga taaaatcccc ttctttaaat tcttgaaatt ttgaaggttt
    13321 tatacctgtt atggttttgc ttgtttgaac gggcttgccg tcttctgctt ttttttcgct
    13381 agaaagagtt ctaaattcca caagcatgcc aacacttggc atactttttt tatcattcca
    13441 aatttggcga ttgaagtcaa aaaaggtatt tgctgagttt gtaacggttc cacgtcctgt
    13501 agaatccata taaatagcta tttttccatg catatttctt ccttgaaatt tcttgaataa
    13561 attctagcct tatttttata aaaattttat aataaaaata agagctagaa aaaatggatt
    13621 attcccattc tatggttgca ggtggtttgc ttgagatatc ataaacaacg cgatttatac
    13681 cttctacttc attgatgata cggcgactta tgttttctaa aacttcgtaa ggtaaatgcg
    13741 agaaagtagc tgtcatacca tcacttgcat ctacaacacg tatgcaaact gcattatcat
    13801 aagtgcggtt atcccccata accccaacgc ttttaacatt taaaagcacg caaaatgctt
    13861 gccaagtttt atcataccaa cctgtacttt taagttcttc gagtaaaatt acatcaacct
    13921 tgcgtaatag ttctaagcta gggcgattta cttctcccat aatgcgtata gcaagccctg
    13981 gcccagggaa aggatgacga taaactactt ctttgctaag tccaagctca agtcctaagg
    14041 cacgcacttc atctttaaaa atttctttta aaggctctat gagtttaaga ttcatttttt
    14101 caggtaagcc ccctacatta tgatggcttt taatggtttt gcttgcacct acaacagaac
    14161 tttctatgat atcagtataa agtgtgcctt gagcgagata ttttacatct ttatgttttt
    14221 ttgcttcttc ttcaaaaact tctataaagg tatttcctat gatttttctt ttttgctcag
    14281 gatctctaac attagccaag cgacttagga aaatttcact tgcatcaatg ctgataagat
    14341 cgatacctaa ggtattttta aacataaatt caacttgttc tttttctcca cttcttaaaa
    14401 gtccattatc tacaaaaact actataactt gttcttttat agcactagct aaaagtgcag
    14461 caactacgct actatctact ccgccactta ctgcacaaag cactttatca ttgcctactt
    14521 cttcacggat tttttctgct tgagtttttg caaaagagcc catattccaa acactttcgc
    14581 aattacaagc gtatttagca aaatttttta agatattttt gccaaattca ctgtgttgta
    14641 cttctgggtg aaattgtaag gcaaaaaatt tcttatcttc gttgccaaaa acacaaaaag
    14701 ggctattttc acttgtggct aaaacttcaa aaccatcagg taaattttct actttatcag
    14761 aatgactcat ccaaacggtt tgcttttttg gaagattttt aaataaagca ctgtcttttt
    14821 tgatctctat atttgcttta ccgtattctt tatgtcctgc aggtgcaact gtggctttgt
    14881 aatgatgtgc cataagctgc ataccgtaac aaattccaag aacaggtaaa cccaagtcaa
    14941 atatgccttt atcgcaaaaa tacgcatcag ttgcatatac gcttgctgga cctccgctta
    15001 aaataatacc ttttggttct ttcgccttaa tatcagctaa gcttacatta aaaggtaaaa
    15061 tttctgcata aactccttgt tcccttaagc gtcttgctat aagctgagtg tattgagaac
    15121 caaagtctaa aactaaaata tctgcttttt tcattattta ccacctatgt aattgttcgt
    15181 attttttaat ggtttttacc gagccatttt gttcatagct tgtgtattga gggttgcctt
    15241 tatatccgca agcacagaag aaaattaaga aaagaaatgc taaaatcatc ttatgggaaa
    15301 aagaaataat attaagatga ctaaaaacgc tagtgctgtt attaatgaat tgatggataa
    15361 acctcattat aagcctttaa aaaccttatt tttttgcaaa gattttttaa gttcttttcc
    15421 gcttgctaag caacgtttga ttgctaaaat ttatgtaaaa aatcatattt taaatataat
    15481 aaccttacat ccagcagctt atcaagaatt aaatcatgat gatagcaaaa tttatattaa
    15541 atttctcata aaagcatatg gacaaaaata tcctttaagt ggatttgttg atataaaaga
    15601 tataaaaatc ttttcccaaa aatacactta tgcagtaaat aaaaacaaaa atgatgaaaa
    15661 cctctctaaa aattcttatt tggagctttc taagggtgaa tttaaaaatt gctttaaaga
    15721 tgaaaaatta tttaagaaat ttgaagattt aagagaactt ataaaaaaag gttctaatct
    15781 tgactaaaga gaatttagaa aatgagctaa aaactcttcc caatagtgct ggagtttatc
    15841 aatactttaa tcaagaagga aagcttttat atgtaggtaa ggctaaaaat cttaaaaatc
    15901 gtgtcaaatc ttattttgct tttactccaa atttacatgc aaatccaaga aattctttaa
    15961 gaattcaaaa aatgattgaa gaaacagtgc atttggaatt tatcactact aattcagaag
    16021 ccgatgcttt gattttggaa aattctttta tcaaacaact gcatccaaaa tataatattt
    16081 tgctaagaga tgataaaact tatccttata tttatgtcaa ttttgaagaa gaatttccac
    16141 gctttgagat cactagaaaa ttagtaaaaa aaagcaaaat taaatatttt ggcccttttt
    16201 ttaaaggcgc tagagagctt ttagatgcgc tttatttata ctatccttta aagcaaaaag
    16261 caagttgtaa atccccttgt attttttatc aaatttctcg ttgccttgcg ccttgtgata
    16321 aacgcatcag caaagaaaaa taccttgaaa ttttagatga ggctatgcac gcgcttttaa
    16381 atcctagtat tttaataaaa aatttagaaa aacaaatgct tgttttagca cagaatgaaa
    16441 attatgaaga agcagctaaa gtaagagatc agattgtaac gattaaggat ttagaagtta
    16501 aggttgaaat ggatgttgca aaattagaag attttgaagt gtttgcttta gcttttgaag
    16561 attctatgct ttcaaccttg cgttttgtag tgcaaaatgg aaaaattatc agtgcaaatt
    16621 ctaaaattac tcctataaaa aatgatatac aatgggatca aaatgaaatt tataagcaac
    16681 tgattttaga aaattttagc atggatattc ctttgcttgc aaatgttatt tatgtttatg
    16741 aagaatttga agatagagtg cttttagaag aaattttaag ccaaaggttt gataaaaaaa
    16801 tcagtattaa aatccctaaa ataggagaaa aaagaagaat ttgtgatttg gcttttcaaa
    16861 atgccctttt aaatatagaa aaagagcaaa aaaatcatga ttttactata caaaaagaat
    16921 taaagtttta ttttgagctt gaaaatttac caaatgatat agaaattttt gacaattctc
    16981 atttgcaagg cgtggcaaat gttggagcta tggtaactta tagaataaat tcttgggata
    17041 agtcaaaata tagaaaattt catttaaaac ataaaaatga ctatgatcaa atgcgtgaag
    17101 ttttaacgcg tagggctttg gactttgata aaatacctcc tcctgattta tggcttatag
    17161 atgggggaaa ggttttgctt gatttggcta aaaaaatcat tgtaagtagt ggggcaaatg
    17221 tcgatatttt agctatttca aaagaaaaaa tcgatgcaaa agcacataga gctaaagggg
    17281 gtgctaagga taaaattcat tccttaaaag gagaatttag tctaagcatt aacgataaaa
    17341 aactacaatt cttacagaaa ttaagagatg aagcacaccg ttttgctatt agctttcatc
    17401 aaaatactaa gaaaaaacag gacttgaaaa gttctaagct tgcaaattta ggacttagtt
    17461 caggggttat acaaaaactt ttagcgtatt atggaaattt tgaatctata tataaggctg
    17521 attttaaaga tcttacaatg cttgtaggca ggaaagcggc gcaaaagata aaggaaaatt
    17581 gatttgatat tagcagggat aatttttatt tttaatctaa ttttagcgta tttaagtatt
    17641 gatatctcaa agcttgatag tgttgctgaa caactgaaaa taggtatgtt ttctagcatt
    17701 tttgttttat ctttaacact ttttattttt gcttttagac aaaatagaaa tataaacaaa
    17761 atatatcaaa aaatttttta catgcaaaat gattttttaa attttcaaaa aaagattgat
    17821 gttgatagcg tgcttgattt gttaaaggaa aaatttgaaa ctacgggtca aaatttaact
    17881 aaaacatccc atgaaaaaga tagatatttg catttattgg aggaaaattt atatcagctt
    17941 ggaaatatat ccaatgcaat gcgttgctta aatgaagggt ataataaaga aattaattct
    18001 ttgattttaa atgccttaaa ttctcaaaaa gatcaaatta gattagaatt aaatgaggct
    18061 ttagagcatc ataaaagcat tatagggaca tctcatggaa aggttttgca atttgaagca
    18121 agtgtggcta tagttaataa tgatgagctt gagaattttt tacttgcaaa tttactttcg
    18181 tattttggca tagaaagcac ttgttttaaa aatttaagtt ttgatgttaa tgactttcat
    18241 ttgattttta tcaaggataa aattttcaat aaaaatgtaa agaaaaatta tgattttata
    18301 gtgatgggtc ggcataaaaa tacacattat gagtattttt taactttacc ttttgaaaaa
    18361 aaagatcttg aaaatatttt gcaaaacaag cttgataagg tttgcacttt aaaatttaaa
    18421 accccttatc aaaataatgt attgcttttt aaacaaaatg attttgatgc aaccttgttt
    18481 tttaatataa tagaaaaaca atgtgataaa aatatatgta taaattcttt tagtcaatta
    18541 aaacaagaat taagcaagga gacttatcgt ttgattttac ttgattatga attaattaaa
    18601 tttgatcttg agcaaatgag aaatttgcta agtgcttata aaaaacagca tccacaaagc
    18661 catatcatct ttttttcaaa ggaaaaagtt agggattttg attgtgtgag tgaagtttta
    18721 agtgatgtaa gtagaaatga tcttataact ttacttagaa agtatttacc aaaggcctaa
    18781 gctttataaa atttaactcc agctaaatcg agaattttta cctttttttc tttgataagt
    18841 tgatttaaga gagttttgga ttgttcatca aatttcactt caatgtctat ttcgctttgt
    18901 gagcgcaaat gaagcatttt taataattct tcttcattga agcttagttt ttcaccttca
    18961 taatgtcttt tggctaagag tacaggagta gaatctataa gtttagaaag ttctaaaagt
    19021 ttttcttcgc ttactttttt aacggcataa gcaggaggtc tatctatggt gcttagatca
    19081 acccttaaag gcatgatttt ttttaaagct tgattaagtg cttcaaattc ttcttcgttg
    19141 tcattaagat ctttaacaac tagaatttcc ataatcaaat ctccgttaaa tctagctcta
    19201 aaatctgcca ttttttctat cattttttct aaatctatgt tttttaaagc tctatcaata
    19261 cgataaaaag ttttagcaac tgcactatct aggctaaatt tgaccacatc tagttttagc
    19321 aaagcattaa atttgtcttc gtctaataca gctgtgccat tgcttaaaat aagcaatttt
    19381 ttatctttag caatgctgcg taaagataaa ataagctcat ttaaatgagg ataaagacta
    19441 ggctctccgt tggcagtaag ggtaagaaaa tcaaattcaa catttttttc aagcatagct
    19501 ttaacttcag agataatttt atatatgctg ataatttcat cttgtttttc ttgggctttt
    19561 tttggatcaa gctcgcagta aacacaatca aaattgcatt gttttttact agggcttaaa
    19621 tctataccca aagatcttcc aaaacgccta gagctaacag gaccaaagag tattttcatt
    19681 tagctgaact ttcttgtaca agcttgataa aatattttgc attttcaaca ggaatatcag
    19741 gcaagatccc atgtcctaag ttgaaaatat gagctttatt ttgcatggtt tttagtattt
    19801 tttccactcc ttctttgatg gcatttttat cataaagtct gcaaggctcc atgttgcctt
    19861 gaagagtgta tttgtgtgat agtttatcac gtgctaaatc aagcggggtg ctccaatcaa
    19921 ccccaaaaac atcaaaattg ccatcgattc tatccaaata accgctaatg cctttaggga
    19981 ataaaattac aggtatattt gggtatttgc ttttaataaa atttgaaatt tcaagcatat
    20041 aattaaaaga gaattcaaaa aacttatcat attctaaagc acttgcccag ctatcaaaaa
    20101 tttgtatagc attagcacct gctttaattt gctcttctaa ataaagtttt aaaacttgag
    20161 ttagtttatt tagaatttta tgtaaaagtt ctgggttttg ataaagcatt tttttacact
    20221 ttgcataatt tttacttcca cttccttcta tcatataggt agctatagtc caagggcttc
    20281 cgcaaaatcc tattaaagcc ttgttttgag ataatttttc tcttgtaagc tttaaggcat
    20341 catagacata atttaatttt ttatgtgcat tttgatcgtc aagtttttct aagtcttcta
    20401 gggttgaaat aggattatca aaaataggcc cttctccttt ttcaaaacgt aaattcatac
    20461 ccatttcaag aggaacaact aagatatctg aaaaaatgat tgctgcatct acatctaaaa
    20521 tatcaatagg ctgtaaagaa acttcagaag cttttttata gtctttgcat aaagagagaa
    20581 aatcacccgc ttgttttctt acttccatat attctggcaa atatcttcct gcttgacgca
    20641 tcatccaaat aggggtgtag ggtgtaggtt ttttaaagca agcatcaata aaaatcatta
    20701 ttttcctttg tttttagcaa aattataaca gaatttgata aattaaattg gtcaattttt
    20761 ctatattttc ttcatatgga ggaaataata aattttttca ttttatccag agttatgaga
    20821 aattttacga gaattattgg aattctcgtt tgtgtagttt gagttttgat ttgtatatta
    20881 agcctttgta ttgtttgtgg catttcctgc gtcaattgta gcaaaaagct tatttagcaa
    20941 agtctcctca ttttttttgt attgatcttc tctcattttt tgccaagcat aagatctaaa
    21001 atcttctcta acagcaccaa gatcaatgtc ctcattagta aatttgcttg agcttgtttt
    21061 ttcttcttcc ttttcttctt tgttttttac ttcatttaat gtggcttgaa attcatctgc
    21121 tgaagtattt ttctctttaa cctttgttgt ggtgctaaaa atagcatttg atgttttttg
    21181 agtattatct actaccattt tctcctcctt tatttaactt tacattaaac aaacaagcaa
    21241 tttctattcc aatttatatc ttttttaaac tttttctttg aaatttttta taatttaatt
    21301 tatctttggc aaaaagtaag gcaaaaatca aagcagggct tacaaaaagt gccgaaaata
    21361 aagcattaaa ttctataccc aatcctgcta aaacaatccc acctaaaaaa cttgctaaag
    21421 ctatgcctac attaaaagct gcttcattca cacttactgt gctgtctatg actttataag
    21481 tatggcgttt agctttagca atgctaagca tttttagcgc aggtatagtg gaaaaggcaa
    21541 aaaatcctat caaagctacg ctaaaaatga ttaaaatttt agaatgcatg gtgagaaata
    21601 cgcttaaaaa tactagaact tgtatgctta aaataagacg caaggaaaaa atagcacctt
    21661 ttttatctac tatttttccg ccccataaat tcccacaaat tgcacaaatt ccatataaaa
    21721 gcaagatata agctgtatct tggactttaa aaccgcttat ttctacaagt aatttttgca
    21781 aataagtgta aagaacgaat tgagccccac aactacaaat ggttatagta taagttttta
    21841 acaaattttg atgcgaaaaa gcagggatta gatttttaag actggttgga ctaggatgta
    21901 aatttttggg catcatatgc catactccaa aaaatgctag gcttgtaatg ataaaaataa
    21961 gtaaaaagat aaatttaaag ccaaaataat gtcctataaa agttccaagt ggtactccag
    22021 taactaaggc tacggtaagt cctgtgacca ttatagctag agcacttgat tttttatcat
    22081 taggtactat agcacttaca gctaaggtag caatgacaaa aaacacccca tgctgtgttc
    22141 ctgctacaaa acgtgcaaac gctgtaagat agaaattttg gctaaaaaag ataatgaaat
    22201 ttgctaaagc aaaaattcca agattgatta aaagttgtgt atgtctgtga aaacgactta
    22261 aaggtatagt aataagagga gcacctataa caacacctat agcatataag gttgtaagat
    22321 agcccgcagt ttttgcatct acgctaaaat acgcttcaac atcaaccaaa actcctgcca
    22381 tgacaaattc ggttacaccc atacaaaaag cactaagagc tagtgcaaaa agagcttttt
    22441 tgtaattttg cattttaatt tccttataaa aataaaaacg cattataata aaataaaggg
    22501 ttaatttcct taaaaaaatc aaaatatttt tgttaaaata aaataaaaat tttaaaggta
    22561 aataatgaaa aaattatttt attgctcggt ttaagtttgg tgagtttagg ggctttgagt
    22621 tttgatgagc ttatttataa agatgaggta aaacctagtt ttgattgttc taaggtgaaa
    22681 gatgatggca aaagtgatga tgagcttatg atatgtaatg aaattggcgt gcgtaatgaa
    22741 tttgagaata aaaaacttgc tttagtagat aacatttata gtagtttgta ttaaaatatt
    22801 tcaaaaaaag cagataaaaa gacaaaaaaa gattttaaag ctatttcaaa aaagatgatt
    22861 aaagaaagaa aaatttgtat aaaaaatatg caaaacacaa aagcagggga aaatcctatt
    22921 ttacctttac tcaatgcaag tgattgcatg caagaagctt atgctaaagc tttattagag
    22981 cttacgcaaa gagcaaaaaa agatataaag actaaagaag ttttagagca aatttttaaa
    23041 aataaagttg ataaatatga aaatttactc actcaaagtt taaataccaa caaagatttg
    23101 caagatttta tagacagctt ggctaaagaa gatttgattg attctagggc taaatttaag
    23161 ctttggaatt taaattgatt gcaaatttag ccgcttcaaa ataactttta gtgttgattt
    23221 tagcattttt ataggcctta tcaaaggccg tgccatgatc aacgctaacg cgtatgatgg
    23281 gtaaatttaa actcacattg atgcttttat caaaatacaa ggcctttaaa ggagcaaggg
    23341 caagatcgtg atacatagcc actaaacgat tgcagttttt taaaccagcc ttggtaaaag
    23401 ctgtatcagc tactaaagga tagggtagat aaacgccctt gcctttaaaa tttaaaagca
    23461 attctttttg taaattttca tcttttaagg cttttttgaa aaatttttca tcttttttag
    23521 agtgtaaaaa ggcattgaca aaggctatag ctttttccat gatcttttct tcttctccac
    23581 ctataactcc ataatctcca gcgtgaggat taaaacctaa aagccccatt tttttaaaat
    23641 gcgtttcttt gtaaaaatct tttaaaaaga tacttaaatt tttaaaagtg atttttttac
    23701 tcactttagc taaaggtata tgttcgctaa aaagccctac aaaaagttct ttgcaaccta
    23761 acatcataat ggcatttttt ttaaaaaaat cccttaaagc atcggtgtgt cctttgtatt
    23821 taagtcctgc atcttcccaa gcttttttgt gtataggtag agtaagtaag gcatgggcgt
    23881 gtttttcata gacaaaataa cttgccgcct taaagcttaa aaaaccataa agtccacttt
    23941 ttgcatctat ttctccggct tggatttcaa aattttcatc cactttaaag cctaaaggaa
    24001 ggcaaaaaga gtaaatttca agagaatttt ctttttttat aaaattaaac tcatagtctt
    24061 tgtcatcttt aaaagctacg atttttgcat taaaaagttt taaatttaaa agttttaaag
    24121 ctttattaag taagctttcg tggataaaat aaaaaggtgt gcagattttg cttagttctt
    24181 catgagaacg cactaaaatt tcaagtccta tgctgtttat atcgcctata ctaatggcta
    24241 gttttttcat cttttataag ttctttcatt tctaaaatag cgtttttaag tcctgtaaat
    24301 acagatcttg ctacaatgct ttgtcctata tttagctcac aaatttcttt aatttttact
    24361 atgagtttta catttttgta atttaaacca tgtcctgcgg ctacttttaa gccaagttct
    24421 gtgccttttt tggcacagag ttctaaattt tgcaattctt tttcaaattg agtttgcaag
    24481 gtttttttat cttgaccaag ttcttttaag gcaaaagcag tatgagagat attgctaaaa
    24541 agtgcgttgt gtaaattcgc ataatgtcct gtatgaagct ctataaattg ggcttttaaa
    24601 atttttgatt tttctatatc ttctaaacta ggattgataa aaagtgaaac ttcaatgttt
    24661 gcattttgaa gtttttctat gctttgtttt aatttagcat gatttaaaca aagtccccct
    24721 tctgtagtaa gctcttctct tttttcaggc actaaagtaa cgcggtgggg tttgagttta
    24781 agagctaaat ttaaaatttc atcatttaaa gcacattcta aattgatagg gcttttgcaa
    24841 aattttatga tattttccaa gtcaaaatcc tgagcatgac ggcgatcttc tcttacatgc
    24901 aaagtgattt gatctccgtg tttagctgct ataaaagcag cctctaaaag atcaggatca
    24961 tttaccattc tagcttgtct taacactgcg atatgatcga tatttacacc taaaagcata
    25021 tttttccttt agaacttttt tgctattata ctataaaatc aaacaaggaa agtcatgtta
    25081 ggtatagatc ttggttcaaa tactttaaga gcagtacaaa tggatgaaaa attaaataaa
    25141 ttaaaagaat atgaatttgt tattggggca gcgaaaaatc taaatcaaag tggagaaatt
    25201 tctaaagaag ccatacaaag attaaaaaat gctttgagta ttttagctaa agagcaagat
    25261 ttaagcaaag caagagctgt agcgactgca gcttttagaa aggcaagtaa tacaaatgaa
    25321 atttttgccc atttaaaaga agaatttggg attgatttta agcttataga tgccaaaagt
    25381 gaagctaaga tcagtgtttt aggtatgcaa tcaggtttaa gaaggcttaa aatttgggga
    25441 gagtttgcgt attgtgattt aggaggggct tcttgtgagc tttcttttgg aaaaagtttt
    25501 aaaagttttg attttggtat tattagtttt tatgaaaaaa attgccattc ttattataaa
    25561 tcttgtattt cttacaaaaa attgataaaa aaatatccta aatttatcat caatattaaa
    25621 gataaaaaac ttaaaattca ttttttaatt gcaaatccct atttaaagca tttagctttt
    25681 agggcttttg atgaggtagc tacgattaaa aaggagcttc attctttagg agttaaaacg
    25741 gtggttttaa attccggagt tcctactaca cttagcgcat taaaacaaaa tataagctat
    25801 gaaaagtatg aagtaactag agtaaatggt aaaaaacttt gccataagga ttttttaaat
    25861 tatgctatta aactttttca tatggaagaa aaaaaggcta taaaagaagt aggtatgatg
    25921 agaaaaaatt atttgagtgc aggttgtttg ctgttttatg ctttgtttga taaacataaa
    25981 cttctagtca ttgatgaggg tttaagggag ggagtttgtt tagcaagtat gaaaaatata
    26041 aaattttagt ttttttgaaa ttcgaaaaaa tgaaattttt catcaaaatt aaaaaataaa
    26101 attttagctt gagataaaaa actttcgtaa gttttaatgt ttttattttt tgtgtattcc
    26161 aataaatctt caaaaccaaa atccattaaa gcaagacttt gttttttaaa agctaaaggc
    26221 ttgaaatcat attctttgat gagtttttga agatgagtaa aattaacatt ataagttaga
    26281 tcgcttttgc cgaaaaaatc ttttaacgat acttcaaaag ggctaaaaac ttcgtgtttt
    26341 tgatagattc ttaagctaaa attttgcgca ttgaaagttc catagtcaaa tcccgcaaat
    26401 ataaatctct cgcaagcttg atctaaatct ttaaaaaatt tttcaagctc taagctgagt
    26461 tcgccttttg taagatttaa agctttgcat tttgtgatca aattttcatc catattttta
    26521 aaaataagtt taaaattttc tacaaatgct attttatcat gatttataag ttcgcaggta
    26581 aaactatcaa aaagttcatt gcaaaagaaa aaagcgttct taaaatggca ttctttaaga
    26641 ctatttttgt gagtaaattc cactccttct aaagtctttt tttgtaaatt ttttaatttt
    26701 tcatgtggtt ctatgacgaa aaaagaaatt tgagaaaaaa tttcaggcct taattcaagt
    26761 aaagcggcta aaaaatcacg acttaaatag ccttcattgg cacctatttc tacaagttct
    26821 aaagggggtt gcaaaatttt tttatctatt aaatttaaaa aatgcttggc taaaagtgtg
    26881 ccaaaaagat ttcctacgct aacagcagta aaaaaatccc cattttttcc tatacttaca
    26941 gcatttttat aatagctttc atgtagccaa gcatggaaaa agtcactaaa tttcatcgaa
    27001 aaatagcatt aaatttggat acaaaatcca aaggatcaac ttgtttgcct ccagctaaaa
    27061 ttccaaaatg caaatgcggt ccacttaccc taccactagc tccgctaagt cctataagtt
    27121 cgcctttttt tatcttttgt cccactttaa catcgatttt agaaagatga tagtattgtg
    27181 aataaattcc aaaaccatga tcaacgacta ccgaatttcc tgcgaaataa cgatcttttg
    27241 caatttttac tatgcctgag ttggctgcat aaataggtgt tcctatagcg gctctaaagt
    27301 ccgttccact atgataactt gctacttttt cattaaaagt tcttgctttg ccaaaatcac
    27361 ttgtgataaa agaatttaaa ggtatgttaa aagcaccgtt aaataaagct tttggagtat
    27421 aagaactata aatcgcattg gcttctttta attctttagc gatgcgttct tgtacggttt
    27481 ttggtggaaa aatctttttg ttttcaactt gcaatttttc acttttataa ttaccttcta
    27541 aagtttttat gaaaatttct tcttttttat ctttataaaa tgcgataagt ttggtgtttt
    27601 gtgggggatt tttgtaaggt aaggaaaaaa tagctagaat tttttcttga tttttaggat
    27661 gtgcaaaagt gggaatattt ttatcattat ttttcaaaga taaaaaatct ttcttatcta
    27721 gttccaaaaa taaagcttga cctttgatga gttctaaatt ttgagctcca aaaagccaaa
    27781 gagtaaggct taaaaaaagc cataaggctt tcatagactt aactctttaa gatcggcgat
    27841 ttttaaaaac tccgcataaa tttcataaac caaagcttgg cgattatttt taagtttttc
    27901 atcttcagca ttaatcatca cttgattaaa aaactcatca ataaaaggct taagtgcaaa
    27961 aagattttca agtttttctt gtaaagagtt ggctttagtt ttttcttgaa aagctttgta
    28021 aagtttgctt tctgcttctt gaacaaaaag actttcatca actttatgag gatttttagt
    28081 ggcgatattg gccagtcttt taaaggttgc aaaattttca ttaaaattgt cttttttgct
    28141 aagttctata agagcattta cgctttgatt gatatggata agatctgtat tttgtgagct
    28201 taaaaccgct tttacaaaag aagcattgac cgtataaaaa gtataaagtc tttcaaaaat
    28261 aaaatctttt aaaatttgca tatcaaagct tttataatga cttgaaagtt tttctaataa
    28321 aatttggata tcaaattctt tatttaaatt tagagcgatt ttaatgatcc cattggctgc
    28381 tcttcttaag gcataaggat cctttgttcc gcttggaatt tttcctatgc taaaaagtcc
    28441 tataagggta tcaagcttgt ttgcaagggc tactatgctt gaaaattccg tgcttggaag
    28501 tggagcttgt tcggaattag gaagatattg ttctttgatg gctaagcaaa tttcataatc
    28561 taagcccatt ttttgcgcat aataacttcc cataatgcct tgcaaatcag taaattcata
    28621 aaccatttgt gtggctaagt ctgctttggc gtattttagt gctgtgctga tattttcgat
    28681 tttatcatta tgaagcattt gacataaaat ttcagcaatt ttaatctctc ttaaactttt
    28741 atcttgcatt gtgcctaaac cttcaagata ggtcattttg gcaagttttt caggttttaa
    28801 accattttgt aaatcatttt gataaaaaaa cattgcatcg ctaagtcttg cacgcaaaac
    28861 tctttcattt ccatgtatga tttttgaata atctttacat actgcattgc ttactactat
    28921 aaaatgatta cttaagcctt tatcgttaaa aactgcaaaa taacgttgat tttctctcat
    28981 tgaagtgatg attacttcgc taggaatttc taaaaattct tcttcaaagc ttcctaaaag
    29041 tgcattaggg tattctgtga tagcaactac ttcagctaaa agttcttcat cctctccaat
    29101 ttgtatattt ttttgacttt ctatgagttt aaattgctca agtatttttt cttttctttt
    29161 gattggatca aggataatat agtttttttc tagtagttca aaatattctt ttgcattgtt
    29221 aaaatcttgc aaatcataac ttacacttct gtgaatgaaa gtttttttag cactttttac
    29281 cccataactt tgaaaattta caagttcatc atttaaaatg caagctatag aacggatcgc
    29341 acggatgaat tcaaaagaat ttgcacccca gcgcatactt ttgccaaaac taagactttt
    29401 tagaaatttt tctatcattt ctcctaaaat ttcttgactt tgtaaacctt taatagcttt
    29461 ttgatggtat aaaacttcct tgcctttgat ttctttaaaa gtgagttcat tttcactgat
    29521 ccctgctttt tgtaggaagc tttgccccga aggagttaaa accccatctt tataggcgac
    29581 atttttaggt gctcctataa attcagcaaa gctatcttct tgtttttctg caaaattttc
    29641 atgaaaaaaa actaaacgac gcggagtata ataaaattta aaatcactta ccaagcggta
    29701 ttcttctaaa atatttttcc attttttttc tatattagct aattctttta gcaaaggaat
    29761 agcaggtaat tcttctgtgc caatttctat taataattca ctcataattt actcttttta
    29821 aaatttattt ctaattttaa ctaaaattcc attaaaaaac ttataaatac ttttgcaaaa
    29881 agcctttaag ctcactagcg ttgctaaatt cattttcttt taaatctttt tgataccatt
    29941 tggcatgaaa ataaggcaaa ttagcatttt tagcacattc tttatctttt tgactatccc
    30001 ctataaaaac gcttgtttta tatggagcct cactttttaa aagctctagc atcataggat
    30061 gaggtttggg ttctatgcct aaacttacgc ctaaaatttt atcaaaataa ggaatgattt
    30121 gatgtttttt aagtatgctt gaaagtgagc tttgcggggc gttagtagca atagctaaaa
    30181 aacaattttt gttttttaaa aattctaaaa gttctttcac tccttcaaaa agtaccacgc
    30241 tttgttcata gtgtttgaca aaatattttt catagccttc tttaaaacta gaatgatgga
    30301 aattttctat attataaagt tcttttgccc agtcaatatt gggagtattg atggtttgca
    30361 taatgatttc tcttgaaagt ggggctaggt ttaaatcctg ccttatttca ttaactgcac
    30421 aagaaatggc atttgcacta tcgatcaaag ttccatccat atcaaaaaat acattaatca
    30481 ttcataatcc tttaaataat ttttgtgttt ttcttttttc tcaccttgtt ttttttgctt
    30541 atctaaagca ttggcaagat ttaaaagttc gcttttttct ttggaaaaat ctaaacaagc
    30601 attgacaaaa aattcaagat tttttgcgta agttgagtta agatttaccg cgggattttt
    30661 ttcaaaaaat ttagcatttt ttaacattct ttcttcaaat ttagttttat caaaatcttc
    30721 ttttttaagt gcagatatag cgccattgaa aaatttttca agatttctta ggtattttac
    30781 gcgtaaggct ttttcttcat tttttgtcaa aattcttcct taggtatttt tatgaatgcg
    30841 gcattctagc gcttcttgaa ctaaatttct agcgattact ttttcagagc gaatgatgcg
    30901 tatattttca tctatgctag aaaaaagcat cttttttaaa gttccattta catgaatgat
    30961 ggtgtctata ggttttggat aattagctag cacttgacat aaaatttcaa gtttagcttc
    31021 atttgtaact gtgataatag ctacggcaca ttcttctata ttggcaattt ttaaggtttc
    31081 ttcttgagca gcattggcaa aaacgacatt ttcacctcga ctaactccaa gttctactaa
    31141 atttaaatca ctttctaaaa caagataagg tacgcctgtg tttttgattt tttgtacgac
    31201 ttcttgtcct aagcgtccgt agccaaaaac aacaagatga tttttaagct tgatattgct
    31261 gtcaatattt tgcacagcgt tggtattaag tgctatatct tctacaacat tggtaatttt
    31321 tcttatattg tttaaaataa aaggcgtgat aatcatggtt aaaatagaaa caacaattaa
    31381 aatttgtgaa gttttgatat caagcatatt ttttgcttgt aaaagagaaa aaattgctag
    31441 ggcgaattcg ccaatttgag ctatggcaaa agctgtttta agcgctactc tttttttggt
    31501 gtaaagaaat aaaaagccaa aaactatgcc aaattttaaa gccattacaa gaagggttaa
    31561 aactatgatt aaaaaccaat tttgtgccac tacatcaagt tgaatttgca tgcctacagt
    31621 tatgaaaaaa agccctaaaa gcaaatctct aaatgggatc aagtccgctt ctattttgtg
    31681 tttatatttt gtttctgcta tcaaagcacc tgctataaaa gcacccaaag aataagaaaa
    31741 tccaaaataa tttgctaaaa aacttgctcc aataaccata aataaaacag tactaataaa
    31801 aatttcctga gaagaagtgt ggataatgag tctaaaaatt ctatccacta gatatttacc
    31861 tatgaaaaat aataaagtga ttaaaataag tgctgaaatt aaagtggtaa aaaggagttt
    31921 ttctatgttt tgattgttgg atgaaaaaat atctacaagc aaaagcaaag gaataacggc
    31981 tatatcttga aaaagcaaaa ttcccaatgc ttttctacca tattgctcat tgatatcgcc
    32041 attatcattt aaaattttaa gcaccactgc ggttgaagaa agcgctagtg caaagcctac
    32101 tatagtagcg cttttatctc caagtcctaa aattcctata gcaagtagca taaaaacaaa
    32161 gccacaagta agcatctgca aagagccgtt taaaaaaact tcttgtttca ttgccattaa
    32221 atgcttaaaa gaaaattcaa gccctatggt aaacattaaa aacactatac caaattcggc
    32281 tatatgagtg atttcgcctt tgccacttaa atgataaatt tcagaaatga tttctccagc
    32341 agctatatat ccaatgatag ttggaatttc aaatttttta aatatgacat ttaaaactat
    32401 agctatagca acggtgatta aaaaaatttc taaaaaatta tccattattt tttatttttt
    32461 ctcataaaaa atcaaatcaa agctattttt atgcttaaca acggctttac tagccgcttc
    32521 tttgtcttgt tgtttgctta attctgagcg tagttcatca attaaatttt caaattcgtg
    32581 aagttggttt ttcaatttta agataacatc tactccagca agattgattc ccatgtctct
    32641 tgttaaacgc aatataagtt taatacggtc aatatctctt tgagaataaa gtcttatttt
    32701 gccatcggtt ctacttggct ctatcaatcc ttctctttcg tattgcctta aagtttgtgg
    32761 atgtatgctt aaaactttag ccacaacact gattaaatat acaggttcat cataatgctg
    32821 ttccatattt tattcctttc tttaaggtaa tttttctttt aagagttcta taaatttttc
    32881 atcaagggta tctaaatttg gcaaaacaac atttaaattc aaatacatat ccccataaat
    32941 attacttttt ctattttgca ccccataacc ttttaaacga attttttggt tattttttga
    33001 attaggcgtt atgttaattg tcgcttcttc cttgccttct ttgagtgttt ttatatttat
    33061 ttttccacca aaaagtgcag tttttaaaga aatatcaacc ttttgatata aatcatcatc
    33121 ttctcttgtg taaataggac tttcttctat ttttacaata atgattaaat cgcctctagc
    33181 tccatttctg ctttgttttc ctttagagcg aattcttagt ttctcacctt cttttatacc
    33241 atgtggaatt ttaaatttaa tggtttcgcc ttgaaaatta aaactatgtt ccccgccttt
    33301 aacagctttt tcgaaaggaa tgtgaagctc tagattgctg tctaaaattt cttcttcaaa
    33361 acctccaaat cctccaaaac cactgctaaa gccttttgaa gaaaagccgt taaaaccccc
    33421 tcttgagcgt ccaccaaagc ctcctccaaa gagatctttt aaaatatcgt ccaaatttac
    33481 cccaccagta tttcttgaaa aatcatgaaa actttgtcca ccaaacatag aatcgccgta
    33541 ttggtcatac tgagctcgtt ttttttcgtc acttaaaatt tcataagcag cattaatttc
    33601 tttaaatttt tcttcagcac ctttttcttt gttgatatca ggatgatatt ttctagctag
    33661 gcgacggtaa gcttttttta tttcatctgc actagcgttt ttgctaactc caagagtttc
    33721 gtataaacta ttcatgttat atttccttaa aaatttttac ttgattatta tagaggatta
    33781 aattataaca taaactttag cctaagtcaa tcaagtttta taaattttta tcactcaagg
    33841 ttttatttac aattttgtaa attttcggtt ttatactatg aagacagtaa aatattttac
    33901 gagataattt atctttaaga acaaaaggaa ataaaatgaa aaagattttt ttatcattaa
    33961 gtttagcaag tgctttattt gctgcaagta ttaattttaa cgaatcgact gcaacggcta
    34021 atcgtgtgaa tcctgctgct ggaaatgcag tgctttctta tcatgattct attaaagatg
    34081 caaaaaaatc agtggttaat atttccacct caaaaactat tacaagagca aatcgtccaa
    34141 gccctttgga tgattttttt aatgatcctt attttaaaca attttttgat tttgattttc
    34201 ctcaaagaaa aggaaaaaat gataaagaag tggtgagttc tttgggatca ggggtgatta
    34261 tttcaaaaga tggttatata gtaacaaata atcacgttgt agatgatgct gatacgatta
    34321 cagtgaattt accaggaagc gacatagaat ataaagcaaa acttataggt aaagatccaa
    34381 aaacagattt ggctgttata aaaatagagg ctaataatct ttcagctatt acttttacaa
    34441 attctgatga tttaatggaa ggagatgttg tttttgcact tggaaatcct tttggagttg
    34501 gttttagtgt tacaagtggg ataatatctg ctttaaataa agacaatata ggtttaaatc
    34561 aatatgaaaa ttttatacaa acagatgctt ctatcaatcc aggaaattca ggtggagctt
    34621 tggtggatag tcgcggatat ttagtaggta ttaattcagc tattctttct cgtggtggtg
    34681 gaaataacgg cataggtttt gccatacctt caaatatggt taaagatata gctaaaaaac
    34741 ttattgaaaa aggcaagatt gatagaggat ttttaggtgt gactatttta gctttgcaag
    34801 gtgatactaa aaaagcttac aaaaatcaag aaggagcttt aatcactgat gttcaaaaag
    34861 gttcaagtgc tgatgaagca gggcttaagc gtggagattt agttactaaa gttaataata
    34921 aggttataaa aagtcctatt gatcttaaaa attatatagg aactttagag attggtcaaa
    34981 aaatttcatt aagttacgaa agagatggag aaaataagca agcaagtttt attcttaaag
    35041 gtgaaaaaga aaatcctaaa ggcgtacaaa gcgatttgat tgatggtttg agtttgagaa
    35101 atttagatcc aagacttaag gatcgtttgc aaattccaaa agatgttaat ggtgttttgg
    35161 ttgatagtgt taaagaaaag agcaaaggaa aaaattctgg tttccaagag ggtgatatta
    35221 tcataggtgt tggacaaagt gaaattaaaa atttaaaaga tttagaacaa gctttaaaac
    35281 aagttaataa aaaagaattt accaaagttt gggtatatcg caatggtttt gcgactttgc
    35341 ttgtgcttaa ataaaaataa cggaaggatt ttcctttcgt tataaatttt agtttaaaat
    35401 taaaattaag tttaaaataa aggaaaacta tgacaaatat tcttatgata gaagatgatt
    35461 tagaattagc agaaattaca gctgaatatt tggaaaaatt tgatatgaaa gttgatatag
    35521 ctcatgaacc ttatataggt ctttctaagc ttgcattaaa agaatatcag cttatcattt
    35581 tagacctttc tttgccaggg cttgatgggc ttgaagtgtg tgaagagatt cgtaaaaagt
    35641 atgatacgcc tattattgtt tcaagcgcaa gacatgatat tacagataag gttaatgctt
    35701 tagagcttgg agcagatgat tacctaccaa aaccttataa tccaaaagaa ttacaagcac
    35761 gtattaaaag tcatttaaga cgtatttcaa atacaaaaag cgccatagca aaaagtgtaa
    35821 aagatcttgt ttatgatcaa tataagcata ttattaccat gaaaggacaa gagcttactt
    35881 taactaatgc tgaatttgat attttaagct atttgattaa aaaagagggt ggagtggtaa
    35941 gtcgtgaaga gcttgtttat aattgttctt ctattagtga ggattctagt aataaaagta
    36001 tagatgttat tatcagtaga attcgtcaaa agatgggaga tgatccaaaa actccaaaat
    36061 atattcactc tatacgtgga ataggttata agcttactca atgaataaat cttcgatttt
    36121 ttatactata acttttattt ttatttttgc tggggttagt gttatacttg gctttttgtg
    36181 gcttatagaa tacgatcagc aaaattatac tagagaatta aacacaaaat attctttgat
    36241 agctaatgca aggctcttaa attttgcagg agttatcagt gaaaaagaat ttgaagagca
    36301 gacaaaaaat tataataaaa tggatgagat aacagaagca aagcagatcc gtaaaattct
    36361 ttttagaggt gatgttttag ctagggttga ggttaacaat ggcttaatcg agattatttc
    36421 ttataataga caggtgtatt taaatattat ttatgatgga aaggtttatc tttataagga
    36481 tcaagattat caaacctata ggtattttat tatcaaagct atagctgtag ctgtgatttg
    36541 tattcttgta ttgctttata tttatatatt taaaaaatta aaaccactta aaagacttaa
    36601 aaaacaaatt gataaatttg cccaaggaaa gcttggtgat atagaagatg taagcactgg
    36661 ggtggatgaa atttcacaag taagtgaagc tttttatcaa gctattgttc aaattcgaaa
    36721 gttaaaccaa tctcgtcagt tttttttaag aaatattatg catgaactca aaactcctat
    36781 tactaaaggg cttttaactt tagaaatgat agaagataat aaatataaag agcgcttaaa
    36841 tggggttttt actagacttg aaattttaat taatgaattt gctgctattg agcaaattac
    36901 ttcaggggct gcttttataa atagaaaaaa atacaatatt ttagatgttt tagatgaagc
    36961 caaagaaatt gcaatgcgag atgatagcaa tatacgtatt tttatggaag aaagtttttt
    37021 tgtaaatgtg gattttaaac tttttactac ggcgattaaa aatatgatag ataatggtat
    37081 taaacattct gaagatgggt ttgtgcaaat tgatattata gatgattata tttgttttaa
    37141 aaatcgtggt cctgagctta acaatacttt agaatactat actcaagctt ttactcaagg
    37201 atcaaaacaa aaatcaagtt ttggattagg gctttatatt gtaaatacta ttttagaaac
    37261 acatggaatg aagcttgatt atttatatga agatggggta aatttgtttt attttagaaa
    37321 tttaaaaagt gttattgtta aggagtaaat taattttttt acataaaaaa tgcatttttg
    37381 tgaaaaaacc cttgacaaag ttttttaatt tcactataat cacattttac ttttaaatat
    37441 tccggattag ctcagcggta gagtagtcgg ctgttaaccg attggtcgta ggttcgaatc
    37501 ctacatccgg agccactttt ttaactccat ttttaatatt cataaatgta ttttaatata
    37561 aaaaattaat aagtctttat cacaaaaaaa ttgtgataaa gttttttatt ttgtttgttt
    37621 aagatttttg acaattttat ctattttttt acttgccttt tgataatccc catctttaag
    37681 ttcttctagg gcattaacag caaaagaaaa atcttcaact tcattaagat aagcctctat
    37741 ggcttctttt actatggttg attttggttt agaaagattt ttacttaaat tatccaaacg
    37801 ctccttaagc tctaaaggca ttctaaaaga ataagttttt acattgcgtt tcattttatc
    37861 ctccttaaga atattttttg taaaatttta tagcttgttt acaagtttta caagtaaatt
    37921 tatgaccttg taattctatt ttttgatgaa tgctataagg aacatcgtga attttaccag
    37981 gacaattaca ggtataaaga taaaattgtg gatgctcatt atcttcatct tctgctgctt
    38041 caaagctaat atcgccacca tcatctgtag acaaagaaga acttctccat ttttcaactt
    38101 tcatgtcttc atatagtatg tgttctaaaa gccacttttt agccactata taaagttttt
    38161 ctttaagatc attggttgat ttgatatctt tgattaaatt aatcatggtt tggatgattt
    38221 ctttatgtat ttttcgatgt tcttctaaat ttggatagcc tattagctgc atgtattttt
    38281 cttcatcatt aaagtgatct ttcatataat taaaaaattc agccaaaagt tctttgactt
    38341 catttttact tacagatcta tctgatacaa cttcaacttt tgcagcaagt ttaaaaagct
    38401 ttttatgctg ctcatcaatt ttagcattgt gcacactata gctgttatcc cattttggaa
    38461 gcattttaac tccttaagga aaaatttatt tgtatgaaag gattatagat aaaaataaat
    38521 taaataaaaa tgaaatttta ttaaataatt gataagaatt ttgatacaat gatatatatt
    38581 taagagattt gaagttagaa agatttaaat tatggctgct aaaattttac ttttagaaga
    38641 tgatttgagc ttgagtgaga tcattgaaga gtttttaaac gatgagggat atgaagtatt
    38701 tttatgcgat aatgcgcaag aagctttaga tatggcttat gaaagatatt ttgatctttg
    38761 gattttagat gtaaaagttc ctttaggaga tggattttca ttacttaaag aattaagaaa
    38821 aagcggaaag caaactccag caattttcat gacttcttta aacacaacaa acgatttaaa
    38881 acaaggcttt gacgcaggtt gtgatgatta tataaaaaaa ccttttgaac ttgccgagtt
    38941 atctatcagg gttaaagctt tgcttaaaag agctttttca cataaaaatg aagattttga
    39001 agatttagga gatggattta gatttgaatt tactacacaa attctttacc ataataataa
    39061 agccttgact ttaccgagta aagaaattaa gcttttgtct ttattactta aaaataaaaa
    39121 caacttttta agtacagaga gaatttttga agaactctgg gattatgatg aggagcctag
    39181 tgagctaagt ttaagggctt atgtgaaaaa tttacgtaaa attttaggaa aagaaaaaat
    39241 tataaatcaa agaggcaggg gatattgcta tggctaaaaa agtcattagg caaattttat
    39301 taatctacct aacaactaca ggtatttttt taactatttt ttttgcatta tggtatcaaa
    39361 aattatatga agaattagtt gttttaaagg gtgccacttt gagagaaaat catagaaaca
    39421 ttgttataag catcttaaat tctcgtttta cccctataga tataagtgca aaaaatattg
    39481 ctcaaagcac agcactaaaa tttgctatat ttgatgctaa aaagattgtt tttagtaata
    39541 tagattttga tttaagaaag gcaaagatag agcttaaagg tagaggtatt tgtgataata
    39601 aggttttttt ccttgctcct atgagtgcag atcattattt tttaagacat gctagcaatg
    39661 aagaagtaaa tactaacgat ggtttgcaaa ttttaataca gggtgaagat gttggcaaag
    39721 atcttttttg gattagaacg aaagttttta gttttgctat tatggctttt tgcatattgg
    39781 gtttaatatc ttatatttta gtaaaaattg ctctaaagcc tttggaggat aaaatcagca
    39841 cactaaatcg ttttattaaa gattcaactc atgaactcaa taccccatta agtgttattt
    39901 tgatgagtat agaacaactt gagcatcaaa atttaggaga taatactaaa tttacaagga
    39961 ttaagcttgc tgcaaaaagt ttatctcaag tgtactctga tcttgttttt tataatttcc
    40021 ctaatacctt agaaacagaa aaacaaaaat ttgatttaag aatactactt gaagaaagat
    40081 tggaatattt taaagtattt tttgagcaaa aaaaaattac actaaagctt gatttaaatc
    40141 aagcaaatat ttttgctcct aaaagtcaaa tttctaaatt gattgataat cttataagca
    40201 atgctattaa atacaataaa aaaggtggag taatttctat aattttaaaa accaattttt
    40261 taagtattgc ggatacaggt tgtggaattt caaagtcaaa tttaaatcat atttttgata
    40321 gatatacaag atttaatacc gatcaaggag gatttggtat agggctttct ttggtaaaaa
    40381 aagtttgtga tgataatgat attaagatta tttgcgaatc tgtagaaaat caagggagtg
    40441 tttttaaatt aaattggtaa tcagcaagga aaatccttgc tgataagagg ttagagcaga
    40501 tattacatca ttccgcccat gccacccatt cctcccatac cgctcatatc tggcatagta
    40561 ggtttatctt ctttaatttc actaattgtt gcttctgtgg ttaaaagcat actagctaca
    40621 gaaactgcat tgagtaaagc tactctttct actttaacag gatcgataat tccactttca
    40681 agcatattaa catattcacc ttttgcagca tcaaatcctg tgttttcatc tttagcattt
    40741 tctacgctat ttacaaccac acctgcatca aatcctgcat tttcagcaat ttgtcttaaa
    40801 ggtgctctta aagctctttc aacgatagct gcgccaattg cttcatcacc ctgtaaatca
    40861 agtttgattt tagcttttgc tttgataagc gctgcaccac caccgattac tataccttct
    40921 tcaactgctg ctttagtagc gcttaaagca tcgtcaacgc gatctttttt ctctttcatt
    40981 tcagtttcag ttgctgcacc tactttaata actgcaacac caccacttaa ttttgcaagt
    41041 ctttcttgta atttttctct gtcataatct gaagttgttt cagcaatttg tgctttgatt
    41101 tgattgactc tcgcatcaat atttgctttt tcgcctgcac catttactat ggttgtattg
    41161 tctttatcga tgattacact agaagcttgt ccaagatctt gtatagtcgc actttcaaga
    41221 gttcttccaa gttcttcaga aatcacttct ccacctgtta aaatcgctat atcttcaagc
    41281 atagcttttc ttctatcgcc aaaacctgga gctttcactg ctgaaatatt aagaacaccg
    41341 cgaagtttat ttacaaccaa agttgcaagc gcttcacctt caatatcttc agcgataatt
    41401 aaaagtggtt tgcctgtttt ttgaatttgt tctaaaaccg gtaataaatc ttttaaattt
    41461 gtaatttttt tatcaaaaag caggatataa gggcttgaaa gctctactgt cattttttct
    41521 gcattagtga taaaataagg gcttaaataa cctctgtcaa attgcatacc ttcaactaca
    41581 tttaattcat cattgattga ttttgcctcc tcaacagtga taacaccatc tttgcccact
    41641 ttttccatag catcagcgat taaatttccg attttttcat cagagttggc tgagattgta
    41701 gcaacttgtg caatttcttt tttatctttt acttcgcgag aaagtttttt aagttctgct
    41761 actatagctt cgcaagcttt atccataccg cgttttacct cgataggatt tgcacctgct
    41821 gtgatatttc ttaaaccttc tttgaaaatt gcatgagcta aaaccgttgc agtagttgtt
    41881 ccatcgcctg cttgatcagc tgttttactc gctacttctc ttacgagtga agcacccata
    41941 ttttcaagac tatctttaag ctctacttct ttagcaacac ttacgccatc tttagtaatg
    42001 cttggagcac caaagctttt ttggattaaa acattgcgtc ctcttggccc catagttact
    42061 tttaccgcgt cattaagttt tttaacaccc tcataaagtt tatttcttgc ttcatctgaa
    42121 aaaataattt cttttgccat tttttatcct tattttataa attattttaa aattcctaag
    42181 atatcatcta aatttaaaac taaatattca ttattatcaa gtttaatttc tgttccaccg
    42241 tatttagcaa acacgatttt atcaccattt gcaatatcag tgatttcttt acttactgct
    42301 actacttcac ccattaaagg cttttcttta gcattatctg gtataattat gcctgaggct
    42361 gttgttttag tttcttctac gcgtttgact agaacacgct ttcctaaagg ttgaaaattc
    42421 atttttgtcc atccttaaaa atattgattt tagcactctt taatttagag tgataatatc
    42481 atactataaa aaatgaattt tgtcaatact ttaaattaaa atatttataa aagtttagtt
    42541 ttatagacta aagttatttt ataaaataaa ctaaaggata aaaatgaaaa agatttttta
    42601 tggagttata gcttttgttg ttgtgctttt gattgctatt tataccatac ttttcacaag
    42661 ttttggtaat aatatagtgg caaatatagc gcaaaaaaag atcaaagaaa gtgcgggatt
    42721 agatgtaaat atcacgcatt ttaatttaca tttttcaagc cttgaattgc aagcaaatat
    42781 cgcaaatatg gcagatttta atcttcaggg agctttgagt ccttttaagc ttggatttga
    42841 tcttgactat cttatttctt taaagcaaaa ttatgctaaa aatttaggtt taaatttaaa
    42901 tcaaaacctt tcttttggcg gtaaaattca aggcaaggca agtgatttta ctttagatgg
    42961 aaggggttat ttactaggtt caaatgtact tttaaatgcg agaatgtata attacagccc
    43021 tgtcgcttta aatttagatg cacaaaatct taagatagaa gaaatacttc atcttttatc
    43081 ttatcctagt tatgctaaag gttttttaaa tgctcaggca aaaatttcag cacagaattt
    43141 aaaacctgat ggaaatatta tcataaagct tgatacaagc tatataaact acgaggcgat
    43201 aaaaaaagat ttttctttag acttgccttt aaattctaat cctaaagcag aaattttagc
    43261 caatgttaaa gaagataaga tttatgctgt aagtaaaatt tacaatgatt atcttaactt
    43321 acaaacccaa aaaactcttt atgatatgag taagaatatt ttaagtactg attttaattt
    43381 aaatattcct tctcttgcaa agcttgaaaa acttacaaaa actagattaa atggtagttt
    43441 gggcgtgata ggcgaaacaa gtgttgtaaa taatgcctta tcaagtttaa atgctcaagt
    43501 tatcggactt ggtggagagg taaaggcaag tttgaaaaat aataaaattt ttgcagatat
    43561 taatgaagca agtttggaaa aattattagc tcttgcagga tatggagctt tagtttctgg
    43621 aaatttaaat gctaaacttt taaatgcgga tttggatttt tctaatttcg atcttgaggc
    43681 aaaaataaac aatgcaaaga ttaacaccaa tgagcttaaa aaaattgcta aaataggact
    43741 tccaaataca atttttagtc ttgatgctaa agcaaatgca aaaaatagta atatttctta
    43801 caatgcttta cttgcttcaa atttacttaa tatcaaaaaa cttcaaggaa cttataattt
    43861 aaaaaatagt gagttaaata cagatttaaa tgcttttatt gatgatttgt ctcagtttag
    43921 tgctatagcg ggacaaaaat tacaaggtaa ggcagatctt aatgcaaaag ctcatattat
    43981 aggtactcaa atacaaaatt taaatgcaaa tgcaaatttg gcagatggcg taatcaaagc
    44041 tgattcaaat ggtaaaaaac ttgatttgaa cattgataaa cttgatttat ctaaactttt
    44101 tgttatagca ggtatgccaa attatgccag tggggttgtt aatgcaaaag ttaatttaga
    44161 taatatcgat tttaacaacc ttaatggtaa agcaaattta gaggctaaag gcattttaaa
    44221 tgctgcaact ttaagtaaaa ttttaaataa
//
LOCUS       DAZBIH010000003        38702 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.003, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000003 DAZBIH010000000
VERSION     DAZBIH010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 38702)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38702)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38702
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.003"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            17..688
                     /gene="racR"
                     /locus_tag="ACHFOB_000093"
     CDS             17..688
                     /gene="racR"
                     /locus_tag="ACHFOB_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN5798941.1"
                     /translation="MINVLMIEDDPDFAQLLSEYLAQFNIKITNFENPKSALNVGIQG
                     YDCLILDLTLPGIDGLEVCREIRQKSNIPIIISSARGDLSDKVVGLQIGADDYLPKPY
                     DPKEMYARIMSLIRRTKRVEHTNNENINSAFKIDERRHEITYEDKVLTLTPAEFEILE
                     YLIQQHGYSVSREQLVSRCKNLKDKDSKSLDVIIGRLRVKIGDSSKSPKHIFSVRGIG
                     YKLIG"
     gene            685..1920
                     /gene="racS"
                     /locus_tag="ACHFOB_000094"
     CDS             685..1920
                     /gene="racS"
                     /locus_tag="ACHFOB_000094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsS family sensor histidine kinase"
                     /protein_id="HFN5798942.1"
                     /translation="MTKNYSIHTKLIILFVVTFFLVCVLFIVLLKIEGNTYNEEESLK
                     QENLIKNLLISYENTSGVEIGAYLGNSGFNAIQNPNLVKAIRNNGQSLFKAGGELCTL
                     SSLKYHSNLYFDVQCKDFDGLYEENTSDRVYNLLLIGFFSFSLLVVFMYFSVLKSLEP
                     LKKLRRQVAEVANGEQPDFLDYQEDEVGKIAFEFQKAFKKNQELIQSRQLFLRTIMHE
                     LKTPIGKGRIISEMIKEDRQKERLIAIFLRMDSLINEFAKIENLFSKNYNLHFKPSRF
                     STILEEAKEHLMIDDFNKVVKVDIRYDALINVDMEIFSVILKNLIDNALKYSNNGTCE
                     LFCCKECFTIKNPGKPLAEPIEHYLEAFTREKHNQVKGMGLGLYIVSEVCKLHNFDLI
                     YFYDDGKHCFKIFFGDKEK"
     gene            1920..2492
                     /gene="recR"
                     /locus_tag="ACHFOB_000095"
     CDS             1920..2492
                     /gene="recR"
                     /locus_tag="ACHFOB_000095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombination mediator RecR"
                     /protein_id="HFN5798943.1"
                     /translation="MVKGLEKFNELVESFANLPTIGKKTAIRLAYHLCINNQIDGMKL
                     AHNIENAIRFIKPCEQCGALSENELCEICSDEERNKNILCIVESPKDILTLEESQSYN
                     GLYFVLDELNEEKLEKLKQIILKLNISELIFALTHSINSDATIFFIEDKFKGLNLTFS
                     KIAQGIPSGVNLENVDLISLNKAMNFRTKI"
     gene            complement(2489..3025)
                     /gene="hydD"
                     /locus_tag="ACHFOB_000096"
     CDS             complement(2489..3025)
                     /gene="hydD"
                     /locus_tag="ACHFOB_000096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HyaD/HybD family hydrogenase maturation
                     endopeptidase"
                     /protein_id="HFN5798944.1"
                     /translation="MKFLVLGIGNIMFADEGLGVHLCKQLEKNYKFTHSEFTLDFVDG
                     GTLALQLSYIIARYDRLIVLDCIEAQGASIGDVFSFPYDAMPNKISWSGSAHEIEMLQ
                     TLQYMELAGDLPKTHILACVPKRIEAMSFKLSDELIQGAKIMEKTLLDFLSKEGFTYE
                     KIADFSLQELADISYKNY"
     gene            complement(3022..3714)
                     /gene="cybH"
                     /locus_tag="ACHFOB_000097"
     CDS             complement(3022..3714)
                     /gene="cybH"
                     /locus_tag="ACHFOB_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0022904 - respiratory electron transport
                     chain [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ni/Fe-hydrogenase, b-type cytochrome subunit"
                     /protein_id="HFN5798945.1"
                     /translation="MQNKEEKLQRKAEYEFSIGLRLTHWVRAIAIVILIGTGYYLSYV
                     FQSPISNGEPVNFMQAKYRLVHQAVGFVLIACIIFKVYLFFCDKVSAKERRSVWDIFN
                     IKLWIEQVKFYIFLGKHPHLKGVYNPLQFVTYFFFYLVMLGIILTGLILYTHTYHEGL
                     GGLLYHILRPLEAAMGGLADVRTYHRILMWVIMIFVPVHIYMAIFNAVKGKDGAMDAI
                     ISGYKFVKEEKH"
     gene            complement(3725..5440)
                     /gene="hydB"
                     /locus_tag="ACHFOB_000098"
     CDS             complement(3725..5440)
                     /gene="hydB"
                     /locus_tag="ACHFOB_000098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-dependent hydrogenase large subunit"
                     /protein_id="HFN5798946.1"
                     /translation="MSQKIIVDPITRIEGHLRVEVVVDDNNVVKEAYAGSTLWRGIET
                     IVKGRDPRDAGFMTQRICGVCTFSHYKAGIVAVENALGITPPLNALLTRTLMNAALFL
                     HDHIVHFYQLHGLDWADVVSALSADVKKASDEAFKYTPNPYATGADKLLEVQQRLKTF
                     VDKGNLGPFANAYYGHPTYRLTPEQNLIVLSHYLECLRIQRIIAQCMAIFGAKNPHPQ
                     SLTVGGVTCVMDLLDPARMGEYMVKFQEVQDFVNRAYYPDLVMAGKAYAHEASVLNDI
                     GVNNLYTFKEFQIGRDEWLFESGIIKNGDLSKVYEVEEDKITEEATHSWYADNEPLHP
                     YDGKTNPNYTGLVDGESVDHHGNNVHSKVFDTKGKYSWIKAPRYEGNPMQVGPLANIV
                     VNYAKGNPNVVPVVDEFLKETGLPLNAVFSTLGRTAARCIEAKIVANNALKAFNNLVE
                     NLKVDQSTCAPYVIDNSKEYKGRYMGHVPRGTLSHWCRIKNGVIENWQAVVPSTWNAS
                     PKDANGVGGSYEQCLIGLKIADVKQPLEIIRKIHSYDPCIACAVHVMDTKGNNLSEYK
                     VNVNL"
     gene            complement(5443..6582)
                     /gene="hydA"
                     /locus_tag="ACHFOB_000099"
     CDS             complement(5443..6582)
                     /gene="hydA"
                     /locus_tag="ACHFOB_000099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HFN5798947.1"
                     /translation="MIDYHQIESRLSALEKLPSLKDNDSITKALEKSGFSRRDFMKWA
                     GAMTAFLALPASFTPMVAKAAELADRLPVVWLHMAECTGCSESLLRSDTPTIDSLIFD
                     YISLEYHETVMAAAGWQAEENLESAIQKHKNKYILMVEGGIPMGDTEHFLTIGAHGKT
                     GYELSKIASENALAIFAIGTCSSFGGIQAARPNPSNAQPLSKVTSKTVINVPGCPPSE
                     KNIVGNVLHYLLFGELPALDVYNRPKWAYGLRIHDLCERRGHFDAGEFVHAFGDEGAK
                     QGFCLYKVGCKGPYTFNNCSRERFNQHTSWPIQAGHGCIGCSEPDFWDTMGPFEEPMA
                     SRKFDTVFGLGADSVSDKIGIGVLTLTGVAIAAHAVISSMQKDKE"
     gene            complement(6702..8543)
                     /gene="mnmC"
                     /locus_tag="ACHFOB_000100"
     CDS             complement(6702..8543)
                     /gene="mnmC"
                     /locus_tag="ACHFOB_000100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004808 - tRNA
                     (5-methylaminomethyl-2-thiouridylate)(34)-
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016645 - oxidoreductase activity, acting
                     on the CH-NH group of donors [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA
                     (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase
                     MnmD/FAD-dependent
                     5-carboxymethylaminomethyl-2-thiouridine(34)
                     oxidoreductase MnmC"
                     /protein_id="HFN5798948.1"
                     /translation="MKKAKLIFKDNTPFSLDFDDFYFNSKDGLNESKFVYTHSFEWKN
                     QENFIIAESGFGIGLNFFLTLKRFLQTTPSKRPKKLFYISVEAFYIEKEQLREIYQKL
                     GFYEEFKELLEQFLKFYPKAKEGIYRFYFEDCFLDLVFEDIAVLKELDFKADIWYLDG
                     FSPNKNSQMFDGNLIFEVARLSKKNTQICTFSSASFLQKNLKKYGFRVEKTKGFRKRE
                     MIKAYLENELEFKDKEAYFSRTFSSLKNKKVAIIGAGISSAVLAYELSLRGFKIDVFE
                     KHLELGKGASGNESGILSSLILKPKVNLGEFSELSFIEASRFYRQILDLKFKGVVEFA
                     HNDLMQERFDTQRENVLFKISKNQAFLEEGGVIFPKNLVKNLFEKSKACIYFNHEFQA
                     YKFENECFTLKFKNDIVKSDYAVLIYAMGADTKDFVFYDEMKLSKVRGQVTHLKPFLN
                     TPFPLSSKAYICPVKDDLQVIGASYDRLDTSLESKEEDDKQNIENIAEFIDKNTKLEI
                     IGSKVGFRSYSSDRFMIVGNAYDEVFYKEEYKALLWTKNKEQKLAKMSCNLYFNFAHG
                     SRGFSTSVLAARYLCALINNEPLCLEKKYIHAIHPARFLIRKLKKGL"
     gene            complement(8540..10519)
                     /gene="amiA"
                     /locus_tag="ACHFOB_000101"
     CDS             complement(8540..10519)
                     /gene="amiA"
                     /locus_tag="ACHFOB_000101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HFN5798949.1"
                     /translation="MAKIFVFLVFVFTTLFGAYENELANFDKNFIGSKSEVQVKFHHQ
                     LKSLYIQSVINEDEKTKIEILKRLIISSNTLNLDDKSYANELKESGISEASINALRKA
                     VVKDIKVQNIPQDAEKSTFEPIKTVQKNEKKSSNEQIKNTEKTNSKTSQAPKSSIVSK
                     VKSDDKIYVLKSSKTSQGVEFELNADLDKNQLKSFALDEKGNYRFISDFDGVLEGGKK
                     EFKFDDYRLVISQFNPKTIRIVVYAKEKIPIDISFKEEKLIFSKETTSQKKTEQASKI
                     SEKKQDQKTEIKTKVLETKKQDKKTNNEKENQESLYVLDVDKISNAVVLNLSDDLDEK
                     EIAVFDTKDQKFRYVVSFKGVLEGNRKSFTFGQNAITVTQYNPKTVRVVLSAPKEFKL
                     LKELDNKNLTLGFYTQTTNQNASKKANQSSSKTLNTNYKSGKLVVIDAGHGGKDSGAL
                     SDKKGSLKEKDIVLSTALKLGNELKKRGYKVLYTRSSDKFINLRDRTKYANDKRADLF
                     ISIHANAAPNATKAKSSEGVETFFLSPARSERSKKAAEKENQGDFEEINYFSKQSILN
                     FLNREKIVASNKLAIDVQKNILTQTRKKYKIVDGGVREAPFWVLVGAQMPAILIEIGY
                     ITHPNEGKRIANKAFQDLLVKGIADGVESYFYNNR"
     gene            complement(10519..11610)
                     /locus_tag="ACHFOB_000102"
     CDS             complement(10519..11610)
                     /locus_tag="ACHFOB_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018580 - nitronate monooxygenase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HFN5798950.1"
                     /translation="MNLQPLQIGKHTIKYPIFQGGMGLGISWDRLASAVSLNGGLGII
                     SSVGTGYYEERKYASKELNAKPYGSENFYSRKGLQALINNARKVCGDVPLGCNILCAS
                     NDYARIARDACEVGFNVIVSGAGLPTNLPEFTADFPDVALVPIISSAKALKIICKRWQ
                     SRYNRLPDAVVLEGPKSGGHQGFTYEQCLDPNYQLEKLIAPVVEEVKNWGSFPVIAAG
                     GIWDKKDIENAISLGASGVQMGTRFIGTFECDASEEFKSVLLASKEEDIELIKSPVGY
                     PARGVRTNLLNLVDKRMGPKINCISNCVAPCGRGKEATKVGYCIADRLFDAWSGKKET
                     GLFFTGANGYRLDKLISVKELMEKLVNGE"
     gene            complement(11607..12812)
                     /gene="tyrS"
                     /locus_tag="ACHFOB_000103"
     CDS             complement(11607..12812)
                     /gene="tyrS"
                     /locus_tag="ACHFOB_000103"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004831 - tyrosine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006437 - tyrosyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HFN5798951.1"
                     /translation="MDIKKILAEVKRGCAELIDEERIENLIKNYYEKGENFFIKAGFD
                     PTAPDLHLGHSVVLTKMAFLQKHGAIVQFLIGDFTGQIGDPSGKSATRKKLDKEQVLI
                     NAKTYETQVFKVLDKEKTQIKFNSTWLNELGAAGIVELTSTFSVARMLERDDFTKRFK
                     EQSPISICEFLYPLLQGYDSVALKSDIEMGGTDQKFNLLMGRQLQRVYNIGKEQAVIM
                     MPLLEGLDGVNKMSKSLNNYIGVTEKANDMYAKILSISDELMFRYYELLSQKSLEEIA
                     QIKKDIEQGNLHPKKAKENLALEITEHFHSKEEANNAKSEFDRIHSQNALPSDMAEFE
                     IQGKIWLAKALVECGLESSTSAARRSISANAVSVNSQKVSDEQMHLEQGEYILQIGKR
                     KFAKLKVKE"
     gene            complement(12824..15019)
                     /gene="spoT"
                     /locus_tag="ACHFOB_000104"
     CDS             complement(12824..15019)
                     /gene="spoT"
                     /locus_tag="ACHFOB_000104"
                     /EC_number="2.7.6.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0015970 - guanosine tetraphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HFN5798952.1"
                     /translation="MKPIDEELLLEQLIDNVKNCKDLEAAKALLFEICSHDAILEKAV
                     DYCIFCHEGQFRKSGEPYAVHPILVATLVGFLSENKSNILAALLHDVIEDTNCTEEEL
                     REQFGSEVLKLVLGLTKIIEIREDNLISSKSKKSLTKSALTFRNMLLASIEDVGVLIV
                     KLCDRLHNMLTLDILREDKQKRISEETLVVYAPIAHRLGISSIKNYLEDLSFKYLMPD
                     EYKLIDNYINSNNQEMQLGLNEFISKIELLFLSNGFRQGSFEIQKRIKHSYSIYLKMQ
                     RKGIGIEEVLDLLGVRILVEKVSDCYLALGILHTHFNPLVSRFKDYIALPKQNGYQTI
                     HTTLFDAKSIIEAQIRTFDMHKIAEFGIAAHWKYKEDGSVVAPRLDWLTDISMQSINN
                     LENAEDYNAIELYEYAKDSLYVEDVAVYSPKGEIFTLPRGATVLDFAYEVHTKVGLHA
                     KSAYVNRIKVPLLTELKNGDIVRVVTSNDKFYRCSWIDSVKTGKAKASIREFCKQKIR
                     EINLASSINMLSFIFGVDKNRIETWIEKENLARRIRQVATDSAYLKDIVNGLKKYAKK
                     SYWFDKYEIKEQKIGNFTLYCNHKIANVDFDFCCHPKRGDAVLAFVKGGNAIVHHKLC
                     DRADKMIDNNQDMVFIKWDSNIPKSYKLIFSLENKKGVLAEFLAFLAKMQINLLTINL
                     SSDLNSAVDYFEITIEFPDNINPDSVKDRLKSRCKILDFTSLNDAYKEG"
     gene            complement(15003..15227)
                     /gene="rpoZ"
                     /locus_tag="ACHFOB_000105"
     CDS             complement(15003..15227)
                     /gene="rpoZ"
                     /locus_tag="ACHFOB_000105"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HFN5798953.1"
                     /translation="MDKRIEEVAAKALEKMGNDRYRLSLVVAKRAEQLANGATPLVDF
                     DKNKNKLADIALYEIAENKITLEGLVETNR"
     gene            complement(15238..15957)
                     /gene="pyrH"
                     /locus_tag="ACHFOB_000106"
     CDS             complement(15238..15957)
                     /gene="pyrH"
                     /locus_tag="ACHFOB_000106"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033862 - UMP kinase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0015949 - nucleobase-containing small
                     molecule interconversion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HFN5798954.1"
                     /translation="MQERKRVLVKFSGEALAGENGFGIENSILKFIASEIKELIKNQI
                     EVGIVIGGGNIIRGVSAAKGGLIKRTSGDHMGMLATVINAIAIQEALESSGLEVRVQS
                     AIQMEAFCETYIMRRAQRHLEKGRVVVFAAGTGNPYFTTDTTAILRAVEIDADMVIKA
                     TKVNGVYDKDPKQFDDAVFLNTLSYDEAMQDNIKVMDDTAIALAKDNKLPIVVCNMFE
                     EGNLLKIIQGDTSLCSIVKNN"
     gene            complement(16009..17202)
                     /locus_tag="ACHFOB_000107"
     CDS             complement(16009..17202)
                     /locus_tag="ACHFOB_000107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="murein hydrolase activator EnvC"
                     /protein_id="HFN5798955.1"
                     /translation="MRKNILIFFCFFLFVDISLANAINEKTKSLEENKRIQEQLNKKL
                     EDLASDILNGEKSLKDLSLQIESLNSQTSKLEASAKAQNQELNTLTSQNEDLLKSKSN
                     MEGKLISLMAKDFAYDLPIPQGYIESEESFMAFEILGSLNKVLNEEIFKISKDYEGVS
                     RLIDDKQAQIKKINESLKDYNAQLAKLQSLKQKQISEINKQKTDRAIYAKKLDDLQAQ
                     QEELRKTLNQLKIINDTEDANSNKNDTKIVKNNQKIRQLGSSYQGSSVKRYTGKKTIA
                     PLDSFTVKQKFGNYVDPVYNLKIFNENVVLRSNKSDAVVKNVLDGKIVFAKDTSMLAR
                     VVIVEHDNGIHTIYAHLDKIAPNIKVGKNIKKGAVVGRIKNDLTFEVTQKNFHINPLE
                     LISLN"
     gene            complement(17199..18005)
                     /locus_tag="ACHFOB_000108"
     CDS             complement(17199..18005)
                     /locus_tag="ACHFOB_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5798956.1"
                     /translation="MKFFKTHLSLILPLLFMMFAFEFILITNATLKHYEELVNKDYNI
                     IVVSKTELDQNVVKTKVPFFAGLESLDPKDLIDRLKNDVSEKNLKVLKDSLPKFYTLK
                     LNSLPDQNELNSIKNQLLNIVGVSKVETFSKTHDKIYSLLILMKFVFWLFLFIIILLA
                     FVLFLKQMRIWLYEHTDRIEIMCLFGAPFWFRSFMLYKVVVIDCFIAFVILLAFFTQI
                     FDLSIIQESLKAVDIIFPPINFILHLTLIFLATLFICLLCVNTVMFKVKR"
     gene            complement(17992..18657)
                     /locus_tag="ACHFOB_000109"
     CDS             complement(17992..18657)
                     /locus_tag="ACHFOB_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007049 - cell cycle [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HFN5798957.1"
                     /translation="MPNLIQANKLTLGYDELVIKEASFAFKDDDFVFITGKSGSGKST
                     LLKSFYGDLEPISGKLEVCGSLMNKIGNLELLKLRQRIGIIFQDYKLVQEYSVEKNVM
                     LPLMIKGYSKKVCHDQAAKLLKHVNLTFKADKLPNQLSGGEQQRVAMARALAHNPKLL
                     LCDEPTGNLDEYSSDIIWTLLKSARELLGTCVIVVTHRIPSNLRVDYRRFNIENGKMN
                     EIF"
     gene            complement(18727..19905)
                     /gene="trmB"
                     /locus_tag="ACHFOB_000110"
     CDS             complement(18727..19905)
                     /gene="trmB"
                     /locus_tag="ACHFOB_000110"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008176 - tRNA
                     (guanine(46)-N7)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HFN5798958.1"
                     /translation="MPNFKSKKIKEINLPYSKDDVEFLWLAKNDNVSLIYTKVQEESF
                     FLQIKKAQNGFVIKGDKHTKPSKIGYLQKALKIFKEGFCEDIINEAFGLKNNALIEKT
                     PFIVDNFDELLSKLQGKIYIEIGFGSGRHLLYQAKENPNVLILGVEIYNPALTQVAKL
                     AKVQNVNNILLIQSDARLLLSVLKSKSVEKIFLHFPVPWDKKPHRRVIGKDFCKECAR
                     VLTQNGRFELRTDSFEYFNFTLEQFLTFPAPKFSLRKNENLEISSKYEDRWKKQEKNI
                     YDLWVWNFNQECKNYELNEFNLSSVEFSKEDLKKIEQNFKNITIKKDDFFLHFESIYK
                     QDENLLLKVAFGAFNKPEHCYLHLDKTIDFVFKEPFKIQENIKAINELKEILKVQFKI
                     "
     gene            complement(19905..21140)
                     /locus_tag="ACHFOB_000111"
     CDS             complement(19905..21140)
                     /locus_tag="ACHFOB_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin type III domain-containing protein"
                     /protein_id="HFN5798959.1"
                     /translation="MMKRFRLGFYLSFLTLLLSACSVSQMNSLASSKEPAVNESLPKV
                     ESLKSLSDMSNIAFEWESLYNENIKGFYLYRSSDENPDFKLVGTIKDKFQTHYVDTKL
                     EPGTKYRYMMKSFNEQGQISEDGKVIEVSTAPRLEAVPFVQAVTNLPNRIKLIWRPHP
                     DFRVDSYIIERTKGDDKEFKKIAEVKNRLNAEYIDSDLKPNENSSYRIIAVSFNGIKS
                     EPSQVVSSTSKALPPQVEHLSASTDGSNKIMLTWDAPTYEDFSYYKVYSTSSSFLPFS
                     VLAKTDKNSYEDIVEGAGKSKYYKVTMVDKDGLESPMPKDGVEGKTLGNPLAPSIILA
                     QSTSEGINLEWSDNDTRAVEYEVRRYGGEQNAVFKGIKEKRLKDVKALPGVEYSYEVI
                     AIDSAGLRSEPSSKVKAAQ"
     gene            complement(21085..22053)
                     /locus_tag="ACHFOB_000112"
     CDS             complement(21085..22053)
                     /locus_tag="ACHFOB_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFN5798960.1"
                     /translation="MQTFLVDENSRLDVFLAKKLNQSRNQVALLIEKDCVQVNDKIQD
                     KNSFKLKNGDIISIASLKLCNEIKPQFEVDFDIDVLYEDEDLLVLNKPSNLVVHGASS
                     VKNATLVDWLIEKKYTLSNLGGEIRAGLVHRLDKDTSGAILIAKNNFTHQKLSEQLAD
                     KSMGRIYLALIDLPLKEDKIIVEKFLMRSPSNAIKKIAIDKENKFSKNAKSAFINIVK
                     TENLTLMAAKLFTGRTHQIRAHLASLNRHILGDSLYGYKGKYDCRIMLHAYFLYFIHP
                     KTKEQIFVKAPLMEDFKNIMFKQINLGENDEKISLGFLLEFFNSFA"
     gene            22131..23231
                     /gene="mrdB"
                     /locus_tag="ACHFOB_000113"
     CDS             22131..23231
                     /gene="mrdB"
                     /locus_tag="ACHFOB_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008955 - peptidoglycan
                     glycosyltransferase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HFN5798961.1"
                     /translation="MFRLDRRILTHFDYMQPILFLPIILISFFLIFEANPFLAEKQFV
                     YACVGLFAFMVFFFFPIRKFIWIIPVAYWINIFLLLSVDIFGVEKLGAKRWLEIPFTH
                     FTIQPSEIFKPSFILMLAYLIYQNPPPKNGYKLKQFIKLSFYIILPFLLIAKEPDLGS
                     AMVLLLVGFGVLFIMGVHYKIWLSIVIAISVSSPIIYTHLLKPYQKQRIHDFISEKPS
                     YQVAQSMIAIGNGGLTGKSQDEATQTHFKFLPISTSDFIFAYMIERFGFIGGLTLIIF
                     YILLIFHLLSLNYKLKDDYFARVAINCVALFIFIYAAVNISMTIGFAPVVGIPLPFFS
                     YGGSSFTIFMIFFGILQHLITFRYFWTDIKAK"
     gene            23285..23361
                     /locus_tag="ACHFOB_000114"
     tRNA            23285..23361
                     /locus_tag="ACHFOB_000114"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:23319..23321,aa:Ile,seq:cat)
     gene            complement(23469..23544)
                     /locus_tag="ACHFOB_000115"
     tRNA            complement(23469..23544)
                     /locus_tag="ACHFOB_000115"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(23509..23511),aa:Phe,seq:gaa)
     gene            23685..25028
                     /gene="ktrB"
                     /locus_tag="ACHFOB_000116"
     CDS             23685..25028
                     /gene="ktrB"
                     /locus_tag="ACHFOB_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HFN5798962.1"
                     /translation="MKQFGLDRRTFKILLAGYIIIALFGALLLHSSWAHTTPIDFLDA
                     FFTSTSAVSMTGLVVKNTAVDFTLAGQIIILALVQIGGLGYMGIGLFVYILIRKKVGF
                     SARNLLKESLFYPSMDGLFKFFKKVLLFIFTIELIGAILLTMRFALEMNFKKALWFGI
                     FHSISAFNNSGFTIFEHGLIAYKHDIAINLIITSLIIIGGLGYFVLVELYFFQRKKLQ
                     NLSLHTKMVVVASIFLIFSSTLIIFAFEYSNPQTIGHFSFFDKILSSYFIAINYRTAG
                     FSTLDMGHLHDASLFFGSLFMVIGGAPGGTAGGMKVTTVMVLLLYAYWSIRDGRVRIF
                     GHEIPRETISKAFIIAVGSAVYIVIAVILLSLLESKFDFIALLFETSSAFATVGISVG
                     NGGTLSLCALFSDPSKVIIIIMMLSGRIGVFAFLLSVFKQDKAIHLKFPEGKVNL"
     gene            25039..25689
                     /gene="ktrA"
                     /locus_tag="ACHFOB_000117"
     CDS             25039..25689
                     /gene="ktrA"
                     /locus_tag="ACHFOB_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HFN5798963.1"
                     /translation="MKNLNYGIIGLGKFGSVVADELIAGGHTVIVADKDEEALKSIQN
                     PPSYAYILDSTNISALKEAGFHDVEVVIVSIGENVEKSILTLMALKDIGVKNIIAKAT
                     SNIHGQILSKLGATKVIYPEKESAKRLVKEFLTKDADYEVFDLSANTIRAIKINIDEK
                     LAGNSLKHVAQNMKVISYKKLNSDWEILPDLETTTVYSGDVVILLGTVKELREFEH"
     gene            complement(25686..26357)
                     /locus_tag="ACHFOB_000118"
     CDS             complement(25686..26357)
                     /locus_tag="ACHFOB_000118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HFN5798964.1"
                     /translation="MIFGKIDYINLLPLHIYLKKYPLPNGYKANMEYKKGVPSKLNKD
                     LFYRRIDAAIISSIESARKKYKNLDLGICANKRVLSVLVEKNTSNAKDPSSATSNALA
                     KVLKQDGKVIIGDKALKLYLKDPSKYIDLCAKWHEKTGLPFVFARFSCVQKKALYKQI
                     LKKFPKTKIKIPYYILQNYAKTRDLDIKDVRYYLDEVIYHKISTKEKTALKRFVKACK
                     ALNLA"
     gene            complement(26363..26989)
                     /gene="upp"
                     /locus_tag="ACHFOB_000119"
     CDS             complement(26363..26989)
                     /gene="upp"
                     /locus_tag="ACHFOB_000119"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004845 - uracil phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006223 - uracil salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HFN5798965.1"
                     /translation="MKNIHCINHPLIEHKLGILRAKETKPFQFRMLIDEISSFLLFEA
                     SKDFSLKEIEISTPIQKTTVKKLDEKIMICPILRAALGMLESVFKMIPDASVGFLGFV
                     RNEETLKADFYFQKLPKDAKKRTAIVIDPMFATGGTAIEACNFLKSQGVKKIKFISIL
                     AAPQGLKKFSQMHDDVEVFVACIDEGLNEKGYIIPGLGDAGDRVFNTL"
     gene            complement(26986..28221)
                     /locus_tag="ACHFOB_000120"
     CDS             complement(26986..28221)
                     /locus_tag="ACHFOB_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="malic enzyme-like NAD(P)-binding protein"
                     /protein_id="HFN5798966.1"
                     /translation="MNLKEEALKYHLGGKIDIVPSKPMATSYDLSLAYSPGVAEPCLE
                     IAKDNELAYTYTNKANLVAIVSDGSAVLGLGNIGAQASKPVMEGKACLFKKFANVNAY
                     DIEINVHSIEEIVNFCKALAPTVGGINLEDIAAPKCFEIEAALQDLGIPVMHDDQHGT
                     AIISTAGLMNAMEISGKKFKDIKVVVSGAGAAGIASAKMYRNLGVENIILVDSKGVIS
                     KDRNDLTPQKLEFAVDSKEKTLKEVLKGADVFLGLSAPKILDDEMVLSMAKDPVIFAL
                     ANPIPEVMPEDVARLRKDAIVGTGRSDYPNQINNVLGFPFIFRGALDVRASKITENMK
                     VAAAKALADLAKLPVSDAVKKAYNLSTLEFGRDYVIPKPFDERVKAAVSTAVAAAAVK
                     DGVAKVKNFDEKAYFESLK"
     gene            complement(28223..29614)
                     /gene="gltX"
                     /locus_tag="ACHFOB_000121"
     CDS             complement(28223..29614)
                     /gene="gltX"
                     /locus_tag="ACHFOB_000121"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFN5798967.1"
                     /translation="MHEKLTTRFAPSPTGYLHIGGLRTALYNYLYARKNGGNFLLRIE
                     DTDLKRNSKEATKAIIEAFKWCGLEHDGEVTYQSERFDLYKEYVKKLLDEGKAYYCYM
                     SKEELEELRAKQEAAKERPRYDGRYREFTGTPPQGIEPVVRIKAPQSGEIVFEDGVKG
                     EVRFKAEDIMDDFIIARSDGTPTYNFTVVIDDALMGVSDVIRGDDHLSNTPKQIVLYE
                     ALGFKIPKFFHVAMIHGEDGKKLSKRHGATDVMEYKEMGILPQALLNFLVRLGWSHGD
                     DEVFSLEDLKKLFDPYHINKSASCYNAKKLEWLNAHYIKTLPFEEINRQLKDLGFDLS
                     VYEKAGFLLDLLRERAKTLHDIINGAKSIVNAPQNYDENAVQKFVNENNLELLQAFAN
                     TLKDQKTGKDFEDFTNDFLEKKEAKLKDLAQPIRIALTGSAVSPSIFEVLEFLGVDEC
                     KKRIDNFLKVRGK"
     gene            29679..30494
                     /gene="salC"
                     /locus_tag="ACHFOB_000122"
     CDS             29679..30494
                     /gene="salC"
                     /locus_tag="ACHFOB_000122"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase SalC"
                     /protein_id="HFN5798968.1"
                     /translation="MKKILLSFAFFASLASANTINAIAVVVDKEPITTYDIDQTMKAL
                     KIDRNKALGVLINEKMEISQMKQLGIVVNDLELDDAINKMLAQNKTTLNAFKANLKSK
                     NQSYEQFRTNFKKDLEKRKLYEKIASMAKTDFSDDGAKKFFEQNKDKFTFYTQINANI
                     YLSNNPQTLENIKNTKKTILKPQNASLNTSNADPRLLGLLSQIPVGGFSPVLNGKNGY
                     ELYEVKSKDGTQTPEYEQVKNEVLNAYVSEQRQNFIQDYFDKLRSKINIEYLR"
     gene            complement(30532..31863)
                     /gene="accC"
                     /locus_tag="ACHFOB_000123"
     CDS             complement(30532..31863)
                     /gene="accC"
                     /locus_tag="ACHFOB_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HFN5798969.1"
                     /translation="MEIKSILIANRGEIALRALRTIKEMGKKAICVYSEADKDALYLK
                     YADASICIGKARSSESYLNIPAIITAAEIAEADAIFPGYGFLSENQNFVEICAKHNIK
                     FIGPSVEAMNLMSDKSKAKQVMQRAGVPVIPGSDGALAGAEAAKKLAKEIGYPVILKA
                     AAGGGGRGMRVVENEKDLEKAYWSAESEAMTAFGDGTMYMEKYIQNPRHIEVQVIGDS
                     FGNVIHVGERDCSMQRRHQKLIEESPAILLDEKTRTRLHETAIKAAKAIGYEGAGTFE
                     FLVDKNLDFYFIEMNTRLQVEHCVSEMVSGIDIIEQMIKVAEGYALPSQESIKLNGHS
                     IECRITAEDSKTFLPSPGKITKYIPPAGRNVRMESHCYQDYSVPPYYDSMIGKLVVWA
                     EDRNKAIAKMKVALDELLISGIKTTKDFHLSMMENPDFINNNYDTNYLARH"
     gene            complement(31865..32320)
                     /gene="accB"
                     /locus_tag="ACHFOB_000124"
     CDS             complement(31865..32320)
                     /gene="accB"
                     /locus_tag="ACHFOB_000124"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HFN5798970.1"
                     /translation="MTKEEIKELVNLFAEANISKIKIKEQDGFEIELERDMCCDVPAP
                     VCPPVPAPQPINVSVVNEAQPSQSAKSNKPSINSPMVGTFYQAPSPGAAPFVKVGSTV
                     KKGDTIAIIEAMKIMNEIEAEFDCRIAEILVADGQPVEFGMPLFAVEKL"
     gene            32468..33028
                     /gene="dcd"
                     /locus_tag="ACHFOB_000125"
     CDS             32468..33028
                     /gene="dcd"
                     /locus_tag="ACHFOB_000125"
                     /EC_number="3.5.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008829 - dCTP deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006229 - dUTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dCTP deaminase"
                     /protein_id="HFN5798971.1"
                     /translation="MGLKADNWIRKMALERKMIEPFCEANIGKGVVSYGLSSYGYDIR
                     VGREFKIFTNVNSTVVDPKNFVEENVVDFEGDVCIVPANSFALARTIEYFKMPDDVLA
                     ICLGKSTYARCGIIVNVTPFEPGFEGHITIEISNTTPLPAKIYANEGIAQVLFLQGDE
                     KCDTTYKDKKGKYQAQTGITLPRILK"
     gene            33077..34081
                     /gene="pseB"
                     /locus_tag="ACHFOB_000126"
     CDS             33077..34081
                     /gene="pseB"
                     /locus_tag="ACHFOB_000126"
                     /EC_number="4.2.1.115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (inverting)"
                     /protein_id="HFN5798972.1"
                     /translation="MFNGKNILITGGTGSFGKTYTKVLLENYKPNKIIIYSRDELKQF
                     EMSSIFNSNCMRYFIGDVRDKERLSVAMRDVDFVIHAAAMKHVPVAEYNPMECIKTNI
                     HGAQNVIDACFENGVKKCIALSTDKACNPVNLYGATKLASDKLFVAANNIAGNKQTRF
                     SVTRYGNVVGSRGSVVPFFKKLIAQGSKELPITDTRMTRFWISLEDGVKFVLSNFERM
                     HGGEIFIPKIPSMKITNLAHALAPNLSHKIIGIRAGEKLHEIMISSDDSHLTYEFENY
                     YAISPSIKLVDQESDFSINALGEKGQKVKDGFSYSSDNNPQWASEKELLDIINHTEGF
                     "
     gene            34082..35212
                     /gene="pseC"
                     /locus_tag="ACHFOB_000127"
     CDS             34082..35212
                     /gene="pseC"
                     /locus_tag="ACHFOB_000127"
                     /EC_number="2.6.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine transaminase"
                     /protein_id="HFN5798973.1"
                     /translation="MITYSHQNIDQSDIDALTKALKDEILTGGKKVDEFEEALCEYIG
                     VKHACVLNSATSALHLAYTALGIKEKIVLTTPLTFAATANAALIAGAKVEFIDIKNDG
                     NIDEKKLEARLVKNSTDIGAISVVDFGGNSVEMDEISNLAKKYNIPLIDDASHALGSE
                     YKGKKVGSMADLSIFSFHPVKPITTFEGGAVVSNNKELISKIKLLRSHGIVKKRLWDS
                     DMIELGYNYRLSDVACALGINQLKKLDHNLEKREEITSFYDKEFEKNHYFSTIKIKDY
                     KKSSRHLYPILLFPEFYCQKEELFESLLHAGIGVQVHYKPTYEFSFYKKLLGEIRLQN
                     ADNFYKAELSIPCHQEMNLKDAKFVKDTLFSILEKVKKGYCG"
     gene            35205..36512
                     /locus_tag="ACHFOB_000128"
     CDS             35205..36512
                     /locus_tag="ACHFOB_000128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4910 domain-containing protein"
                     /protein_id="HFN5798974.1"
                     /translation="MDKLDFRSQDFNQTGKAMYELACELFPIPRSITGQGFRASLEIL
                     NKTLGGGILKFHSIKSGTKVFDWIVPDEWNAKEAYIITPEGEKICDFKKHNLHLLNYS
                     EAIDKEIELEELQNHLYSIEEMPDAIPYVTSYYKRRWGFCLTHNERKKLKKGKYKVYI
                     NAKHDENGVLDYADFILPSTQNSKDEILISTYLCHPSMANNELSGPVVAIFLAKWLLS
                     LKKRRYNYRFVIIPETIGSIVYLSKHLEHLKKHVKAGFVLSCLGDDHAYSLIHTPKKN
                     TLSDKVALHTLKNKENFKAFSFLDRGSDERQYNAPLVNLGIVGVCRTRYLEYEQYHTS
                     KDDLNFISEKGLMGGLQSMQEMILNLEINAVYKNTIVCEPNLGKRGLYHTLSTANDIP
                     LACNFLAYCDGENDIIDIANILNMQAYEFKELLEKILEYKLIL"
     gene            complement(36507..37403)
                     /locus_tag="ACHFOB_000129"
     CDS             complement(36507..37403)
                     /locus_tag="ACHFOB_000129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN5798975.1"
                     /translation="MKSNIQQIFDHIEKSNPIHAKYLKKVNLNEEEKVELENLIRFYL
                     NQGFSINKQANAYLLFLNDTLKEIYYFIEHGTYRYSTLKDVEDKIYFNHDYMENYMIG
                     LAISNFIWDTHIAIRRYFIDLMQNNNIFGKYLEIGPGHGNFFLQSLKFGQFSELLGVD
                     ISPTSCEMTKKIVSFNDHKAKQKCQFICMDFLEYDFNEQFDFITIGEVLEHVENPKNF
                     LNKARKILSDDGNIFITVPINGPAVDHIYLFSHPDEVKNMIKNCELEIVKEEYFMANN
                     YSLKKALETRNAIIMVALLKKL"
     gene            37546..38265
                     /locus_tag="ACHFOB_000130"
     CDS             37546..38265
                     /locus_tag="ACHFOB_000130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046353 - aminoglycoside
                     3-N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HFN5798976.1"
                     /translation="MDIGIKAGDMICVHTEIFNLGIPLLTKNEYLKALIECFLEILTN
                     NGTLVMPTFSYSFCKNEIYDKNKSKCTVGLLNNFFRKLPEVTRSNDPIFSFAAYGLKA
                     NLFQVENNSCFGKNSGYDILTRNNAKIVYLGADWAHTFIHYIEEQIGVDYRYFKTFQG
                     YIIDENNQKYEKKINYYVRCLDKPSELNLSTIAKLLEESGSLKKKSFGGTNISAIDTN
                     DFKKIIIQALNTDKYILVRKD"
     gene            38270..38497
                     /locus_tag="ACHFOB_000131"
     CDS             38270..38497
                     /locus_tag="ACHFOB_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN5798977.1"
                     /translation="MEKQFYEILKNILEIEVNEHTNLSMNNCPEWNSLAHIDIIMSLE
                     EEFEIKFDKEKLTELNSQNMLLKEIKKLKNE"
     gene            38490..>38702
                     /locus_tag="ACHFOB_000132"
     CDS             38490..>38702
                     /locus_tag="ACHFOB_000132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MaoC/PaaZ C-terminal domain-containing protein"
                     /protein_id="HFN5798978.1"
                     /translation="MNSISQKNLELFSKLSGDFNPLHLDQEFAKNSYYGDQVIYGIYQ
                     VFLTLENFFKKNQKNIKIQKIKASFIN"
BASE COUNT        12951 a         6854 c         5281 g        13616 t
ORIGIN      
        1 ttacaaggac actagaatga ttaatgtgtt gatgatagaa gatgatcctg actttgcaca
       61 attattatct gaatatttag cgcaatttaa tattaaaatc acaaattttg aaaatcctaa
      121 aagtgcttta aatgtgggta ttcaaggcta tgattgtctg attttagatt taactttacc
      181 tggaattgat ggtcttgaag tttgtagaga aatccgacaa aaaagcaata ttcctattat
      241 catctcatcg gctagaggtg acttaagcga taaagttgtg gggcttcaaa tcggtgctga
      301 tgattatcta ccaaagcctt acgatccaaa agaaatgtat gcaaggatta tgagtcttat
      361 tcgtcgcaca aaaagagttg aacacactaa taatgaaaat attaactctg ctttcaaaat
      421 tgatgaaaga agacatgaga tcacctatga agataaggtt ttaacactta ctcctgctga
      481 atttgaaatt ttagaatacc ttatccaaca acacggatat agtgtttcaa gagaacagct
      541 tgtaagtcgc tgtaaaaatc taaaagataa agattctaaa agccttgatg ttatcatcgg
      601 tcgcttaagg gtaaaaatag gagatagttc aaaatctcca aaacatattt tttctgttag
      661 aggtatagga tataaactga taggatgaca aaaaattatt ctattcatac caaactgatt
      721 attttatttg ttgttacttt tttcttggtt tgtgtgcttt ttatcgttct tttaaaaata
      781 gaagggaata cctataatga agaagaaagt ttaaaacaag aaaatcttat aaaaaattta
      841 ctcatctcct atgaaaacac ttcaggtgtt gaaataggag cttatcttgg aaacagcggt
      901 tttaacgcta tacaaaatcc caatcttgta aaagctataa gaaataatgg acaatcactt
      961 tttaaagcag gcggagagct ttgtactctt tcttctttaa aatatcatag caatctttat
     1021 tttgatgttc aatgtaaaga ttttgatggc ttgtatgaag aaaatactag tgatagggtt
     1081 tataatcttt tattgatagg atttttctct ttttctttgt tggttgtttt tatgtatttt
     1141 tctgtattaa aatccttaga acctttaaaa aaattaagaa gacaagttgc cgaagttgca
     1201 aatggggaac aacctgattt tctagactat caagaagatg aagtaggcaa gatcgccttt
     1261 gaatttcaaa aagctttcaa gaaaaaccaa gaattaatcc aatcaagaca acttttccta
     1321 agaacaatca tgcatgagtt aaaaacccct ataggaaaag ggagaatcat ttctgaaatg
     1381 atcaaagaag acagacaaaa agaaagactt atcgctatat ttttacgcat ggattctttg
     1441 atcaatgaat ttgccaaaat cgaaaattta ttttcaaaaa actacaactt acactttaaa
     1501 cctagtcgtt ttagcactat acttgaagaa gctaaagaac accttatgat agatgatttt
     1561 aataaagttg taaaagtcga tataagatat gacgctttaa tcaatgttga tatggaaatt
     1621 ttctctgtaa ttttaaaaaa tcttatcgat aatgccttaa aatactcaaa caatggcact
     1681 tgtgagcttt tttgttgtaa agaatgtttt accattaaaa atccaggcaa acctttagca
     1741 gaacctatag agcattatct tgaagctttt acaagagaaa aacacaatca agtcaaaggt
     1801 atgggactag gactttatat agtttcagag gtatgtaaac tgcataattt tgatttgatt
     1861 tatttttatg atgatggaaa gcattgcttt aaaattttct ttggagataa agaaaaataa
     1921 tggtaaaagg cctggaaaaa ttcaatgaac ttgttgaaag ttttgcaaat ttacctacca
     1981 taggaaaaaa aaccgccata aggcttgctt atcacctttg cataaataat caaatcgatg
     2041 gtatgaaact cgcacacaat atagaaaatg ctatccgctt tataaaacct tgtgagcaat
     2101 gcggtgcttt aagcgaaaat gagctttgcg aaatttgtag cgatgaagaa agaaataaaa
     2161 acattttatg tatagttgaa agcccaaaag atatactaac actcgaagag agtcaaagtt
     2221 acaatgggct atattttgtt ttagatgagt taaatgaaga aaaacttgaa aaactaaagc
     2281 aaatcatact taagctaaat atctctgagc tcatttttgc attgacacat agcattaatt
     2341 ctgatgcaac tatctttttt atagaggata aatttaaagg cttaaaccta acttttagta
     2401 aaatcgctca aggaattcca agtggtgtaa atttagaaaa tgtggattta atctctttaa
     2461 ataaagctat gaattttaga acaaaaattt agtaattttt ataagaaata tcggctaatt
     2521 cttgcaaaga aaaatccgca atcttttcat aagtaaaacc ttccttgctt aaaaagtcaa
     2581 gtaaagtttt ttccataatt ttagctcctt gtataagctc atctgagagc ttaaaactca
     2641 tcgcttcaat acgctttggc acacaagcta agatatgcgt tttaggcaaa tctcctgcaa
     2701 gttccatgta ttgtaaggtt tgaagcattt ctatttcatg ggcacttcca ctccagctaa
     2761 ttttattagg catagcatca taaggaaagg aaaatacatc tcctatactc gcaccttgcg
     2821 cttctataca gtctaaaacg ataagtctat cgtacctagc aatgatatag ctaagctgca
     2881 aagccaaagt tccaccatca acaaaatcta aagtaaattc agaatgagtg aatttgtagt
     2941 ttttttcaag ttgtttgcaa agatgaacgc ctaagccttc atccgcaaac atgatattac
     3001 ctattccaag gactaagaat ttcaatgctt ttcttctttt acaaatttat atccgctaat
     3061 aatagcatcc atagcaccat ctttaccttt tactgcgtta aaaatcgcca tgtaaatatg
     3121 tactggcaca aaaatcataa ttacccacat caaaattcta tgataagttc ttacatcggc
     3181 caaaccgccc attgcagctt caagcggtct taaaatatga tataaaagcc cacctaagcc
     3241 ctcatggtaa gtatgagtat aaagaataag ccctgtaaga atgataccta acatcacaag
     3301 ataaaagaaa aaataagtta caaattgcaa aggattataa acccctttta aatgcgggtg
     3361 ttttcctaag aaaatgtaaa attttacttg ttctatccat aatttgatat taaagatatc
     3421 ccatacactt ctgcgttctt ttgcacttac cttatcgcag aaaaacaaat atactttaaa
     3481 aataatacaa gcgattaaaa caaaacccac cgcttgatgc actaagcggt attttgcttg
     3541 cataaaattt acgggttcgc cgttactaat aggactttga aacacataag aaagataata
     3601 tcctgtgcca ataagaatca ctatagcaat agctcttacc cagtgcgtta aacgcaaacc
     3661 tatgctaaat tcatattcag cttttctttg caatttttct tctttgtttt gcatgaaagc
     3721 ctccttataa attgacattc actttatatt cacttagatt attgccctta gtatccatta
     3781 catgcaccgc acaagcaata caaggatcat aagagtgaat ttttctaatg atttcaagtg
     3841 gttgttttac atcagcgatt ttaagtccta tcaaacattg ctcataactt ccacctacgc
     3901 catttgcgtc ttttggactt gcattccaag tagaaggcac cacagcttgc caattttcaa
     3961 taacaccatt tttaattcta caccaatggc ttaatgttcc gcgtggcaca tgccccatat
     4021 agcgtccttt gtattcttta gaattatcga tcacataagg agcacaagta ctctggtcta
     4081 cttttaaatt ttcaactaaa ttattaaacg cttttaaagc attatttgca acgatttttg
     4141 cttcaataca acgagcagct gttcttccaa gtgtgctaaa tacagcattt aaaggaagtc
     4201 ctgtttcttt taagaactca tctaccacag gaacaacatt tggattaccc ttagcataat
     4261 ttacaacgat atttgctaaa ggtcctactt gcatagggtt tccttcatag cgtggagctt
     4321 taatccaact atatttaccc ttagtatcaa atactttaga atgaacatta tttccatgat
     4381 gatctacgct ttctccatct acaagtcctg tataatttgg atttgttttg ccatcataag
     4441 gatgtaaagg ttcattgtct gcataccaag aatgagttgc ctcttcagta atcttatctt
     4501 cttctacttc ataaaccttg cttaaatctc catttttgat aataccactt tcaaaaagcc
     4561 attcatctct tccgatttga aattctttaa aggtgtaaag attatttacc cctatatcat
     4621 ttaaaacact tgcttcatgt gcataagctt ttcctgccat cacaagatca ggataatacg
     4681 cacgattaac aaagtcttgt acttcttgga atttaaccat atactcaccc attcttgcag
     4741 gatcaagcaa atccataacg caagttacac caccaacagt taagctttgt ggatgtgggt
     4801 ttttagctcc aaaaatcgcc atacattgag caatgattct ttgaattctt aaacattcta
     4861 gatagtgaga aagaacgatt aaattttgct caggagttaa acgataagtt ggatgaccat
     4921 agtacgcatt agcaaaaggt cctaaatttc ctttatctac aaaagtttta agtctttgtt
     4981 gcacttcaag aagtttatct gcacctgttg cataaggatt tggagtgtat ttaaaagctt
     5041 catcgcttgc ttttttaaca tcagcactta aagcacttac cacatcagcc caatcaagcc
     5101 catgaagttg ataaaaatgc acaatatgat cgtgtaaaaa taaagccgca ttcattaaag
     5161 ttcttgttaa aagcgcattt aaaggcggag taatacctaa agcattttca acagcaacta
     5221 tacctgcttt ataatgtgaa aaagtacaaa ctccacaaat tctttgtgtc ataaaacccg
     5281 catctcttgg atcacgccct tttactatgg tttcaatacc gcgccacaaa gtagagcccg
     5341 cataagcttc ttttaccaca ttgttatcat caacaacaac ttcaactctt aaatgccctt
     5401 caattcttgt aataggatct acaattattt tttgactcat ttttattcct tatctttttg
     5461 catggaggat ataactgcgt gtgctgctat agcaacgcct gtgagtgtaa gcacacctat
     5521 accgatttta tctgaaacac tatctgcacc caagccaaaa acagtatcaa atttacgact
     5581 agccataggc tcttcaaaag gtcccatggt atcccaaaaa tcaggctcag aacaacctat
     5641 acaaccatgt cctgcttgaa taggccaaga agtgtgctgg ttaaatctct ctcttgagca
     5701 gttattaaaa gtataaggcc ctttacaacc tactttataa agacaaaaac cttgttttgc
     5761 cccttcatct ccaaaggcat gcacaaactc acccgcatca aaatgtccgc gtctttcaca
     5821 aagatcatga attcttagac cataagccca ttttggtcta ttatacacat caagtgctgg
     5881 taactcacca aataataaat aatggagcac attacccact atattttttt cactcggagg
     5941 acagcctgga acattgatca cagttttgct tgttactttg cttaaaggct gtgcattact
     6001 aggatttggt cttgcagctt ggattcctcc aaagctagaa caggttccta tagcaaaaat
     6061 tgccaaagca ttttcacttg ctatttttga aagctcatag cctgtttttc catgtgcacc
     6121 tatggttaaa aaatgctctg tatcacccat agggatacca ccttcaacca ttaaaatgta
     6181 tttattttta tgcttttgaa tggcactttc taaattttct tcagcttgcc aacctgctgc
     6241 agccatcact gtttcgtgat attctaaaga aatataatca aaaatcaaac tatcaatcgt
     6301 tggagtatca cttcttaaca aactctcgct acagcctgta cactcagcca tatgaagcca
     6361 cacaacagga agcctatcag caagctcagc agcttttgct accataggag taaaactcgc
     6421 tggcaaagcc aaaaatgcag tcatagcacc tgcccatttc ataaaatccc ttctagaaaa
     6481 acctgacttt tctaatgctt ttgtaatact atcattgtct ttcaaagaag gaagcttttc
     6541 aagagccgat aaacgcgact ctatttgatg ataatcaatc attatatttc ctttataaca
     6601 tgaaatttat tctctataat aataaaataa aggaagttaa aataaagtta aaaacttact
     6661 ctcataagca aatattagta tcactcttaa ttaaagctta atcataagcc ttttttgagt
     6721 ttgcgaatca aaaatcttgc agggtgaata gcgtggatgt attttttttc taaacacaag
     6781 ggttcattat ttatcaatgc acacaaatac cttgccgcta aaacacttgt gctaaaaccc
     6841 cttgatccat gagcaaaatt aaaatacaaa ttacaagaca ttttagctag cttttgctcc
     6901 ttgttttttg tccataataa agctttatat tcttctttat aaaacacttc atcataggca
     6961 tttccaacta tcataaagcg atcactcgaa taagatctaa agcctacctt agaacctatg
     7021 atttctaatt ttgtattttt atctataaat tcggctatat tttctatatt ttgtttatca
     7081 tcttcttctt ttgattctaa acttgtatca agcctatcat aacttgctcc aatcacttgc
     7141 aaatcatctt ttacagggca aatataagcc ttagaagata aaggaaatgg agtatttaaa
     7201 aaaggtttta aatgcgtaac ttgacctctt actttgctta atttcatctc atcataaaaa
     7261 acaaaatctt ttgtatctgc acccatagca taaatcaaaa ccgcataatc acttttaaca
     7321 atatcatttt taaattttaa agtaaaacac tcattttcaa atttataagc ttgaaattca
     7381 tgattaaaat atatacaagc tttacttttt tcaaaaagat ttttaaccaa attttttgga
     7441 aaaatcactc caccctcttc taaaaaagct tgattttttg aaattttaaa caaaacattt
     7501 tctctttgtg tgtcaaatct ttcttgcatc aaatcattat gtgcaaactc caccacaccc
     7561 ttaaatttta aatctaagat ttgtctataa aaacggcttg cttctataaa agaaagctct
     7621 gaaaactccc ctaaatttac cttaggtttt aagattaaag agcttaaaat tccactttca
     7681 tttccacttg cacccttgcc taattctaaa tgtttttcaa aaacatctat tttaaaacct
     7741 cttaaactaa gctcataagc taaaacagcg cttgatatac ccgcaccaat aatagctact
     7801 tttttatttt ttaaagatga aaatgttctt gaaaaatacg cttctttgtc tttaaactca
     7861 agctcatttt ccaaataagc tttaatcatt tctctttttc taaaaccttt ggttttttct
     7921 actctaaagc catatttttt taaatttttt tgtaaaaaac ttgccgaaga aaaggtacaa
     7981 atttgtgtat tttttttaga aagtcttgcc acttcaaaga ttaaatttcc atcaaacatt
     8041 tgcgagtttt tatttggaga aaatccatct aaataccaaa tatcagcttt aaaatccaat
     8101 tcttttaaaa cagctatatc ttcaaaaaca agatctaaaa aacaatcttc aaaataaaaa
     8161 cgataaattc cttctttagc cttaggataa aattttaaaa attgttctaa aagctcttta
     8221 aactcttcat aaaatcctag tttttgataa atttctctta attgttcttt ttcgatataa
     8281 aaagcttcta cgctaatata aaaaagtttt ttaggacgct tagaaggggt agtttgtaaa
     8341 aagcgtttca aagtaagaaa aaaatttaaa cctataccaa aaccactctc tgcgataata
     8401 aaattttctt gatttttcca ttcaaaagaa tgagtataaa caaatttact ttcatttaag
     8461 ccgtctttgg aattaaaata aaaatcatca aaatccaaag aaaaaggagt attatcctta
     8521 aagattagct tagctttttt catcggttgt tataaaaata actctcaact ccatcagcaa
     8581 tacccttaac taataaatct tgaaaagctt tattggcgat tcttttgcct tcatttggat
     8641 gtgtgatata gccaatttca atcaaaattg caggcatttg cgcacctact aaaacccaaa
     8701 aaggtgcttc tcttacaccg ccatctacga ttttatactt tttgcgtgtt tgagtgagta
     8761 tatttttttg tacatcaatg gctagtttat ttgaagcaac gattttttca cgatttaaga
     8821 aatttaaaat actttgtttt gagaaataat taatctcttc aaaatcccct tgattttctt
     8881 tttctgctgc ctttttactt ctttcacttc ttgcaggact taaaaagaaa gtttccacgc
     8941 cttcgctact tttagctttt gtggcatttg gtgctgcatt agcatgtata gaaataaaca
     9001 aatccgctct tttatcattg gcatatttag ttctatcacg aagattgata aatttatccg
     9061 aacttctggt ataaagcact ttataaccgc gttttttaag ttcatttcca agttttaaag
     9121 ccgtgcttaa aactatatct ttttctttta aacttccttt tttatcactt aaggcaccgc
     9181 tatcttttcc accatgcccc gcatcgataa ccacaagctt tcctgatttg taatttgtat
     9241 ttaaagtttt actagaactt tgatttgctt ttttactcgc attttgattt gtagtttgtg
     9301 tataaaaacc taaagtgaga tttttattat ccaactcctt taagagttta aattctttag
     9361 gagcactcaa aaccacacga acagtttttg gattgtattg agtaactgta atcgcatttt
     9421 gtccaaaagt aaagcttttt ctattccctt ctaacacacc cttaaaactt acaacatatc
     9481 ggaatttttg atctttggta tcaaatactg ctatttcttt ttcatctaaa tcatcactta
     9541 aatttaacac cacagcatta gaaattttat ccacatctaa aacatataaa gactcttgat
     9601 tttctttttc gttattggtt tttttatctt gtttttttgt ttctaaaact ttggttttaa
     9661 tttctgtttt ttgatcttgc tttttctctg aaattttact agcttgctca gtcttttttt
     9721 ggctagtagt ttcttttgaa aaaattaatt tttcttcttt aaaagatata tcaataggaa
     9781 ttttttcttt agcataaacc actatgcgta tggttttggg attaaattgt gaaatcacta
     9841 aacgatagtc atcaaattta aactcttttt tacccccttc taaaacccca tcaaaatcac
     9901 taataaaacg atagtttcct ttttcgtcta aagcaaaact ttttaattga ttcttatcca
     9961 aatctgcatt tagttcaaac tctacacctt ggcttgtttt acttgacttt aaaacataaa
    10021 ttttatcatc gctttttact ttagaaacga tactactctt tggtgcttgc gaagttttag
    10081 aatttgtttt ttctgtattt tttatttgtt cgttagatga ttttttttca tttttttgaa
    10141 ctgtttttat aggttcaaaa gttgattttt cagcgtcttg aggaatattt tgaaccttaa
    10201 tatctttaac aacagccttt cttaaagcat taatacttgc ttcacttata ccactttctt
    10261 ttaactcatt agcatatgac ttgtcatcta aatttaaagt atttgaactg atgatcaatc
    10321 tttttaaaat ttcaatttta gttttttcat cttcattaat aacactttgt atataaaggc
    10381 ttttgagctg atgatgaaat tttacttgta cttcactttt agaaccgata aaatttttat
    10441 cgaaatttgc aagttcattt tcataagctc caaaaagagt tgtgaaaaca aatactaaaa
    10501 atacaaaaat tttagccatt attcaccatt aaccaatttt tccataagtt ctttaacact
    10561 gataagctta tctaaacgat atccatttgc acctgtaaag aaaagtcctg tttctttttt
    10621 acctgaccac gcatcaaaaa gcctatctgc tatacaatac cctactttag tcgcctcttt
    10681 tccgcgtcca caaggtgcta cacaattgct tatacaattg atctttggac ccattctttt
    10741 atctaccaaa tttaaaagat tggttctaac cccacgtgca ggatagccca caggagattt
    10801 aataagctct atatcttctt ctttagaagc tagcaaaacg cttttaaact cttcactcgc
    10861 atcacattca aaagttccta tgaaacgcgt tcccatttga acgccactag cccctaaaga
    10921 aatagcgttt tctatatctt ttttatccca aattccaccc gcagcaatca caggaaaaga
    10981 tccccaattt ttaacctctt ctaccacagg agcgattaat ttttctaact gataatttgg
    11041 atctaagcac tgttcataag taaaaccttg atgacctcca ctttttggcc cttctaaaac
    11101 cactgcatca ggcaagcgat tgtaacggct ttgccatctt ttgcaaataa tttttaaagc
    11161 ctttgcagat gaaatgatag gcactaaagc cacatcagga aaatctgcag taaattcagg
    11221 taaatttgtg ggaagtccag cgcctgaaac aatcacatta aaaccaactt cacaagcatc
    11281 gcgtgctatt cttgcataat cattacttgc acataagata ttacacccca aaggtacatc
    11341 gccacaaact tttcttgcat tattaatcaa agcttgcaaa cccttgcgtg agtaaaaatt
    11401 ttcacttcca taaggcttag catttaattc tttacttgca tactttcttt cttcataata
    11461 tcctgttccc acagaagaaa tgatcccaag tccaccattt aaagaaactg cagaagctaa
    11521 tctatcccag cttataccta gtcccattcc cccttgaaaa atgggatatt ttatagtatg
    11581 ttttcctatt tgtaagggtt gtaaattcat tcttttacct ttaattttgc aaattttctt
    11641 ttacctattt gtaagatgta ttctccttgt tctaaatgca tttgctcgtc gctaactttt
    11701 tgagaattta cacttactgc attagcactg atgcttcttc ttgccgcaga agtagaactt
    11761 tccaaaccgc attcaactaa agccttagca agccaaattt ttccttgtat ttcaaactca
    11821 gccatatcac ttggtaaagc attttgagaa tgaatcctat caaattcaga cttagcatta
    11881 ttagcctctt ctttggagtg aaaatgctcc gtaatctcta aagctaaatt ttctttagct
    11941 tttttaggat gtaaattgcc ttgttctata tcttttttta tttgcgcgat ttcttctaga
    12001 cttttttgac ttaaaagttc ataatatcta aacatcaatt cgtcactaat acttaaaatt
    12061 ttagcataca tatcattagc tttttctgta acaccaatgt aattatttaa actcttactc
    12121 attttgttta caccatctaa accttcgagt aaaggcatca taatcacagc ttgttctttt
    12181 cctatgttat aaaccctttg aagctgtctt cccattaaaa gattaaattt ttgatccgtt
    12241 ccgcccattt caatatcgct ttttaaagcc acgctatcat atccttgaag taaaggatat
    12301 aaaaactcac aaatcgaaat agggctttgc tctttaaatc tcttggtaaa atcgtcacgc
    12361 tcaagcattc tagctacact aaaagttgaa gtaagctcta ctatacccgc agctccaagt
    12421 tcattaagcc aagtagaatt aaacttaatc tgtgtttttt ctttatccaa aaccttaaaa
    12481 acctgcgttt cataagtttt agcattgatt aaaacttgct ctttatccag ctttttacgc
    12541 gttgcacttt ttccacttgg atcgccaatt tgtcctgtaa aatctccaat caaaaattgc
    12601 acaatagctc catgtttttg caaaaaagcc atttttgtta aaaccacact atggcctaaa
    12661 tgtaaatcag gtgctgtagg atcaaatcct gcctttataa agaaattttc acccttttca
    12721 taataatttt taattaaatt ttctattctt tcttcatcaa taagctctgc acagccacgc
    12781 ttaacttctg ctaatatttt ttttatatcc ataataaacc tttttaacct tctttataag
    12841 catcatttaa agatgtaaaa tctaaaatct tgcaacgaga ttttaaccta tccttgacac
    12901 tatctggatt gatattatca ggaaattcta ttgtaatctc aaaataatct accgccgaat
    12961 ttaaatcact tgataaatta attgttaata gatttatctg cattttagct aaaaatgcca
    13021 aaaattccgc taaaacacct tttttatttt ccaaagaaaa aatcaattta taagatttag
    13081 ggatattaga atcccatttt ataaatacca tatcttgatt attatctatc attttatcag
    13141 ctctatcgca aagcttatga tggacaatag cgttaccacc tttaacaaaa gctaaaacag
    13201 catcacctct ttttggatgg cagcaaaaat caaaatccac attagcgatt ttatggttgc
    13261 aatatagagt aaaatttcct attttttgtt ctttaatctc atatttatca aaccaatatg
    13321 acttcttggc gtatttttta agaccattaa ctatatcttt caaataagca ctatctgttg
    13381 ctacttgtct aatacgtctg gctaaatttt ctttttctat ccaagtttca attctgtttt
    13441 tatcaactcc aaaaataaaa cttaacatat taatagaact tgctagatta atctctctga
    13501 ttttttgctt acaaaattcc cttatacttg cttttgcttt tcctgtttta acactatcta
    13561 tccaagaaca gcgataaaat ttatcattgc tagtaaccac tcgcacaata tcgccatttt
    13621 taagctcggt taacaaaggt actttaatac gatttacata agcacttttt gcatgaagcc
    13681 ctactttggt atgcacttca taggcaaaat caagaaccgt tgcaccacga ggcaaagtga
    13741 aaatttctcc cttaggagaa taaactgcga catcttcaac ataaagacta tctttagcat
    13801 attcataaag ttcaatagca ttataatctt ctgcattttc aagattgttt atactttgca
    13861 ttgaaatatc tgtaagccaa tcaagacgag gcgcaaccac actgccatct tctttatatt
    13921 tccaatgcgc tgctatacca aattccgcaa ttttatgcat atcaaaagtt cgaatttgtg
    13981 cttctataat acttttagca tcaaaaagtg tggtatgtat ggtttgataa ccattttgtt
    14041 taggcaaggc tatataatcc ttaaaacgcg aaaccaaggg attaaaatgt gtatgtaaaa
    14101 ttcccaaagc taaataacaa tcacttactt tttcaaccaa aattcttacc ccaagcaaat
    14161 caagaacttc ttcaatacca atgccttttc tttgcatttt aagataaata gaatagctat
    14221 gtttaatgcg tttttgaatt tcaaaactac cttgtctaaa gccattgctc aaaaataaaa
    14281 gttcgatttt ggaaataaat tcatttaaac ctaattgcat ttcttgatta ttggaattga
    14341 tataattgtc aataagctta tactcatctg gcataagata tttaaagcta agatcttcta
    14401 aataattttt tatgcttgaa ataccaagtc tatgagctat tggggcatat acaactaaag
    14461 tttcttcgct gattcttttt tgcttatcct ctcttagaat atcaagagta agcatattat
    14521 gcagcctatc gcataacttc acaatcaaaa ccccaacatc ttcaatgctt gctaaaagca
    14581 tatttctgaa agtcaaggct gatttagtta aacttttttt agattttgat gaaatgagat
    14641 tatcttctct aatttctata attttagtaa gtcctaaaac aagttttaaa acctcagaac
    14701 caaactgctc tctaagttct tcttcagtgc agtttgtatc ttcaatcaca tcatgcaata
    14761 aagcagctaa aatattgctt ttattttcac ttaaaaatcc aaccagtgtt gctactaaaa
    14821 taggatgtac cgcataaggc tctccacttt ttctaaactg cccttcatgg caaaatatac
    14881 agtaatctac cgctttttca agaatggcat catggctaca aatttcgaaa agcaaagcct
    14941 tagcagcttc taaatcttta caatttttta cattatcgat taattgttca agcaataatt
    15001 cttcatcgat tggtttcaac taaaccctct aaagtgattt tattttctgc aatttcatat
    15061 aaagctatat ctgcaagttt atttttattt ttatcaaagt ctaccaaagg ggttgctcca
    15121 ttcgccaatt gttccgctct ttttgctacc actaaagaaa ggcgatatct atcattaccc
    15181 attttttcca aagcttttgc cgctacttct tctattcttt tatccataat tttctcctta
    15241 attattttta acgattgaac aaaggctagt atcaccttgt atgattttaa gtaaattacc
    15301 ctcttcaaac atattacaaa ccacaatagg aagtttgtta tctttagcta aagctatagc
    15361 tgtatcatcc atcactttaa tattatcttg catagcctca tcataactta aagtatttaa
    15421 aaatactgca tcatcaaatt gttttggatc tttatcataa actccattaa cttttgtagc
    15481 ttttattacc atatctgcat caatttccac agctcttaaa atagctgttg tatccgtagt
    15541 aaaataaggg tttccagtac ctgcagcaaa aaccacaaca cgaccctttt ctaagtgtct
    15601 ttgtgctctt ctcataatat aagtttcaca aaatgcttcc atctgaatgg cgctttgaac
    15661 cctaacttca agtccagagc tttccaaagc ttcttgtata gcaatagcat tgataaccgt
    15721 agcaagcatt cccatatgat ctccacttgt ccttttaatc aatccgccct tagcagcact
    15781 tactccgcga ataatattac caccgcctat aactatgcct acttctattt gattttttat
    15841 aagttcttta atctctgaag ctatgaattt taaaatagaa ttttctatac caaagccatt
    15901 ttcacctgct aaagcctctc ctgaaaattt tactaaaact ctttttctct cttgcattat
    15961 ttctccttat ttaacttgaa attatatttt aaattccatt aaatttagct aatttaagct
    16021 aatgagttcc aaaggattga tatgaaaatt tttttgagtt acttcaaaag taagatcatt
    16081 ttttattcta cccactacgg cacctttttt aatattctta ccaactttaa tattaggagc
    16141 aatcttatct aaatgtgcgt atattgtatg tatgccatta tcatgttcaa caataacaac
    16201 tcgagctaac atactagtat ctttggcaaa aactattttt ccatctagca catttttaac
    16261 aactgcatca cttttattgc ttcttaaaac tacattctcg ttaaaaattt taagattgta
    16321 aacaggatca acataatttc caaatttttg cttcacagta aaagaatcca atggagctat
    16381 ggtttttttt cctgtgtaac gcttgactga acttccttga tagcttgaac ctaattgtct
    16441 tattttttga ttatttttta ctattttagt atcatttttg tttgaatttg catcttctgt
    16501 atcattaata atttttaatt gatttaatgt ttttctaagc tcttcttgct gagcttgcaa
    16561 atcatcgagt ttttttgcat atatagctcg atctgttttt tgtttattaa tttcgctaat
    16621 ttgtttttgt tttaaacttt gaagcttggc taattgagcg ttgtaatcct taagactttc
    16681 attgattttc ttaatctgag cttgtttatc atcaataagc ctgcttaccc cctcataatc
    16741 tttagaaatt ttaaaaattt cttcatttaa aactttgttt aaacttccta aaatttcaaa
    16801 agccataaaa ctttcttcac tttcaatata gccttgaggg ataggtaaat cataagcaaa
    16861 atctttagcc attaaagata taagcttacc ttccatattt gatttacttt taagcaaatc
    16921 ttcattttgg cttgtaagag tatttaactc ttgattttga gccttagcac ttgcttcaag
    16981 cttagaagtt tgtgaattta agctttcaat ttgcaaactt agatctttca aacttttttc
    17041 accatttaaa atatcgctag ccaaatcttc aagtttttta tttaactgtt cttgtatgcg
    17101 tttattttct tctaaacttt ttgttttttc atttatagca tttgctaaac ttatatcaac
    17161 aaacaaaaaa aaacaaaaaa agataagaat attttttctc atcttttaac cttaaacata
    17221 accgtattta cacacaacaa gcaaataaac aaagtagcta aaaaaattaa agtcaaatgt
    17281 aaaataaaat taataggtgg aaaaataata tctacagcct ttaaactttc ttggataata
    17341 gaaagatcaa aaatttgcgt aaaaaaggca agtaaaataa caaaagcaat aaaacaatca
    17401 atcacaacca ccttataaag cataaaagat ctaaaccaaa acggagctcc aaataaacac
    17461 ataatttcaa tacgatcggt atgttcataa agccaaattc tcatctgttt taaaaacaaa
    17521 acaaaggcaa gtaaaataat gataaacaaa aataaccaaa aaacaaattt catcaaaata
    17581 agtaaagagt atatcttatc atgggttttg gaaaaagttt caaccttgct aacacctaca
    17641 atatttaaaa gttgattttt aatcgaattt agttcatttt gatcgggcaa agaatttaat
    17701 tttaaagtat aaaattttgg tagagaatct tttaaaactt tcaaattctt ttcagaaaca
    17761 tcatttttca aacgatcgat taaatcctta ggatctaaag attcaagtcc agcaaaaaat
    17821 ggtacttttg tttttactac attctgatca agttcagttt tgctgacaac tataatatta
    17881 taatctttat taacaagttc ttcataatgc ttcaaagttg catttgtaat caaaataaat
    17941 tcaaaagcaa acatcataaa aagtaaaggt aaaattaaag ataaatgtgt tttaaaaaat
    18001 ttcattcatt tttccatttt ctatattaaa acgacgataa tccactctta aattactagg
    18061 aattctatgt gttaccacta taacacaagt tcctaaaagc tctctagcag actttaaaag
    18121 agtccatata atatcagaag aatactcgtc caaatttccc gttggctcat cgcaaagcaa
    18181 aagctttgga ttatgagcta aagccctagc catagcgacg cgttgttgct caccaccgct
    18241 aagttgatta ggcaatttat ctgctttaaa agttaaattt acatgcttta aaagcttagc
    18301 agcttgatca tggcatactt ttttgctata acctttaatc attaaaggca acataacatt
    18361 tttttcaaca ctatattctt gtacaagttt ataatcttga aaaataatcc ctattctttg
    18421 acgcaatttt aaaagttcta aatttccaat tttattcatc aaagatccac atacttcaag
    18481 cttaccagaa ataggttcta aatctccata aaaagacttt aaaagcgtac tcttaccact
    18541 cccactttta cccgtaataa aaacaaaatc atcatcctta aaagcaaaac tcgcttcttt
    18601 aataactaat tcatcataac ctaaagtaag tttatttgct tggattaaat taggcatcct
    18661 ttttccttaa tttccctttt taaattttta aattatgctt tatttttgct taattttcaa
    18721 gaaaaattat attttaaact gaacttttaa aatttctttt aattcattta tcgctttaat
    18781 attttcttga attttaaatg gttctttaaa aacaaaatca atcgttttat caagatgtaa
    18841 ataacaatgt tcaggcttat taaaagctcc aaaagcaacc tttaaaagca aattctcatc
    18901 ttgtttatag atgctttcaa aatgcaagaa aaaatcatct ttttttatag taatattttt
    18961 aaaattctgc tctatttttt tcaaatcctc tttagaaaat tcaaccgatg agagattaaa
    19021 ttcatttaac tcatagtttt tacactcttg gttaaaattc cacacccaaa gatcatatat
    19081 atttttttct tgctttttcc atctatcttc atatttgctt gaaatttcta aattttcatt
    19141 ttttctaaga ctaaattttg gagcaggaaa agtcaaaaat tgttctaaag taaaattaaa
    19201 atactcaaaa ctatctgttc taagttcaaa acgaccattt tgggttaaaa ccctagcaca
    19261 ttctttgcag aaatctttcc caataactcg cctatgaggc tttttatccc aaggaacagg
    19321 aaaatgtaga aaaatctttt caactgattt tgattttaat acactcaata acaatctcgc
    19381 atcactttgg attagcaaaa tattatttac attttgcact ttagcaagtt tagctacttg
    19441 agttaaagct gggttgtaaa tttccacccc taaaattaaa acatttggat tttcttttgc
    19501 ttgataaagc aaatgtcttc ctgatccaaa gcctatttct atataaattt taccttgaag
    19561 cttagacaaa agctcatcaa aattatcaac gataaatggt gttttttcaa ttaaagcatt
    19621 gtttttaagt ccaaaagctt cattgataat atcctcacaa aaaccttctt taaagatttt
    19681 taaagccttt tgcaaataac ctattttaga aggttttgta tgtttatcgc ctttaatcac
    19741 aaaaccattt tgtgcttttt taatctgcag aaagaaactc tcttcttgaa cctttgtata
    19801 aataagacta acattatcat tcttagcaag ccaaagaaat tcaacatcat ccttgctata
    19861 aggtagattt atttctttga tctttttgct tttaaaattt ggcactactg agctgcctta
    19921 actttgcttg aaggttctga acgaagccca gccgaatcaa tagcaataac ttcataacta
    19981 tattccaccc ctggtaaagc ttttacatct tttaatcgct tttctttaat gcctttaaaa
    20041 acagcatttt gctccccgcc atagcgtctt acttcatact caacagctct agtatcatta
    20101 tcgctccatt ctaaatttat cccttcgctt gtgctttgag ccaaaataat actaggagcc
    20161 aaagggttac ctaaagtttt accttctaca ccatcttttg gcataggact ttcaagacca
    20221 tctttatcca ccattgttac tttataatac ttgcttttac ctgctccttc tactatatcc
    20281 tcataagaat ttttatcagt ctttgccaaa acactaaaag gaaggaagct tgagcttgta
    20341 gaataaactt tataataaga aaaatcttca tatgtaggag catcccaagt taacatgatt
    20401 ttattagaac catctgtgct agcacttaaa tgctcaactt gaggaggcaa agccttgctt
    20461 gtagaactta caacttgact tggttcactc tttatcccat taaaactcac agcaatgatt
    20521 ctatagcttg aattttcatt aggttttaaa tcactatcga tgtattcagc gtttaaacga
    20581 ttttttactt ctgcaatttt tttaaattct ttatcatcac ctttagttct ttcaataata
    20641 taagaatcaa ctctaaaatc aggatgcgga cgccaaataa gtttaatacg attaggcaaa
    20701 ttagtcacag cttgaacaaa aggaacagct tcaagtcttg gagctgtgct cacttctata
    20761 accttgccat cttctgaaat ttgtccttgc tcattaaagc ttttcatcat ataacgatac
    20821 ttagtaccag gctctaattt agtatctaca taatgagttt gaaacttatc tttaatagtg
    20881 cctacaagtt taaaatcagg attttcatca ctagaacgat ataaataaaa tcctttaata
    20941 ttttcattat ataaagactc ccattcaaaa gcaatattac tcatatcgct aagacttttt
    21001 aaactttcaa cctttggcaa gctttcattt acagcaggct ctttacttga agctagcgaa
    21061 ttcatttgcg aaacactaca agcgctaagc aaaagagtta aaaaactcaa gtaaaaaccc
    21121 aagcgaaatc ttttcatcat tctctcctaa attaatttgt ttaaacataa tatttttaaa
    21181 atcttccatc aaaggtgctt taacaaaaat ttgctctttg gtttttggat ggataaaata
    21241 caaaaaataa gcatgcaaca ttatcctaca atcatactta cccttataac catacaaact
    21301 atcacctaaa atatggcgat ttaaactagc caaatgcgct ctaatttgat gagttcttcc
    21361 tgtaaaaagc ttagcagcca tcaaagttaa attttcagtt tttactatat ttataaaagc
    21421 tgattttgcg tttttactga atttattttc cttatctatg gctatttttt taatagcatt
    21481 agaaggcgaa cgcattaaaa atttttctac tataatttta tcttctttta gtggcaaatc
    21541 aattaacgca aggtaaattc ttcccatgct tttatctgca agctgttcgc ttaatttttg
    21601 atgggtgaaa ttatttttcg ctatcagtat agctccgctt gtatctttat ctaatctatg
    21661 gacaagacca gctcttatct ctcctcctaa atttgataaa gtatattttt tttctattaa
    21721 ccaatccacc aaagtggcat ttttaacgct acttgctcca tgaacgacta aatttgaagg
    21781 tttatttaaa acaagcaagt cttcatcttc gtataacaca tcaatatcaa aatccacttc
    21841 aaactgaggt tttatctcat tgcaaagctt taaacttgca atagaaataa tatcaccatt
    21901 tttaagctta aatgaatttt tatcttgaat tttatcatta acctgtacac aatctttttc
    21961 tataagtaaa gcaacttgat tgcgactttg gtttaatttt ttagccaaaa atacatcaag
    22021 ccttgaattt tcatctacta aaaaagtttg cattttttcc ttagaagttt tgataaattt
    22081 aaaattttag tttataatta tagctttata ttaccaactg aaggcaaatt ttgtttagat
    22141 tagatagaag aattttaact cattttgact atatgcaacc cattttattt ttacccataa
    22201 ttcttatttc atttttctta atctttgaag ctaatccttt tttagcagaa aaacagtttg
    22261 tttatgcctg tgtgggattg tttgctttta tggttttttt cttctttccc ataaggaaat
    22321 ttatttggat tattcctgtt gcttattgga ttaatatttt tttattgcta agcgtagata
    22381 tttttggggt tgaaaaatta ggtgctaaaa gatggcttga aattcctttt actcacttta
    22441 ctatacaacc ttctgaaatt tttaaaccta gttttatttt aatgcttgcc tatcttattt
    22501 atcaaaatcc tcctccaaaa aatggataca agcttaaaca attcatcaaa cttagctttt
    22561 acatcatctt gccttttttg ctaattgcaa aagaacctga tttaggaagt gctatggttt
    22621 tactacttgt tggttttgga gtgcttttta tcatgggagt tcattataaa atttggttaa
    22681 gtattgttat agctataagt gttagctctc ctattattta tacacatctt ttaaaaccct
    22741 accaaaagca aagaattcat gattttattt cagaaaaacc aagttatcaa gtagcccaat
    22801 caatgatagc tattggaaat ggtggtttaa ccggaaaatc tcaagatgaa gctacgcaaa
    22861 ctcattttaa atttttacct atttcaacta gtgattttat tttcgcttac atgatagaaa
    22921 gatttggatt tattggggga ttgacattaa ttatatttta tattttactt atttttcatc
    22981 tacttagttt aaattataaa cttaaagatg attattttgc tagagttgct attaattgtg
    23041 ttgcattatt tatttttatt tatgcggcag taaatatttc aatgactata ggttttgcac
    23101 cagtagttgg gatccctttg ccttttttta gttatggtgg aagttctttt actattttta
    23161 tgattttttt tggaatttta cagcatttaa tcacttttag atatttttgg acggatataa
    23221 aggctaaata aaatattttt aagcattaat aagatataat tttatctttt aattcaactt
    23281 aggcggattt atagctcagt tggttagagc aaccggctca taaccggttg gtcgcaggtt
    23341 cgagtcctgc taaatccacc attctacata taagctatag actctttctt taaaaaataa
    23401 tttttagttc tttaaatatt tcaatcttat ataaaaaagt atatgatgtg attttctgaa
    23461 agataaagtg gtggttagag gcagaatcga actgccgaca cgcagatttt cagtctgctg
    23521 ctctaccgac tgagctatcc aaccacaatg atttgataaa ttaaaaatgt aattgtatct
    23581 ttttttcttt aatttaagtt taaatacaaa aataaaattt tatttccctt aaagttttaa
    23641 taagatagaa tacccgcttt agatcattat caaatggaaa ttttttgaaa caatttggac
    23701 tagatagacg aacttttaaa attttactag ctggttatat tattattgca ttgtttgggg
    23761 ctttattgct acattcaagc tgggcacata caactcctat tgattttttg gatgcctttt
    23821 ttacaagcac atctgctgtt agtatgacag gattagtagt taagaacact gcggttgatt
    23881 ttaccttagc agggcaaatt attatcttag ctttggtaca aattggaggc ttgggatata
    23941 tgggtatagg tttatttgtt tatatactca tacgcaaaaa agttggtttt agtgcaagaa
    24001 atttactaaa agagtcttta ttttatccat caatggatgg tttatttaaa ttttttaaaa
    24061 aagttttgct gttcattttt actatagaat tgataggtgc tatacttctc accatgcgtt
    24121 ttgctcttga aatgaatttt aagaaagctt tatggtttgg aatttttcat tctattagtg
    24181 cttttaataa ttctggattt actatatttg aacatggact tatagcttat aaacatgata
    24241 tagcaattaa tcttattatc acttctttga ttattattgg agggcttgga tattttgttt
    24301 tggttgaatt atactttttt caaagaaaaa aattgcaaaa tttaagccta catacaaaaa
    24361 tggttgttgt tgcaagtatt tttcttattt tctcttcaac gcttattatt tttgcttttg
    24421 aatactcaaa tcctcaaact ataggacatt tttcattttt tgataaaatt ttaagctcat
    24481 attttatcgc tattaattac cgcacagcag gatttagcac cttagatatg ggacatttgc
    24541 atgatgcaag cttatttttt ggatcattgt ttatggttat tggtggtgca ccaggtggaa
    24601 cagctggggg tatgaaagta acaactgtaa tggttttatt gctctatgct tattggagta
    24661 tccgcgatgg aagagttaga atttttggac atgaaattcc aagagaaact atatctaaag
    24721 cttttattat agctgtaggt tcagctgttt atatagtaat agctgttatt ttgctttcct
    24781 tgctagagtc aaaatttgat tttatagcct tgctttttga aacttcttcg gcttttgcaa
    24841 ccgtaggaat ttcagtggga aatggtggaa ctttatcttt atgtgcttta tttagtgatc
    24901 ctagtaaggt gattatcatc attatgatgc taagtggcag gataggtgtt tttgcttttt
    24961 tactctcggt attcaaacaa gacaaagcta ttcatttaaa attccctgaa ggaaaggtta
    25021 atttataaag gtaaaatcgt gaaaaatctt aattatggaa tcataggact tggaaaattt
    25081 ggctcagttg tagcagatga actcattgct ggaggtcaca ctgttatcgt tgcagataaa
    25141 gatgaggaag ctttaaaaag catacaaaat cctccaagct atgcttatat tttagattct
    25201 acaaatattt cagccctaaa agaagcaggc tttcatgatg ttgaagttgt tattgttagc
    25261 ataggagaaa atgttgaaaa atcaatcctt actcttatgg cgcttaaaga tataggtgtt
    25321 aaaaatatca ttgctaaagc aacctctaat atccatggtc aaattctttc taagttaggc
    25381 gcaacaaagg ttatttatcc tgaaaaagaa agcgctaaaa gactagtaaa agaattttta
    25441 accaaagatg ctgattatga agtttttgat ctttcagcaa atactatacg agctattaag
    25501 atcaatatag atgaaaaatt agcaggaaat tctttaaaac atgtagcaca aaatatgaaa
    25561 gtaatttctt ataaaaaatt aaatagcgac tgggaaatac tacctgattt agaaaccacg
    25621 acagtttata gtggagatgt tgtaatactc cttggaacag ttaaagagct tagagaattt
    25681 gaacactaag caagatttaa agccttgcaa gcctttacaa aacgctttaa ggctgttttt
    25741 tctttggtag aaattttatg atatataact tcatctaaat aatatctaac atcttttata
    25801 tctaaatctc ttgttttggc ataattttgc agtatataat aaggaatttt aatctttgtt
    25861 tttggaaatt ttttcaaaat ttgtttatat aaagcttttt tttgcacaca agaaaatcta
    25921 gcaaaaacaa aaggcaatcc tgttttttcg tgccattttg cacataaatc gatatattta
    25981 gaaggatctt ttagataaag ctttaaagcc ttatcaccta taattacttt tccatcttgt
    26041 tttaatactt tagctaaagc gtttgaagtt gctgaacttg gatctttggc atttgatgta
    26101 tttttttcta ctaaaacact taaaactctt ttattagcac aaatacccaa atctaaattt
    26161 ttatattttt ttctagcact ttctatgctt gaaatgatag ctgcatcaat tcttctataa
    26221 aataaatctt tatttagctt acttggaact ccttttttat actccatatt tgctttataa
    26281 ccattaggca agggatattt cttaagatat atatgtaaag gtaaaagatt aatataatca
    26341 atttttccaa aaatcatctc ttttaaagag tgttaaacac tctatctcct gcatctccaa
    26401 gccctgggat aatataacct ttttcattta aaccttcatc aatgcaagcc acaaaaactt
    26461 ctacatcatc atgcatttgg ctaaattttt tcaaaccttg tggagcagca agtatggata
    26521 taaattttat ttttttaact ccttggcttt ttaaaaaatt acaagcctct atagcagtcc
    26581 cacctgtagc aaacatagga tctatgacaa tagcggtgcg tttttttgca tctttgggaa
    26641 gtttttgaaa ataaaaatcc gcctttaaag tttcttcatt tctcacaaac cccaaaaacc
    26701 caacacttgc atcaggaatc atcttaaaaa cactttcaag cattcctaat gcagctctta
    26761 aaataggaca aatcataatt ttttcatcaa gtttttttac tgtagttttt tgtataggtg
    26821 ttgaaatttc aatttctttt aaagaaaaat ctttactcgc ttcaaaaagc aaaaaagatg
    26881 aaatttcatc gattaacata cgaaattgaa agggctttgt ctctttagcc cttaaaattc
    26941 ctaatttatg ttcgatcaat ggatgattga tacaatgaat atttttcatt ttaagctttc
    27001 aaaataagct ttctcatcaa aatttttcac cttagctaca ccatctttta ccgcagctgc
    27061 tgctacagct gtacttactg cagcttttac tctttcatca aaaggttttg gtataacata
    27121 atctcttcca aattctaaag tgcttaaatt ataagctttt ttaaccgcat cgcttacagg
    27181 aagttttgca agatctgcta atgctttagc agccgctact ttcatatttt cagtgatttt
    27241 acttgcacgc acatctaaag ccccacggaa aataaaagga aaacctaaaa cattattgat
    27301 ttgatttgga taatcacttc ttcctgttcc tacaatcgca tcttttctaa gtctagccac
    27361 atcttcaggc atcacttcag ggataggatt tgccaaagca aaaatcacag gatcttttgc
    27421 catgcttaaa accatttcat catcaagaat ttttggtgca ctaagtccta ggaaaacatc
    27481 agctcctttt aaaacttctt ttaaagtctt ttccttagaa tcaacagcaa attcaagttt
    27541 ttgaggagtt aaatcatttc tatctttaga aatcactcct ttactatcta ctaaaataat
    27601 attttcaacc cctaaatttc tatacatctt agcacttgct atacctgcgg cacctgcgcc
    27661 acttacaacc accttaatgt ctttaaattt tttaccactt atctccatag cattcataag
    27721 ccctgcagtt gaaataatag ctgttccgtg ctgatcatca tgcattacag gaattcctaa
    27781 atcttgcaaa gctgcttcga tttcaaaaca ttttggagca gctatatctt ctaaatttat
    27841 cccgcccaca gtcggagcca aagccttgca aaaatttaca atctcttcta tactatgaac
    27901 attaatttct atatcataag catttacatt tgcaaatttt ttaaacaaac aagccttacc
    27961 ttccataaca ggttttgaag cctgtgctcc tatgtttcca agtcctaaaa cagcagaacc
    28021 atcgctaact atagctacca aattagcttt atttgtataa gtataagcaa gctcattatc
    28081 tttagcgatt tcaaggcaag gttctgcaac tcctgggcta tacgccaaag atagatcata
    28141 acttgtagcc attggcttac ttggcacaat atcaattttc ccacctaaat ggtattttaa
    28201 agcttcttct tttaaattca ttttattttc ctctaacttt taaaaaattg tctattcttt
    28261 ttttacactc atcaacccct aaaaattcta atacttcaaa aatactagga cttaccgcac
    28321 tccctgttaa agctatgcgt ataggctgag ccaaatcttt taactttgct tctttttttt
    28381 ctaaaaaatc atttgtaaaa tcttcaaaat ctttacctgt tttttgatct ttaagtgtat
    28441 tggcaaatgc ttggagcaat tctaaattat tttcgttaac aaatttttgc actgcatttt
    28501 catcataatt ttgcggtgca ttaactatgc tttttgcacc attgataata tcatgcaagg
    28561 tttttgcacg ctctcttaat aaatcaagta aaaatcctgc cttttcataa acagataaat
    28621 caaagccaag atctttaagc tgacggttaa tctcttcaaa aggcaaagtt ttaatataat
    28681 gagcattcaa ccattcaagc tttttagcat tataacaaga tgcgctttta ttgatatgat
    28741 aaggatcaaa aagttttttc aaatcttcta gtgaaaaaac ctcgtcatcg ccatgactcc
    28801 aacctaaacg cacaagaaaa ttaagcaaag cttgaggtaa aattcccatt tctttgtatt
    28861 ccataacatc agttgcccca tgtctttttg aaagcttttt accatcttct ccatgtatca
    28921 tagccacatg aaaaaattta ggaattttaa aacccaatgc ttcataaagc acaatttgtt
    28981 taggagtatt tgaaagatga tcatccccac gaatcacatc gcttaccccc attaaagcat
    29041 cgtcaataac aacagtaaaa ttataagttg gggttccatc acttcttgca atgataaaat
    29101 catccattat atcttctgct ttaaatctca cctcgccttt aaccccatct tcaaaaacaa
    29161 tctcgccact ttgaggcgct ttaatacgca caacaggttc tataccctga ggtggcgtgc
    29221 ctgtaaattc tctatatctt ccatcatatc ttgggcgctc tttggcggct tcttgcttgg
    29281 cacgcaattc ttctaattct tctttactca tataacaata atacgcttta ccttcatcta
    29341 aaagcttttt aacatattct ttataaagat caaaacgctc tgattggtaa gttacttctc
    29401 catcatgttc taaaccacac catttaaaag cttcgataat tgctttagta gcttctttgg
    29461 aatttctttt taaatccgta tcttcaatgc gaagtaaaaa atttccacca ttttttctag
    29521 cgtataaata attataaaga gctgttctaa gtccacctat gtgcaaatac cctgttgggc
    29581 ttggagcaaa acgcgttgta agtttttcgt gcattttttg ccttttctta aatttttatt
    29641 gatataatgc gatatttata cttaaataaa ggtttgaaat gaaaaaaatt ttattaagtt
    29701 ttgcattttt tgcaagtttg gctagtgcaa ataccattaa tgctatagct gtagttgtag
    29761 acaaagagcc tatcacaact tatgatatag atcaaactat gaaagcactt aaaattgata
    29821 gaaataaagc tttaggcgta ctcatcaatg aaaaaatgga aatttcacaa atgaaacaac
    29881 tgggtattgt agtcaatgat ctagagcttg atgatgctat aaataaaatg cttgctcaaa
    29941 acaaaaccac tttaaatgct ttcaaagcaa atttaaaatc caaaaatcaa agctatgaac
    30001 aatttcgtac aaattttaaa aaagatttag aaaaaagaaa gctttatgaa aaaatcgcaa
    30061 gtatggcaaa aactgacttt agtgatgatg gagcaaaaaa atttttcgaa caaaataaag
    30121 ataaattcac tttttataca caaattaatg caaatattta tctatcaaac aatcctcaaa
    30181 ctttagaaaa tatcaaaaat acaaaaaaaa caatccttaa accacaaaat gcatctttaa
    30241 acacaagcaa tgccgatcca agacttttag gacttttatc gcaaattcct gttggaggct
    30301 tttcccctgt tttaaatgga aaaaatggct atgaactcta tgaagttaaa agcaaagatg
    30361 ggacacaaac tcctgaatac gaacaagtta aaaatgaagt tttaaacgct tacgtaagtg
    30421 aacaaagaca aaatttcata caggattatt ttgataaact ccgctctaaa atcaatatag
    30481 aatatttaag ataaaaatta caattaaaat ttcccttata atagggaaat tttaatgtct
    30541 tgcaagataa tttgtatcgt aattattatt aataaaatca ggattttcca tcatggaaag
    30601 atgaaaatct ttagtcgttt ttatcccact tataagcaac tcatctaaag ctactttcat
    30661 ctttgcaata gctttattac gatcttctgc ccaaactaca agtttgccta tcatagaatc
    30721 ataataagga ggcacgctat agtcttgata acaatgactt tccattctta cattgcgtcc
    30781 tgcgggtgga atgtatttag taatcttacc tggacttggc aagaaggttt tagaatcttc
    30841 agctgtgatt ctacattcta tagaatgccc attaagctta atactttctt gagatggtaa
    30901 ggcataacct tctgctactt taatcatttg ttctatgata tcaatcccac ttaccatttc
    30961 acttacacag tgttcaactt gcaaacgcgt attcatttct ataaaataaa agtctaaatt
    31021 tttatctact aaaaactcaa aagttcccgc accttcatat cctatagctt tagctgcctt
    31081 aatagcagtt tcatgaagcc tagtgcgtgt tttttcatct agtaaaattg caggggattc
    31141 ttctataagt ttttgatggc gtctttgcat agaacaatct ctttcgccca catgaatcac
    31201 attaccaaaa ctatctccta taacctgcac ttctatatgg cgtggatttt gtatgtattt
    31261 ttccatatac atagtaccat caccaaaagc tgtcatagcc tcactttcag ctgaccagta
    31321 cgctttttca agatcttttt cattttcaac cacacgcata ccacgaccgc caccacctgc
    31381 agctgctttt aaaatcacag gatagcctat ttctttagca agttttttag ccgcttcagc
    31441 tcctgccaaa gccccatcgc ttcctgggat cacaggtacg cctgctcttt gcataacttg
    31501 ttttgctttt gatttatcac tcattaaatt catagcttct acagaaggac ctataaattt
    31561 gatgttatgt ttagcacaaa tttcaacaaa attttgattt tcgcttaaaa atccatatcc
    31621 tggaaaaatc gcatctgctt cagcaatttc agctgctgtg ataatagctg ggatatttaa
    31681 ataactttca gaacttcttg ctttgcctat gcaaatgctt gcatcagcgt attttaaata
    31741 caaagcatct ttatctgctt cagaatacac acaaattgct tttttaccca tttctttaat
    31801 cgttcttaaa gcacgcagtg ctatttctcc acgattagca attaatatgc ttttaatttc
    31861 cattttataa tttctccacc gcaaataaag gcattccaaa ttctacaggc tgaccatcag
    31921 caactaaaat ttcagcgatc ctacaatcaa attctgcttc aatttcattc atgattttca
    31981 tcgcttcgat aatagctata gtatcgcctt ttttaactgt actacctact tttacaaaag
    32041 gtgctgcacc tgggcttgga gcttgataga aagttcctac catagggctg tttatacttg
    32101 gtttgttcga ttttgcgctt tgactaggtt gagcttcatt tacaacgctt acattgatag
    32161 gttgtggagc tggaactgga ggacaaacag gagctggaac atcgcagcac atatctcttt
    32221 caagttctat ttcaaaacca tcttgttctt tgatcttaat tttactaata tttgcttcag
    32281 caaaaaggtt tactaactct ttaatttctt cttttgtcat aaaattctcc tacaaaattt
    32341 aagaacttaa tcttgtatta tataaaaaaa cttgaaattt aactttaaaa aagaaaaaaa
    32401 tcataaaaaa tatagatttt ttaggttata atccttataa aaaattacta atattaaaag
    32461 gttaaaaatg ggcttaaaag cggataattg gataagaaaa atggcattag aacgcaagat
    32521 gatcgaacca ttttgcgaag caaatatagg aaaaggtgtg gtaagctatg ggctttcaag
    32581 ctatggttat gatatacgcg tagggcgtga gtttaaaatt tttaccaatg ttaattcaac
    32641 tgtagtggat ccaaaaaatt tcgtagaaga aaatgtagta gattttgaag gtgatgtatg
    32701 tatagttcct gcaaattctt ttgccctagc tagaactata gagtatttta aaatgcctga
    32761 tgatgtttta gctatttgtc ttggcaaaag cacttatgca agatgtggta tcatcgtcaa
    32821 tgttactcct tttgagccag gttttgaagg acatatcact atagaaattt caaatactac
    32881 gcctttacct gcaaaaattt atgccaatga aggcatagcg caagtgttgt ttttacaagg
    32941 cgatgaaaaa tgcgacacca cttataaaga taaaaaaggc aagtatcaag ctcaaacggg
    33001 cataaccttg ccaagaattt taaaatagga acacttgttg ctttaatttt aaaaaactta
    33061 agcaaaggaa ggcaaaatgt ttaatggaaa aaatatctta attactggtg gtacaggctc
    33121 ttttggaaaa acctatacta aggttttatt agaaaattat aaacctaata aaatcatcat
    33181 ttattctcgt gatgagctga agcaatttga aatgtcaagc atttttaatt ctaattgcat
    33241 gcgttatttt ataggggatg taagagataa agaacgctta agcgttgcta tgcgtgatgt
    33301 ggattttgtt atacatgctg ctgcgatgaa acacgttcct gttgctgaat ataatcctat
    33361 ggaatgtatc aaaaccaata tccacggtgc ccaaaatgta attgatgctt gttttgaaaa
    33421 tggggtaaaa aaatgtattg ctctaagtac ggataaagct tgcaatcctg taaatttata
    33481 tggcgctact aaacttgcaa gcgataaact ttttgtcgct gcaaacaata tagcaggcaa
    33541 taaacaaacg cgatttagcg ttacaagata tggaaatgta gtaggctcaa gaggctcggt
    33601 ggtccctttt tttaaaaagc ttatcgcaca aggctctaaa gagcttccta tcaccgatac
    33661 gagaatgaca cgtttttgga tcagccttga agatggagta aaatttgtat tgagtaattt
    33721 tgaaagaatg cacgggggag aaatttttat ccctaaaatt ccttcgatga aaatcacgaa
    33781 tctagctcac gctttagctc ctaatttaag ccataaaatc ataggcataa gagcaggaga
    33841 aaaacttcat gaaattatga tttcaagtga tgatagtcat ttaacctatg aatttgaaaa
    33901 ctattacgct ataagtccta gcatcaagct tgtggatcaa gagagtgatt ttagcatcaa
    33961 tgccttgggt gaaaaagggc aaaaagtaaa agatggattt tcttatagct cggataacaa
    34021 tccgcaatgg gcaagtgaaa aagaactttt agatattatt aatcatactg agggttttta
    34081 aatgattact tattctcatc aaaatattga tcaaagcgat atagatgcgc ttacaaaagc
    34141 tttaaaagat gaaattttaa cagggggtaa aaaggtagat gaatttgaag aagcactttg
    34201 cgaatacata ggtgttaagc acgcttgtgt gttaaattcg gctacttctg cccttcatct
    34261 tgcctataca gcactaggca tcaaagaaaa aatcgtttta accactcctt taaccttcgc
    34321 tgctacggct aatgcggcct taatagctgg agctaaggta gagtttatcg acattaaaaa
    34381 tgatggcaat atagatgaga aaaagctcga agcaaggctt gtaaaaaata gcaccgatat
    34441 aggagctatt agcgtggtgg attttggagg aaatagtgtt gaaatggatg agatttcaaa
    34501 tcttgctaaa aaatacaata tccctttaat cgatgatgca agccatgctt taggtagcga
    34561 gtataagggt aaaaaagtgg gttctatggc ggatttaagt attttttctt ttcatcctgt
    34621 taagcctatt accacttttg aggggggtgc tgtagtaagc aataataaag aattaatctc
    34681 caaaataaaa cttttaagaa gccatggtat cgttaaaaaa aggctttggg atagcgatat
    34741 gatagaactt ggctataatt accgcttaag tgatgttgct tgtgctttag ggataaacca
    34801 gcttaaaaaa ctcgatcaca atcttgaaaa acgagaagaa atcacaagtt tttacgataa
    34861 agaatttgaa aaaaatcatt atttttccac gataaaaatc aaagactata aaaaaagctc
    34921 aaggcattta taccctatct tgctttttcc tgaattttat tgtcaaaaag aagaactttt
    34981 tgaaagcttg cttcatgcag gaattggcgt acaggtacat tataaaccaa cttatgagtt
    35041 tagtttttat aaaaaactct taggagaaat cagactccaa aatgcagata atttttacaa
    35101 agccgagctt agcatacctt gtcatcaaga aatgaatcta aaagatgcaa aatttgtaaa
    35161 agatacttta tttagcattc ttgaaaaagt taaaaaggga tattgtggat aagctagact
    35221 ttagaagtca agattttaac caaactggaa aggctatgta tgaactagct tgtgaacttt
    35281 ttcctatccc taggagtatc acagggcaag gttttagagc tagcttagaa attttaaata
    35341 aaactctggg ggggggtata ctcaaatttc actctataaa aagtggcaca aaggtttttg
    35401 actggatagt ccctgatgaa tggaacgcta aagaagccta tatcatcact ccagaaggag
    35461 aaaaaatttg tgattttaaa aagcataatt tacaccttct aaattatagc gaagctatcg
    35521 ataaagaaat cgaacttgaa gaacttcaaa atcatcttta ctccatagaa gaaatgcccg
    35581 atgctattcc ttatgtaacg agttattata aaaggcgttg gggattttgt ctcacgcata
    35641 atgaaagaaa aaaactcaaa aaaggcaaat acaaagtcta tatcaatgcg aaacatgatg
    35701 aaaatggggt tttggattat gctgatttta tcctacctag tacgcaaaat tcaaaagatg
    35761 aaattttaat ttcaacctat ctttgtcatc cttccatggc aaataatgag cttagtggtc
    35821 ctgtggtggc tattttccta gcaaaatggc ttttaagttt aaaaaaaaga aggtataatt
    35881 accgctttgt catcattcct gaaaccatag gctctatagt ctatcttagc aaacatttag
    35941 agcatttaaa aaaacatgtt aaagcaggct ttgtgctttc ttgcttaggc gatgatcatg
    36001 cttactcact catacacaca cccaaaaaaa acactctaag cgataaagtt gccttgcata
    36061 cacttaaaaa taaagaaaat ttcaaagctt ttagtttttt agatcgtgga agcgatgaaa
    36121 gacaatacaa tgctccgctt gtaaatcttg gcattgtagg agtatgtcgc acaagatacc
    36181 tagaatacga acaataccac accagcaaag atgatctcaa ttttatctct gaaaaaggtt
    36241 taatgggtgg acttcaaagc atgcaagaaa tgattttaaa tctagaaatc aacgccgtat
    36301 ataaaaacac catagtatgc gagcccaatc ttggcaaaag aggactatat cataccctta
    36361 gcactgccaa tgacattcct ttagcttgta attttctagc ttactgtgat ggggaaaatg
    36421 atatcatcga tatagccaat atcttaaata tgcaagctta tgaatttaaa gaacttttgg
    36481 aaaaaatttt agaatataaa cttattttat aattttttta ataaagctac cataatgatt
    36541 gcatttcttg tttctaaggc ttttttcaat gaataattat ttgccataaa atattcttct
    36601 tttacaatct ccaactcgca atttttgatc atatttttaa cctcatcagg atgagaaaaa
    36661 agatagatat gatcaacagc cggaccattt ataggtacgg taataaaaat atttccatca
    36721 tctgataaaa ttttgcgagc cttatttaaa aaattctttg gattttccac atgttctaaa
    36781 acctctccta ttgtaataaa atcaaattgc tcattaaaat catattcaag aaaatccata
    36841 caaataaatt ggcatttttg ttttgcttta tgatcattaa aactaactat tttttttgtc
    36901 atttcacaac ttgttggaga aatatcaact cctaatagtt cactaaattg accaaatttt
    36961 aacgattgta agaaaaaatt tccatgccct ggtccaattt caagatattt gccaaaaata
    37021 ttattattct gcattagatc aataaaatat cttctaattg caatatgcgt atcccatata
    37081 aaatttgata tcgcaagccc tatcatataa ttttccatat aatcatgatt aaaataaatt
    37141 ttatcttcaa catcttttaa tgttgaatat ctataagttc catgttcaat aaaataataa
    37201 atttctttta aagtatcatt cagaaataat aaataagcat tagcttgttt atttatacta
    37261 aaaccttgat ttaaataaaa acgaatcaaa ttttcaagct ctactttctc ttcttcattt
    37321 aaatttacct tttttaaata tttcgcatga ataggatttg atttttcaat atgatcaaat
    37381 atttgttgta tgttggattt cataagttaa aattaccttt tattttgtta taatattacc
    37441 tgataaaatg aaattatatc aaaaaattaa ggatcaaaca tcaacaaaaa actaatagag
    37501 cataattcaa atattttaac caaagaagat tttaaaaact gtcttatgga tataggaata
    37561 aaagccgggg atatgatttg tgttcatacg gaaattttta acttaggcat acctttattg
    37621 acaaaaaatg aatatctaaa agctttgata gaatgttttt tagaaattct aacaaacaat
    37681 ggcaccttgg ttatgccaac attttcttat agtttttgca aaaatgaaat ttatgataaa
    37741 aataaatcta aatgcaccgt aggattatta aataattttt ttcgtaaact acctgaagtt
    37801 acccggagta atgatcctat tttttctttt gcggcatacg gactcaaagc caacttattt
    37861 caagtagaaa ataattcttg ctttggaaaa aattctggtt acgatattct tacaagaaat
    37921 aatgcaaaaa tagtctacct aggtgccgac tgggcacaca cctttattca ctacattgaa
    37981 gaacaaattg gagttgatta tcgctatttc aaaacatttc aaggatatat aatagatgaa
    38041 aataatcaaa aatacgaaaa aaaaataaat tactatgtaa gatgcttaga caaaccctct
    38101 gaactaaatc tttcaaccat tgctaaactt ttagaagaaa gcggctctct taaaaagaag
    38161 tcatttggtg gaacaaatat ttcagcaata gatacaaatg attttaaaaa aattatcata
    38221 caagctttaa atacagataa atatatttta gtaagaaagg attaaaaaaa tggaaaagca
    38281 attttatgaa attttaaaaa atatactaga aattgaagtt aacgaacata caaatttaag
    38341 tatgaataat tgtcccgaat ggaattcttt ggctcatatt gatatcatta tgagcctaga
    38401 agaagaattt gaaatcaaat ttgacaaaga aaaacttaca gaattaaact cacaaaatat
    38461 gcttttaaaa gaaattaaaa agttaaaaaa tgaatagtat ttctcaaaaa aatttagaac
    38521 ttttttcaaa attaagcggt gatttcaacc ctttgcattt ggatcaagaa tttgccaaaa
    38581 attcttatta tggcgatcaa gttatctatg gaatttatca agtttttcta acactggaaa
    38641 acttttttaa aaaaaatcaa aaaaatatta aaattcaaaa aatcaaagcc agtttcatta
    38701 at
//
LOCUS       DAZBIH010000004        38540 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.004, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000004 DAZBIH010000000
VERSION     DAZBIH010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 38540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 38540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..38540
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.004"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            3..1058
                     /gene="hemW"
                     /locus_tag="ACHFOB_000133"
     CDS             3..1058
                     /gene="hemW"
                     /locus_tag="ACHFOB_000133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051989 - coproporphyrinogen dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM family heme chaperone HemW"
                     /protein_id="HFN5798979.1"
                     /translation="MHIPFCESKCNYCAFTSLKKNDYEKAYFQALKEDIVFQLKQFNI
                     QSNQIKTLFIGGGTPSCVDAYNYEDIFKILYPLLDKNVEISCEANPNSATLNWLKNMK
                     NLGVNRISFGAQSFHPKKLHFLGRIHNQEMIIKALENANKVGFKNINLDLIYDTKLDN
                     KKMLEFELLHLKQIKALITHLSAYNLTIESNTAFAKKEHFKKNAPNLMKFFIKQLLEL
                     NFFQYEISNFSKTKAQICKHNLAYWQGKNYLACGLSAVGFYENKRFYTAKNLKNYIEN
                     PTFRSIEQLSSKDLNLEHLFLGLRSIVGIDETKLNQWQKDKINILLKEKKLFYKNKRY
                     FNPNFLISDELALYLSS"
     gene            1117..1524
                     /gene="tatB"
                     /locus_tag="ACHFOB_000134"
     CDS             1117..1524
                     /gene="tatB"
                     /locus_tag="ACHFOB_000134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008320 - protein transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase protein
                     TatB"
                     /protein_id="HFN5798980.1"
                     /translation="MSFGEIIVILVVAILVLGPDKLPEAIVQIAKILKAVKRNIDDAK
                     SSIEKEIRINDLKEEAKKYKDEFSSTNENIRKKLSFEEFDDLKRDILDKTKVDLTFDS
                     RDDNTKNNLSGQNLNTEEKPNLSKLETQDKTEK"
     gene            1525..2262
                     /gene="tatC"
                     /locus_tag="ACHFOB_000135"
     CDS             1525..2262
                     /gene="tatC"
                     /locus_tag="ACHFOB_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HFN5798981.1"
                     /translation="MFEELRPHLIELRKRLFISVACIVVMFIVCFALRSYILDILKAP
                     LIAVLPEVAKHVNVIEVQEALFTAMKVSFFAAFIFSLPVIFWQFWKFVAPGLYDNEKR
                     LVVPFVSFASIMFALGACFCYFVVVPLAFKFLINFGLNEDFNPVITIGTYVDFFTKVV
                     VAFGLAFEMPVIAFFFAKIGLIDDSFLKRHFRIAVLVIFVFSAFMTPPDVLSQFLMAG
                     PLCGLYGLSILIVQKVNPAPKDKESDE"
     gene            2255..3283
                     /gene="queA"
                     /locus_tag="ACHFOB_000136"
     CDS             2255..3283
                     /gene="queA"
                     /locus_tag="ACHFOB_000136"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HFN5798982.1"
                     /translation="MNKDLLLSSYDYTLANELIANYPANPKEDARLLVFDRKNKEIFH
                     TTFKNLKDFLPDCAIFFNDTKVIKARIYGNKASGGKIELFLHQPFLNSHNPLFLAQIK
                     GRVKKDEILYFKEDLKARVVELLDDGLRKVQFFQNDKTLDTSNLYNLLDKIGHIPLPP
                     YIKREDEKSDLKDYQSIFAKNLGAVAAPTASLHFSETMFENLRKKHKIYHLTLHVGAG
                     TFKGVECENIQEHKMHSEFFNIPQQACEIIDSKQAILGVGTTVTRTIEYYARTKTKSG
                     FCDLFLHPQNPPIRQNHLLTNFHLPKSTLIMLVSAFIGREQCLKLYKLAIKEKYRFYS
                     YGDAMLIL"
     gene            complement(3272..4237)
                     /gene="lpxD"
                     /locus_tag="ACHFOB_000137"
     CDS             complement(3272..4237)
                     /gene="lpxD"
                     /locus_tag="ACHFOB_000137"
                     /EC_number="2.3.1.191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016410 - N-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-(3-hydroxymyristoyl)glucosamine
                     N-acyltransferase"
                     /protein_id="HFN5798983.1"
                     /translation="MKLSEIAEFLSLEYKGEDIEISALNSLLKANFTELTYCDGEKNT
                     KDIPHTGAAAILVSKEYENLVPKDTKALITQSPHLSFAFLSKLFAKPLISTAKEKVQN
                     IAKSARIMPNVYIGDNVNIGENVIIMAGAYIGDNVSIGDESIIHPNVVIYNDTKIGKK
                     CHLLANCVIGSDGFGYAHNKNGEHYKIYHNGNVILEDFVEVGACTTIDRAVFDSTIIK
                     AGTKVDNLVQIGHNCNIGQNCIIVAQTGISGSSELGRNVIMGGQSATSGHLKIGDFST
                     IAARGGVSKNLEGGRVYGGFPIMLQKDWLKLQAKIAINFKEKSQD"
     gene            complement(4234..4698)
                     /gene="ilvN"
                     /locus_tag="ACHFOB_000138"
     CDS             complement(4234..4698)
                     /gene="ilvN"
                     /locus_tag="ACHFOB_000138"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990610 - acetolactate synthase regulator
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HFN5798984.1"
                     /translation="MRRVLSVIVLNEHGVLSRIVGLFSGRGYNIDSLTVAPLENKEFS
                     RINIVTSGNERTFEQIVKQLHKLIPTYKVIESEEFIDKEMALVKIPLNENLGGLDAVL
                     KAYNGTIANSNENFLFLMVADDANRIDNFLKTIKKYNPSDIVRSGSVLMEIK"
     gene            complement(4695..6395)
                     /locus_tag="ACHFOB_000139"
     CDS             complement(4695..6395)
                     /locus_tag="ACHFOB_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HFN5798985.1"
                     /translation="MKELSGSAMICEALKEENIKIVFGYPGGAALNIYDEIYNQKYFK
                     HILVRHEQAALHAADAYARMSGEVGVAIVTSGPGFTNTITGLATAYSDSIPLVLISGQ
                     VANSLIGTDAFQEIDAVGISRPCVKHNYLVTCIEEFPRILKEAFYIARSGRPGPVHID
                     VPKDVSATLGLWEYPKEISMKTYKPVYKGNSKQIKKFAELLKEAKRPLFYLGGGCISS
                     NASEQIRELVKFTKIPAVETLMALGTLRSDDVFNLKMAGMHGSYAANMALSECDLLVS
                     VGARFDDRITGKTSEFAKHATIVHVDIDPSSISKIINAHYPIVGDIKEVLKELLEELK
                     KENSNTTFKEWHETLKRYNELYPLSYEDSNEILKPQWVIEECAKMAPDARIITDVGQH
                     QMWVAQFYPFNYPRQLATSGGQGTMGYSLPAALGAKLAVGEEVVINFVGDGSVLMNIQ
                     ELMTAYEYGIKTINIILNNAFLGMVRQWQSMFYKEHFSQTDLSTQPDFIKIAQGFGCE
                     GYEISNKEEFIQAFSQALKSDKTSLLNVKIDRFEDVLPMVPAGGAIYNMILPKAKDRQ
                     "
     gene            complement(6413..6856)
                     /locus_tag="ACHFOB_000140"
     CDS             complement(6413..6856)
                     /locus_tag="ACHFOB_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HFN5798986.1"
                     /translation="MTLKEQILNDIKEAMKQKDDFKRDSLRTLNAAFKQIEVDERIEL
                     DNERIYKIIASEIKKRKDAIELYLKANREDLAQKEQNEISLFEIYLPKQLSDEELTLA
                     LKQLIEELGVSSLKEQGLIMKEAKIKLGASVDGKRLNLALKELLQ"
     gene            complement(6868..7887)
                     /locus_tag="ACHFOB_000141"
     CDS             complement(6868..7887)
                     /locus_tag="ACHFOB_000141"
                     /EC_number="3.5.4.25"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3,4-dihydroxy-2-butanone
                     4-phosphate synthase/GTP cyclohydrolase II"
                     /protein_id="HFN5798987.1"
                     /translation="MKFVSVEQAIKDLQAGKMLVMVDAEDRENEGDLIFPAQFSTQEK
                     VNFMIKEARGVVCVALDETLAKKFELPLMVPKNTSNHETAFTITVDAKDATTGVSAYE
                     RNMTIQIFADDNAKASDFVRPGHINPLIAKKGGVLERTGHTEGTVDLCKLAGLKGACV
                     ICEIVKDNGDMARREDLEIFCQKYDLNMIAVSDLIEYRLKHESLIKLEEKSQSVLAGF
                     KAEKFIFSDHNQTQHIAFCFKDIKKCENVKFHISGSDFELLTSDKFSKLLEQIKFLSE
                     NGGVIVFMQGEKSSTIQYKNYGIGAQILRYFGIEEIKLLSQSCDKDYIGLEGFGLNLK
                     ACNFN"
     gene            7980..8054
                     /locus_tag="ACHFOB_000142"
     tRNA            7980..8054
                     /locus_tag="ACHFOB_000142"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8012..8014,aa:Gln,seq:ttg)
     gene            8089..8164
                     /locus_tag="ACHFOB_000143"
     tRNA            8089..8164
                     /locus_tag="ACHFOB_000143"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:8122..8124,aa:Met,seq:cat)
     gene            complement(8186..9056)
                     /locus_tag="ACHFOB_000144"
                     /pseudo
     CDS             complement(8186..9056)
                     /locus_tag="ACHFOB_000144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344001.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
     gene            complement(9053..10121)
                     /locus_tag="ACHFOB_000145"
                     /pseudo
     CDS             complement(9053..10121)
                     /locus_tag="ACHFOB_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344000.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="HP0729 family protein"
     gene            complement(10130..10435)
                     /locus_tag="ACHFOB_000146"
     CDS             complement(10130..10435)
                     /locus_tag="ACHFOB_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798988.1"
                     /translation="MFSKIFSSLSLANAFKGFLFKRISSPMQSARIISMVLDIKNAFN
                     DNKDQTSSICKTLDLIVNFKKEHPQDFNELFEILKDLIQEYEQNPNEIKQNLKEILK"
     gene            complement(10442..10906)
                     /locus_tag="ACHFOB_000147"
     CDS             complement(10442..10906)
                     /locus_tag="ACHFOB_000147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004316478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798989.1"
                     /translation="MNFLSSLKDKAVNASEAIKDKTIKTAEVVKDIGMEVKCGIGWHA
                     GEYQNEKDKPKCFFSKICPDCGKYLTKNQHDFEAPEILNPDNCYGYRRCTLCSIQVFD
                     NFHNYYEIKKDAKCRMHEKCNLCGHERLGQTRHNWKYDENGQKICLDCKETV"
     gene            complement(11098..11691)
                     /locus_tag="ACHFOB_000148"
     CDS             complement(11098..11691)
                     /locus_tag="ACHFOB_000148"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798990.1"
                     /translation="MLELITQKDQDFLQNIENLDEEYIQKFINKKISEIAIAIETAAE
                     NADKAKDRTQKAKNLNTDSDWQTYIPIFGRWLGETSEEKKEIKSNMILEVAELQNESM
                     NQMTTILKEVVIFFTSSFCIATRMNQALSLIIAQGFVKSDGKVIRLSKAAKEQFQQIQ
                     KFTLSFIEDHEKHKDTINNIQVELDKKIKLMMSNINS"
     gene            complement(11691..12557)
                     /locus_tag="ACHFOB_000149"
     CDS             complement(11691..12557)
                     /locus_tag="ACHFOB_000149"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798991.1"
                     /translation="MKIFVYSAFGVVLKDFIEAVVIELKTTFREFGKENIKEIFKRFA
                     RRMEKVWEKIKAKWKDIFKGSLEAGIQAFFSNLLVFIINTIFTTLKKIVQIIRAGFTS
                     LYQAVKIIINPPKNIPKDEIYFEASKIFVSGMISAISMLGSEMIHKFLLSIPGFNVFL
                     SLPIPFTDETIGDALSLCISAAGGAVLSTIAIFYMDKWRSNSKIGNLQIQIVTQKNLI
                     AQYKIAKTWFALNDAYHIVKNETLATIQQIKKDNQMREQSSQEVETAIEEFENCNITK
                     KLYKKLNQTKEN"
     gene            complement(12629..13306)
                     /locus_tag="ACHFOB_000150"
     CDS             complement(12629..13306)
                     /locus_tag="ACHFOB_000150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798992.1"
                     /translation="MENLSKKECLRIEIDKGLENSLKELEDLMEKLPEQQTQTLFEQC
                     TKNAMDAVTGHFGLASTILNAKDGGNVTTLHNFEKGIVATEEDLQKLTKYQQGYKRDS
                     NYDKIKDNIRDNFPKIVRSEYTGEEMERGAGKNKAQLDHVISLKEIDRDPNMHLFLDD
                     AIRAEIANHPDNLKWLDASANASKGDRDLMEWGKEIDLKTGKTNFEKYGIDEKKLKKF
                     TIQPNQT"
     gene            complement(13448..13654)
                     /locus_tag="ACHFOB_000151"
     CDS             complement(13448..13654)
                     /locus_tag="ACHFOB_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798993.1"
                     /translation="MGIMLGILSLIAGFVAIVLMCSLYFIVFMVFVGIAILIFLSMQP
                     YPYNIIFCAIYLITILALVLWRKT"
     gene            complement(13645..14247)
                     /locus_tag="ACHFOB_000152"
     CDS             complement(13645..14247)
                     /locus_tag="ACHFOB_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5798994.1"
                     /translation="MFYTFFVILKQGEKMLKQIAFGSIALTATGYGIKKLYEKLSKPE
                     RKFDTHAIVPSCKDMINIEEYKLKRELEVEQKKNQIQEFLCECMECYSGFSKYFNSKE
                     FLEFEQNFTSKNNHKTEFLLSSYKDQMIKVIDYAKKFECLSAFLETQSEKNDLAVVKM
                     ISESMERKTQRFYLQTKFQTFPQYIFPSVWSSPMWGKQWE"
     gene            complement(14310..15686)
                     /locus_tag="ACHFOB_000153"
     CDS             complement(14310..15686)
                     /locus_tag="ACHFOB_000153"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HFN5798995.1"
                     /translation="MQQEYYDLDLERAILSSCIMSEEAYASIAGDISPKDFSLKAHQD
                     IFKAVIACSNNKEPISVSFLRKHKKIDEQILAEILATPSMIDLPAYVNELHEKSVKRQ
                     LLSFAHLLPTRINEDRAVSEIADEIGKEIFSITNRVNSRDIKDVDIVISELFEEFKKQ
                     KTLENKGIIGLDTGFEGLNKMTKGFKGGELIIIAARPGMGKTTLCLNFIDKVLRQKKG
                     VALFSLEMPATQIMQRMLSSKTSIPLQKILTADLNDDEWERLGDACNDYSQKKLYIYD
                     SGYATIADVRAILRRLKSQDESIGLCVIDYIGLMMSNSNFNDRHLQVSEISRGLKLLA
                     RELDMPIIALSQLNRGLEQRANKRPLMSDLRESGAIEQDADAILFVYRDEVYREQEEK
                     ERENKAKAEGKAYQRLFIPNPMQENAEIIVGKNRNGPVGTIEVVFLKEKSCFVDKPIG
                     YETTEFTG"
     gene            15840..16769
                     /locus_tag="ACHFOB_000154"
     CDS             15840..16769
                     /locus_tag="ACHFOB_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2860 family protein"
                     /protein_id="HFN5798996.1"
                     /translation="MKKYLFSCVLASILTQSATAVEFQEGFSGNLSIGVGARDIKSNI
                     STLANSDYLSSYNADNSDSSFIPFIGAELYYGNLIDNDRIFIKNYNGRDISGIALGYE
                     RAYLERFSTSFSVISSLREKAYANPYAIGNREETDVDRYGFKISQLYESDFGKFTTSY
                     LFSKNKYDKDTIAQSSLKREGYYHEIELNYNYSLLNLGLNYDYNDADGKAQSYSRYGF
                     SIGTNLAFANDYIFTPNLNLSKYEAVGTDPIFHKKQDGNIVKLNLKVVKNQFLGYNGL
                     YGFANYGIEKRNSDIGFYDETYQIILTGIGYKF"
     gene            complement(16817..18145)
                     /locus_tag="ACHFOB_000155"
     CDS             complement(16817..18145)
                     /locus_tag="ACHFOB_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015297 - antiporter activity [Evidence
                     IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HFN5798997.1"
                     /translation="MSSIFSTLSPFRLFVKCAVPNVISMAFISFYYIVDGIFVGKYLG
                     SDALAALALIIPFIMMSFALADMIAIGSAVQISMHLGLGKKNLARKIFSSSMLIIFII
                     SCFIGILEYFLGPVLIDCLNVSDEIKTMTKECMFVFALFAPFTMLSFALDNYLRICGK
                     TAYSMVMNVIIALSNIVLDYIFIVELGWGLFSAALATCLGLVLGGIFGIFPFLFQNLE
                     LKISSLYMNLKIFKNILYNGSSEFFGNISGSLYSIFANFVLLKISDTQAVAAFSIVLY
                     IDSFIIMLIIAIGDAMQPALSYNYAKKDFSRIKAIIKVVFFAGGFLSLFSIVLILIFG
                     ENLITLFTKENNQEFKTFAYTALMLFAFNYFFAWFNVLSGSFLTAFNKASFSLVLSLA
                     QNLFIPLFFLLFLSCFMGLNGVWLSPFFAEFCVLILAWIFLKRIFKDLSL"
     gene            complement(18326..19261)
                     /locus_tag="ACHFOB_000156"
     CDS             complement(18326..19261)
                     /locus_tag="ACHFOB_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-binding domain-containing protein"
                     /protein_id="HFN5798998.1"
                     /translation="MKKIDLIVVGAGPTGIGCAVEAKLKNKEVLILEKSNNICQTLMQ
                     FYKDGKRVDKAYKGCEGTNHGHVPFEDGTKESTIETFQNALKEHNIEVEFGSEVESVK
                     NENGVFLVSTAKGVYECKNIIVAIGRMGKPNKPDYKLPMTLTKIINFNANSVLGNEKI
                     LVVGGGNSAAEYAVDLANSNQVSLCYRKKEFTRLNDINLKDIHEAGNSGKVELKLGID
                     INEVEDDNGKAKVNFTDGTSDIYDRIIYAIGGSTPLDFLQKCGINVDDKGVPLMDENK
                     QSNVKGIFVAGDIATKNGASIVTGLNDAVKILSVL"
     gene            19332..20564
                     /locus_tag="ACHFOB_000157"
     CDS             19332..20564
                     /locus_tag="ACHFOB_000157"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004350 - glutamate-5-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HFN5798999.1"
                     /translation="MRNLLENIKKNSQKLLNLTPKDKEKIILKLAQILRENFKIILEA
                     NKKDMANFTKSGAMKDRLLLDEKRILALCEGLEKIAYIEDPIGKISKGWKNYAGLSIQ
                     KMSIPLGLICVIYEARPSLSAEIAALMIKSSNACVFKGGSEAKFTNEAIFTLVNKVLK
                     EFDLQDCFAMFTQRDEILQILAFDDLIDVIIPRGSSNMIQEIANNTKIPLIKQNKGLC
                     HAFVDQSANLDMALKIILNAKCQRVSVCNALETLLIHEKIAKNFISLLIPEFEKFKVK
                     IHAHENALAYFNNSNLKIFKANENTFDTEWLDFALSVKLVKDCDEAIEHINKHSSLHS
                     ETIISNDASNIAKFQRLINSSCIYANASTRFSDGGEFGFGGEVGISTSKLHARGPMGI
                     EDICTYKYIINGEGQIRE"
     gene            20561..21645
                     /locus_tag="ACHFOB_000158"
                     /pseudo
     CDS             20561..21645
                     /locus_tag="ACHFOB_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343988.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
     gene            complement(21681..22439)
                     /locus_tag="ACHFOB_000159"
     CDS             complement(21681..22439)
                     /locus_tag="ACHFOB_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HFN5799000.1"
                     /translation="MKIDTHAHIFLKKLNTVANARYKPDYDASFKDYKANLDHYDFNK
                     GVLVQPSFLGIDNEFLLQSIEKDENIKAIVVVDENIKFDELKKLKERKACGVRLNLIG
                     KELPNFKSMVWTQFFENLSKLKMQIEIQRDLDNNLVDIVENLIPYGCNIVIDHLARAN
                     ANLTNLEDLICLKNSRIFFKISGFYRAKIDYANNEQAVKFAKKIYEILKEHFPLSNFV
                     FGSDWPHTNFEANINFSSALVAFNEVVVSKKEQE"
     gene            complement(22450..23741)
                     /locus_tag="ACHFOB_000160"
                     /pseudo
     CDS             complement(22450..23741)
                     /locus_tag="ACHFOB_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343986.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
     gene            complement(23860..24864)
                     /locus_tag="ACHFOB_000161"
     CDS             complement(23860..24864)
                     /locus_tag="ACHFOB_000161"
                     /inference="COORDINATES: protein motif:HMM:NF022646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2891 domain-containing protein"
                     /protein_id="HFN5799001.1"
                     /translation="MEKFIKQFSFIALENIFRELPNKITHSFNDINDIKPPKLMYPIF
                     YGSYDWHSSVHSHWLLVKILKDFSHFAPKDEIIKALDSQFSKEKAEGELKYLQNPAHK
                     GFERPYGWGWFLKLTLEINLLAKENDKAEIWAKNLEGIADFFVKEFKEFLPKMDYPIR
                     VGTHFNSSFALYFALEYARFKKDQELEYCIIQSAKKWFLNDKNMQALEPCGDEFLSPV
                     LMEAVLLSAVLHKNDFVKFFKAYLPNLEAKEPATLFTPVSVSDRSDGKIAHLDGLNLS
                     RAWCFKILSNFCDENLKILLRNNATEHFDKAIAHIEDDYLGSHWLGSFALLALDVDIL
                     "
     gene            complement(24874..25827)
                     /locus_tag="ACHFOB_000162"
     CDS             complement(24874..25827)
                     /locus_tag="ACHFOB_000162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF979 domain-containing protein"
                     /protein_id="HFN5799002.1"
                     /translation="MISLDLLYYIVGILFLVFGILSFSNQAKDIKSRISGGVFWISYS
                     FTFLLAGVLPHFVMGCIVILLALIAGFNLLKPAKIEVSKEEKEYEIKHANIYKNKLFI
                     PALMVPLITLIGTFLFPYLSFFENKNATLMALIIGIIISSVVACFMFKASPKRAVKDA
                     AHTMDHISWAALLPQILATLGVVFVSTGMGDQVSKLLSSYISLDNAFIAVAVYCIAMA
                     LFTIVMGNAFAAFPVITAAIALPILIIQMHANPAIIGAIGMLSGFCGTLMTPMAANFN
                     IVPAALLNLDDKNGVIKAQFMSGLVLLVANIFLMYFLAFRF"
     gene            complement(25814..26506)
                     /locus_tag="ACHFOB_000163"
     CDS             complement(25814..26506)
                     /locus_tag="ACHFOB_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF969 domain-containing protein"
                     /protein_id="HFN5799003.1"
                     /translation="MEWLLLASIPLIVLGFALKINPFLVVTSVGIYAGLVSGFDFVKV
                     VSDIGKSFVDNRYVAIIWLILPLLAVLERKGLREQAKNLISKIKVASTGRILMCYFVF
                     RQVTAALGLLSLGGHAQMIRPLIAPMAEAAAKLKFKNLTHKDSQKIKAFSAGTDNVAV
                     FFGEDIFIAVHSILFIKAFYESNGIIVEPLHLSVWAIPTGILALIIHCSRLYLFDKRL
                     EKTYKGLSDDKS"
     gene            complement(26665..27234)
                     /gene="efp"
                     /locus_tag="ACHFOB_000164"
     CDS             complement(26665..27234)
                     /gene="efp"
                     /locus_tag="ACHFOB_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HFN5799004.1"
                     /translation="MASYSMGDLKKGLKIEIDGIPFKIVEYQHVKPGKGPAFVRIKIK
                     SFIDGKVLEKTFHAGDKCEAPNLEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGE
                     AKKWMLDGMMVDVLFHNGKAIGVEVPQVVELKIIETAPNFKGDTQGSNKKPATLETGA
                     VVQIPFHVLEGEVIRVDTVRGEYIERANK"
     gene            27348..27668
                     /gene="rnpB"
                     /locus_tag="ACHFOB_000165"
     ncRNA           27348..27668
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="ACHFOB_000165"
                     /product="RNase P RNA component class A"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00010"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00010"
     gene            complement(27666..27941)
                     /locus_tag="ACHFOB_000166"
     CDS             complement(27666..27941)
                     /locus_tag="ACHFOB_000166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799005.1"
                     /translation="MKQWLSDFKLALIQEDVNKLENLLDELDMKAFIKNLAKESPSED
                     FLKENANDVFYQVQALLQEAVILIEQKKKTKAVEIQKFQKALTYFKS"
     gene            complement(27922..28308)
                     /gene="fliS"
                     /locus_tag="ACHFOB_000167"
     CDS             complement(27922..28308)
                     /gene="fliS"
                     /locus_tag="ACHFOB_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export chaperone FliS"
                     /protein_id="HFN5799006.1"
                     /translation="MQNNLAYNAYSQNQVGIESPQKLIEMLYEGILRFCARAKVAIRN
                     EDIEQRVYFVKRTTAIFIELINTLNYEKGGEVAHYLSGLYTREIQLLSLANLENNEDR
                     INEVINVTKGLLEAWREVHNNETVAQ"
     gene            complement(28320..30251)
                     /gene="fliD"
                     /locus_tag="ACHFOB_000168"
     CDS             complement(28320..30251)
                     /gene="fliD"
                     /locus_tag="ACHFOB_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009421 - bacterial-type flagellum
                     filament cap [Evidence IEA];
                     GO_process: GO:0007155 - cell adhesion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar filament capping protein FliD"
                     /protein_id="HFN5799007.1"
                     /translation="MAFGSLSSLGFGSGVLTQDTIDKLKEAEQKARIDPYTKKIEENT
                     TKQKDLTEIKTKLLSFQTAVSSLADATVFAKRKVVGSISDNPPASLTVNSGVALQSMN
                     INVTQLAQKDVYQSKGLANDSGFINANLTGTTDLTFFSNGKEYTVTVDKNTTYRDLAD
                     KINEASGGEIVAKIVNTGEKGTPYRLTLTSKETGEDSAISFYAGKKDAQGQYQSDPEA
                     EKIFSNLGWELDKTTQTIDPAKDKKGYGIKDASLHIQTAQNAEFTLDGIKMFRSSNTV
                     TDLGVGMTLTLNKTGEINFDVQQDFEGVTKAMQDLVDAYNDLVTNLNAATDYNSETGT
                     KGTLQGISEVNSIRSSILADLFDSQVVDGTTEDANGNKVNTKVMLSMQDFGLSLNDAG
                     TLSFDSSKFEQKVKEDPDSTESFFSNITKYEDINHTGEVIKTGSLSKYLNSNGGNTNG
                     LEFKPGDFTIVFNNQTYDLSKNSDGTNFKLTGKTEEELLQNLANHINSKGIEGLKVKV
                     ESYNQNNVTGFRLNFSGDGSSDFSIKGDATILKELGLSDVNITSKPIEGKGIFSKLKA
                     TLQEMTGKDGSITKYDESLTNDIKSLNTSKDSTQAMIDTRYDTMANQWLQYESILNKL
                     NQQLNTVTNMINAANNSNN"
     gene            complement(30254..30619)
                     /locus_tag="ACHFOB_000169"
     CDS             complement(30254..30619)
                     /locus_tag="ACHFOB_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlaG family protein"
                     /protein_id="HFN5799008.1"
                     /translation="MEISKANGQMDTALANISQRTSETQASLNIQTDRSQGQEGDDGQ
                     QRGVSEKLADITKKLNEQMDSLDTNVRFGYSDKIGSMYISVTEKSTGREIRQIPSEEA
                     MRLAEYFRDVIGMIFDKES"
     gene            complement(30776..32578)
                     /locus_tag="ACHFOB_000170"
     CDS             complement(30776..32578)
                     /locus_tag="ACHFOB_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HFN5799009.1"
                     /translation="MKEFIQILKENDLLRVIEEPVDVDLEIAHLAYIEAKKGEKGKAL
                     LFKNPIDKKLNKQYKFPVLMNTFCNEKALNLAFGRDYEEVAEEISKLTKLHIPTSFKA
                     KMDFFMNLLSFKNIPPKRLKKNKALYDYEILNSLEELPILKTWEDDAGKFITMGQVYT
                     QNLDKTQNNLGMYRLQMSDKNELLMHWQIHKDGANFYHEYKNAGFKKMPVSIAIGGDP
                     LYIWCSQAPLPKGIFELLLYGFIKKTPAKITPCENGIFIPYDSDVVIEGYVDLEEFKI
                     EGPFGDHTGFYTPAELFPVMKVEKIYAKKDAIYQATVVGKPPLEDKIMGLGTERIFLP
                     LLQTSVPDLIDYNMPENGVFHNLILAKIDAKYPAHAQQIMHAFWGVGQMSFVKHAIFV
                     DKNAPSLKDYDALIPYMLDRFNTKKILISEGICDQLDHASPNSCFGGKAGLDACEEIQ
                     VEELEILEDEKLLELFKTKVELLNLKQFYKESKSPIVCILLDKKEKIEQSFDKLLEFK
                     KHFRILVFLDAENKLENSYMLVWRVVNNIDAKRDIFIKEERLGVDASAKGEAEGYLRA
                     WPKQTDCTKSVIEDLILRNILENNPDLFNKFEIF"
     gene            complement(32575..33498)
                     /gene="hemC"
                     /locus_tag="ACHFOB_000171"
     CDS             complement(32575..33498)
                     /gene="hemC"
                     /locus_tag="ACHFOB_000171"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HFN5799010.1"
                     /translation="MKLIIATRKSQLALWQSEHVAQILKNTHQIEVLLEGFKTKGDVL
                     LDSPLAKIGGKGLFTKELEESMLRKEAHLAVHSLKDVPSFFPQGLVLAAVSKREQSND
                     AMLSQNYKDFLSLPKGAKIGTTSLRRKMQLLLLRPDLDIISLRGNVNSRIEKLKNNDF
                     DAIILAMAGIKRLNLDKQVNFVYEFSKDELIPAASQGALGIESINDEKILELLKCLND
                     ENALIETSIEREFIATLEGGCQVPIGINAELLGDEICVRAVLGLPDGSEILKDKRMIK
                     KNDFKGFGESLAKEFIAKGAKELLKKAESMI"
     gene            complement(33495..33884)
                     /gene="fxsA"
                     /locus_tag="ACHFOB_000172"
     CDS             complement(33495..33884)
                     /gene="fxsA"
                     /locus_tag="ACHFOB_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxsA family membrane protein"
                     /protein_id="HFN5799011.1"
                     /translation="MNYKLSLSPLFVLEIIASILFIVFFGFGNFLFFILLSMIFGAVL
                     LGIFWKNMLEFQMGGLKDMLTQFSFVIAGFLLVFPGIITSVFGIFVFFFGIALKLITK
                     SKYQYTKQEYQNSNEEIIDVEIIEDRK"
     gene            complement(33881..35590)
                     /locus_tag="ACHFOB_000173"
     CDS             complement(33881..35590)
                     /locus_tag="ACHFOB_000173"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0002161 - aminoacyl-tRNA editing activity
                     [Evidence IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HFN5799012.1"
                     /translation="MMRFTKFYAPSLKEAPKDASLPSHIFLTRAGFVEQIGSGLYNFL
                     PLGKRVLDKIKNIVKEEMDKAGAQEVNLSFITPASLWQESGRYNVFGKELLRFKDRKE
                     NEFVLGPTHEEAMLSLVKNKITSYKQLPLHLYQIGLKFRDEARPRFGLLRCREFLMKD
                     GYSFHANEEDLGREFELMYKTYSQILQRMGLDFRAVEADSGAIGGSGSKEFMVLAKNG
                     EDDILICENCDYAANVEAAKRAKKTCQDERPEANYASKFHTPNIKTIDSLAQFFKINA
                     FYTIKAVVKKAIYENESKLVVFFIRGSDDLQEIKAQNACSALELVDASEEELEKAGLV
                     AGFIGFVGLKDIDFYIDFELENEKQMIMGANEKDYHLIGIDVVNLNKDRFKDLIEVKE
                     GDCCVKCGAKLKQSKGIEVGHIFKLGQKYSKAMNANFLDENGKSQPFYMGCYGIGVSR
                     LLAVAIEANHDEKGCIWNKTLAPFVLEIIVSNLKDEKALEFANKLYEDLTNLGLEVLL
                     DDRNERFGVKMNDFELMGFPYALVIGKGLENNEIELIQREDLVKELIKTDELMEILKK
                     KVL"
     gene            complement(35574..36872)
                     /gene="hemA"
                     /locus_tag="ACHFOB_000174"
     CDS             complement(35574..36872)
                     /gene="hemA"
                     /locus_tag="ACHFOB_000174"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HFN5799013.1"
                     /translation="MYYCISFTHKNTDIALREKLSFSNEAKKSEFLKIISTHENIEEC
                     LVISTCNRVEIVAFVKMACAEFIVKSLALLCDVDKDILLEKADIFEDSGAIHHLFSVA
                     SSLDSLVVGETQIAGQLKDAFAFAVKNNFCGVHLSRAVHSAFKCAAKVRNETQISKNS
                     ISVASVAVAKAKELADLTQKKAVVIGAGEMGELAAKHLIAAGAKVIILNRDLQKAKDL
                     CERLGVLSEYDSLENLKKYLNQYEFFFSATNAPNAIITNSLVEELSYKRYFFDIAVPR
                     DIDINENENISVFAVDDLEIVVQKNLALREQEARMAYGIIGRETSEFFRYLNDLALMP
                     IIKAIRLQAKEYADKQLEIALKKGYLKKSDKEEARKLIHQVFKAFLHTPTVNLKHLQG
                     KMQSDTVINAMRYVFDLQNNLEGLNQYKCEFDMENNDEIY"
     gene            complement(36872..37765)
                     /locus_tag="ACHFOB_000175"
     CDS             complement(36872..37765)
                     /locus_tag="ACHFOB_000175"
                     /EC_number="2.5.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexaprenyl-diphosphate synthase"
                     /protein_id="HFN5799014.1"
                     /translation="MQKIDELIKQFLQELGYEPILNMLSNVKSGKKLRSKLLLAIADE
                     SEIAFKICAAIELIHLASLLHDDIIDESELRRGARSVNAEFGTKNALMLGDILYSKAF
                     YELSKMDARFASIISDAVVKLAIGELMDVDLGEKFNINKEAYLKMIYNKTAVLIEASA
                     RCGAILAGLYEKDFAEYGKNLGLAFQMIDDILDIKSDEKILGKPAMNDFKEGKTTLPY
                     IYLYENLQEQDRIYLQTLFKKDLNENEKEWLKTKFEEQKALEKAILEAKTYAKKARKA
                     IEKYDNNKLNDIIKAMIDREF"
     gene            complement(37779..38315)
                     /locus_tag="ACHFOB_000176"
     CDS             complement(37779..38315)
                     /locus_tag="ACHFOB_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exporting protein"
                     /protein_id="HFN5799015.1"
                     /translation="MFKISPYLICIFFIFSNVLASEPTFDYTYKFILKKDERASVQIK
                     EIGYEDKVQNFDFYWTLFDNTNIIVHSKFRKYPRQFVMSLRRNLDWVTQTLIPDYTNP
                     HIDRARLILEFSGYNKGLATFTVYIEDKESRLMVEFLDPRKKALQNPPQNNQVVPMIN
                     FNEPQVKPLTSKENNNSN"
     gene            complement(38318..>38540)
                     /locus_tag="ACHFOB_000177"
     CDS             complement(38318..>38540)
                     /locus_tag="ACHFOB_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2018 family protein"
                     /protein_id="HFN5799016.1"
                     /translation="KFIEIIQNGNLGALEKVFEEFFADHIAMVELLEKQGLTEMDVKN
                     FILENGDFIEERQNDIYIELGAKILGHEG"
BASE COUNT        13042 a         6860 c         4942 g        13696 t
ORIGIN      
        1 atatccatat tccattttgt gaaagcaaat gtaattattg cgcttttaca agtttgaaaa
       61 aaaatgatta tgaaaaagct tattttcagg ctttaaaaga agatattgtt tttcaattaa
      121 aacaatttaa cattcaatca aatcaaatta aaaccttatt cataggcgga ggaacaccaa
      181 gttgtgttga tgcgtataat tatgaagata tttttaaaat tttatatccc ttgctagata
      241 aaaatgtaga aatttcatgc gaagctaatc ccaactcagc aacattaaat tggcttaaaa
      301 atatgaaaaa tctaggagtt aatcgcattt cttttggagc tcaaagtttt catcctaaaa
      361 aacttcactt tcttggaaga attcacaatc aagaaatgat tatcaaagca ttagaaaatg
      421 caaataaagt aggttttaaa aatatcaatt tagatcttat ttatgataca aaattagaca
      481 ataaaaaaat gcttgaattt gaactcttac acttaaaaca aatcaaggct ttaatcacac
      541 accttagtgc ttataattta accatagaat caaacacagc ctttgccaaa aaagaacatt
      601 tcaaaaaaaa tgctcctaat ttaatgaaat ttttcatcaa acaacttcta gagcttaact
      661 tttttcaata tgaaatcagt aatttttcaa aaaccaaagc ccaaatttgc aaacataatc
      721 ttgcttattg gcaaggaaaa aactacctag cttgtggatt aagtgcagta ggattttatg
      781 aaaataagcg tttttataca gcaaaaaatt taaaaaatta catagaaaat cctactttta
      841 gatctataga gcaactaagc tccaaagact tgaatttaga acatctattt ttaggactta
      901 gaagtatagt agggattgat gaaacaaaac tcaatcaatg gcaaaaagac aaaataaata
      961 tattattaaa agaaaaaaaa cttttttaca aaaataaaag atattttaat cctaattttc
     1021 tcattagcga cgaacttgct ttatatctct catcttaaat ttaagttttt taagtaaaat
     1081 atttatttaa aatatcaaat caaagagtaa cgattaatga gttttggtga aattatagtt
     1141 attttagttg tagcgatttt agtcttaggg cctgataaac ttccagaagc tatagtacaa
     1201 atagcaaaaa ttctaaaggc tgtaaaacgc aacatagatg atgcaaaatc aagcatagaa
     1261 aaagaaatac gcatcaatga cttaaaagaa gaagctaaga aatacaaaga tgaattttca
     1321 agcactaatg aaaatatacg caaaaaactc agttttgaag aatttgatga ccttaaaaga
     1381 gatattttag ataaaacaaa ggtagattta acctttgata gcagagatga taacacaaaa
     1441 aataacctta gcggacaaaa tttaaataca gaagaaaaac caaatcttag caaattagaa
     1501 acacaagata aaacggaaaa ataaatgttt gaagaattaa gacctcattt aatagaactt
     1561 agaaaacgcc tttttataag cgttgcttgc attgtagtta tgtttattgt atgttttgct
     1621 ctacgaagct atatcttaga tattctaaaa gctccactta tagctgtttt acccgaagta
     1681 gccaaacatg tgaatgtaat tgaagtacaa gaagccttat ttaccgcaat gaaggttagt
     1741 ttttttgcag cctttatctt ttctctacct gtaatttttt ggcaattttg gaaatttgta
     1801 gctccaggac tttatgataa tgaaaaacgc cttgtggtgc cttttgttag ctttgcaagc
     1861 attatgtttg ccttgggggc ttgtttttgc tattttgttg tagtgccttt ggcttttaaa
     1921 tttttgatta attttggttt aaatgaagat tttaatcctg tgattaccat aggaacttat
     1981 gtagattttt ttacgaaagt tgttgtggct tttggcttag cttttgaaat gcctgtaatt
     2041 gcctttttct ttgctaaaat cggacttata gatgatagtt ttttaaaacg ccattttcgc
     2101 atagctgttt tagttatttt tgttttttca gcctttatga ctccacctga tgttttatct
     2161 caatttttaa tggcaggacc actttgcgga ctttatggac tttctatttt aattgttcaa
     2221 aaggtaaatc ctgccccaaa agataaagaa agtgatgaat aaagacttac ttctttcaag
     2281 ctatgattac actctagcta atgaactcat agccaactat cctgcaaatc caaaagaaga
     2341 tgctaggctt ttggtttttg atcgcaaaaa caaagaaatt tttcacacta cttttaaaaa
     2401 tttaaaagac tttttacccg actgcgcgat ttttttcaat gataccaaag ttattaaagc
     2461 aagaatttat ggcaataaag caagcggagg aaaaatagag cttttcttac atcaaccttt
     2521 tttaaattct cacaatccgc tttttctagc tcaaattaaa gggcgggtta aaaaagatga
     2581 aatcttatat tttaaagagg atttaaaagc gcgcgttgta gaacttttag atgatggtct
     2641 tcgaaaggtt caattttttc aaaatgataa aaccttagac acctcaaatc tttacaacct
     2701 gcttgacaag ataggacata tacccttgcc tccttatatt aaaagggaag atgaaaaaag
     2761 cgatttaaaa gattatcaaa gtatctttgc aaaaaattta ggtgcagtgg ctgctccaac
     2821 tgcaagtttg cattttagtg agactatgtt tgaaaattta agaaaaaaac acaaaattta
     2881 tcatttaacc ttgcatgtag gagctggaac ctttaaaggt gtggaatgtg aaaatataca
     2941 agagcataaa atgcatagtg aattttttaa tattccgcag caagcatgtg aaattataga
     3001 ttctaaacaa gctattttag gtgtaggaac aacggtaaca agaaccatag aatattatgc
     3061 aagaactaaa acaaaaagcg gtttttgcga tcttttttta cacccgcaaa atccacctat
     3121 aagacaaaat catcttttaa ccaattttca tttaccaaaa tctactctta tcatgctagt
     3181 ttcagctttt atcggtagag aacagtgttt aaaactttat aaactcgcca taaaagaaaa
     3241 atatcgcttt tactcttatg gcgatgcgat gttaatcttg tgatttttct ttaaaattta
     3301 ttgctatttt agcttgaagt tttagccaat ctttttgaag catgatagga aaacctccat
     3361 aaacacgccc gccttctaaa tttttactca caccgcctct tgcagctata gtactaaaat
     3421 cgcctatttt taaatgtcca ctcgttgcac tttgaccacc cataataaca ttgcgtccca
     3481 actcacttga acctgaaatt ccagtttgtg ccacaatgat acaattttga cctatattgc
     3541 aattatgtcc gatttgaact agattgtcta ccttagtacc tgctttgata atagtgctat
     3601 caaaaactgc tctatctata gttgtgcaag cccctacttc tacaaaatct tctaaaatca
     3661 cattgccatt atgataaatt ttataatgtt cgccgttttt attgtgcgca taaccaaagc
     3721 catcgcttcc tattacacaa ttggcaagca aatgacattt tttaccgatt ttagtgtcat
     3781 tataaatcac tacattagga tggataatac tctcatcacc aatgctaaca ttatcgccta
     3841 tataagctcc cgccataatg attacatttt caccgatatt tacattatca cctatataaa
     3901 cattaggcat gattcttgca ctttttgcga tattttgtac tttttcttta gctgtgctta
     3961 tcaaaggttt agcaaaaagc ttgcttaaaa aagcaaaact caaatgtgga ctttgagtaa
     4021 ttaaagcttt agtatcttta ggtactaaat tttcatattc tttagatact aaaatagcag
     4081 cagctcctgt gtgaggtata tctttggtat ttttctcacc atcacaataa gtaagctctg
     4141 taaaatttgc tttcaataaa gaatttaaag cactgatttc tatatcctcg cctttatatt
     4201 ccaagcttaa aaattctgct atttcactta atttcattta atctccatca aaacagatcc
     4261 actgcgaact atatcactag gattgtattt tttaattgtt tttaaaaaat tatcaatgcg
     4321 atttgcatca tcagcaacca ttaaaaacaa aaaattctca ttgctatttg caatagtacc
     4381 attataagct ttcaaaacgg catcaagccc acctaaattt tcatttaaag gaattttcac
     4441 caaagccatt tctttgtcaa taaattcttc actttctatc actttataag taggaatgag
     4501 cttatgaagt tgtttgacta tctgctcaaa agttctttca tttcctgaag tgactatatt
     4561 aatacgagaa aattctttat tttccaaagg tgctactgta agcgagtcaa tattataacc
     4621 tcttcctgaa aaaagtccta ctatacgaga taaaacccca tgctcattta aaacaattac
     4681 cgataaaacc cttctcattg tctatccttt gcctttggta aaatcatatt ataaatcgca
     4741 cctcctgcag gcaccatagg taaaacatct tcaaagcgat caatttttac atttaaaaga
     4801 gaggttttat cactttttaa agcttggcta aaagcttgga taaattcttc tttgtttgaa
     4861 atttcataac cttcacaacc aaaaccttga gctattttga taaaatcagg ctgagtgctt
     4921 aaatcagttt gtgaaaaatg ctctttataa aacatactct gccattgtct taccatacct
     4981 aaaaaggcat tatttaaaat aatatttata gtttttatac catactcata agcagtcata
     5041 agctcttgga tattcatcaa aaccgatcca tcgcctacga aattaatcac cacttcttca
     5101 cccacagcaa gttttgcacc caaagccgca ggtaaagaat atcccatagt tccttgccct
     5161 ccacttgttg caagttgtct tggataatta aaaggataaa actgcgctac ccacatttga
     5221 tgctgaccca catcagtaat aatccttgca tctggagcca ttttcgcaca ttcttcaatc
     5281 acccattgcg gttttaaaat ctcattgcta tcttcataag aaagcggata aagttcatta
     5341 taacgcttta aagtttcgtg ccattcttta aaagttgtgt tggaattttc ctttttaagc
     5401 tcttctaaaa gctctttaag aacttcttta atatctccta ctataggata atgcgcattg
     5461 ataatctttg aaatagaact aggatcaata tcaacatgaa ctatagttgc atgtttagca
     5521 aattcacttg tttttcctgt aattctatca tcaaatctcg ctcctacact cacaagcaaa
     5581 tcacactcac ttaaagccat attagcagca tagcttccat gcatgcctgc cattttaaga
     5641 ttaaaaacat catcacttct taaagttcca agcgccatta aggtttcaac tgctggaatt
     5701 tttgtaaatt ttacaagctc tctgatttgc tcgcttgcat tagaactgat acatcctcca
     5761 cccaagtaaa ataaaggtct ttttgcttct tttaaaagct ctgcaaattt tttaatttgc
     5821 tttgagttac ccttataaac gggcttataa gttttcatag aaatttcttt aggatattcc
     5881 caaagtccca aagttgcact tacatctttt ggcacatcta tatgcacagg cccaggtcta
     5941 ccgcttcttg ctatataaaa agcctctttt aaaatgcgtg gaaactcttc tatgcaagta
     6001 actaaataat tatgctttac acaaggtctt gaaataccta ctgcatcaat ttcttgaaaa
     6061 gcatctgtac caataagaga atttgccacc tgccctgaaa tcaacaccaa agggatagaa
     6121 tcactataag ccgtagctag gcctgtaata gtatttgtaa aacctggtcc gcttgtaact
     6181 atagctacgc ccacttctcc actcattctt gcgtaagcat cagcagcatg caaagccgct
     6241 tgttcatgac gcactaaaat atgtttaaaa tacttttgat tataaatttc atcataaata
     6301 ttaagcgcag cgcctccagg ataaccaaaa acaattttaa tattttcttc ttttaaagcc
     6361 tcgcaaatca ttgctgaacc acttaactct ttcataataa cactccaaaa aattattgta
     6421 aaagctcttt aagtgctaaa ttaagtcttt tgccatcaac actcgcacct aattttattt
     6481 tagcttcttt cattatcaaa ccttgttctt ttagtgaact tacacccaat tcttctataa
     6541 gttgttttaa ggctaaagtt aactcctcat cacttagttg tttaggcaga taaatttcaa
     6601 aaagacttat ttcattttgt tctttttgtg ctaaatcttc acgatttgcc ttaagataaa
     6661 gttcgattgc gtctttgcgt tttttgattt cacttgcaat gattttataa attctttcat
     6721 tatctaattc tattctttca tccacttcta tttgcttaaa agctgcattt agagttctta
     6781 aactatctct tttaaaatca tctttttgtt tcattgcctc tttgatatcg tttaaaattt
     6841 gttcttttaa agtcattttt ttccttttta gttaaaatta caagctttaa gatttaaacc
     6901 aaaaccttct aagcctatat agtctttatc acaactttga gataaaagtt taatttcttc
     6961 tataccaaaa tatcttaaaa tctgtgctcc tataccatag tttttgtatt gaatggtact
     7021 ggatttttct ccttgcatga aaactataac gccaccattt tcactaagaa atttgatttg
     7081 ctctaaaagt tttgaaaatt tatctgaagt taaaagctca aaatcactac cactgatatg
     7141 aaatttaaca ttttcacatt ttttgatatc tttaaagcaa aaagctatgt gttgggtttg
     7201 attatgatca ctaaagataa atttttctgc tttaaagcct gctaaaacac tttgactttt
     7261 ttcttcaagc ttaataaggc tttcatgttt taggcgatat tctataagat cgcttacggc
     7321 tatcatattt aaatcatatt tttggcaaaa aatttctaga tcttctcttc ttgccatatc
     7381 tccattatct tttacaattt cacaaatcac acaagcacct tttaatcctg ctaatttaca
     7441 aagatcaacc gtaccttctg tatgacctgt gcgttctaaa accccacctt tttttgcgat
     7501 taaaggattg atatgccctg gtcttacaaa atcactcgct ttagcattat catcggcaaa
     7561 aatttgtata gtcatatttc tttcataggc gctaactcct gttgtagcat cttttgcatc
     7621 tacagttatg gtaaaagcgg tttcgtgatt tgaagtattt ttaggcacca ttaaaggaag
     7681 ttcaaatttt tttgccaaag tttcatctaa ggctacacaa accacaccac gagcttcttt
     7741 tatcatgaaa tttacttttt cttgagtgct aaattgcgca ggaaagatta aatcgccttc
     7801 attttctcta tcttctgcat ctaccataac aagcattttt cctgcttgta aatccttaat
     7861 cgcttgttct acgctaacaa atttcatttt tatttcctta aaatttttaa aattataact
     7921 taaattgctt gacaaataaa ttaaaattca ttataatcac acttttaaaa aatatttatt
     7981 ggggtatcgc caagcggtaa ggcaacaggt tttggtcctg tcattcaggg gttcgaatcc
     8041 ctttacccca tccacttctt attttatatt tcaaagtatc ttatatgccg cgaagtagag
     8101 cagtggttag ctcgtcgggc tcataacccg aaggtcggga gttcaaatct ccccttcgca
     8161 accagttatg aatttaaaat aaattttatt tagatagatt gtttaaatag ctttttaaaa
     8221 tatcttccag ccgtgttttc agttctatag gggctagaat tttcatataa ggaatccact
     8281 gtttaaccaa gtgtaaaatt tcatcttcat aggaaacttg agtgcttaaa gtatagcttg
     8341 tttcatcttc atcaatgatt tgataattgc ttagtatttc ttttctaaaa aaatattcct
     8401 tagcattttt atcaagtttt aaaatcactt ctttgctttc tccaagccag atattaggat
     8461 cattttggat ttgtttctca agtttttcat tgggaataaa attttcattt ttagtgcgaa
     8521 gttttgaaat tttatctaaa ttaaaatgtt ttaatttatc gctttcatct cctaaaagat
     8581 accaaattcc tttgtaattt acgagtttgt aaggtttgat ttggcgttct ttttccttgt
     8641 agaaaaaatt caatacattg tgtttgagta tagctacact aagatcttta aaaagctcat
     8701 aatccacctt ttgaaaacct tcatttttta ccatcaaaac tttatttacc ctatggctta
     8761 aaagatcaac tataaagcct tgatcgagtt ttggataaag ctcagcaata ccacttaagg
     8821 tggcgaaatt ctgtatatct ttaaagctta attttcccaa agcaaagctt tctaaaacat
     8881 atcttccatt ttctttttta ataggcataa aagtaagtct ttcgttaaga tctctttgta
     8941 tggttcttgt atcgacatta aactcttgtg caagctcttg ggcgcttaga ctttccccat
     9001 tgttattttg ataaaatctg caccaagcgt atgcttaatt tgtcgtattc tttcatgaaa
     9061 tttccttgtg ggttaaaatg ctttttaaca agcttacacc ttctatacct aaaatttcat
     9121 ttctaagttt tttgacttca tttaaacttg gagcttttgc atgaacggct tcattgcgga
     9181 tttcttgaat gagagtaaga ctttttgaaa aaggataatt gataaattga gttaaacttt
     9241 ttcctaaatg acattggata ttttcatgtc tgagtagaaa tttaatactt ccaagattag
     9301 gcttttgggt aaaaaaatct ttaagtataa aagatttgcc ttggacatta taagttaaat
     9361 cataaaggct aggatctttc atacaagctt ttaaaagaac ttttttggca aaagcgtaaa
     9421 tttcatattc taaggttttg gagtatttga ctacaatgct tgtaaaatca tttaaaagat
     9481 cgttttcgct ttgtaaaagc tctaattctg catgaatgat attgcttatg ctatcagggt
     9541 gcaagagata aaaaatcctt ttgccaaaaa caaagcgtat gaaattttct tgcatggcta
     9601 ggtattcttt gcttttatac acgcttagat aatgcttttc atctcctaaa aaataagaac
     9661 actcttcttt taatctcaca ggcaaaggat aggtgtaatt attgccataa atagcatagg
     9721 tgtgatcgtt tggggtgatg aaattggcta aaaatttatc tcttaaaaga ctaaaatctt
     9781 ccctgaccaa ttctcttaaa tcactgatga taaaaaagtc ttccacttct aaattttttt
     9841 ctttataata actaggaatc aaactttcat caacattttt agaaattttt accactttag
     9901 cgacaaataa attagcataa tcgcttaaaa aaaagttgca agaaattttc ttcatttgta
     9961 ctttggtaaa tttcttctaa ggaattttgc ttttcttgat cgttgagttt tgatttgatt
    10021 ttgccaaagg caacttggga tttttcttgc aaaatgctta aatgttgctt gatgacatct
    10081 tcttgataat agggattata aaggattaaa aggtggttca tgctttgcct tattttagga
    10141 tttctttgag attttgcttg atttcattag gattttgctc gtattcttgt atgagatctt
    10201 ttaaaatttc aaacaactcg ttaaaatcct gcgggtgttc ttttttaaaa tttactatca
    10261 aatccaaagt tttacaaatg ctgcttgttt gatctttgtt gtcattaaaa gcatttttta
    10321 tatctaaaac catactgata atacgagcac tttgcatagg gcttgaaatg cgtttaaata
    10381 aaaatccttt aaacgcattt gcaaggctaa gagatgagaa aatcttagaa aacatctgtc
    10441 tttatactgt ttctttgcaa tctagacaaa ttttttgccc gttttcgtcg tatttccaat
    10501 tgtgtcttgt ttgtcctaat ctttcatgtc cgcataaatt acatttttcg tgcattctgc
    10561 attttgcatc ttttttgatt tcataataat tatgaaaatt atcaaacact tgaatagaac
    10621 aaagagtaca tcgtctatat ccataacaat tatcaggatt taatatttca ggagcttcaa
    10681 aatcatgttg attttttgta agatattttc cgcaatcagg gcaaatttta gaaaaaaaac
    10741 attttggttt atctttttca ttttgatatt cacccgcgtg ccaaccaatc ccacatttta
    10801 cttccattcc aatatcttta acaacttcag cagtcttaat agttttgtct ttaattgctt
    10861 ctgaagcatt taccgcctta tcttttaaag aacttaaaaa attcataaat taacgcccta
    10921 taaaatataa tacaatcgac gcaacagaaa ctatcaaagc taaaattgaa atgctatttg
    10981 taaaaacatt ttttctttta tttaaaatat ctttcagttc attgatttta cattcttgtt
    11041 cttgaacaat tttgtcatta taatttttat attgtataaa ttcttgataa tgtttttcta
    11101 tgagtttata ttgctcatca tcaatttgat ttttttatct aattctactt ggatattatt
    11161 tatcgtatct ttgtgttttt catgatcttc tataaaactc agtgtgaact tttgtatttg
    11221 ttgaaattgt tctttagcgg ctttagataa acgaattacc ttgccatcgc tctttacaaa
    11281 accttgcgca ataataagag ataaagcttg attcatacgc gtagcaatac aaaaactgga
    11341 agtaaaaaat attacaactt cttttagaat tgttgtcatt tgattcattg attcattctg
    11401 taactctgct acttcaagga tcatattgga tttaatttct tttttttctt ctgatgtttc
    11461 tccaagccaa cgtccaaaaa ttggtatata agtttgccaa tcactatctg tattaagatt
    11521 tttggctttt tgtgttctat cttttgcttt atcagcattc tctgctgctg tttcaatagc
    11581 tatagctatt tcactgattt ttttattaat aaatttttga atatattctt catcaaggtt
    11641 ttcaatattt tgcaaaaaat cttgatcttt ttgtgtgata agttctagca tcagttctcc
    11701 ttagtttgat taagtttttt gtataatttt ttagtgatat tacaattttc aaattcttca
    11761 attgctgttt ctacttcttg agaactttgc tctctcattt ggttatcttt tttgatttgt
    11821 tgtatagttg ctaaagtttc gttttttaca atatgataag catcattcaa tgcaaaccaa
    11881 gttttggcaa ttttgtattg tgctatcaaa tttttttgag ttacaatttg tatttgtaaa
    11941 ttgccaattt tggaattgct tctccactta tccatataaa aaatagctat agtgctcaat
    12001 acagcaccac cagccgctga aatacataaa gaaagggcat cccctattgt ttcatcggta
    12061 aaagggatag gtagtgacaa aaatacatta aatccaggta ttgacagcag aaacttgtgg
    12121 atcatttcac ttcctaacat tgaaattgca gaaatcatcc cgctaacaaa aattttcgat
    12181 gcttcaaagt aaatttcatc ttttggtata tttttaggtg gattaataat gatttttaca
    12241 gcttgatata gagaagtaaa gcctgcacgt atgatttgca ctattttttt taaagttgta
    12301 aaaatagtgt taataataaa aaccaacaaa ttagaaaaaa atgcttgaat tcctgcttct
    12361 aaagaacctt tgaatatatc cttccatttt gcctttatct tttcccaaac tttttccatt
    12421 ctgcgtgcaa atcgtttaaa aatttcttta atattttctt ttccaaactc tctaaaggtg
    12481 gtttttaatt caataacaac agcttcaata aaatctttta agacaactcc aaaggcagaa
    12541 taaacaaaga ttttcattga atctttaaca cctgtactta aaacttcatt agaatatttg
    12601 acaatttttt cttttataac tttctttttt aggtttgatt tggctgtatt gtaaattttt
    12661 tcagcttttt ttcatcgatt ccatattttt caaaattggt ttttcctgtt tttagatcaa
    12721 tttctttacc ccactccata agatctctat cacctttaga agcattagca cttgcatcaa
    12781 gccacttaag attgtcaggg tgatttgcta tttctgccct aattgcatca tctaaaaata
    12841 aatgcatatt aggatctcta tcaatttcct ttaaagaaat aacatgatct agttgcgctt
    12901 tattctttcc agcacccctt tccatttctt cacctgtgta ttcactacgt acaatttttg
    12961 gaaaattatc tcttatatta tcttttattt tatcatagtt tgaatctcgt ttatagcctt
    13021 gttgatattt tgtaagcttt tgtaaatctt cttctgttgc tacaatacct ttttcaaagt
    13081 tatgtagtgt tgttacattc ccaccatctt ttgcatttaa gattgttgaa gctagtccaa
    13141 aatgccctgt cacagcatcc attgcatttt tagtgcattg ttcaaaaagt gtttgggttt
    13201 gctgttcggg taatttttcc attaaatctt caagttcttt aagtgaattt tccaaacctt
    13261 tatcaatttc tattcttaga cattcttttt tagataaatt ttccaactct ttttctaaat
    13321 ccgcataatt ggctttaaat ccaattcttc taaatgtata taattattca tattttaata
    13381 attccttgtt tttaattttt gtattttatc aaatcccccc ccccagtcca agggggaagt
    13441 gaaattttta agttttacgc catagcacta gtgctaaaat tgtgattaaa tatatagcac
    13501 aaaatattat attataagga taaggttgca tagaaagaaa aataagtatc gctatgccaa
    13561 caaaaaccat aaacactata aaatacaaac tacacatcaa cactatagca acaaatccgg
    13621 ctataagact taaaattcca agcattattc ccattgttta ccccacatag gagaactcca
    13681 cacagaagga aaaatatact gaggaaaagt ttgaaatttt gtttgcagat aaaatctctg
    13741 tgtttttctc tccatgcttt cgcttatcat ttttacaacc gctaagtcat ttttttcgct
    13801 ttgtgtttcc aaaaaagcac tcaagcattc aaatttttta gcatagtcga tcacttttat
    13861 catttgatct ttataagatg ataaaagaaa ttctgtttta tgattatttt tagaggtaaa
    13921 attttgctca aattctaaaa attccttaga attaaaatat tttgaaaagc cgctataaca
    13981 ctccatgcat tcacaaagaa attcttgaat ttgatttttc ttttgttcga cttcaagctc
    14041 tcttttgagt ttgtattctt cgatattgat catatcttta cagcttggaa caatagcatg
    14101 tgtatcaaat tttctttctg gcttggataa tttttcgtat aattttttta tgccatatcc
    14161 tgtagctgta agagctatac taccaaatgc gatttgtttt aacattttct ctccttgttt
    14221 taaaataaca aagaaagtat aaaacaccct tgcgacaggt tgtatcgtaa aaaataactt
    14281 taaaatatta aaaacttatt ttattaaagc tagcctgtaa attcagtagt ttcatagcct
    14341 ataggtttat ctacaaaaca agatttttct tttaaaaata caacttctat agttccaaca
    14401 ggtccatttc tattttttcc aacaataatt tcagcatttt cttgcatagg atttggtata
    14461 aaaagccttt gataagcttt gccttcagct ttagctttat tttctctttc tttttcttct
    14521 tgttctctat aaacctcatc gcgatataca aacaaaatag catccgcatc ttgctctata
    14581 gctccacttt ctcgcaaatc actcatcaaa ggacgcttat ttgccctttg ctctaagcca
    14641 cgattaagtt gtgaaagtgc gataataggc atatcaagct ccctagccaa aagcttaagt
    14701 cctcttgaaa tttcactaac ttgcaaatgt ctatcattaa aatttgaatt actcatcata
    14761 agccctatat agtcaatcac acaaagtcct atactttcat cttgagattt taaacgcctt
    14821 aaaatagccc ttacatcagc aatagttgca taaccactat cgtaaatata taatttcttt
    14881 tgactataat cattgcaagc atctcctaaa cgctcccatt catcatcgtt taaatctgca
    14941 gttaaaattt tttgcaaagg aatagaagtt ttagaagata gcattctttg catgatttga
    15001 gttgcaggca tttcaagaga aaataaagcc acgccttttt tttgtcttaa aaccttatca
    15061 atgaaattta aacaaagagt tgtctttccc atacctggac gcgcggcgat tattataagt
    15121 tcaccccctt taaagccttt tgtcatttta tttagacctt caaaacctgt atcaagccct
    15181 ataatacctt tattttctaa agttttttgc tttttaaatt cttcaaaaag ttctgatatt
    15241 actatatcaa catctttaat atctctagaa ttcacacgat ttgtaatgct aaaaatttct
    15301 ttaccaattt catctgcgat ttcacttaca gcacgatctt cattgatacg agttggcaaa
    15361 agatgtgcaa aactcaagag ttgtcttttt acggactttt cgtgaagttc atttacataa
    15421 gcaggcaaat ctatcataga aggagtggca agaatttctg ctaaaatttg ctcatctatt
    15481 tttttatgtt ttcttaaaaa acttacagaa atgggctctt tgttattact acaagctata
    15541 accgctttaa aaatatcttg gtgagcttta agactaaaat cttttgggct aatatcacct
    15601 gctatactag cataagcttc ttcactcatg atacaactgc ttaaaatagc tcgttctaaa
    15661 tccaagtcat aatactcttg ctgcactaaa tttccttata aatataaatt aattctaaaa
    15721 attctatcta aaaaaactta aattataaaa cttaattttt ttataaatat ttaatgtaat
    15781 attagttaca attataaatg taatttaatt acaaacaaca aacatttcaa ggagaacatt
    15841 tgaaaaaata tttattttcc tgtgttttag cctccatttt aacccaatca gctacggctg
    15901 tagaatttca agaaggtttt agtggaaatt taagcatagg tgtgggtgca agggatatta
    15961 aaagtaatat ttcaaccttg gcaaacagtg attatctaag cagttacaat gctgataatt
    16021 cagactcctc tttcattcct tttatcggtg cagaacttta ctatggtaat cttatagata
    16081 atgatagaat ttttattaaa aactacaatg gaagagatat cagcggtata gctttaggct
    16141 acgaaagagc ttatttagag cgttttagca cttctttttc tgtaatttcc tctttaagag
    16201 aaaaagctta tgcaaatcct tatgcaatag gaaatagaga agaaactgat gttgatagat
    16261 atggttttaa aatctctcaa ctttatgaaa gtgattttgg gaaatttacc acttcatatt
    16321 tatttagcaa aaacaaatat gataaagaca ctatcgcaca aagctcttta aaaagggagg
    16381 gatattatca cgaaattgaa ttaaactata attatagctt attaaaccta gggttaaatt
    16441 atgattacaa tgatgcagac ggaaaagctc aaagctattc aagatatggt tttagcatag
    16501 gaacaaattt ggcttttgct aatgattaca tcttcactcc aaatttaaat cttagcaaat
    16561 atgaagcagt aggaactgat cctatcttcc acaaaaaaca agatggtaat atagttaagc
    16621 ttaatttaaa agttgttaaa aatcaatttt tgggttataa cggactttat ggttttgcaa
    16681 attatggcat agaaaaaaga aatagcgata taggatttta tgatgaaacc tatcaaatta
    16741 tcctaactgg tataggatat aaattctaaa aattataaaa aagctccttt gataaaattt
    16801 aaaaaagatc tatctcctat aaagatagat ctttaaaaat tcttttaaga aaaatccaag
    16861 ctaaaatcaa aacacaaaat tcagcaaaaa atggacttag ccatactcca tttaaaccca
    16921 taaaacaaga taaaaacaaa agaaaaaaca aaggtataaa taaattttgc gccaaactta
    16981 aaaccaaaga aaagcttgcc ttattaaaag ctgtcaaaaa agaaccactt agaacattaa
    17041 accatgcaaa aaaataatta aaagcaaaaa gcatcaaagc tgtataagca aaagttttaa
    17101 attcttgatt gttttctttt gtaaaaagcg tgattaaatt ttctccaaat atcaatataa
    17161 gcactataga gaataaagat aaaaatcccc ctgcaaaaaa taccactttt ataatagctt
    17221 tgattcttga aaaatctttt ttagcatagt tgtaactaag cgcaggctgc attgcatcac
    17281 ctatagcaat aataagcatt ataataaaac tatcaatata taaaactata gaaaaggctg
    17341 ccacggcttg agtatcagaa atttttaata aaacaaaatt tgcaaaaata ctatacaaag
    17401 atcctgaaat attgccaaaa aactcactgc ttccgttata aagaatattt ttaaaaattt
    17461 ttaaattcat atataggctc gaaattttaa gctctaaatt ttgaaacaag aaaggaaaaa
    17521 ttccaaaaat accacctaaa acaagtccca aacaagttgc aagagcagct gaaaataagc
    17581 cccagcccaa ctcgactata aaaatataat caagcactat attgcttaat gctataatca
    17641 cattcattac catactataa gcagtttttc cgcaaattct taaataatta tccaaagcaa
    17701 aagaaagcat agtaaagggt gcaaacaaag caaaaacaaa catacattct ttagtcatcg
    17761 ttttaatctc atcgctaaca tttaaacaat caatcaaaac aggtcctaaa aaatactcca
    17821 aaattccgat aaaacaagag attataaaga taatcaacat acttgagcta aatatctttc
    17881 tagctaaatt cttcttgcct aaacctaaat gcatagaaat ttgcactgct gatcctatgg
    17941 ctatcatatc agccaaagca aaagacatca tgataaaggg aataatcaag gctagtgccg
    18001 ctaaagcatc acttcctaga tattttccaa caaaaattcc atcaactata taataaaaag
    18061 aaataaaagc catgcttata acatttggca cggcacattt tacaaaaagc ctaaaagggc
    18121 ttaaggtgct aaaaatactt gacataataa tccttaaaat atttaaaatt aaaaatattt
    18181 taaaccgcta ataaaatgcc aaaagtccta gtatgtaaga atttaaataa agtaatttcg
    18241 caataagttt attaatattt attttatttt gcatatgaat tttctagatt aaactaaaat
    18301 aaaaatttag cccaaaggct aaattttaaa gcacagaaag aattttcaca gcgtcattta
    18361 accctgtaac tatacttgct ccatttttag tagcaatatc tcctgctaca aagatgcctt
    18421 taacattgct ttgtttgttt tcatccatta aaggcacgcc tttatcatca acattaatcc
    18481 cacatttttg taaaaaatca agtggagtag aaccaccaat agcataaatg attctatcat
    18541 aaatatcgct tgtaccatcg gtaaaattta ctttagcttt gccattatca tcttctactt
    18601 cattaatgtc aattcctagt tttaactcta ccttacccga atttccagct tcgtgaatat
    18661 ctttaagatt tatatcattt aatcttgtaa attctttttt acgataacaa agactaactt
    18721 gatttgaatt tgccaaatcc acagcgtatt ctgctgctga atttccgcca cctacaacaa
    18781 gaattttttc atttcccaaa actgaattgg cattaaaatt aatgattttt gttaaagtca
    18841 taggaagttt gtaatcaggt ttattaggtt tacccattct acctatagca acaataatgt
    18901 ttttacactc ataaacacct ttagctgtac ttactaaaaa aactccattt tcatttttaa
    18961 cgctctcaac ttcagaacca aattcaactt ctatattgtg ctcttttaaa gcgttttgaa
    19021 aagtttctat agtgctttct ttggtgccat cttcaaaagg aacatgtccg tgattggttc
    19081 cttcgcatcc cttataagct ttatctactc ttttgccatc cttataaaat tgcattaaag
    19141 tttgacaaat gttatttgat ttttctagta tcaaaacttc tttgttttta agcttggctt
    19201 caactgcaca gcctatccct gttggacctg cacctactac aattaaatct atttttttca
    19261 tttatattta cctttcaatt ctaaattttt ttgtataatt tatcaagttt tttgtaaata
    19321 aaggattaaa aatgcgaaat ttgcttgaaa atattaagaa aaattctcaa aaactactta
    19381 acttaacacc caaagataaa gaaaaaatta ttctaaaatt agctcaaatt ttaagagaaa
    19441 atttcaaaat tatcctagaa gcaaataaaa aagatatggc aaatttcaca aaaagcggag
    19501 caatgaaaga taggcttttg ttagatgaaa aacgtatttt agctctttgc gaaggcctag
    19561 aaaaaatcgc ttacatcgaa gatcctatag gcaaaatttc taaaggctgg aaaaattatg
    19621 cgggtttgag catacaaaag atgagtattc ctttaggact catttgtgtt atttacgaag
    19681 caaggcctag tcttagcgct gaaatcgcag ctttaatgat aaaaagttcc aatgcttgtg
    19741 tatttaaagg cggaagtgaa gcaaaattta caaatgaggc tatatttact cttgttaata
    19801 aagtacttaa ggaatttgat ttgcaagatt gttttgctat gtttacccaa agagatgaaa
    19861 tcttgcaaat tctagccttt gatgatttaa tcgatgtgat catacctcgc ggaagttcaa
    19921 atatgataca agaaattgca aacaatacca aaattcctct cattaagcaa aataaaggct
    19981 tgtgtcatgc ttttgtagat caaagtgcta acttagatat ggctttaaaa ataatcctta
    20041 atgcaaagtg tcaaagagta agtgtttgta acgctttaga aacgctttta atccatgaaa
    20101 aaattgctaa aaattttata agtcttttaa tacctgaatt tgaaaaattt aaggtaaaaa
    20161 ttcacgccca tgaaaatgct ttggcttatt ttaacaactc aaatttaaaa atttttaaag
    20221 caaatgaaaa tacctttgat acagaatggc ttgattttgc tttaagtgta aaattagtaa
    20281 aagattgcga tgaagctata gagcatatca ataaacacag ctccttgcat tctgaaacca
    20341 ttatctcaaa tgatgcttca aatatcgcta aatttcaacg ccttataaac tcatcttgta
    20401 tttatgctaa tgcttcaacg cgttttagcg atggaggaga atttggcttt ggtggagaag
    20461 ttggaatttc aaccagcaaa ttgcatgcaa gaggtcctat ggggattgaa gatatttgca
    20521 cttataaata tataatcaat ggggaaggac aaattcgaga gtgaataaaa tagaaatact
    20581 aaagcaacac cttaaagaaa ttgctaaatt aaattcaagc gaacaagttt ggcaaatgcc
    20641 ttttttgcgg ctttaggcgt aggtatagtt ttagggctta gtgtattttt tggaaaatta
    20701 aactatggac tcattgccat gataggagct ttgtcttttt tatatgttcc aaacactcct
    20761 ttatatcata gaatggctgt tgtgatgtgc tgttcttttg gcatagtttc tagttttttc
    20821 ttaggaattt taactcattt tttgcctgca atttttgcct tcatccctat aggaattatg
    20881 gccatgggaa gttctatttt atttagatac tataacattg gtgcacctgg atattttttc
    20941 tttgtatttt cttgtgtttt aggagcctat tctccttttg aagctaagga ttttatcttt
    21001 ttagtaggtc ttgtttttct tggagcaatg gtagctaatt taatggcttt gttatattct
    21061 atcgttgtga tttatggatt taaaaatgct ttacctagcg aaattccacc tagagaatac
    21121 ataggttttg atgcagtttt tgtggattct ttgatcatgg gttcttttgt ggctttttct
    21181 atatttatag gaactttttt agaacttgaa agaagttatt ggatagccat ttcttgcaca
    21241 gctattatgc aaggtgtaac tttaaattct atatggatta aacaaattca acgcatcata
    21301 ggaacggcct taggagtatg ttttgcatgg tggcttttat ctaaacaatt tcacgatata
    21361 gagcttattt tacttatgat gtctttgttt tttataggac aatttttagt caatcgaaac
    21421 tatgctttag ctatgatttt ctttactcct tatgctactt atctttcgga agcagctaat
    21481 tttatgagtg aaaatgcaga taaattaata ctcgctcgtt taattgatgt tgtaatagga
    21541 agcattttag ggcttttagg tggttttgtg atttacaaac cttatctaag agtgcatttt
    21601 gaacgcattg caaaatacat ctttaggata aaacaaaaag cttaaaagcc aaataaagca
    21661 caagcattat cccctaaaat ttactcttgt tcttttttag atacgacaac ttcattaaaa
    21721 gccactagag ccgatgaaaa attaatattt gcttcaaaat ttgtatgtgg ccaatcgctt
    21781 ccaaaaacaa aattgctaag tggaaaatgt tcttttaaaa tttcatatat tttctttgca
    21841 aattttacag cttgttcatt attagcatag tctatttttg ctctataaaa accgctaatt
    21901 ttaaaaaata ttctagagtt ttttaagcaa attaaatcct ctaaatttgt taagtttgca
    21961 ttagctcttg ctaaatgatc gataacaata ttacaaccat aaggaattaa attttcaaca
    22021 atatcaacaa gattattatc taaatctctt tgaatttcta tttgcatttt aagcttactt
    22081 aaattttcaa aaaattgagt ccaaaccata cttttaaaat ttggtaattc tttgccaatt
    22141 aaatttaatc taactccaca agcttttctt tcttttagtt ttttaagctc atcaaattta
    22201 atattttcat caaccacaac tatagctttt atattttcat ctttttctat actctgaagc
    22261 aaaaattcat tatcaatacc taaaaaactt ggctgaacta aaaccccttt attaaaatca
    22321 taatgatcta aatttgcttt ataatcttta aaactagcgt cataatcagg cttatatctt
    22381 gcatttgcaa ccgtatttaa ctttttcaaa aatatatgtg cgtgagtatc aatcttcatt
    22441 aaattatcct tataaaataa aactcattat aatagtagct aaaatcgccg ctataaatcc
    22501 tataggcaca gctttaataa gtaaatcttt aaataatttt tccttatatt tatcagggca
    22561 agatcctaaa attagacttc ctccagaaga aaaaggagaa atagcagaag cttgagcccc
    22621 tacaacaata caagaaaaaa gcaatgcctc gcttaatcca ctgcttgcag caatgcttgg
    22681 aactatagga aaaagcgctg gagtaaccac acccaaagta cttgaaaaaa gcgacataaa
    22741 agctgcaata gcacacatta ttaacggaat aaaaatcaca ttgatctcat tttctacaag
    22801 atctgaaaat aattttatag cccctgcttc aactgctatg ctaattaaca tccctactcc
    22861 acaaatcatt atcaaggttc cccaaggaat taaagcaaca acttgtttct catcggccaa
    22921 ttttaaaaat aaagcaatgg caacaaaaat catggctatc atggctatat ctatttttta
    22981 ttaaaataac taattgtctc attatgtgga aaaataatat ttagcacagg aaagattaaa
    23041 acaacaacaa tcatcataaa catgagaatt aaagtagttt tttgtttata atcaaatgga
    23101 tcaggttttg aaataacact aatttttata ttatttttaa aagcattaaa cacaaaaaaa
    23161 gataatacca caataggcaa gattatagta aaagcaaaaa taatactaga atttgcaaaa
    23221 gcttcatttg cttcaatgcc tgaattttcc atcaatcctc gaaaaataat cccgctttga
    23281 gaagttataa aatttgctcc tcccaaagca ccataattta tagccatagc tccagcaatt
    23341 ttgcttaaac cgattttatc gcaaagtaaa aaagtaagtg gtgccataaa agctaaaact
    23401 gtataaaaac ctgctcctaa agcagctata atagcactaa ccacaaaaat aacaaaagga
    23461 agcaaataag gatgattagc aaaacgatac atcaaatgtc cagctaattt ttcaagagtt
    23521 ccatttacgg ttgcaaaatt ataaaacaat gagacagcaa aaataacaaa aaatatagaa
    23581 ataggccaaa aagctatgat ttttttagga gctaaatcca taaaaaaagc tcctataata
    23641 taagcaaaaa tcatagcaaa aattccaaca ttatgtctag taatatagcc caaaataata
    23701 gccactataa tactagagat gattaaaaaa accattatca tcctttaaaa tattataggg
    23761 cttataatat caaaaaatat atttttcaaa gcataaaaac aaaatctaaa tttaaaaaat
    23821 atctatttag caacaaattt actcatctta tgaaattttt tataaaatat ccacatccag
    23881 agcaagcaaa gcaaagcttc ctagccaatg cgacccaaga taatcatctt ctatatgagc
    23941 tatagcttta tcaaaatgct ctgtagcatt gtttcttaaa agaattttta aattttcatc
    24001 gcaaaaattt gaaagtattt taaaacacca agcacgactt aaatttaacc catctaaatg
    24061 tgctatttta ccatcgctcc tatcactcac actcacaggg gtaaataaag ttgcaggctc
    24121 ttttgcttct aaatttggca aatatgcttt aaaaaatttt acaaaatcat ttttatgtaa
    24181 aacagcactt aaaagcaccg cttccatcaa aacaggagat aaaaactcat ctccacaagg
    24241 ctctaaagct tgcatatttt tatcatttaa aaaccacttt ttagcacttt ggatgatgca
    24301 atactccaat tcttgatctt ttttaaatct tgcatattct aaagcaaaat acaaagcaaa
    24361 agagctatta aaatgggttc caactcgtat aggataatcc atcttaggta aaaactcctt
    24421 aaattcttta acaaagaaat cagctatgcc ttctaaattt ttagcccaaa tttcagcttt
    24481 gtcattttct ttagcaagta aatttatctc caaagtcagt tttaaaaacc atccccatcc
    24541 ataaggtctt tcaaaacctt tgtgtgcagg gttttgaaga tatttaagct ctccttctgc
    24601 tttttctttg ctaaattgag aatctagagc tttgatgatt tcatcctttg gagcaaaatg
    24661 agaaaaatct tttaaaattt tcaccaaaag ccagtgagaa tgcacgctag aatgccaatc
    24721 ataagaacca taaaatatag gatacataag ttttggcggt ttaatatcat tgatatcatt
    24781 aaaagaatgt gtaattttat ttggcaattc tctaaaaata ttttctagtg caataaagct
    24841 aaattgtttt ataaattttt ccattgtttc tccttaaaat ctaaaagcta aaaaatacat
    24901 taaaaagata ttagccacaa gcaaaacaag tcctgacata aactgggctt taattacgcc
    24961 atttttatca tccaaattta aaagtgccgc aggaactata ttaaaatttg cagccatagg
    25021 cgtcattaaa gttccgcaaa atccactaag cattccaatc gcacctataa tagcaggatt
    25081 tgcatgcatt tgtatgatta aaatcggcaa agcaatagca gcagtaatca caggaaaagc
    25141 tgcaaaagca ttgcccatta ctatagtaaa aagcgccata gcgatacaat acacagctac
    25201 tgcaataaaa gcattatcta aactaatata actagataaa agtttagata cttgatcgcc
    25261 cattcctgta gaaacaaaaa ctaccccaag tgtagccaaa atttgcggta aaagcgctgc
    25321 ccaactaatg tgatccatag tatgtgctgc atctttaaca gctcttttag gagaagcctt
    25381 aaacataaaa caagcaacta ctgaagaaat aattatacct ataatcaaag ccatcaatgt
    25441 agcattttta ttttcaaaaa aactcaaata gggaaataaa aaagtcccaa taagtgtaat
    25501 caaaggaacc attaaagcag gaataaaaag tttattttta taaatatttg catgttttat
    25561 ctcatattct ttttcttctt tgctaacttc gatctttgct ggttttaata aattaaatcc
    25621 tgctataagt gctagtaaaa tcactataca acccatcaca aaatgaggca aaactcctgc
    25681 tagtaaaaaa gtaaaactat aacttatcca aaataccccg ccgcttattc ttgattttat
    25741 atctttagct tgattagaaa aacttaaaat tccaaaaact aaaaataaaa ttcctacaat
    25801 ataataaagt aaatcaagac ttatcatcac tcaacccttt ataagttttt tccaatcttt
    25861 tatcaaataa ataaagtcta gagcaatgga taattaaagc caaaattcca gttggtatag
    25921 cccaaactga taaatgcaat ggctcaacaa taataccatt gctctcataa aaagctttaa
    25981 taaataaaat agaatgcacg gctataaaaa tatcctctcc aaaaaataca gcaacattat
    26041 ccgttcccgc agaaaaagct ttgatttttt gactatcttt atgtgttaag tttttaaatt
    26101 taagcttagc tgcagcttct gccatagggg ctattaaagg tcttatcatc tgtgcatgtc
    26161 cgcctaaaga taaaagccct aaagctgcag taacttgtct aaaaacaaaa taacacatta
    26221 aaattcgtcc tgtactggca acttttattt tggatattaa atttttagcc tgctctctta
    26281 agcctttgcg ttccaaaaca gcaagtaaag gtaaaataag ccaaattata gcaacatagc
    26341 gattatctac aaaagatttt cctatatcac taacaacctt aacaaaatca aaacctgaaa
    26401 caagtccagc ataaattcca actgaagtta ccactaaaaa ggggttaatc tttaaagcaa
    26461 aacctaaaac aatcaaaggt atagaagcaa gaagtaacca ttccatcaac catctccaca
    26521 atatgaatta gaaatattat agaaatttta aattgaagaa aagtttaaaa aaatattttt
    26581 aagaatggaa tgagaaatta agtaacaaaa taaattttat ataaatttaa aaagccttgg
    26641 aatagtccaa aagctttttt tgtattattt gttcgctctt tctatatact caccacgcac
    26701 agtatcaacg cgtataactt caccttctaa cacatgaaaa ggaatttgca ctactgcgcc
    26761 tgtttccaat gtagccggtt ttttatttga tccttgagta tcacccttaa aatttggagc
    26821 tgtttcgatg attttgagtt caacaacttg tggaacttct acgccgatag ctttaccatt
    26881 atggaaaagc acatctacca tcataccatc aagcatccat tttttcgcct cacctacatc
    26941 atcatcacta atagctactt gttcatatgt ttgcgtatcc ataaattggc aattttcacc
    27001 atcatcataa agatactgca tagttttatc ttctaaattt ggagcttcac atttatcacc
    27061 tgcatggaaa gttttttcaa gtactttacc atcaataaaa gatttgattt taatacgcac
    27121 aaaagcagga cctttgcctg gttttacatg ctgatactca actattttaa aaggaattcc
    27181 atcgatttct attttaagtc ccttttttaa atcacccatt gaataagatg ccataaattt
    27241 cctttgttaa aaaataaaaa acaattttat caaattttga ttgatatcac aataaaatta
    27301 ttttatttga tgaaaaaata agtaaaatta cgttaaaatc caaatttaaa gcatagtaaa
    27361 tgctcgcttc tttttaggag aggaaagtcc gagctgctaa agacaaacat tccatctaac
    27421 agatggctag ggtaacctaa gggatagtgc aacagaaaga aaactaccac gcaagtggaa
    27481 aaggtgaaac ggcggggtaa aagcccacca gcgattttgg taacaatttc ggctatgtaa
    27541 acccaatgtg cagcaagaag ggatggttag cgtctttgtt ttaacccttc gcttgatttt
    27601 gtttgcaaaa acaaaactag ataaatgagc attcaagaca gaactcggct tatcgctatg
    27661 cttttttaag atttaaaata tgtcaacgct ttttgaaatt tttgaatttc aacagctttt
    27721 gtttttttct tttgttcaat cagtataaca gcttcttgca aaagagcttg aacttgataa
    27781 aatacatcat ttgcattttc ttttaaaaaa tcttctgaag gcgattcttt ggctaaattt
    27841 ttaataaaag ctttcatatc aagttcatca agtaaatttt caagtttatt gacatcttct
    27901 tggattaatg caagtttaaa atcactgagc cactgtttca ttgttatgca cttctctcca
    27961 agcttctagc aaacctttgg ttacatttat aacttcattg attctatctt cgttattttc
    28021 taaatttgcc aaagataaaa gttgaatttc tcttgtataa agcccgctta aataatgtgc
    28081 cacttctccg cctttttcat agtttaaagt attaataagc tctataaaaa tagccgtggt
    28141 tctttttaca aaatacactc tttgttctat atcttcattt cttatggcta ctttagctct
    28201 tgcacaaaaa cgcaaaattc cctcataaag catttcaata agtttttgcg gggactctat
    28261 ccccacttga ttttgagaat aagcattata agctaaatta ttttgcatct tttttatcct
    28321 taattattag aattgtttgc cgcattaatc atattagtca cagtatttag ctgttgattg
    28381 agtttattta aaatactctc atattgcaac cattgattcg ccattgtatc atatcttgta
    28441 tcaatcatag cctgagtcga gtctttagag gtatttaatg atttaatatc atttgtcaaa
    28501 ctctcatcat attttgtaat tgaaccatct tttccagtca tctcttgcaa cgtggctttt
    28561 aattttgaaa aaataccttt accttctata ggcttagagg ttatatttac gtcagacaaa
    28621 cctaattcct taagaatggt agcatctcct ttgattgaaa aatccgagct accatctcca
    28681 ctaaaattca acctaaaccc tgtaacattg ttttgattat aggattcaac cttaactttt
    28741 aagccttcaa tacctttact gtttatatga ttagctaaat tttgaagcaa ttcttcctct
    28801 gttttccctg ttaatttaaa attagtacca tcagaatttt tagacaaatc atatgtttga
    28861 ttattaaaaa ctatagtaaa atctcctggt ttaaattcta aaccattagt attacctcca
    28921 ttggaattaa gatatttact taaacttcct gtcttaatta cctctcctgt gtgattaatg
    28981 tcttcgtatt tagtaatatt tgaaaaaaaa ctttcagtag agtctggatc ttctttaact
    29041 ttttgttcaa atttagaaga atcaaaactc aaagtgcctg catcatttaa acttaagcca
    29101 aaatcctgca tagaaagcat aaccttagtg tttactttat taccatttgc atcttcagta
    29161 gttccatcaa caacttgaga atcaaacaaa tcagcaagaa tgcttgagcg tattgaattt
    29221 acttcactga tgccttgtaa agttcctttt gttccagttt cactattata gtcagttgca
    29281 gcattaagat tggttactaa atcattataa gcatccacca aatcttgcat ggcttttgtc
    29341 acaccttcaa aatcttgctg tacatcaaaa ttaatttcac ctgttttatt taaagttaaa
    29401 gtcattccta caccaagatc ggtaacagta ttacttgatc taaacatctt aataccatca
    29461 agtgtgaatt ctgcattttg cgcagtttgg atatgcaaag aagcatcctt aataccataa
    29521 ccttttttat ccttagctgg atcaatagtc tgagtcgttt tatctaattc ccatccaaga
    29581 tttgaaaata ttttttctgc ctctggatca ctttgatact gaccctgcgc atcttttttt
    29641 ccagcataga aacttatcgc actgtcttcg cctgtttctt tactggttaa agttaagcgg
    29701 taaggagtgc ctttctctcc tgtgtttaca atcttagcga caatctctcc tccactagct
    29761 tcattaattt tatcagctaa atctctatag gttgtgtttt tatctaccgt aacagtatat
    29821 tctttgccat ttgaaaaaaa agtaagatcg gtggttccag ttaaatttgc attaataaaa
    29881 ccactgtcat ttgctaatcc tttgctttga tacacatctt tttgtgcaag ttgagtaaca
    29941 ttgatattca tgctttgtaa agcaacaccc gaattaactg taagacttgc tggaggatta
    30001 tcgctaatac ttcctacaac ttttcttttc gcaaaaaccg tagcatcggc taatgatgaa
    30061 acagccgtct gaaaacttag taatttagtt ttgatttctg ttaaatcttt ttgtttggtt
    30121 gtattttctt caattttttt agtataagga tcaatacgag ctttttgctc tgcttctttt
    30181 aatttatcta tagtatcttg agttaaaacc ccagaaccaa atcctaaact agatagacta
    30241 ccaaatgcca tttttaactc tccttatcaa atatcattcc tatcacatcc ctaaaatact
    30301 cagctaatct catagcttct tcactaggaa tttgacggat ttcccttcca gtgctttttt
    30361 cagtcacgct aatatacata gaaccgattt tatcactata accaaaacga acattggtat
    30421 ctagagaatc catttgctca tttaactttt ttgtaatatc agccaacttt tcactcacac
    30481 ctcgttgctg tccatcatcg ccttcttggc cttgacttct atcggtttga atgtttaaac
    30541 tagcctgtgt ctcacttgtt ctttggctaa tgtttgccaa agctgtatcc atttgcccat
    30601 ttgccttcga tatttccatt ttaaaatcct ttttaaaatt tcctattgct agttaaaagc
    30661 ttatatcgac aaatttataa atttatgaac acctataaag aaaattttat ttttcaataa
    30721 taaaaaaata ataagcaaaa actgtgccaa aattttaaaa taaatctcaa ttatcttaaa
    30781 aaatttcaaa tttattaaaa agatctggat tattttctaa aatattacgc aagatcaaat
    30841 cttctatcac gcttttagtg caatctgttt gcttaggcca agctcttaaa taaccctcag
    30901 cttcaccttt agcacttgca tctactccaa gtctttcttc tttgataaaa atatctcttt
    30961 tagcatctat attatttacc acacgccaaa caagcatata agaattttca agcttatttt
    31021 cagcatctaa aaatactaaa atcctaaaat gttttttaaa ttctaaaagt ttgtcaaaac
    31081 tttgttcgat tttttctttt ttatcaagca aaatacaaac tataggactt ttactttctt
    31141 tataaaattg ctttaaattt aaaagttcta ccttagtttt aaaaagttct agtaattttt
    31201 catcttctaa aatttcaagc tcttcaactt gtatttcttc gcaagcatca agtcctgctt
    31261 tacccccaaa acaagaatta ggtgaagcat gatctaattg atcacaaatt ccttctgaaa
    31321 ttaaaatttt ctttgtatta aaacgatcta acatataagg aattaaagca tcataatctt
    31381 tcaaagaagg tgcattttta tccacaaaaa ttgcatgctt aacaaaactc atttgcccta
    31441 ctccccaaaa tgcatgcata atttgttgcg catgagcggg atattttgca tcgatttttg
    31501 ctaagataag attatgaaag accccatttt caggcatatt gtaatcaatt aaatcaggta
    31561 ctgaagtttg aagcaagggt aaaaaaattc tttcggtacc aagccccatg atcttatctt
    31621 ctaaaggagg ctttcctaca accgttgctt gatagatcgc atctttttta gcataaattt
    31681 tttctacttt catcacagga aaaagttcag caggagtata aaaacccgta tgatctccaa
    31741 aaggaccttc gattttaaac tcttctaaat ccacataacc ttcaataacc acatcactat
    31801 cataaggtat aaaaatacca ttttcacaag gagtaatttt tgcaggagtt tttttaataa
    31861 aaccataaag taaaagttca aaaattccct taggtaaagg tgcttgagaa caccaaatat
    31921 aaagcggatc tccacctatg gctatactta caggcatttt tttaaaacca gcatttttgt
    31981 attcgtgata aaaatttgcc ccatctttat gaatttgcca atgcattaaa agttcatttt
    32041 tatcactcat ttgcaaacga tacattccaa gattattttg agttttatct aaattttgtg
    32101 tataaacttg ccccatggta ataaatttac ccgcatcatc ttcccaagtt tttagtatgg
    32161 gaagctcttc aagtgagttt aaaatttcat aatcatacaa ggctttattt tttttcagtc
    32221 ttttaggagg aatattttta aaacttaaca aattcataaa aaaatccatt tttgctttaa
    32281 aactcgtagg aatatgaagc ttggtgagtt ttgaaatttc ttcagccacc tcttcataat
    32341 cacgtccaaa agctaaattt aaagcctttt cattgcaaaa agtattcatc aaaacaggaa
    32401 atttatattg tttatttaat tttttatcta taggattttt aaataataaa gccttccctt
    32461 tttctccttt tttagcttct atataggcta aatgagcgat ttcaagatct acatctacag
    32521 gttcttcaat tacccttaaa agatcatttt cttttaaaat ttgaataaat tctttcatat
    32581 catactctca gcttttttta aaagttcttt agcaccttta gcaataaact ccttagccaa
    32641 actctctcca aaacctttaa aatcattctt tttaatcatt ctcttatctt ttaaaatttc
    32701 acttccatcg ggtagtccaa gtaccgcacg cacacaaatt tcatctccca agagctctgc
    32761 gttaatacct ataggaactt gacaacctcc ttctaaagta gcaataaatt ctctttcaat
    32821 gcttgtttca atcaaagcat tttcatcatt taaacatttt aaaagttcta aaattttttc
    32881 atcatttatg ctttctatac ctaaagctcc ttgagaagcc gcaggaataa gctcatcttt
    32941 gctaaattca taaacaaaat tcacttgctt atctaagttt aagcgtttaa ttcccgccat
    33001 tgccaaaata atcgcatcaa aatcattatt ttttaatttc tctatacgag aattgacatt
    33061 accacgcaaa gaaataatat ctaaatcagg tcttaataat aaaagctgca tcttgcgtct
    33121 aagactagta gtgcctattt ttgcaccttt tggtaaagaa agaaaatctt tataattttg
    33181 acttagcata gcatcattgc tttgctctct tttacttacc gctgccaaaa ctaaaccttg
    33241 aggaaaaaaa ctaggcacat cttttaaact atgcactgct aaatgtgctt cttttcttaa
    33301 catactttct tcaagttctt ttgtaaaaag tcctttacca ccaatttttg ccaaaggaga
    33361 atccagcaaa acatcgcctt ttgttttaaa accttctaaa agcacttcaa tttgatgtgt
    33421 attttttaaa atttgggcta catgctcact ttgccaaaga gccaattgac tttttcttgt
    33481 tgcgataata agcttcattt tctatcctct ataatttcaa catcaatgat ttcttcatta
    33541 gaattttgat actcttgctt ggtgtattga tattttgatt tagttattaa tttcaaagca
    33601 ataccaaaga aaaatacaaa aatcccaaaa acacttgtaa taatccctgg aaaaacaagt
    33661 aaaaaccctg cgataacaaa agaaaattgt gttaacatat cctttaggcc acccatttga
    33721 aactcaagca tatttttcca aaaaattccc aataaaaccg caccaaaaat catactcaaa
    33781 agtatgaaaa ataaaaaatt accaaaacca aaaaacacta taaaaagtat acttgcaata
    33841 atttcaagta caaataaagg acttaaactt aatttataat tcataacact ttctttttaa
    33901 gaatttccat aagttcatca gtttttataa gttcttttac caaatcttct ctttggataa
    33961 gctctatttc attattttct aatcccttgc caataactaa cgcataagga aaacccataa
    34021 gttcaaaatc attcatttta accccaaaac gctcatttct atcatcaagc aagacttcta
    34081 atccaagatt agttaaatcc tcataaagct tattggcaaa ttctaaagcc ttttcatctt
    34141 tgagatttga aacaataatt tcaagcacaa aaggagctaa agttttattc caaatacatc
    34201 ctttttcatc atgatttgct tcaatagcta cagccaacaa gcgtgaaaca cctatgccgt
    34261 aacatcccat ataaaaaggc tgacttttgc cattttcatc taagaaattt gcattcatcg
    34321 ctttggaata tttttgtcct agcttaaaaa tatgccctac ttctatacct ttactttgtt
    34381 ttaattttgc tccacattta acacagcaat ccccttcttt aacttcaatc aaatctttaa
    34441 aacgatcttt atttaaattt acaacatcaa taccgattaa atgataatct ttttcattcg
    34501 cacccataat catttgcttt tcgttttcaa gctcaaaatc tatataaaaa tctatatctt
    34561 ttaatcccac aaaacctata aaaccagcta ctaagccagc tttctccaat tcttcttcgc
    34621 tcgcatcgac tagttcaagg gcactgcaag cattttgagc cttgatttct tgcaaatcat
    34681 cacttcctct tataaaaaac acaactaatt tgctttcatt ttcataaata gcttttttta
    34741 ccactgcttt aatcgtataa aaagcattaa ttttaaaaaa ttgtgctaaa gaatctatag
    34801 ttttaatatt tggagtgtga aatttacttg cataatttgc ttcaggacgc tcatcttgac
    34861 aagttttttt agctcttttt gcagcttcaa cattagccgc ataatcacaa ttttcacaaa
    34921 ttaaaatatc atcttcccca ttttttgcca aaaccataaa ttccttagaa ccacttccac
    34981 caatagcccc actatcagct tcaactgctc taaaatcaag ccccattctt tgtaaaattt
    35041 gagaataagt tttatacata agctcaaact cacgccctaa atcttcttca ttagcatgaa
    35101 aactatatcc atctttcatt agaaattcac gacatcttaa aagcccaaat ctaggccttg
    35161 cttcatcacg aaatttaagt ccaatttgat ataaatgcaa aggaagttgt ttatagcttg
    35221 tgattttgtt ttttaccaaa gaaagcatag cttcttcatg tgttggacct aaaacaaatt
    35281 cattttcttt tctgtcttta aaacgcaaaa gttcttttcc aaaaacatta taacgcccac
    35341 tttcttgcca caaacttgca ggagtgataa aactaagatt tacttcttgt gctccagcct
    35401 tatccatttc ttctttaact atatttttaa tcttgtctaa aactcttttt cccaaaggca
    35461 agaaattata aagtccgcta ccaatttgtt ctacaaaacc cgcacgcgtt aaaaaaatat
    35521 gactaggtaa actcgcatct tttggcgctt cttttaaact tggtgcataa aatttagtaa
    35581 atctcatcat tattctccat atcaaattca catttatatt gattcaaacc ttcaagatta
    35641 ttttgcaaat caaaaacata acgcatagca ttaatcactg tatcgctttg cattttacct
    35701 tgtaaatgtt tcaaatttac agtaggcgtg tgtaaaaaag ccttaaaaac ttgatgaatc
    35761 aactttctag cctcttcttt atcagatttt ttcaaatatc ctttttttaa cgcaatttca
    35821 agttgtttat ctgcatattc tttagcttgc aagcgtatag ctttgataat aggcatcaaa
    35881 gccaaatcgt ttaaatacct aaaaaattca cttgtttcac gacctattat cccataagcc
    35941 atacgagctt cttgttctct tagtgctaaa tttttttgaa ccacaatttc aagatcatct
    36001 acagcaaaaa cagatatatt ttcattttca ttgatatcaa tatcccttgg aactgcaata
    36061 tcaaaaaaat accttttata agaaagttct tctactaaag aatttgtaat aatagcattt
    36121 ggtgcattgg tagctgagaa aaaaaactcg tattgattta aatatttttt taaattttct
    36181 aaactatcat attcgcttaa aacaccaagt ctctcacaca aatctttagc tttttgtaaa
    36241 tcacgattta aaataatcac cttagcaccc gcagcaatta aatgttttgc cgcaagttct
    36301 cccatctctc cagctccaat aacaacagct tttttttgcg ttaaatctgc aagttctttt
    36361 gcttttgcca cggcaacgct agctacagaa atagaatttt tagaaatttg agtttcattg
    36421 cgtaccttag cagcacattt aaaagcacta tgtaccgctc ttgaaagatg tactccacaa
    36481 aaattatttt ttacagcaaa agcaaaggca tcttttaatt gtcctgctat ctgagtttct
    36541 ccaaccacca aactatccaa agaacttgct acagaaaaaa gatggtggat tgctccacta
    36601 tcttcaaaaa tatcagcttt ttcaagtaaa atatctttat caacatcaca aagtaaagcc
    36661 aaagatttaa caataaactc cgcacaggcc atttttacaa aagcaacaat ttcaacacga
    36721 ttgcaagtgc ttataaccaa acattcttca atattttcat gagtgctaat gatttttaaa
    36781 aactcacttt ttttagcttc attggaaaag cttaactttt cccttaaggc aatatctgta
    36841 tttttatgag taaaagatat acaataatac attaaaattc cctatctatc atagctttaa
    36901 taatatcatt aagcttgtta ttatcatatt tttcaattgc ttttctagcc ttttttgcat
    36961 aagttttagc ttctaaaata gctttttcta aagctttttg ttcttcaaat ttagttttta
    37021 gccattcttt ttcattttca tttaaatctt ttttaaataa agtctgcaaa tatatcctat
    37081 cttgttcttg taaattttca taaagataaa tataaggcaa ggtagtttta ccctctttaa
    37141 aatcattcat agcaggtttt ccaagaattt tttcatcact cttaatatct aaaatatcat
    37201 caatcatctg aaaagcaagt cctaaatttt taccatattc tgcaaaatct ttttcatata
    37261 atccagccaa aatagctccg catctagcac ttgcttcaat caaaacagct gttttattat
    37321 agatcatttt caaataagct tctttattga tattaaattt ctctcccaaa tcaacatcca
    37381 taagttcacc tatagcaagc tttacaacag catctgaaat aatacttgca aatctagcat
    37441 ccattttgct taattcataa aaggcttttg aatacaaaat atcgcccaac ataagagcat
    37501 tttttgtacc aaattcagca ttaacagatc ttgctccacg ccttaattca ctctcatcga
    37561 taatatcatc atgtaataaa ctagcaagat gtatcaattc tatagccgca caaattttaa
    37621 aagcaatctc actctcatct gcgatagcta ataataattt agagcgtaat ttctttcctg
    37681 attttacatt tgaaagcata tttaaaatag gttcatagcc aagttcttgt aaaaactgtt
    37741 ttattaattc atctattttt tgcactatct tttccttgtt aattgctatt attattttct
    37801 ttgcttgtta atggttttac ctgaggttcg ttaaaattaa tcataggaac aacctgatta
    37861 ttttgcggtg gattttgtaa agcttttttt ctcggatcta aaaattctac cattaagcga
    37921 gattccttat cttctatata aaccgtaaaa gttgctaaac ctttattata accactaaat
    37981 tctaaaataa gtcttgctct atcaatgtgt ggattggtat aatcaggtat taaagtttga
    38041 gttacccaat ctaaatttct tcttaaactc atcacaaatt gacgcggata tttgcgaaat
    38101 ttcgaatgta cgatgatatt agtattatca aacaaagtcc aataaaaatc aaaattttgc
    38161 accttatctt catagcctat ttctttaatc tgcacactag ctctctcatc ttttttaagt
    38221 ataaatttat aagtataatc aaaagttggt tcagatgcta aaacattact aaaaataaaa
    38281 aaaatacaaa ttaaataggg gcttatttta aacaatttta gccttcgtgt cctaaaattt
    38341 ttgcgcccaa ttctatataa atatcatttt gcctttcttc tatgaaatca ccattttcta
    38401 atatgaaatt ttttacatcc atttctgtta gaccttgttt ttccaaaagt tccaccatag
    38461 caatatgatc agcaaaaaat tcctcaaaaa ctttttctaa ggctcctaaa tttccatttt
    38521 gtataatttc tataaatttt
//
LOCUS       DAZBIH010000005        37107 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.005, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000005 DAZBIH010000000
VERSION     DAZBIH010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 37107)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 37107)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..37107
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.005"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            32..1560
                     /locus_tag="ACHFOB_000178"
                     /pseudo
     CDS             32..1560
                     /locus_tag="ACHFOB_000178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516966.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
     gene            1731..3284
                     /locus_tag="ACHFOB_000179"
     CDS             1731..3284
                     /locus_tag="ACHFOB_000179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010790832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HFN5799017.1"
                     /translation="MSKNVKNLDTSFFGHPKPLLSLSLTELWERFSFYGIRPLLYLFM
                     IASFEKSGMNLKPEEASAIMGIFASCLYLAALPGGWLADNYLGQKRAILLGALTIAFG
                     HLCIAFSYFNNKMIFVGMVFLVIGTGLFKTCASVMVGMLYKKNDARRDSGFTLFYMCF
                     NFGAFVAPLICGFLQKEYGWHFGFGAGGIGMLLAVIIFYLKTMPDLKEFDEKVGIDST
                     WDRPSKKSKNAFYIIIVSGIVLLGAIFLILGGFIKLDAQVINKNIILTILACAGIYFL
                     YLFAFTSLKIEEKRNLIIFIVLFLAAALFWSVYEQQYTSFNFFAEKLTDKTILNYEIP
                     TIWFQSLGGLFVILFAPFSTFIWTICAKNNKEISSIIKFALGLLGAALAFLIMALASN
                     HAISLNGDANTLRENLENSSQIILVSPWWLVSSFLLMVLGELCLSPVGLSIMTKIAPN
                     LIKSQVMGLWFVASALGNALAGFIGGKASEENIAYLPNLFYQCMWILLGAVIILLILK
                     KPINKILKN"
     gene            3300..5090
                     /locus_tag="ACHFOB_000180"
     CDS             3300..5090
                     /locus_tag="ACHFOB_000180"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HFN5799018.1"
                     /translation="MSIYKQRVLELRRLMKENNIDAYLILSADPHLSEYLPEYYKNRV
                     FISGFKGSVGTVLITQEEGFLWVDGRYWLQAQKELEGSGILLQKQDAKNTFTKWLEKN
                     LSEDQILGIDFALLPLSLQKDLKINCKANLKHIDLISPLWKDRPTLPQEKIYEHELEY
                     CSYSRKEKLALVRQKMKNLNATSHLISSLDDIAWLTNLRGNDVNYNPVFLSHLLILED
                     KALLFVDQKKVNSELEKKLNLDGFWLKNYDEIIMELEKLANTNLLIEPSKMTALLINS
                     LDKSVKIIQEINPSTHLKAVKNTKEIAHIQDAMIEDGVALCKFFAWLEEAIENKELIS
                     ELDIDAKASEFRAQSKHYISDSFATIAGFNENAAYPHYKATKESFAYLKKDGLLLIDS
                     GGQYKNGTTDITRVVPIGKANAEQIHDYTLVLKAHIAISSAIFPKDIAMPLLDAITRA
                     PLWKEQIDYIHGTGHGVGYFLNVHEGPQVLSYLSPVLEKTKVKEGMLTSIEPGIYKVG
                     KWGIRLENLVIHTKVENPKNKDFGEFLYFKPVTLCPFEISCIDTKMLDEKEKEWLNNY
                     HKEVFEKLSPKLGDYPKALVWLEKRTKAIF"
     gene            complement(5211..7016)
                     /gene="mrdA"
                     /locus_tag="ACHFOB_000181"
     CDS             complement(5211..7016)
                     /gene="mrdA"
                     /locus_tag="ACHFOB_000181"
                     /EC_number="3.4.16.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HFN5799019.1"
                     /translation="MRMRLVVGFILLFFIFLLSRVYYLSIKSNVYYEELAKQNAIKIE
                     FLPPVRGQITDRNGTLLAINDLGFSISIKPYLSIKKSNKGILDKELSELTNLFPDLNA
                     SKLAEIYKRNDSYYNQDFIKVVDFIPYDEIIPHYSELNLNKTIKIDPVVKRKYPFGKL
                     ASHIIGYVGKANLQDVQENEIAKLSNYTGKSGIERYYNDILQGEKGTRVYKVNALNQE
                     VEQLSYTPAMSNDIELTIDIELQSYLTSLLEGNAGAAIIMNVNDGSILAAGSFPEYDL
                     NPFVTGISFKDWDELSNSLDHPFTNKLINGYYPPGSVVKMGVGLSFLNSKNISPSTQY
                     VCNGSIELGGRFFRCWNRSGHGPVDLKHAIKYSCDVYFYNGSLQVGIDQISETLSRIG
                     FGAKTGVDLPSEFVGTLPSKEWKMQRYRQSWFQGDTLNTAIGQGNFLATPMQIARYTA
                     QIAKGGEVIPHFLKSIENNNTTIENQMDENKKEIFTLFEKSQLPYIRDAMYAVANEQG
                     GTSYRYLHNLDVKVAAKTGTAQVVGFSQTDKNRVDEKQFEYYTRSHAWLTSYAPYSKP
                     KYVVTVLLEHGGRNITSGATVAKIYQKMIELGYFK"
     gene            complement(7017..7511)
                     /locus_tag="ACHFOB_000182"
     CDS             complement(7017..7511)
                     /locus_tag="ACHFOB_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799020.1"
                     /translation="MRRNLSAYKAKFNGAYVFLGFFFLIYQILGSTFIYAPLLYGIFF
                     CYMFCLLEERERTFSKLDFRWYFSLFFLFFTDITYNFFIFSSWLAFFIFYYLCADWIK
                     TNLKIGKFIPVVFVLCAYGIILFLDMILSYIGDEKIKILGWAYIVSVFIECCLAYVFF
                     KGKI"
     gene            complement(7508..8104)
                     /gene="yihA"
                     /locus_tag="ACHFOB_000183"
     CDS             complement(7508..8104)
                     /gene="yihA"
                     /locus_tag="ACHFOB_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTP-binding protein
                     YihA/YsxC"
                     /protein_id="HFN5799021.1"
                     /translation="MIIGAKFITSLVKFDENLSSNFSEVAFLGRSNVGKSSLINSLCK
                     QKNLAKSSATPGKTQLINFFEVTCKRNEEKFNINFIDLPGFGYAKVSKNLKEIWNQNL
                     DEFLKLRTSIKLFIHLIDSRHTHLEIDVNLNDYLKRFLRPDQKILKVFTKCDKLNQSE
                     KAKLKNEFKDSILVSNLNKFGLDSLEDIIINQTLGLDK"
     gene            complement(8101..8562)
                     /locus_tag="ACHFOB_000184"
     CDS             complement(8101..8562)
                     /locus_tag="ACHFOB_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LptA/OstA family protein"
                     /protein_id="HFN5799022.1"
                     /translation="MVARQIILLLVCVSVTWATQIEVKALNFYSDENKGESILSGNVE
                     VIRGDDILNSEKLIIYTDKNRKPIRYEAMQNARFKIVLKGKTYKGSGDKFIYNVIKDT
                     YEINGHAYINELGSNQKLFGDKIIVDRKANIYRVESKDQKPARFVFDLKDK"
     gene            complement(8544..9059)
                     /locus_tag="ACHFOB_000185"
     CDS             complement(8544..9059)
                     /locus_tag="ACHFOB_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799023.1"
                     /translation="MAIKIFGILIALFTITFTILSLQDPYSLNLQTNALNFKNIEAKN
                     LKAYESNTSIIKAYYKANSWVRYADRDEFNDFITLNLDFNLSANRLEFFNKDMSKVLF
                     EGNVTYIGSNNVKIISQEVEYQPKDKILHTNTNFKALINGSIINGNTLNYDVKNKILN
                     IQGVNAWLQDK"
     gene            complement(9050..9538)
                     /locus_tag="ACHFOB_000186"
     CDS             complement(9050..9538)
                     /locus_tag="ACHFOB_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIIA family hydrolase"
                     /protein_id="HFN5799024.1"
                     /translation="MTELIFLDVDGCLTDGKIIYTSNGEFIKEFDVKDGAAIEAWLKL
                     GKKIAIITGRNCPCVEKRAKDLKIKILYQGIKDKLACAKEILQKLNLDFSQCAAIGDY
                     FNDKALLESVGLSFKPKDGHKDLNVDIVLSKKGGKAAVAQMIEILVEKNHLEEEWNKL
                     WL"
     gene            complement(9544..10371)
                     /locus_tag="ACHFOB_000187"
     CDS             complement(9544..10371)
                     /locus_tag="ACHFOB_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septal ring lytic transglycosylase RlpA family
                     protein"
                     /protein_id="HFN5799025.1"
                     /translation="MQIKTITLKLSAVSLGALFFSGCLGTSFFSSLDNAQVYYPSNDF
                     KSSPSSSGTKGTMKPYTINGKTYYPTVVAVGETADGIASWYGPGFHGKKTSNGETYNQ
                     NALTAAHKTLPMNTILKVTNLNNNRQVTVRVNDRGPFVNNRIIDLSKGAASQIDMIAS
                     GTAPVRLEVIGFGSSNSGNNIVHSNVNYGNSGEIANNGQIYEGGNFMVQIGAFKNPAG
                     AQTIAARYKTYRTYSSTIRTSSVDGLNRVFLTGFRSEDEARDFAASGAFAGAFVVRE"
     gene            complement(10331..11449)
                     /locus_tag="ACHFOB_000188"
     CDS             complement(10331..11449)
                     /locus_tag="ACHFOB_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HFN5799026.1"
                     /translation="MKKILLCFLICFNFLFAQINTPEFYERQMNVLRNLDINPSFISD
                     LIFVQTQQDIKSKHAQTLIDSMQNFSKVTPMIRKILAQQEVPDEILYLAMVESGLKTH
                     SVSNAKAVGVWQFMQPTARNLGLRIDAYVDERRDPVKSTYAATNYLKELKEEFGKWYL
                     ALLAYNCGNGKLRQAIKQAGSDDLSVLLNPDKKYLSLETRNFIRKILTLAFLANDRDF
                     LLDKDASLMNYALSNEFAKVDVPSSASLKEIAKNLNMDLATFKKYNPQFKHNFTPPGK
                     GYYMYIPLNKVAFFDKNFKAEKLAKVDTTIPMTRTYTVKSGDSLYKIAKNYNISVDEI
                     REFNKIAKNHLSINQKLIIPIKENKNANKNNYTKVVSR"
     gene            complement(11449..12264)
                     /locus_tag="ACHFOB_000189"
     CDS             complement(11449..12264)
                     /locus_tag="ACHFOB_000189"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HFN5799027.1"
                     /translation="MFLNLDFQDGLRIVDTHCHLDSEAFKDDLDETLNRAFKNGIEKI
                     IIPGADIKDLPYAATIAHKYKNIFFAAGVHPYEIDNYDEKILRQYLCDEKCVAVGECG
                     LDYFRFKSDLAEEIQKEKENQKKIFIAQLELAIEFKKPVIIHSREANHDTYEILHGYS
                     KDLVGGVLHCFNASEHLLTLFEEGFYFGIGGVLTFKNAKKLVEILPKIPKDKLLLETD
                     APYLTPEPYRGKRNEPLLTQFVANKMCEVLNLSRKELLEICFNNSEKLFFKGY"
     gene            complement(12255..13499)
                     /gene="cbrR"
                     /locus_tag="ACHFOB_000190"
     CDS             complement(12255..13499)
                     /gene="cbrR"
                     /locus_tag="ACHFOB_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bile resistance response regulator CbrR"
                     /protein_id="HFN5799028.1"
                     /translation="MNKKILIIDDNKMLGKLLAKKIQMTLDYEVDIAFGFAEAKELMN
                     NDYFLAFVDLCLPDAPNGEVVDYVIEKKIPAIVLTASGDKATKEKFMDKDILDYIFKE
                     SETCIDEIISSIVKLNQYAKTKVILAMSKLPERNEIKKILTQRQFNVLAAAHGEEAMS
                     YLNDNNDVKLIIADVNMPVISGFELLTQVRERFSDDELGVILLGDHNDSFEANSFKNG
                     VNEYLFKPLSKESFNCRLDRCLSYMDDKKFLSTYNVLDPVSGVKNYNALIDGIDDYFN
                     EIATKDEEFAFAFLDIDNLQMINDEYGREVGDEVIKICANEIVNETKGRDLVGRYSAE
                     KICILLKNISQERAIKIFSRIRVNIKKAGVLVNLDEVFFTASIGVVFGKSGDKIDSLV
                     DKASKILSQAKDNGKDRVEVCS"
     gene            complement(13602..15125)
                     /gene="recN"
                     /locus_tag="ACHFOB_000191"
     CDS             complement(13602..15125)
                     /gene="recN"
                     /locus_tag="ACHFOB_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5799029.1"
                     /translation="MINRIFMKENLGFKKAELEISKGLTVFTGLSGAGKSVLFKGILS
                     AFSLSESEAKIVEIELDDKLDLESFGIESEEENVFKLLKEKNTKYFINNQSIAKKSLQ
                     NLSKTFIKYLSAKENNEFGNEKFLNLLDALEMQENTNFISFLEDFKKDFNAYSQISNE
                     LNAILEEEKKVEELKELARVQIEKISSINPKIGEYEELLILKKKLSKKDKLEEAWSKA
                     ERIFELEKVVIEALNLSEVDASFFSECLNELRVICENQKMEDLDFDVETLLDRIENLS
                     YLIKRYESIENALEVLKQKKHELEHYENLSFEKKELEKKFQELKQKLEEKAQILTQTR
                     KKNLKKLEKCLNNYLKDLYMKDASLTLKENEKISILGKDEMMLDINLAHLKNLSSGEL
                     NRLRLAFIATECKILNAGKGILFLDEIDANLSGKEAMSIAKVLEELSKFYQIFAISHL
                     PQLSSKAHNHFLVEKNGEESKVKKLDQEERIKELARMVSGELVSDEAIEFAKTLFKD"
     gene            complement(15125..15985)
                     /locus_tag="ACHFOB_000192"
     CDS             complement(15125..15985)
                     /locus_tag="ACHFOB_000192"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(+) kinase"
                     /protein_id="HFN5799030.1"
                     /translation="MQNKIDHKNIKTIGLVTRPNVSLDKEILKLQSILSIYKVELVLF
                     KESSEILDLPKYGLDDLFKISDFVISLGGDGTLISLCRKACEYDKAVLGIHAGHLGFL
                     TDFKVDEAENFFQAFFQGEFRIEKPYLLSVFLEDKQGKILEKLAFNDVVISKNNQASM
                     AHIEVFRKEKKFNEYFGDGLIVATPAGSTAYNLSANGPIVYTLAQAFILTPVCSHSLT
                     QRPIVLPKGFEIEIMAKDCILCIDGQENYKMNDFKSIKVGLSDKNVALIHPKNRDYFQ
                     ILKEKLHWGN"
     gene            16076..17827
                     /gene="aspS"
                     /locus_tag="ACHFOB_000193"
     CDS             16076..17827
                     /gene="aspS"
                     /locus_tag="ACHFOB_000193"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HFN5799031.1"
                     /translation="MRSHYNTDLGISHVGQSVKLCGWVNSYRDHGGVIFIDLRDRSGI
                     IQLVCDPNDSKEAHEIASNARNEFVLIAEGAIRPRGEGLVNPKLKTGEIEVVVSKLTI
                     ENESAVPPFAIADESVNEELRLKYRFLDLRNPKLYENFALRSKACIAARNSLANMGFL
                     EVETPILTKATPEGARDYLVPSRVHQGEFYALPQSPQLFKQLLMCSGFDRYFQIAKCF
                     RDEDLRADRQPEFTQIDVEMSFCEQKDVINVAETFLKDIFKACGKEIQTPFRQMQYKD
                     AMENYGSDKPDLRFDLKFIDVIDIFAKSNNEIFANIAKDTKKNRIKAIRVPKGDTIFS
                     KRQMQRFEEFVRKFGAQGLAFIQVKEDGLKGPLCKFFSEEDLNELSKRCELEVGDVVF
                     FGAGAKKTVLDYMGRFRIFLANELNLIDPNALEFLWVVDFPMFEQNDDGSYSAMHHPF
                     TMPKNIDETDLEEISSIAYDVVLNGVELGGGSIRIHKNDIQQKVFKLLNIDEEQQKEK
                     FGFLLDALSFGAPPHGGIAIGLDRLIMLVTGANSIREVIAFPKTQRAQCLMTDAPSPA
                     SNEAMRELGIKLRENIK"
     gene            17824..18402
                     /gene="adk"
                     /locus_tag="ACHFOB_000194"
     CDS             17824..18402
                     /gene="adk"
                     /locus_tag="ACHFOB_000194"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019205 - nucleobase-containing compound
                     kinase activity [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HFN5799032.1"
                     /translation="MKELFLIIGAPGSGKTTDASLIAQADATNITHYSTGDLLRAEVA
                     SGSELGKTIDSFISKGNLVPLDVVVNTIVCALKAAPTKTIIIDGYPRSVEQMMEFDKV
                     LSEQNEICLKGVIEVRVSEEVAKERVLGRNRGADDNEEVFYNRMKVYTEPLNEILDFY
                     QKKKLHFIIDGERTIEPIVADMKELIKKIQSI"
     gene            18412..18930
                     /gene="ppa"
                     /locus_tag="ACHFOB_000195"
     CDS             18412..18930
                     /gene="ppa"
                     /locus_tag="ACHFOB_000195"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_process: GO:0006796 - phosphate-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic diphosphatase"
                     /protein_id="HFN5799033.1"
                     /translation="MDLSKIKIGDIPNKINAVIEIPYGSSIKYEIDKDSGAIMVDRVM
                     ASAMFYPANYGFIANTLADDGDPVDILVLNEYPIQAGAVIPCRLIGVLIMEDESGMDE
                     KLLAVPNSKIDARYDNIKTYTDLPQATLNKIKNFFETYKILEPNKWVKVQDFKDEKAA
                     IEILEKAIKNYK"
     gene            18971..19468
                     /gene="msrA"
                     /locus_tag="ACHFOB_000196"
     CDS             18971..19468
                     /gene="msrA"
                     /locus_tag="ACHFOB_000196"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HFN5799034.1"
                     /translation="MKNIVLGGGCFWCVEAVFERLKGVIDTEVGYSGGNPNPSYESVC
                     NGDGNIEVVKINYDEKQISLLEILTLFFKIHDPTSIDKQGGDIGIQYRSIIFYENEED
                     KILAQNFIEEQQKIFSKKIVTKISRLQTYYKAENYHQHYFINNPNQGYCQAVIAPKLQ
                     KIQSD"
     gene            complement(19621..20460)
                     /locus_tag="ACHFOB_000197"
     CDS             complement(19621..20460)
                     /locus_tag="ACHFOB_000197"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RsmB/NOP family class I SAM-dependent RNA
                     methyltransferase"
                     /protein_id="HFN5799035.1"
                     /translation="MQNILSSFAQEKNVCVFANTLKTSIEELEKEFLKQNLKFKKINA
                     YCYLFDAKDKAILSSMKAFNEAHFYIQNYSSYLCALNLEVKAGQSVLDMCAAPGGKSI
                     NLANFMQNTGYLACNEMSRDRFFILQKNLKNYGVNAKVFMKDGKNIGNLCPLKFDKIL
                     LDAPCSTFAKIGFDLEKSYKEIKNIAKTQKKLLHSALKALKIGGELVYSTCTFTKEEN
                     EEVIENALKSEFKLELLDIDLENVEAKAGQSEEFAEISKCRRILPSLDYDGFFIAKLR
                     KLC"
     gene            complement(20489..20872)
                     /gene="ruvX"
                     /locus_tag="ACHFOB_000198"
     CDS             complement(20489..20872)
                     /gene="ruvX"
                     /locus_tag="ACHFOB_000198"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HFN5799036.1"
                     /translation="MRALALDVGLKRIGVALCVDKKIALPLDAVLRKNRNQAANEIKN
                     LLKIHEISLLIVGIPKGGSREEEMTRRIKHFVSLLEFDKEICFVDESGTSKEALGYGV
                     ANTRKKDGKLDSLSAFIMIKDYFAL"
     gene            complement(20869..21642)
                     /gene="dprA"
                     /locus_tag="ACHFOB_000199"
     CDS             complement(20869..21642)
                     /gene="dprA"
                     /locus_tag="ACHFOB_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009294 - DNA-mediated transformation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-processing protein DprA"
                     /protein_id="HFN5799037.1"
                     /translation="MASEILPDEFLELFKDLKKPPKKLHYKGNLSLLKQDKIAIIGSR
                     RMSVYTKNCVFSLASMLKNAHLCVVSGGALGVDITASIAAMPNTIGIFANGLDQIYPR
                     TNEKIIKQIYENALALSEYEDDYLPKNYDFLLRNRLVIALSKAVVVAQADIKSGSMQS
                     AKLALELNKPLYVLPQRLGESTGTNLLLKENKAKLICDFKEFVSEFASIDTNQDEFLE
                     FCKKGVSVDEALKIYGQKVYEYELEGKISIEGLFIRVLV"
     gene            complement(21632..22714)
                     /locus_tag="ACHFOB_000200"
     CDS             complement(21632..22714)
                     /locus_tag="ACHFOB_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent polysaccharide deacetylase family
                     protein"
                     /protein_id="HFN5799038.1"
                     /translation="MSKKKLVQIQRYLIIAILFLLCIALALGILVKYQNSQDVFSVKP
                     DYFIDKQEDLISSNKDHYEIGIFQENEFDNNKSVSILEQKIQEIDDLNTSLNEQNLSS
                     VEQNLSLEQNQSLEQNFIPKDTNLTQDQNLTFDEDIHLNKISKKPKLAIIIDDMANAS
                     QVRGLKALNLKLNPSFFPPDKNHSETPKLALKFDFYMVHLPLAAINYNKPEIDTLNPN
                     DSKERIFKKIKQIKKDFKDLRYINNHTGSLFTSNEEAMRKLYEALKNQNIFFVDSKTI
                     GNSKANKIAKELSMPYIQRDVFLDNEDDVNYVKKQLESAVKLAQKKGFVIAIGHPRKN
                     TFKALEQSKDLLKGVDLVYLSEIYGK"
     gene            complement(22718..23740)
                     /gene="ilvC"
                     /locus_tag="ACHFOB_000201"
     CDS             complement(22718..23740)
                     /gene="ilvC"
                     /locus_tag="ACHFOB_000201"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HFN5799039.1"
                     /translation="MAITVYYDKDCDLNLIKSKKVAIIGFGSQGHAHAMNLRDNGVNV
                     TIGLREGSVSAVKAKNAGFEVMSVSEASKTADVVMILAPDEIQADIFNIEIKPNLSEG
                     KAIAFAHGFNIHYGQIVAPKGIDVIMIAPKAPGHTVRNEFTLGGGTPCLIAIHQDESK
                     NAKNLALSYASAIGGGRTGIIETTFKAETETDLFGEQAVLCGGLSALIQAGFETLVEA
                     GYEPEMAYFECLHEMKLIVDLIYQGGIADMRYSISNTAEYGDYITGPKIVTEETKKAM
                     KGVLKDIQNGVFAKDFILERRAGFARMHAERKNMNDSLIEKTGRNLRAMMPWISAKKL
                     VDKDKN"
     gene            23859..25793
                     /locus_tag="ACHFOB_000202"
     CDS             23859..25793
                     /locus_tag="ACHFOB_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNB domain-containing ribonuclease"
                     /protein_id="HFN5799040.1"
                     /translation="MKEFLNSLSYGISSHEVNNEFKQILRELLTNHIIKEHKNKYYLN
                     NGFAFGVLDISSKGTGFLQCFDESFKKDLLIENKNLKGANYKDIVAVKLLPLKKKRPS
                     AKVILVLKRANETSLVITKRYGEAVLGMNIKTGLSTTLKASQKSLKALPLGTILKIEN
                     ENNNIIEVLGHIDDESVDEKISLALFNKNNEFSDACIKEALANGDSVDASMYENRMDL
                     RALPFCTIDPIHAKDFDDAIYFDIQKREIYVAIADVSEYVYAYSAIDKEARNRGFSIY
                     FPHIAIPMLPRPLSENICSLKPHLDRLAYCFKIALDHENKVIKEELFEGIINSKRRFN
                     YDEVDEILIQKPDLKELSWLYELFEITKNLRKMRLKNAFEFRTEELRMNLDENLSLKS
                     TVFEKDTPSHNLIEDCMLLANKAAAKLIDIGVFRNHLSADARKIDKLLNELRELGIDV
                     NFKPNLPELIRDIQALADELNLRAEVDKLIIKAQKKAEYSSVNAGHFGLGFDKYSHFT
                     SPIRRYSDLILHRLLKAKQKNDEKLFNYLLLNIESTCENLSTLEREADKVAFDFMDRK
                     FARWAAKNIGKKFKALVVQNDGVCIAKLDDEIKGADIILYDTRVNLLESVEVQIMEAD
                     IVMAKIYAKITQRLIKEENV"
     gene            25786..26751
                     /gene="holA"
                     /locus_tag="ACHFOB_000203"
     CDS             25786..26751
                     /gene="holA"
                     /locus_tag="ACHFOB_000203"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HFN5799041.1"
                     /translation="MYRKELQILLSKDSIPNFFFLYGADNFQSELYAEFIKEKYKPDE
                     TLKLFFEEYNFTRASDFLSAGSLFSEKKLLEIKTSKKIPTKDLKVLVDLCKNNADNFF
                     LLELYDESSKQSDIEKIFSPHFVRFFKANGAKEGVELLSIKAKQLGVEITQNALFTLF
                     TSFDENLYLAASELNKFSGLRVDEKTIEQYCYSLNTGSFESFFEKILKKQDFKSELEK
                     ILDNFNEIALTNSLYNSFYRLFKIALYAKVNGKIDFKDLLGYTPPPQVGQNLSSQAFS
                     LKIEQYKEIFTLLLKSEYELKTNSKLVKKEFLISNLLKLARILKS"
     gene            26844..27887
                     /locus_tag="ACHFOB_000204"
     CDS             26844..27887
                     /locus_tag="ACHFOB_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002799865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease"
                     /protein_id="HFN5799042.1"
                     /translation="MDFENQLNAIVETIAERKTLVNTEEATKMTFIMPFLKTLGYDVF
                     NPSIVVPEYTADIGTKKGEKVDYAIFKDSKPFILIEAKNHTENLDNHNNQLVRYFNTN
                     PSIKFAILTNGIEYRFFTDIEQQNLMDKIPFLVVNLEKLKPRDIKDLKRFICTDLNLD
                     EILSIAMEKKYYRSIQEIFKSEIENPSDEFTSFFAKQMTEKRMTSAVLEEFKNYIKKS
                     FKEIINDLAYEKITSIKNNLQNINDDENDEQIDESKDIVTTEEELQGFYIVKSILASV
                     SANLEDVSYKDTLSYFSILYQGKVTKWICRLYFNTSKKSISFPDGASYNIEKLEDIYQ
                     YKADIIKAFESRK"
     gene            complement(27909..28253)
                     /gene="hypA"
                     /locus_tag="ACHFOB_000205"
     CDS             complement(27909..28253)
                     /gene="hypA"
                     /locus_tag="ACHFOB_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008901 - ferredoxin hydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase maturation nickel metallochaperone
                     HypA"
                     /protein_id="HFN5799043.1"
                     /translation="MHELSIVESLIELCEENALNNKAYNVQEIYVKIGRLSGIEADLF
                     KRCFETFKENSNICKNAKLFIELAPLEILCLKCDQTSILEENVFKCPKCQSIEYKITQ
                     GEDLHLMRLVME"
     gene            complement(28253..29227)
                     /gene="hypE"
                     /locus_tag="ACHFOB_000206"
     CDS             complement(28253..29227)
                     /gene="hypE"
                     /locus_tag="ACHFOB_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase expression/formation protein HypE"
                     /protein_id="HFN5799044.1"
                     /translation="MKNISLAHGGGGEEMNELLTKLFKIFDNEILNANNDAAILGNLA
                     LSTDSFVLSPIFLDEEVNIGKLCVCGSINDVLMVGAKPKYLSLGLILEEGFELEKLER
                     ILKSIKEECEKCGVMLVCGDTKVVPKGKADEIYINTTALGEIISKKESKNIKAGLSIL
                     LSGDIGRHGASVLIKRNELEADVKSDCKALDKEVLELLEKDIKVVAMRDATRGGLSAV
                     LNEWAKQSGNDLLIFEEKIIVQDEVLGLCELFGYEAYELANEGTFILCVEKEDELKAL
                     EILKKYNVNASIIGEVLEEKKARVILQNAYGAKRFLESPKGELLPRIC"
     gene            complement(29224..30315)
                     /gene="hypD"
                     /locus_tag="ACHFOB_000207"
     CDS             complement(29224..30315)
                     /gene="hypD"
                     /locus_tag="ACHFOB_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase formation protein HypD"
                     /protein_id="HFN5799045.1"
                     /translation="MNFIDEFRDKESILALKKLIEQELKNPINIMEICGGHTHSIMKY
                     ALPSILPKEINFIHGPGCPVCVMPRVRIDTAIKLASMKDTIFCTLGDLLRVPGSEISL
                     LDLRAKGADVRALYSPLEVLEIAKQNLNKNIIFFAIGFETTTPMSALLLQKIIEEKIN
                     NVFFHINHITVPAPVEAIMNDENVKINAFLGPSHVSVITGYGIYEPLAAKFKTPIAVS
                     GFEPVDILESVLNIIKQSNEGTFKVYNQYKRAVSKEGNIKAQNLVKKYFRVCDFEFRG
                     LGLIKDGGLELKEEFSAYDASKKFDCTVQSKNESKACICGQILRGLAKPYDCKVFGKA
                     CTPRSPIGSCMVSGEGACAAYYKYSKVNV"
     gene            complement(30299..30580)
                     /gene="hypC"
                     /locus_tag="ACHFOB_000208"
     CDS             complement(30299..30580)
                     /gene="hypC"
                     /locus_tag="ACHFOB_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HypC/HybG/HupF family hydrogenase formation
                     chaperone"
                     /protein_id="HFN5799046.1"
                     /translation="MCLSIPSEILEIDELNNALVQTLGVKRKVNLDLIDEPLKQGDYV
                     LIHVGVAMEKIDKEAALESIKTYQEIVEKMNSGEIKSDEGDLGLNEFHR"
     gene            complement(30580..31323)
                     /gene="hypB"
                     /locus_tag="ACHFOB_000209"
     CDS             complement(30580..31323)
                     /gene="hypB"
                     /locus_tag="ACHFOB_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0051604 - protein maturation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase nickel incorporation protein HypB"
                     /protein_id="HFN5799047.1"
                     /translation="MCKDCGCSINSSHTHDHHHDHHHENPSLKESKTIEVISKILSKN
                     DEEAKHNRAHFNEANTLCINLMSSPGSGKTTLLESTIKALKNELKIAVIEGDLETNND
                     AIRVKNAGALAYQITTGQSCHLDAFMVHEALHHLAIDDVDLLFIENVGNLVCPASYDL
                     GEHLNVVLLSVTEGSDKPQKYPVMFKKADIVLITKADLAHHFDFDVKEATRLIKELNP
                     RADIITLDAKNGTNMELWYKVLKLKKELF"
     gene            complement(31396..33582)
                     /gene="hypF"
                     /locus_tag="ACHFOB_000210"
     CDS             complement(31396..33582)
                     /gene="hypF"
                     /locus_tag="ACHFOB_000210"
                     /EC_number="6.1.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003998 - acylphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0016743 - carboxyl- or
                     carbamoyltransferase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyltransferase HypF"
                     /protein_id="HFN5799048.1"
                     /translation="MYHLGYKIKISGLVQGVGFRPLVYELALKSKLFGEVRNDGFGIE
                     IILACTQKECENFIENLKNHLPPLARIDQLIITQISILNYENFSITPSLENTKSTPML
                     SDFALCKECKKEFFDEKNPRFLYPFITCTHCGPRFSIIKSLPYDRFNTSMQELLMCEF
                     CKSEYEDPKNRRFHAQPISCPKCKINVFLKNPKGEILAKDQEAFIQSAKFLKEGKILA
                     IKGMGGFHLMCDAFNEEALKTLRLRKNRPKKPFALMCKDLQSTKELAFIDEKEEALLG
                     GVLAPIVILKAKKAFSLIAPDVDKIGIMLAYTPLHLLLFEYFKGNLVATSANLSGESI
                     IKDEFNLRQKLDKVFDFYLDYDREIINASDDSIAQVVNGKTMFLRTSRGLNPFYLERN
                     FNKKGTFLALGAELKNEFVIFYENKLLISPYIGDLKSLDVHERFFKLLEFFKQNYDLK
                     FDAILCDKHPHFSYAKEFEERIKISHHYAHFCAAYFEYEENFAKDEKALAFICDGTGY
                     GEDGKIWGGEVFVGNLKEYERIAHFENFTLINSDIKNIQNLALSLIFHYDLEDKAKEF
                     LAKIPKIELENLKKIYSHSNLQTSSLGRIIDAFGSIVFNLEKSSYEAQVGLMCEAFYD
                     KNLDFSYKLFVEKGQVNFKNLILGALQDEKTKAITGMFNALANFIIDFSKDYDLKVLL
                     SGGVFQNKTLLEILKAKNFDFFIPLKYPCNDSSIALGQMVHFLKKE"
     gene            complement(33563..35083)
                     /locus_tag="ACHFOB_000211"
     CDS             complement(33563..35083)
                     /locus_tag="ACHFOB_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799049.1"
                     /translation="MTLDFDFIYNADNDIFEYLLRFYAKNYNYILSKEENTYHFSIDA
                     DEENLKTFCDSLNFMSHSVFLKKFDVKAGQGFNPCIPEDKEFSRFSYITHLNSNAYQE
                     KKLLNKNEWGVFCECEFSSNLSEFEKINEENFNTFLNLAFDLLSQEKKIYLKDKNGIY
                     EFSLFKNEFIGDFLLPCDIKAINSVFVCSNENLKLLASLEKPLMKLRLNAMFRKNHNL
                     DFSDFKIRLARDLFCFALGLKLFENEYKFLSVKKIEEYQKDFYISALDEQVVVLEGFE
                     FINAKARELIFSKEDKNMARISYLVSRYKEKAFILELSKDYEDILLINKELNLLKLCL
                     PKHSKELYEEIKKDEIGARLLENFSKEFPLLDESFELQNNFYSLFGLVGRVLNLGKNL
                     QESVSELLKIADESKMPRGVKIDYRLKEDKSFDYTRTLRSAMSFMLAGVDSVNIAYGA
                     VESLAYFLRDTYDELREKKQSDLALISGSLFEHKSLLKNTLKHLKNCQLSDVPLRV"
     gene            complement(35125..35771)
                     /locus_tag="ACHFOB_000212"
                     /pseudo
     CDS             complement(35125..35771)
                     /locus_tag="ACHFOB_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344050.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
     gene            complement(35747..37063)
                     /locus_tag="ACHFOB_000213"
     CDS             complement(35747..37063)
                     /locus_tag="ACHFOB_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0042910 - xenobiotic transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006855 - xenobiotic transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HFN5799050.1"
                     /translation="MAKKQLSLTRLSFPIFWDLLSKYLTVIINTAMVSHYSNFLVGAM
                     GAGNQILDLFITIFSFLSVGCSVLIAQAIGAKDHVLARKVIHQSLFLNALLGFVCGVL
                     ILWHGEYLLYLLKIPQELLKDSEIYLHMLAICLFFDAIGIVLAAIVRVYNMAYWVMFI
                     GFLMDIVVICGNYYVLHYTKSELFGVGLSNIFARIVAIVALFAILFYKLKIHLKIKEM
                     IKLEKEVLKKVLNIGGFSAGENLLWIVQYTIAFAFVASLGEASLSVQTIYFQISMLIM
                     LIGQATSIANEIIVGKLVGARYENIAYKHAWRALYFSVIASALVAFLNYLCQDFTMQI
                     LGLKEELKNLMIPLFALSIFLEISRTFNIVMVNSLRASGDAKFPFFSGLVFMMGVSLP
                     VGYVLCFHFNLGILGVWIGFCADEFLRGMVNSYRWKSKKWQGKALV"
BASE COUNT        12994 a         6292 c         4900 g        12921 t
ORIGIN      
        1 ttttaagcat aaaaaagaaa ggtattggga agtgactaaa caagaaatac aaaaactcga
       61 tacaaatttc ctaggtcatc ccaagccttt attctctcta tcaatggtag aactttggga
      121 aagatttgct ttttatggca tacgatcttt acttgtgctt ttcatggcaa caaccataag
      181 caaaggtgga cttggaataa gcactgaata cgcctcggca atttatggca tttttgcagg
      241 atgcttgtat ttagcagcac ttcctggagg ctggattact gataattatt tagggcaaaa
      301 aaaggcttta tttctaggtt cttttattat agctttagga catattagca tagccttatc
      361 tattctaagc acacctatat ttttcctagg acttactttt atcgttattg gtactggatt
      421 ttttaaaact agtgcttctg taacagttgg aatgttatat aaacaaaatg atacaagatg
      481 cgatactggc tatacgattt tttatatagg aattaacatt ggagcattca ttgctcctct
      541 tatatgtggt tttattcaag caaaatggaa ttatcattta ggatttggca taggaggttt
      601 aggtatgcta atctctttgc ttattttata ttttaaagct atccctgaac ttgaagaatt
      661 tcataaaaat tgtactttaa ggcaaaactg ggaacaacca tttaaaaaaa gtaaaaattt
      721 aactcttata ctaagtataa gcttgttaag tattattgga ttttttctaa tttttattaa
      781 tcttgcagat attaatccca taatactatc aaaaaaactt ctaattgtaa ttttactatg
      841 tttggtaatt tatttcatat atctttttgt ttttaaaacc ttaaataaaa gagaaaaaca
      901 gcaattaaca attttaattg ttttattctt tgtagccact ttttttggag cacttttgaa
      961 caaaaaccta ccgcttataa tctttttgcg caagatttta caaatagaaa tatttttgat
     1021 tggaaaattc caacaaactg gtttcaatct tttaatccaa tttttatcat catacttgct
     1081 cctatagcaa gttatatttg gatattttta gagaaaaaaa atatatattt ttcttccatt
     1141 ggaaaattta ctttaggaat attatttgcc ggcattggtt ttatgatgat gacctttgct
     1201 tcacaaaatc taataaacaa caatggtttg ccaatatcca tggcttggat tatcataagt
     1261 atattctttt taacacttgg ggaattatgc gtgtctcctg ttggactctc tataatggct
     1321 aaggttgccc ctgatttaat caaaaatcaa atcatgggac tttggtttgt agcaagtgca
     1381 cttggaaatt ttgttgcagg acttatagga ggaaatgtca atattaaaaa catcgatcaa
     1441 cttcctaata tttttgaaca atgcatgtgg atgctttttg ttgtagcgct tttacttttt
     1501 attgctaaaa aaccaattta taaaattctt aacgaaaaaa ataagcaatt atctaactaa
     1561 acttaaaata caaaatacac caaagttgaa aattgatctt aatatttctt tttttatatt
     1621 tgcaaaaaag taacattatg atataaatca tttaaaaata ttacaaagtt atacatattt
     1681 tttaatttct tgtctataat ttataaataa aaatacacaa aggatataaa ttgagtaaaa
     1741 atgtaaaaaa tttagatact tcattttttg gacatccaaa accactttta tctctttcac
     1801 ttactgagct ttgggaaaga ttttcttttt acggaattcg ccccttgctt taccttttta
     1861 tgatagcaag ttttgaaaaa agcggaatga acttaaaacc tgaagaagca agtgcaatta
     1921 tgggaatttt tgcaagttgt ttatatcttg ctgctttgcc aggtggatgg cttgcggata
     1981 attacttagg acaaaaaaga gcaattttac taggtgcttt aactatagca tttggacatt
     2041 tgtgcatagc cttttcttat tttaacaata aaatgatttt tgttggtatg gtttttttgg
     2101 ttataggtac aggacttttt aaaacttgtg cttctgtaat ggttggaatg ctttataaaa
     2161 aaaatgatgc aaggcgtgac tctggtttta ctctttttta tatgtgcttt aattttggtg
     2221 cttttgtagc tcctttaatt tgcggctttt tacaaaaaga atacggatgg cattttggtt
     2281 ttggtgcagg tgggattggt atgcttttag cggtaattat tttctaccta aaaactatgc
     2341 ctgatttaaa agaatttgat gaaaaagttg gcatagactc tacttgggat agaccaagca
     2401 aaaaaagcaa aaacgcattt tacatcatca ttgtatcagg tattgttttg cttggagcaa
     2461 tatttttaat ccttggtggt tttataaaat tagatgcaca agttattaat aaaaatatta
     2521 ttctaactat cttagcttgt gctggaattt attttttata tcttttcgct tttacttctt
     2581 taaaaataga agaaaaaaga aatttaatta tttttattgt tttattttta gcggctgcgt
     2641 tattttggtc agtatatgag caacaataca cttcttttaa tttttttgca gaaaaattaa
     2701 cagataaaac catattaaat tatgaaattc ctacaatatg gtttcaatct cttggaggtt
     2761 tatttgttat actttttgca ccttttagta cttttatatg gactatatgt gccaaaaata
     2821 ataaagaaat ttcatctatt attaaatttg cattaggact tttgggtgca gctttggcat
     2881 ttttaataat ggctttagct tcaaatcatg caattagttt aaatggcgat gctaatacat
     2941 taagagaaaa tttagaaaat tcatcacaaa ttattttagt ttcaccttgg tggcttgtca
     3001 gtagcttttt gcttatggtt ttaggagagc tttgcctttc ccctgtggga ctttctataa
     3061 tgacaaaaat tgcacctaat ttaattaaat ctcaagtcat gggactttgg tttgtagcaa
     3121 gtgcattagg caatgcttta gctggattca taggtggtaa agcaagtgaa gaaaatatag
     3181 cttatttgcc aaatttattt taccaatgta tgtggatatt acttggtgct gttataattt
     3241 tacttatact caaaaaacct atcaataaaa tactaaaaaa ttaatattaa ggagaaaata
     3301 tgagtattta caaacaaaga gtattagaac ttagaagatt aatgaaagaa aataatattg
     3361 acgcctatct catcttaagc gcggatccgc atttgagcga atatttacca gaatattaca
     3421 aaaacagagt ctttatcagt ggctttaagg gttctgttgg aacagttctt atcacacaag
     3481 aagagggctt tttgtgggta gatggaagat attggcttca agcacaaaag gaattagaag
     3541 gtagtggcat acttttacaa aagcaagatg ctaaaaatac ttttaccaaa tggttggaaa
     3601 aaaatttaag cgaagatcaa attttaggca tcgattttgc acttttacct ttatctttgc
     3661 aaaaagattt aaagattaat tgcaaggcaa atttaaaaca tatagatttg ataagtccac
     3721 tttggaaaga tcgtcccact ttaccacaag aaaaaattta tgaacacgaa ctagaatact
     3781 gctcttactc aagaaaagaa aaattagcat tagtgcgtca aaaaatgaaa aatttaaatg
     3841 ctacttctca tttaatctcc agccttgatg atatagcttg gcttacaaat ttaagaggga
     3901 atgatgtaaa ttataatcct gtatttttaa gtcatttgct aatcttggaa gacaaagctt
     3961 tgctttttgt tgatcagaaa aaagtaaatt cagaacttga aaaaaaatta aatttagatg
     4021 ggttttggct taaaaattat gatgaaatca tcatggagct tgaaaaactt gcaaatacaa
     4081 atttgcttat tgaaccttca aaaatgaccg ctttactcat aaattcttta gataaaagcg
     4141 taaaaatcat tcaagaaatt aatccaagca ctcacttaaa agcagttaaa aatacaaaag
     4201 aaatagcgca tatacaagat gctatgatag aagatggagt ggctttatgt aaattttttg
     4261 catggcttga agaagcgata gaaaataaag aattaataag cgaattagac atagatgcta
     4321 aagcaagcga atttagagca caaagcaagc actacataag tgatagtttt gccactatag
     4381 caggctttaa cgaaaacgca gcatatccac attataaagc cacaaaagag agttttgctt
     4441 atcttaaaaa agatgggctt ttacttattg attctggtgg acaatataaa aacggcacaa
     4501 cagatattac acgcgttgta ccaataggaa aggctaatgc agaacaaatt catgactata
     4561 ccttggtttt aaaagcacat attgccattt ccagtgcaat ttttccaaaa gatatagcta
     4621 tgcccttact tgatgcaatt acacgcgcac ctttatggaa agaacaaatt gactatatac
     4681 acggcacagg acatggcgtg ggatattttt taaatgtcca tgaaggtcca caagttttat
     4741 cttatctatc ccctgtgctt gaaaaaacaa aagtcaaaga aggtatgcta acctccatag
     4801 agccaggtat ttataaagta ggtaaatggg gtataagact tgaaaattta gttattcata
     4861 ccaaagtaga aaatcctaaa aataaagatt ttggagagtt tttatacttt aaacctgtta
     4921 ctctttgtcc ttttgaaata tcttgtattg atacaaaaat gttagatgaa aaagaaaaag
     4981 aatggttaaa caattatcac aaagaagtat ttgaaaaact ttctcctaag ctaggtgatt
     5041 atccaaaagc tctagtttgg cttgaaaaaa gaacaaaagc catcttttaa gatacttttg
     5101 ttaacataga taaattttcc ttgtattaaa cttataattt gtttaataca aggtttttaa
     5161 accaattgct aaaaaagttt tttttgaaaa actcaattta caactaaaaa ttatttaaaa
     5221 tatccaagtt caatcatttt ttgataaatt ttagctacag ttgcccctga agtaatattt
     5281 ctcccaccat gttccaaaag aacggtaact acatattttg gcttagaata aggagcataa
     5341 gaagtaagcc acgcatgaga tctagtataa tactcaaatt gtttttcatc gaccctattt
     5401 ttatctgttt gtgaaaatcc cacaacctga gcagttcctg tttttgctgc aactttcaca
     5461 tcaagattat gcaaataacg ataagaggtt cctccttgct cattagcaac agcatacatt
     5521 gcatctctta tataaggcaa ttgactcttt tcaaataaag taaaaatttc ttttttattt
     5581 tcatccattt gattttctat agttgtatta ttattttcta tgctttttaa aaaatgaggt
     5641 ataacctctc caccttttgc gatttgagcc gtatatctag caatttgcat aggtgttgcg
     5701 agaaaattac cttgacctat agctgtattt aaagtatcac cttgaaacca agattgtcta
     5761 tatctttgca tcttccattc tttacttggt aaagttccta caaattcact aggtaaatct
     5821 acccctgttt tcgctccaaa gccaatgcga gataaagttt cacttatttg atcgattcca
     5881 acttgcaaac tgccattata aaaataaaca tcacaactat attttatcgc atgttttaaa
     5941 tccacaggtc catggcccga tcgattccaa catctaaaaa acctgcctcc aagctcaatg
     6001 cttccattgc aaacatattg agtcgacggg ctaatatttt tagaatttaa aaaagaaagc
     6061 cctactccca tttttacaac agaacctgga ggataatatc catttataag tttatttgta
     6121 aaaggatgat caagactatt tgaaagctca tcccaatcct taaaagaaat ccctgttaca
     6181 aaaggattaa gatcatattc agggaaactc cctgcagcta aaatagatcc atcatttaca
     6241 ttcataatta tagcagctcc agcattccct tcaagcaatg aagttaaata agactgaagc
     6301 tctatatcta tcgtaagttc tatatcatta gacatagcag gagtgtaaga aagctgttct
     6361 acttcttgat ttaaggcatt aaccttataa accctagttc ctttttctcc ttgtaaaata
     6421 tcattataat agcgttctat accgcttttt cccgtatagt tagaaagttt tgctatttca
     6481 ttttcttgaa catcttgcaa atttgcctta cctacatacc caataatatg cgaagccaat
     6541 tttccaaaag gatattttct ttttacaaca ggatctattt ttattgtttt attaagattt
     6601 aactctgaat aatgcggaat aatctcatcg tagggtataa aatctacaac tttaataaaa
     6661 tcttgattat agtaagaatc atttctctta taaatttctg ctaatttact agcatttaaa
     6721 tcgggaaata aatttgtaag ttcagataat tctttatcta aaattccttt atttgacttt
     6781 ttaatactta aataaggttt aatagaaata ctaaaaccca aatcattaat agccaataaa
     6841 gttccatttc tatctgtaat ttgaccccta acaggtggta aaaattcaat ttttatggca
     6901 ttttgtttgg caagttcttc ataatataca tttgatttta tactcaaata atacacacga
     6961 cttaataaaa atataaaaaa caatagtata aatccaacaa ctaaacgcat tctcatttaa
     7021 attttacctt taaaaaacac ataagctaaa caacattcta taaaaactga aacaatatac
     7081 gcccatccta aaattttaat tttttcatct ccaatataag acaatatcat atccaaaaac
     7141 aaaataatgc cgtaagcaca aagcacaaaa acaacaggga taaatttacc aatttttaaa
     7201 tttgtcttaa tccaatctgc acaaagataa taaaaaataa aaaatgccaa ccaagatgaa
     7261 aaaataaaaa aattataagt tatatcagta aaaaataaaa aaaataaaga aaaataccat
     7321 ctaaaatcaa gctttgaaaa agttctttct ctctcttcta gtaagcaaaa catataacag
     7381 aaaaaaatcc cataaagtaa cggagcatat ataaaagtcg aaccaagaat ctgatagatt
     7441 agaaaaaaaa atcctaaaaa gacataagct ccattaaatt ttgctttata agcacttaaa
     7501 tttcttctca tttatcaaga cctaaagttt gattgataat aatatcttct aaagaatcaa
     7561 ggccaaattt attcaaattt gaaactaaaa tagagtcttt aaattcattt tttaacttag
     7621 ctttttcact ttgatttaat ttatcgcatt tggtaaaaac ttttaaaatt ttttgatcag
     7681 gtcgtaaaaa tcttttcaaa tagtcattta aatttacatc gatctctaaa tgagtatgtc
     7741 ttgaatcgat taaatgtata aataacttta tcgaggttct taattttaaa aattcatcta
     7801 agttttgatt ccatatttct tttaaatttt tagaaacctt tgcataacca aaccctggca
     7861 aatcgataaa attgatatta aatttttctt catttctttt gcaagttact tcgaaaaaat
     7921 ttataagctg agtttttcca ggagttgccg aacttttggc taaatttttt tgtttacaca
     7981 aagaattgat taaagaactt tttccgacat tagaacgccc caaaaatgct acttcgctaa
     8041 aatttgagct caaattctca tcaaatttca ctaaagaagt gataaattta gcaccaatta
     8101 tcatttgtct ttaagatcaa atacaaaacg agcaggtttt tgatccttgc tctctactcg
     8161 ataaatatta gcttttctat cgactattat tttatcacca aaaagttttt gattgcttcc
     8221 aagctcattt atataagcat gaccattaat ctcgtaagta tctttaataa cattataaat
     8281 aaatttatct ccactacctt tataagtttt accttttaaa acaatcttaa acctagcgtt
     8341 ttgcattgct tcataacgaa taggtttgcg atttttatcc gtataaataa tcaatttttc
     8401 agaatttaaa atatcatcac ccctaattac ttctacattt ccactaagaa tactttcacc
     8461 cttattttca tctgagtaaa aatttaaagc ttttacttca atttgagttg cccaagttac
     8521 acttacacaa actaacaata aaattatttg tcttgcaacc acgcgtttac tccttggata
     8581 tttaaaattt tgttttttac atcatagttt aaagtatttc cgttaataat acttccattg
     8641 atcagagctt taaaattagt atttgtgtgt aaaattttat ccttaggttg gtattctacc
     8701 tcttgagaaa taattttgac attattagaa cctatataag taacatttcc ttcaaacaaa
     8761 accttgctca tatctttatt gaaaaactct aaacgattcg cgctaagatt aaaatctaaa
     8821 tttaaagtaa taaaatcatt aaattcatct ctatctgcat atctcaccca agaatttgcc
     8881 ttataatatg ccttaattat actagtatta ctctcataag ctttcaaatt tttagcctca
     8941 atatttttaa aatttaaagc attagtttgc aaattcaaag aatacggatc ttgcaaactt
     9001 aaaatcgtaa aagtaattgt aaaaagagca attaaaattc caaaaatttt tatagccaaa
     9061 gcttattcca ttcttcttct agatgatttt tttctactaa aatttctatc atctgtgcta
     9121 cagcagcctt accacctttt ttgctaagca ctatgtctac atttaaatct ttatgaccat
     9181 cttttggctt aaaactaagt cctacacttt caagcaaagc cttatcgtta aaatagtctc
     9241 caatagccgc acactgagaa aaatctaaat taagtttttg taaaatttct tttgcacaag
     9301 ctaacttatc cttgatacct tgatataaaa tttttatttt taaatcttta gctctttttt
     9361 caacacaagg acaatttcta cctgtaataa tagcaatttt tttaccaagc tttagccaag
     9421 cctcgatagc cgctccatct tttacatcaa attctttaat aaattctcca ttagaagtat
     9481 aaataatctt cccatcagtt aaacagccat ctacatccaa aaaaatcaat tctgtcataa
     9541 tttctactct cttacaacaa atgcacctgc aaatgcacca cttgcagcaa aatcccttgc
     9601 ttcatcttca cttctaaagc ctgttaagaa aacgcgattt aacccatcca ctgagcttgt
     9661 gcgtatagta gagctataag ttctataagt tttatatctt gctgctatcg tttgtgctcc
     9721 agctgggttt ttaaaggctc caatttgaac catgaaattt ccaccttcat aaatttgtcc
     9781 attatttgca atctctccac tatttccata gtttacatta gaatgtacaa tattattacc
     9841 cgaattactt gatccaaacc ctataacctc aagccttact ggagctgttc ctgaagcaat
     9901 catatcaatt tgactagcag ctccttttga taaatctata atacgattat ttacaaaagg
     9961 acctctatca ttcacacgaa cggtaacttg acgattgtta tttagattgg ttacttttaa
    10021 gatggtattc ataggtaaag ttttatgagc cgcggttaaa gcattttgat tataggtttc
    10081 gccattagag gttttcttgc cgtgaaagcc tggcccatac caactcgcaa taccatcagc
    10141 agtttcgcct actgctacaa cagtaggata ataagtttta ccgttgatag tataaggctt
    10201 cattgttcct ttagtccctg aagaactagg actgctttta aaatcatttg aaggataata
    10261 cacttgagca ttatccaagc tagaaaaaaa actagtgccc aaacaaccac taaaaaataa
    10321 agcccctaga ctaacggctg acaactttag tgtaattgtt tttatttgca tttttattct
    10381 ccttgattgg tataattaat ttttgattaa tgctaagatg attttttgct attttattga
    10441 attctcgaat ttcatcaaca cttatattat aattttttgc tattttatat aaagagtcac
    10501 cagacttaac ggtataagtt cttgtcatag gtatagttgt atcaaccttc gcaagttttt
    10561 ctgctttaaa atttttatca aaaaatgcta ctttattaag tggtatatac atataatacc
    10621 ctttaccagg aggcgtaaaa ttatgtttaa attgtggatt atatttctta aaggttgcaa
    10681 gatccatatt taaattttta gctatttctt ttaaagatgc agaagaaggc acatcaactt
    10741 ttgcaaattc attgcttaaa gcataattca ttaaagacgc atctttatct agtaaaaaat
    10801 ccctatcatt agctaaaaaa gcaagcgtta aaatctttct tataaaattt ctagtttcta
    10861 aagaaagata tttcttatca gggttcaata aaacacttaa atcatcactt cctgcttgct
    10921 tgatagcttg tcttagcttg ccatttccgc aattataagc taaaagtgct aaataccatt
    10981 tgccaaattc ttcttttaac tcttttaaat aatttgtagc ggcataagtt gacttgaccg
    11041 gatcacgcct ttcatcaaca taagcatcga ttcttaaacc caaatttcta gctgttggtt
    11101 gcataaattg ccaaacccct acagccttgg cattagaaac actatgagtt ttcaagcctg
    11161 attcaaccat agctagatac aaaatctcat caggaacttc ctgctgggct aaaatttttc
    11221 ttatcatagg agtaactttt gaaaaatttt gcatactatc tattaaagtt tgagcatgtt
    11281 ttgattttat atcttgttga gtttgcacaa aaatcaaatc actaataaaa cttggattaa
    11341 tatctaaatt tcttaaaaca ttcatttgtc tttcataaaa ttcaggagta ttaatttgcg
    11401 caaaaagaaa attaaaacat attaaaaaac acaataaaat ttttttcatt aataaccttt
    11461 aaaaaataat ttttcagaat tgttaaaaca aatttctaga agctcttttc ttgataaatt
    11521 caatacttca cacattttgt ttgctacaaa ttgagttaac aaaggttcat ttcttttacc
    11581 acgataaggc tctggagtaa gatatggagc atcagtttca agtagtagtt tatcttttgg
    11641 aattttaggc aaaatctcaa ctaatttctt agcattttta aaagttaaaa ctcccccaat
    11701 accaaaataa aatccctctt caaaaagagt tagcaaatgt tcgcttgcat taaagcagtg
    11761 taaaactcct cctacaagat ccttagaata cccatgtaaa atctcataag tatcatgatt
    11821 tgcttctctt gagtgaatga taacaggttt tttaaattca atagcaagct caagctgtgc
    11881 aataaaaatc tttttttgat tttctttttc tttttgaatt tcttcagcaa gatcactttt
    11941 aaaacggaaa taatcaagcc cacattcacc tacagctaca cacttttcat cgcataaata
    12001 ctgtcttaaa attttctcat cataattatc aatttcataa ggatgcaccc ctgctgcaaa
    12061 aaaaatattt ttatatttat gagcaattgt agctgcataa ggcaagtctt ttatatcagc
    12121 accaggtatg atgattttct ctataccatt tttaaaagca cgatttaaag tttcatctaa
    12181 atcatcttta aatgcttcac tgtctagatg gcaatgcgta tcaacaatcc ttaaaccatc
    12241 ttgaaaatca agatttaaga acatacttca actctatcct tgccattatc ttttgcttga
    12301 gacaatattt tacttgcttt atcaaccaaa gaatcaatct tatctccact ttttccaaaa
    12361 accacgccta tagaagctgt aaaaaagact tcatctaaat taactaaaac accagctttt
    12421 tttatattta ctcgtatacg agaaaagatt ttaatcgctc tttcttggga tatattttta
    12481 agtaaaatac aaattttttc tgcactatat ctacctacaa gatctcttcc tttagtttca
    12541 ttaactattt cattggcgca gattttaatt acttcatcac caacttcacg gccgtattca
    12601 tcgttaatca tttgaagatt atctatatct aagaaagcaa aagcaaattc ctcgtctttt
    12661 gttgctattt cgttaaaata atcatctatt ccatcgatta aagcattata atttttaacc
    12721 ccagatacag gatctaaaac attataagtg cttaaaaatt ttttatcatc catgtaagat
    12781 aaacaacgat ctaagcgaca attaaaactt tctttgctta aaggcttaaa caaatactca
    12841 ttaactccat ttttaaaaga attcgcttca aatgaatcat tatgatcccc caaaagaatc
    12901 acacctaatt catcatcact aaaacgttct cttacttgag tcaaaagctc aaaaccacta
    12961 attactggca tattgacatc tgctataata agcttaacat cattattatc atttaaataa
    13021 ctcattgctt cttcaccatg agctgcagct aaaacattaa attgtctttg agtaagtatt
    13081 tttttaattt cattacgttc aggtagcttg ctcatagcta aaatcacttt agtttttgca
    13141 tattgattaa gttttacaat agaactaata atctcatcaa tgcaagtttc actttcttta
    13201 aaaatataat ctaatatatc tttatccata aatttttctt tagtagcctt atcaccacta
    13261 gccgtaagaa caatagcagg aattttcttt tctataacat aatccacaac ttcaccattt
    13321 ggggcatctg gcaaacataa atccacaaaa gctaaaaaat aatcattatt cattaattcc
    13381 ttagcttcgg caaaaccaaa agcaatatct acctcataat ctaaagtcat ttgaattttt
    13441 ttagctaaaa gtttgccgag cattttattg tcatcaataa ttaaaatttt cttattcata
    13501 gtgtgtaaaa tacctttata tctaaaattt ttaatatatt tgtttcaaag aaaggaaatt
    13561 ttatagttat atattctaac atagtaaaat aaaaaatccg cttaatcctt aaacaaggtc
    13621 ttagcaaatt cgattgcttc atcactaaca agctctccac ttaccatcct agcaagctct
    13681 ttaattcttt cttcttgatc aagctttttt accttgcttt cttcgccatt tttttcaact
    13741 aaaaaatgat tatgcgcctt agaggaaagt tgaggcaaat gagaaatagc aaaaatttga
    13801 taaaacttag aaagctcctc taaaaccttg gctatactca tagcctcttt tccgcttaaa
    13861 tttgcatcga tttcatctaa aaataatatc cctttgcctg catttaaaat tttacattct
    13921 gtggctataa aagcaagtct taagcgattt aattcacccg aacttaaatt ttttaaatga
    13981 gctaaattaa tatctagcat catctcatct ttgcctaaaa ttgaaatttt ttcattttct
    14041 ttaagtgtca aacttgcgtc tttcatataa agatctttaa gataattatt taaacatttt
    14101 tctaattttt taaggttttt ctttcttgtt tgagttaaaa tttgtgcttt ttcttctaat
    14161 ttttgtttta attcttgaaa ttttttttca agttcttttt tttcaaaact taaattttca
    14221 taatgttcta gttcatgttt cttttgcttt aaaacttcta aagcattttc tatgctttca
    14281 taacgcttga tgagatagga taaattttca atgcgatcta aaagcgtctc cacatcaaaa
    14341 tccaaatctt ccattttttg attttcacaa atcacgcgta attcatttaa acattcacta
    14401 aaaaaacttg catcaacttc gcttaaattt aaagcttcaa taacaacttt ttcaagctca
    14461 aaaatacgct ctgccttact ccaagcttct tctaatttat cttttttaga aagctttttt
    14521 ttaagtatta aaagctcttc atactcacct attttaggat taatgcttga aattttttca
    14581 atttgcactc tagctaattc ttttaattct tctacttttt tttcttcttc taaaattgca
    14641 ttaagctcat tagaaatttg actataagca ttaaaatctt ttttaaaatc ttctaaaaag
    14701 gaaataaaat ttgtattttc ttgcatttct aaggcatcta agagatttaa aaatttttca
    14761 tttccaaatt cgttattttc ctttgcgctt aaatacttaa taaaagtttt acttaaattt
    14821 tgcaaacttt ttttcgctat gctttgattg ttaataaaat attttgtgtt tttttctttt
    14881 aaaagcttaa aaacattctc ctcttcgctt tctatgccaa aactttctaa atctaactta
    14941 tcatctagtt ctatttcgac aattttagcc tcactttcac tcaaagaaaa tgcggataaa
    15001 attcctttaa acaaaactga ttttccagct ccacttaggc ctgtaaaaac ggtaagccct
    15061 ttagaaattt caagctcagc ctttttaaaa ccaagatttt ctttcataaa aattctattt
    15121 atcatcaatt tccccagtgt aatttttctt ttaaaatttg aaaataatcc ctattttttg
    15181 ggtgaattaa agccacattt ttatcactta aacccacttt tatactttta aaatcattca
    15241 ttttataatt ttcttgccca tcaatacaaa gtatgcaatc ctttgccata atctctattt
    15301 caaaaccttt tggcaaaaca atagggcgtt gtgttaaaga atgagaacaa acaggagtta
    15361 agataaaagc ttgagctaaa gtataaacta tgggcccatt tgcacttaaa ttataagctg
    15421 ttgaacccgc aggagttgca acaataagcc catctccaaa atattcatta aatttctttt
    15481 cttttctaaa aacttctata tgagccatag aagcttgatt gtttttactg atgaccacat
    15541 cgttaaaagc taatttttct aaaatttttc cttgcttatc ttctaaaaaa acacttaaca
    15601 aataaggctt ttctattcta aattctcctt gaaaaaaagc ttgaaaaaaa ttttcagctt
    15661 catcaacttt aaaatctgtt aaaaaaccta aatgtccagc atgaattcct aaaactgctt
    15721 tatcatattc acaagcttta cgacataaag aaatcaaagt tccatctcca cctaaagaaa
    15781 taacaaaatc agatatttta aacaaatcat ccaatccata ctttggcaaa tctaaaattt
    15841 cagaactttc tttaaacaat acaagctcaa ctttatatat agataaaatc gattgaagtt
    15901 ttaaaatttc cttatctaaa ctcacattgg gtcgtgtaac aagtccgatt gttttaatat
    15961 ttttatgatc tattttattt tgcataaaaa attatatcaa atcttagcaa agcaaaagaa
    16021 taaaaatact ataattttgc tcattatctt aaaaaatctt tttcaaggaa taaatttgcg
    16081 aagtcattat aatacagact tgggaatttc ccatgttggt caaagcgtta aactttgcgg
    16141 ttgggtaaat agctaccgcg atcatggtgg agttattttt atagatttaa gagatagaag
    16201 tggtattatc caacttgttt gcgatccaaa tgatagcaaa gaagctcatg aaatcgcttc
    16261 caatgcaaga aatgaatttg tacttattgc agaaggtgct attcgtccgc gtggcgaagg
    16321 acttgtaaat cctaaattaa aaacaggaga aatcgaagta gttgtttcta aacttaccat
    16381 agaaaatgaa agtgccgtac ctccttttgc tatcgctgat gaaagtgtaa atgaagaatt
    16441 acgcttaaaa tatcgctttt tagatttaag aaatcctaaa ctttatgaaa attttgcctt
    16501 gcgttctaaa gcttgtatag cagctagaaa ttctttggca aatatgggat ttttagaagt
    16561 tgaaacccct attcttacca aagctactcc cgaaggtgca agagattatc tcgtgccttc
    16621 tcgtgtgcat cagggtgaat tttatgctct tccacaaagc cctcagcttt tcaaacaact
    16681 tttaatgtgt agcggttttg atcgttattt tcaaatcgca aaatgtttta gagatgaaga
    16741 tttaagagct gatcgccaac ctgaattcac acaaattgat gttgaaatga gtttttgcga
    16801 acaaaaagat gtaatcaatg tagctgaaac ttttttaaaa gatattttca aagcttgcgg
    16861 caaagaaatt caaacccctt ttagacaaat gcaatacaaa gacgctatgg aaaattatgg
    16921 ctctgataag ccagatttaa gatttgatct taaatttatt gatgtgattg atatttttgc
    16981 taagtcaaat aatgaaattt ttgcaaatat tgccaaagat acaaagaaaa atcgcatcaa
    17041 agccatacgc gttccaaaag gcgatactat tttttcaaaa agacaaatgc aaagatttga
    17101 agaatttgtg cgtaaatttg gtgctcaagg cttagctttt atacaagtta aagaagatgg
    17161 gcttaaaggt ccactttgta aattctttag cgaagaagat ttaaatgagc taagcaaacg
    17221 ctgtgaactt gaagtaggag atgtggtatt tttcggtgca ggagctaaaa aaacagtgct
    17281 tgattatatg ggaagattta gaattttctt agccaacgag ttaaatctta tagatccaaa
    17341 tgccttagaa ttcttatggg ttgttgattt tcctatgttt gagcaaaatg atgatggaag
    17401 ttattctgcg atgcaccatc cttttaccat gccaaaaaat atcgatgaga ctgatttaga
    17461 agaaatttca tctattgctt atgatgtagt gttaaatggc gttgagctag gtggaggtag
    17521 tataagaatc cataaaaacg atattcaaca aaaagtattt aaacttttaa atatcgatga
    17581 agaacaacaa aaagaaaaat ttggtttctt gcttgatgct ttaagttttg gtgctccacc
    17641 acatggaggt atcgctatag gacttgatag actcatcatg ctagttacag gagcaaacag
    17701 tataagagag gttatagcct ttccaaaaac ccaaagagcg caatgcttaa tgacagatgc
    17761 accatcgcct gctagcaatg aagcaatgag agaattggga atcaaattaa gggagaatat
    17821 aaaatgaaag aattgttttt aatcataggt gcaccgggta gtggaaaaac taccgatgct
    17881 agtttaatcg cacaagcaga tgcgacaaat atcacacact attcaacagg agatctttta
    17941 agagctgaag tagcaagtgg gagtgagctt ggaaaaacta tagatagttt tatatccaaa
    18001 ggcaatcttg ttcctttaga tgttgttgta aatactatag tttgcgcact aaaagctgct
    18061 ccaactaaaa ctattatcat cgatggctat ccaagaagcg tagaacaaat gatggaattt
    18121 gacaaggttt taagtgagca aaatgaaatt tgtcttaaag gtgttataga agtaagagta
    18181 agcgaagaag ttgccaaaga aagagtttta ggcagaaatc gtggtgcaga tgataatgaa
    18241 gaagtgtttt ataatagaat gaaagtttat acagaacctt taaatgaaat tttagatttt
    18301 tatcaaaaga aaaaacttca ttttattatc gatggggaac gcactatcga acctatcgtt
    18361 gcagacatga aagaactgat taaaaaaatt caaagtatat aaggagaaaa aatggattta
    18421 agcaaaatca aaatcggaga tattccaaat aaaatcaatg ccgtaatcga aattccatac
    18481 ggctcaagca tcaaatacga aatcgataaa gatagtggtg ctatcatggt agatcgcgtt
    18541 atggctagtg cgatgtttta cccagcaaac tatggtttta ttgccaatac tttggctgat
    18601 gatggtgatc ctgtggatat tttagtgctt aatgaatatc ctatccaagc tggagccgtg
    18661 attccttgtc gcttaattgg tgttttaatc atggaagatg aaagcggaat ggatgaaaaa
    18721 cttcttgcag ttccaaattc aaaaatagat gcaagatatg acaatataaa aacttacacg
    18781 gatttaccac aagcaacttt aaataaaatc aaaaatttct ttgaaactta taaaatttta
    18841 gagccaaaca aatgggttaa agtgcaagat tttaaagatg aaaaagctgc aattgaaatt
    18901 ttagaaaaag caatcaaaaa ctacaaataa tcctagccct tcaaagggct aaactcaagg
    18961 aaaactcgca atgaaaaata tcgttttagg tggtggttgt ttttggtgtg ttgaagccgt
    19021 atttgaacgc ctaaaaggtg taatcgatac tgaagttgga tatagcggag gaaatccaaa
    19081 tcctagctat gaaagcgtgt gtaatggtga tggtaacata gaagttgtca aaataaatta
    19141 cgatgaaaaa caaatctctc ttcttgaaat cttaacactc ttttttaaaa ttcatgatcc
    19201 aacaagtata gataaacaag gtggagatat tggtatacaa tatcgctcaa taatctttta
    19261 cgaaaatgaa gaagataaaa ttttagctca aaatttcatc gaagaacagc aaaaaatatt
    19321 tagcaaaaaa atagttacta aaatttcaag attgcaaact tactacaaag ctgaaaacta
    19381 tcatcaacat tattttataa ataatcccaa tcaaggatat tgtcaagctg taatagctcc
    19441 aaaactgcaa aaaatacaat cagactaatt tcatcttttt aaggttaaaa aaatttcaac
    19501 tttattcaca gccttttcac gctgtgattt tcttttcaaa gtacttaaaa atagaacttt
    19561 aagctttaat tttttaagtt tttttatgaa tttgtattta aatgtgaata attttattaa
    19621 ttaacataat ttcctaagct tagctataaa aaatccatca tagtctaagc ttggtaaaat
    19681 ccgtctacat tttgaaattt cagcaaattc ttcactttgc cctgctttag cctcaacatt
    19741 ttccaaatca atatctaaaa gctctaattt aaactcgctt tttaaagcat tctctatcac
    19801 ttcttcattt tcttccttgg taaaggtgca agtactatat acaagctctc cgcctatttt
    19861 taatgccttt aaagcagaat gtagaagttt tttttgagtt tttgcaatat ttttgatttc
    19921 tttataactt ttttccaaat caaaacctat tttagcaaaa gttgaacaag gtgcatcaag
    19981 taaaatttta tcaaatttta aaggacataa attgcctata tttttaccat ctttcataaa
    20041 aactttagca ttcacgccgt aatttttaag atttttttgc aaaataaaaa atctatccct
    20101 actcatctca ttgcaagcta aataacctgt attttgcata aaatttgcaa gattgatact
    20161 tttgccaccc ggagctgcac acatatcaag aacactttgc cctgctttga cctctaaatt
    20221 taaagcacac aaataagaag aataattttg tatataaaag tgcgcctcgt taaaagcttt
    20281 catagagctt aagatggctt tatctttggc gtcaaacaaa taacaataag cgttgatctt
    20341 tttaaatttt aaattttgtt ttaaaaattc tttttctaat tcttcaatgc tagtttttaa
    20401 agtatttgca aatacacaaa catttttttc ttgagcaaaa gaagataaaa tattttgcat
    20461 ttcatcttta gtataaagtt tttctattct agagagcaaa ataatccttt atcatgataa
    20521 aagcggataa agagtctaat ttaccatctt ttttgcgtgt attggctacg ccgtatccta
    20581 aagcttcttt acttgttcca ctttcatcta caaagcaaat ttctttatca aattcaagca
    20641 aagatacaaa atgcttaatg cgtcttgtca tttcttcttc tcttgatcca cccttaggaa
    20701 tgcctacaat gagtaaagaa atttcatgta ttttaagtaa atttttgatt tcattggcag
    20761 cttgattgcg attttttctt aaaactgcat ctaaaggcaa agcgatcttt ttatctacgc
    20821 aaagcgctac acctatgcgt tttaaaccta catctaaagc caaagctctc atactaaaac
    20881 ccttataaaa agcccttcga tggaaatttt tccctcaagt tcatattcat aaactttttg
    20941 tccataaatt tttaaagcct catcaacact cacacctttt ttacaaaact ctaaaaactc
    21001 atcttgattt gtatctatac ttgcaaactc acttacaaat tctttaaaat cacaaattaa
    21061 ctttgcttta ttttccttta aaagcaaatt agtccctgtg ctttctccta gtctttgcgg
    21121 taaaacatat aaaggtttat tgagttctaa agcaagtttt gcactttgca tagaaccact
    21181 ttttatatct gcttgtgcaa ccacaacggc cttgcttaaa gcaataacca aacgatttct
    21241 tagtaaaaaa tcataatttt ttggcaaata atcatcttcg tattcgctta aagctaaagc
    21301 attttcataa atttgtttaa tgattttttc attagttctt ggataaattt gatctaaacc
    21361 attggcaaaa atacctatag tatttggcat agctgctata cttgcggtga tatccacacc
    21421 caaagcacca ccacttacca cacaaagatg ggcattttta agcatgctcg ctaaggaaaa
    21481 aacacaattt ttcgtataaa cactcatacg ccttgaacct ataatagcga ttttatcttg
    21541 ttttaataaa gataaatttc ctttatagtg taatttttta ggaggttttt ttaaatcttt
    21601 aaaaagttct aaaaattcat caggcaaaat ttcacttgcc ataaatttca ctcaaataca
    21661 caagatcaac gccttttaac aaatccttac tttgctctaa agctttaaaa gtatttttcc
    21721 taggatgtcc tatggctata acaaaacctt ttttttgtgc aagttttacc gcactttcaa
    21781 gttgtttttt aacataatta acatcatctt cattatccaa aaacacatct ctttgtatat
    21841 aaggcatact gagttcttta gcgattttat ttgccttaga atttcctata gttttagaat
    21901 ctacaaaaaa tatattttga ttttttaaag cctcgtaaag ctttctcata gcttcttcat
    21961 tgcttgtaaa taaacttcct gtgtgattat tgatatatct taaatcctta aaatcttttt
    22021 taatttgctt gattttttta aaaattcttt ctttgctatc atttggattt aaagtatcaa
    22081 tttctggttt attataatta attgctgcta aaggtaaatg caccatataa aaatcaaatt
    22141 ttaaagcaag ttttggcgtt tcactatggt ttttatctgg cggaaaaaaa gaaggattta
    22201 actttaaatt taaagctttt aaacctctaa cctgacttgc atttgccata tcatcgataa
    22261 taatagcaag ttttggtttt ttagaaattt tatttaaatg aatatcttca tcaaaagtta
    22321 aattttgatc ttgggttaaa tttgtatctt ttggaataaa attttgttct aaactctgat
    22381 tttgctctaa acttaaattc tgctccacac tgcttaaatt ttgctcattt aaacttgtat
    22441 ttaaatcatc gatttcttga attttttgct ctaaaatact tacagattta ttattatcaa
    22501 actcattctc ttgaaaaata ccaatttcat aatgatcttt atttgatgaa attaaatctt
    22561 cttgtttatc aataaaataa tccggcttaa cagaaaaaac atcttgggaa ttttgatatt
    22621 ttactaaaat tcccaaagct aaagctatac aaagtaaaaa aagtatagct atgattaaat
    22681 aacgctgaat ttgaactaat tttttctttg acaatgttta attcttatct ttatctacta
    22741 attttttagc actgatccaa ggcatcatag cacgcaaatt gcgccctgtt ttttctatca
    22801 aagaatcatt catatttttg cgttctgcat gcattctagc aaaacctgca cggcgttcta
    22861 agataaaatc ttttgcaaaa acaccatttt gtatatcttt taaaacacct ttcatcgctt
    22921 ttttagtctc ttcagtaaca atctttggtc ctgtaatata atcgccgtat tctgcagtat
    22981 ttgagataga ataacgcata tctgcaatac caccttgata aatcaaatcc acaatgagtt
    23041 tcatttcatg caaacactca aaataagcca tttcgggttc ataacctgct tcaaccaaag
    23101 tctcaaaacc tgcttgaatc aaagcactaa gcccaccaca aagcacggct tgttcaccaa
    23161 aaagatctgt ttctgtttcg gctttaaagg ttgtttctat aatacctgtg cgtccgcccc
    23221 caatcgcact tgcataactt aaggctaaat ttttagcatt tttactttca tcttgatgga
    23281 tggctattaa acaaggagtt ccacctccta aagtaaattc atttcttact gtgtgtcctg
    23341 gtgctttagg tgctatcatg ataacatcta taccttttgg agcaacaatt tgaccatagt
    23401 ggatattaaa accgtgcgca aaagctatag ccttgccttc acttaaattt ggttttattt
    23461 cgatattgaa aatatctgct tgaatttcat caggagctaa aatcataacc acatctgctg
    23521 tcttagaagc ctcgcttaca ctcattactt caaaaccagc attttttgct ttaacagcac
    23581 ttacactacc ttcacgaagt ccgatagtta catttacgcc attatctctt aaattcatcg
    23641 catgagcgtg cccttgagag ccaaagccta taattgctac tttttttgat ttgattaaat
    23701 ttaaatcaca atctttatca taatatactg taatagccat attcactcct taaaaattca
    23761 aaaattaaag gtattattat agcaattaaa gtataaaatt catatttttt ttataaactt
    23821 tatgtaagaa ttttacaaaa aatcataaag tatcaaaagt gaaagaattt ttaaacagtc
    23881 ttagttatgg cattagctct cacgaagtaa acaatgaatt taaacaaatt ttaagagaac
    23941 ttttaaccaa tcatatcatt aaagaacata aaaacaaata ctatcttaac aatggttttg
    24001 cctttggagt acttgatatt tcgagtaaag gcacaggttt tttacaatgc tttgatgaaa
    24061 gtttcaaaaa agatcttttg atagaaaaca aaaacctaaa aggcgcaaac tataaagata
    24121 tagttgcagt aaaacttcta cctttaaaga aaaaacgccc cagtgcaaag gtgattttgg
    24181 ttctaaaaag agccaatgaa acctctttag tgatcaccaa aaggtatggc gaagccgtgc
    24241 ttggaatgaa tatcaaaaca ggattaagta ccaccttaaa agcttctcaa aaatccttaa
    24301 aagcactacc tttagggaca attttaaaaa tagaaaatga aaataacaat atcatagaag
    24361 ttttaggaca tatcgatgat gaaagcgtag atgaaaaaat ctccttagct ctttttaata
    24421 aaaataacga atttagcgac gcttgtatca aagaagctct agcaaatggt gatagcgttg
    24481 atgcgagtat gtatgaaaat cgcatggatt taagagcctt gcctttttgc accatagatc
    24541 ctatacatgc aaaagatttt gatgatgcga tttattttga catccaaaaa cgagaaattt
    24601 atgtagctat tgctgatgtt agcgaatatg tttatgctta tagtgctata gataaagaag
    24661 caagaaatcg tggattttct atttattttc cacatattgc tatacctatg ctaccgcgtc
    24721 ctttaagtga aaatatctgt tctttaaaac ctcatttaga tcgcttagcg tattgtttta
    24781 aaatcgcact cgatcatgaa aataaggtca taaaagaaga actttttgaa ggtattatca
    24841 actcaaaacg ccgttttaat tacgatgaag ttgatgaaat tttgatacaa aaacctgatt
    24901 taaaagagct ttcatggctt tatgagcttt ttgaaatcac aaaaaattta cgcaaaatgc
    24961 gtcttaaaaa tgcctttgaa tttcgcactg aagaattaag aatgaattta gatgaaaatt
    25021 taagtctaaa aagcacagtt tttgaaaaag acacgccttc gcataattta atcgaagatt
    25081 gtatgctttt agccaataaa gccgcggcaa aactcataga tataggtgtt tttaggaatc
    25141 acttaagtgc tgatgcaaga aaaatcgata agcttttaaa tgaattacgc gaactaggca
    25201 tcgatgtaaa ttttaaaccc aatcttcctg aactcatacg cgacatacaa gctttagccg
    25261 atgagttaaa tttaagagca gaagtagata aactcatcat caaagcacaa aaaaaagcgg
    25321 aatattctag tgtaaatgcg ggacattttg gcttaggttt tgataaatac tcacatttta
    25381 caagccctat aagaaggtat tctgatctta ttttacacag acttttaaaa gccaaacaaa
    25441 aaaacgatga aaaacttttt aattatctac ttttaaacat agaaagcact tgcgagaatc
    25501 ttagtacact tgaaagagag gcggataagg ttgcttttga ttttatggat agaaaatttg
    25561 ctagatgggc ggctaaaaat ataggcaaaa aatttaaagc tttagttgtg caaaatgatg
    25621 gagtttgcat agctaaacta gatgatgaaa tcaaaggagc ggatataatc ctttatgata
    25681 cgcgtgtaaa tttgctagaa agtgttgaag tgcaaatcat ggaagcggat atagttatgg
    25741 caaaaattta tgctaaaatc acccaaagac tcataaagga agaaaatgta tagaaaagag
    25801 cttcaaatct tactttctaa agattcaata cctaattttt tctttcttta tggagcagat
    25861 aattttcaaa gcgaacttta tgctgaattt ataaaagaaa aatataagcc cgatgaaact
    25921 ttgaaacttt tttttgaaga atacaacttc actcgtgcga gtgatttttt aagcgcagga
    25981 tcgcttttta gcgaaaaaaa attactagaa atcaaaactt ctaaaaaaat tccaacaaaa
    26041 gatcttaaag ttttagtaga tctttgtaaa aacaatgcgg acaatttctt tcttttagag
    26101 ctttatgatg aaagttctaa acaaagcgat atagaaaaaa ttttctctcc tcattttgta
    26161 agatttttca aagctaacgg agctaaagaa ggcgtggaac ttttaagcat aaaagcaaaa
    26221 caactagggg ttgaaatcac tcaaaatgct ttatttactc tttttacaag ttttgatgaa
    26281 aacttatatc ttgctgcgag tgagcttaat aaatttagtg gtttaagagt agatgaaaaa
    26341 accatagaac aatactgcta tagtttgaat acaggaagtt ttgaaagctt ttttgagaaa
    26401 attttaaaaa aacaagactt taaaagcgaa cttgaaaaaa ttttagataa ttttaatgaa
    26461 attgctttaa ccaactcttt gtataattct ttttatcgtt tgtttaaaat cgcactttat
    26521 gctaaagtca atggtaaaat tgactttaaa gatcttttag gctatactcc acctcctcaa
    26581 gtgggacaaa atttaagctc tcaagccttt agtttaaaaa tcgaacaata taaagaaatt
    26641 ttcactcttt tgcttaaaag cgaatacgag cttaaaacca attctaagct cgtaaaaaaa
    26701 gaatttttga tttcaaattt gcttaaactt gcaaggattt tgaaaagcta aatagtaaaa
    26761 ttataaaaat taaaatcact ttttttatta taaaactaaa aaatgttgct ataatacttt
    26821 taataaaaac aaaaggaatg aaaatggatt ttgaaaatca attaaatgct atcgttgaaa
    26881 caatagctga acgcaaaaca cttgtcaata ctgaagaagc tacaaaaatg acttttataa
    26941 tgcccttttt aaaaacattg ggttatgatg tttttaatcc tagtattgtt gtgccagaat
    27001 atacagcaga tataggaact aaaaaaggcg aaaaagtgga ttatgctatt ttcaaagatt
    27061 caaaaccttt tattttaatt gaagctaaaa atcatactga aaatttagat aatcataaca
    27121 atcagcttgt aagatatttt aacactaatc ctagtattaa atttgccatt cttaccaatg
    27181 gtattgaata tagatttttt acagatattg aacaacaaaa tcttatggat aaaataccat
    27241 ttttagttgt taatcttgaa aaacttaaac ctagagatat taaagatcta aaacgtttta
    27301 tttgcactga cttaaactta gatgaaattc taagcattgc tatggagaaa aaatattacc
    27361 gaagtataca agaaattttt aaaagcgaaa tagaaaatcc aagcgatgaa tttacaagtt
    27421 tttttgctaa acaaatgaca gaaaaaagaa tgactagtgc tgttttagaa gaattcaaaa
    27481 attacattaa aaaatctttt aaagaaatta ttaatgattt agcttatgaa aaaatcacaa
    27541 gtattaaaaa caatcttcaa aacataaacg atgatgaaaa tgatgagcaa attgatgaaa
    27601 gtaaagatat tgtcacaaca gaagaagaat tacaaggttt ctatatagta aaatcaattc
    27661 ttgctagtgt cagtgccaat cttgaagatg taagttacaa agatacttta agctatttta
    27721 gtattttata tcaaggcaaa gttactaagt ggatatgtag attatatttt aatacaagca
    27781 aaaaatctat tagttttccg gatggagcaa gttataatat agaaaaatta gaagatattt
    27841 atcaatataa agcagatatt atcaaagcat ttgaaagcag aaagtaaaat catttattga
    27901 ttttactttc actccatcac aagtcgcata aggtgtaagt cctcaccttg tgtgatttta
    27961 tattctatac tttgacattt aggacactta aaaacatttt cttctaaaat acttgtttga
    28021 tcgcatttta agcataaaat ttcaagtggg gcaagttcta taaaaagttt agcattttta
    28081 caaatatttg agttttcttt aaaagtttca aaacaacgct taaaaagatc cgcttctata
    28141 ccgcttaaac gcccgatttt tacataaatt tcttgtacat tataagcctt attgtttaag
    28201 gcattttctt cacaaagttc gattaaagat tctactatac ttaattcgtg cattagcaaa
    28261 ttcttggtaa aagttcgcct ttagggcttt ctaaaaagcg ttttgcccca taagcgtttt
    28321 gtaagatcac gcgtgctttt ttctcttcta aaacttctcc tataatactc gcatttacat
    28381 tgtatttttt tagaatttcc aaggctttta actcatcttc tttttccaca caaagtataa
    28441 aagtgccttc atttgcaagt tcataagctt cataaccaaa aagctcgcaa agtcctaaaa
    28501 cctcatcttg aacgatgatt ttttcttcaa agatcaaaag atcatttccg ctttgctttg
    28561 cccactcatt taaaaccgca ctaagtcccc cgcgagtagc atctctcatt gctacaacct
    28621 ttatatcttt ttctaaaagc tctaaaacct ctttatccaa agccttacaa tcacttttaa
    28681 catcagcttc taactcattt cttttgatta aaacactagc tccatgcctt cctatatcgc
    28741 ctgaaagaag tatgctaagc cctgctttga tatttttact ttctttttta gaaataattt
    28801 cacctaaggc tgtagtgttg atataaattt catctgcttt gcccttagga acaactttag
    28861 tatcgccaca aactaacata actccacatt tttcacattc ttctttaatg ctttttaaaa
    28921 tacgttctaa tttttctagc tcaaaacctt cttctaagat aagccctaag cttagatatt
    28981 ttggcttagc acccaccatc aaaacatcgt taatagaacc acaaacacaa agttttccta
    29041 tattaacctc ttcatctaaa aaaatcggac ttaaaacaaa agaatccgtg cttaaagcca
    29101 aatttcccaa aatagcagca tcattatttg catttaaaat ttcattatca aagatcttaa
    29161 aaagcttagt taaaagctca ttcatctctt ctccgccacc tccgtgggct aaggaaatat
    29221 ttttcataca ttcacctttg agtatttata atacgccgca caagcaccct cgccagaaac
    29281 catacaactt cctataggac ttcttggcgt acaagcctta ccaaaaactt tacaatcata
    29341 aggcttggcc aaacctctta aaatttgccc acaaatacag gctttgcttt catttttact
    29401 ttgcaccgta caatcaaatt ttttactcgc atcataggcg ctaaattctt cttttagctc
    29461 caagccccca tctttaataa gtcctaagcc acgaaattca aaatcacaca ccctaaagta
    29521 tttttttact aaattttgtg ctttaatatt accttcttta cttacggctc ttttgtattg
    29581 attatacact ttaaaagtgc cttcattgct ttgttttatg atatttaaca cactttctaa
    29641 aatatcaact ggctcaaaac cactcaccgc tataggggtt ttaaactttg ctgctaaagg
    29701 ctcataaata ccataacctg taatcacact cacatgagaa gggcctaaaa aagcattgat
    29761 ttttacattt tcatcattca tgatcgcttc tacaggcgct ggaactgtga tatgattgat
    29821 atgaaaaaag acattattta ttttttcttc tataatcttt tgaagaagta aagcactcat
    29881 aggcgtagta gtttcaaaac ctatagcaaa aaagatgata tttttgttta aattttgctt
    29941 agcgatttcc aaaacctcaa gcggagaata aagcgctcta acatcagccc ctttagctct
    30001 taaatcaagc agagaaattt cacttccagg cacccttaaa agatctccta aagtacaaaa
    30061 aatcgtatct ttcatggagg ctagcttaat agctgtatca atgcgaactc ttggcataac
    30121 acaaacagga catcctggcc catggataaa gttaatttcc tttggcaaaa tagaaggcag
    30181 ggcatatttc atgatactat gcgtatgccc accgcaaatt tccatgatat tgataggatt
    30241 tttaagttct tgttctatga gtttttttaa agctaaaatg ctttctttat ctctaaattc
    30301 atcgatgaaa ttcatttaaa cccaaatctc cttcatcact ttttatctct ccactattca
    30361 ttttttctac tatttcttga taggttttaa tgctttctag tgcagcttct ttgtcgattt
    30421 tttccatagc aacgcctaca tggattaaca cataatcgcc ttgttttaaa ggctcatcaa
    30481 tcaaatccaa attaactttt cttttcacac ctaaagtttg cactaaagca ttgtttaact
    30541 catcgatttc taaaatttca gaaggtatag acaaacacat taaaaaagct cctttttaag
    30601 tttaagcacc ttataccaaa gctccatatt ggtgccattt tttgcatcaa gagtgataat
    30661 atctgctcta ggatttaatt ctttaatcaa cctagtcgcc tctttaacat caaaatcaaa
    30721 atgatgagcc aaatctgcct ttgtgattaa aactatatca gcctttttaa acatcacagg
    30781 gtatttttgc ggtttatcac ttccttcagt taccgaaagc aaaaccacat ttaaatgctc
    30841 tcctaaatca taacttgcag gacaaaccaa atttccaaca ttttctataa aaagcaaatc
    30901 cacatcatca atggctaaat gatgcaaagc ctcatgcacc ataaaagcat ccaaatgaca
    30961 gctttgccct gtagtgattt gatacgccaa agctccggca ttttttactc ttatagcgtc
    31021 attattggtt tctaaatccc cttcaatcac agcaatttta agttcatttt tcaaagcctt
    31081 gatcgtgctt tctaaaagcg tggtttttcc gctacctgga gaactcatta aattgataca
    31141 aagcgtgtta gcctcattaa aatgcgctct attgtgttta gcttcttcat catttttgct
    31201 taaaatttta gaaattactt ctatggtttt actttctttt aaacttggat tttcatggtg
    31261 gtgatcgtga tgatgatcat gcgtatggct tgaatttata gagcagccgc aatctttaca
    31321 cattttcttt cctttatatt ttttgtttca ttttaacctt aaaagcatta aaaaattatg
    31381 agtttaaaga taaaatcact ctttttttaa aaaatgcacc atttgtccta aagctatgga
    31441 gctatcattg caagggtatt ttaaaggtat aaaaaaatca aaatttttag cttttaaaat
    31501 ttcaagtaag gttttgtttt gaaaaactcc tccacttaaa agcactttta aatcataatc
    31561 tttgctaaaa tctatgataa aatttgccaa ggcattaaac atacctgtaa ttgccttagt
    31621 tttttcatct tgtaaagccc ctaggattaa atttttaaaa ttaacctgcc ctttttctac
    31681 aaaaagcttg taagaaaaat caagattttt atcataaaaa gcttcacaca ttaagccaac
    31741 ttgagcttca taagaacttt tttctaagtt aaaaacaata cttccaaaag catcgataat
    31801 gcgtcctaaa gaactcgttt gtaagttaga atgtgaataa atttttttaa gattttcaag
    31861 ttcaattttt ggaatttttg ctaaaaactc cttagcctta tcttctaaat cataatgaaa
    31921 aataagactt aaggctaaat tttgtatatt tttaatatca ctatttataa gagtgaaatt
    31981 ttcaaaatgt gcaattcttt catattcttt taaatttcct acaaaaactt ctccacccca
    32041 aattttacca tcttcgccat aacctgttcc atcacaaata aaagctaaag ccttttcatc
    32101 ttttgcaaaa ttttcttcgt attcaaaata agccgcacaa aaatgcgcat aatgatgaga
    32161 aattttaatc ctttcttcaa attcttttgc atagctaaaa tgcgggtgtt tatcgcacaa
    32221 aatcgcatca aatttcaaat cataattttg tttaaaaaat tctaaaagtt taaaaaatct
    32281 ctcatgcaca tcaagacttt tcaaatcccc tatataagga gaaattaaaa gtttattttc
    32341 ataaaaaatc acaaattcat ttttaagttc cgcacccaaa gctaaaaaag tgcctttttt
    32401 attaaaattt ctttccaaat aaaaaggatt taaacccctt gaagtacgca aaaacatagt
    32461 tttgccattt accacttgag ctatgctgtc atcacttgca ttgataattt ccctatcata
    32521 atccaaataa aaatcaaaaa ctttatcaag tttttgacgc aaattaaact catctttaat
    32581 aatactttct ccgcttaaat tcgcacttgt tgccacaaga tttcctttaa aatactcaaa
    32641 aagcaaaaga tgtaaaggcg tataagctag cataataccg attttatcta catcaggagc
    32701 gattaaagaa aaggcttttt ttgcctttaa aatcacaata ggagccaaaa ccccaccaag
    32761 caaagcttct tctttttcat ctataaaggc aagttcttta gtactttgta aatctttaca
    32821 catcaaagca aagggttttt tagggcgatt ttttctaagt cttagagttt ttaaagcttc
    32881 ttcattaaac gcatcacaca tgagatgaaa accgcccatg cctttaatgg ctaaaatttt
    32941 accttccttt aaaaacttcg cactttgtat aaaagcttct tgatctttgg ctaaaatttc
    33001 accctttgga tttttaagaa aaacattgat tttgcattta ggacaactaa taggctgggc
    33061 atgaaaacgc ctatttttag gatcttcata ttcactttta caaaactcac acatcaataa
    33121 ttcttgcata gaggtattaa atctatcata aggaagactt tttataatac taaagcgtgg
    33181 cccacaatgt gtgcaagtga taaaaggata taaaaagcgt ggattttttt catcaaaaaa
    33241 ttctttttta cactccttac aaagcgcaaa atcgcttaac ataggcgtgc tttttgtatt
    33301 ctctaaagaa ggagtaatgc taaaattctc atagtttaaa atagaaattt gcgtgattat
    33361 aagctgatct attcttgcta aaggtggaag atgatttttt aaattttcta tgaaattttc
    33421 acattctttt tgagtgcaag caaggatgat ttctatccca aaaccatcat ttcttacttc
    33481 tccaaaaagc tttgatttca aagctagttc ataaactaag gggcgaaaac ccaccccttg
    33541 aactaagcct gaaattttga tcttataccc taagtggtac atcgcttaac tgacaatttt
    33601 taagatgttt taaagtattt ttaagcaaag atttatgttc aaacaaagat ccacttataa
    33661 gcgctaaatc actttgcttt ttctctctta attcatcata agtatcacgt aagaaataag
    33721 ccaaactctc aaccgctcca taagcgatat taacactatc tacacctgct aacataaaac
    33781 tcatagcaga tcttaaggtt cttgtataat caaaactttt atcttctttc aaacgataat
    33841 caatctttac tccacgaggc atttttgact catcagcgat ttttaaaagc tcgctaacac
    33901 tctcttgtaa atttttacct aaatttaaca ctcttcctac taagccaaac aaggaataaa
    33961 aattattttg aagttcaaaa ctttcatcta aaagaggaaa ttccttgcta aaattttcta
    34021 aaagccttgc accaatttca tcttttttaa tctcttcata aagctctttg ctgtgttttg
    34081 gtaagcaaag tttaagtaaa ttaagctctt tgttgataag caaaatatct tcataatcct
    34141 tacttagctc taaaataaaa gctttttctt tataacggct tacaagataa gaaattcttg
    34201 ccatattttt atcttcttta gaaaaaataa gctctcttgc cttagcattg ataaattcaa
    34261 aaccctctaa aaccaccact tgctcatcta aagcactgat ataaaaatct ttttgatact
    34321 cttctatctt ttttacgctt aaaaatttat actcattttc aaaaagtttc aaacctaaag
    34381 caaaacaaaa caaatctcta gcaagtctga ttttaaaatc actaaaatca agattgtgat
    34441 tttttctaaa catagcatta agccttagct tcatcaaagg tttttctaaa cttgcaagaa
    34501 gttttaaatt ttcatttgaa caaacaaaaa ctgaatttat agccttaata tcacaaggaa
    34561 gtaaaaaatc tcctataaat tcgttcttaa acaaagaaaa ttcataaatg ccatttttat
    34621 ctttcaaata aatctttttt tcttgactta acaaatcaaa ggcaagattt aaaaaagtat
    34681 tgaaattttc ttcattgatt ttttcaaatt ctgataaatt gcttgaaaat tcacactcac
    34741 aaaacacgcc ccattcgttt ttgtttaaaa gttttttttc ttgataagca ttagaattta
    34801 aatgagtaat ataagaaaat cttgaaaatt ctttatcttc tggtatacaa gggttaaaac
    34861 cctgccccgc ttttacatca aattttttca aaaaaacgct atgactcatg aaattcaaag
    34921 aatcacaaaa agtctttaaa ttttcttcat ctgcatcgat agaaaaatga taggtatttt
    34981 cttctttgct aaggatataa ttgtaatttt tcgcataaaa acgcaataaa tattcaaaaa
    35041 tatcattatc tgcattataa ataaaatcaa aatccaaagt catattatgc cttttttgaa
    35101 aaataaacta taaatataac atttttaact taaaaattct ttctctcttt gcctaaaatc
    35161 actcataaaa tgctctataa aagtataaaa ttctttgcta tgattgggga attttaaatg
    35221 gctgatttca tgcaaaatca catattcaat agctcttaaa ctcttttgaa tgagttttaa
    35281 atttaaatta acataagctt tattgtgatt acatgaaccc caacgcgttt tcatattttt
    35341 aatgcttaaa tgcgtgtaaa ataaacctgt tttttgactc cattttttaa gataaaaagt
    35401 aaaaatcttt ttagcatttt gtcttaaaaa taaatctaat tttgctttat tttgacaaag
    35461 aattttatct ttattaaaat aagttttttt gacattttca tcaaaaataa tttgatattt
    35521 tttagctaaa aagattaact catcatcttt taaggctttt tttcaaatct tttttttgcc
    35581 tcattcatcc aagaacttga tttatctaaa aactcataaa cacttttaaa ggtgcaaaaa
    35641 taaggaatac taagaacaaa ttcacccttt tcatttagcc ttaatcttaa agtttttatg
    35701 cattttttag aataaaaata gcactcatct ttataaataa atgattttaa actagagctt
    35761 tgccttgcca ttttttactt ttccatctgt atgaatttac cattccacgc aaaaactcat
    35821 ctgcacaaaa tcctatccaa acccctaaaa ttccaagatt aaaatgaaaa caaagcacat
    35881 aacccacagg caaagatacc cccatcataa aaacaagtcc gctaaaaaat ggaaacttag
    35941 catcgccact tgcgcgcaag gaattaacca taactatatt aaaagttcgt gaaatttcaa
    36001 gaaagattga aagagcaaat aaaggtatca ttaaattttt tagctcttct ttaagcccta
    36061 aaatttgcat agtaaaatct tgacaaagat agtttaaaaa cgccactaaa gcactcgcta
    36121 ttacactaaa atataaagca cgccaagcat gtttgtaagc gatattttca tacctagcac
    36181 cgactaattt acctactata atttcattag ctatgctcgt agcttgtcct ataagcatga
    36241 taagcattga aatttgaaaa taaatcgttt gcacactcaa actcgcctcg cctaaacttg
    36301 ctacaaaagc aaaagctata gtgtattgga ctatccacaa aagattttcc cctgctgaaa
    36361 atccacctat atttaaaacc ttttttaaaa cttctttttc aagttttatc atttctttga
    36421 ttttaagatg aattttaagt ttataaaaaa gtatcgcaaa caaagcaact atagcaacaa
    36481 tgcgagcaaa aatattgcta agccctactc caaaaagttc tgactttgta taatgcaaaa
    36541 cataataatt tccacaaatc accactatat ccatcaaaaa acctataaac atgacccaat
    36601 aagccatatt ataaaccctt acaatagcag ctaaaacaat acctatggca tcaaaaaaca
    36661 aacaaattgc aagcatatgt aagtaaattt cgctatcttt gagcaattct tgtggaattt
    36721 ttaaaagata aagcaaatac tccccatgcc ataaaataag cacaccgcat acaaagccta
    36781 aaagtgcatt taagaacaaa ctttgatgaa tcacttttct tgctaaaaca tgatcttttg
    36841 caccaattgc ttgtgcgatc agcacactac aacccacact taaaaatgaa aaaatagtga
    36901 taaaaagatc taaaatttga tttccagcgc ccatagcacc aacaagaaaa ttagaataat
    36961 gcgacaccat agcggtattg ataatcacgg ttaaatactt agaaagcaaa tcccaaaata
    37021 taggaaaact aagtcttgtt aaggagagtt gtttttttgc catgatatta tcttatctct
    37081 ttttttaaat atttctttta aaaaaca
//
LOCUS       DAZBIH010000006        35521 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.006, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000006 DAZBIH010000000
VERSION     DAZBIH010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35521)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35521)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35521
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.006"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(77..634)
                     /locus_tag="ACHFOB_000214"
     CDS             complement(77..634)
                     /locus_tag="ACHFOB_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:acceptor oxidoreductase family
                     protein"
                     /protein_id="HFN5799051.1"
                     /translation="MKYQLRFGGEGGQGVITAGEILAEAAIKEGRQAFKASTYTSQVR
                     GGPTKVDIIIDDKEILFPYAVEGEVDFMLSTADKGYKGFRGGVKEGGIIVVEPNLVHP
                     ESEDYKKWQIFEIPIITIAKDEVGNVATQSVVALAIAAYMSKCIDLDVLKDTMLHMVP
                     AKTRDANAKAFDLGVKYATQAKPHS"
     gene            complement(631..1476)
                     /locus_tag="ACHFOB_000215"
     CDS             complement(631..1476)
                     /locus_tag="ACHFOB_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HFN5799052.1"
                     /translation="MAFNYDEYLRTDKLPTQWCWGCGDGVVLKCIIRAIEKLGWNMDD
                     VCLVSGIGCSGRMSSYVNCNTVHTTHGRAIAYATGIKLANPSKHVIVVSGDGDTLAIG
                     GNHTIHGCRRNIDLTHIVINNFIYGLTNSQTSPTTPKGFYTVTAQFGNIDPNFDACEL
                     TKAAGASFVARGNVIEANKLENLIYKALAHKGYSFVDVFSNCHINLGRKNKMGEAVAM
                     LDWIKNRVVDKSKFESMDFEERKDKFPTGILHEDNSQPEYCHAYEEVRRAAKEKRMVD
                     LGALK"
     gene            complement(1478..2602)
                     /locus_tag="ACHFOB_000216"
     CDS             complement(1478..2602)
                     /locus_tag="ACHFOB_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate synthase subunit alpha"
                     /protein_id="HFN5799053.1"
                     /translation="MREVIATGNVLIAKAAIDCGCKFFGGYPITPSSEIAHELSHMLP
                     ANDGTFIQMEDEISGISVAIGAAMSGVKSMTASSGPGISLKAEQIGLAFIAEIPLVIV
                     NVMRGGPSTGLPTRVAQGDLFQAKAPTHGDFASVAIAPASLEEAYTETIRAFNLAEKY
                     MTPVFLLMDETVGHMNGKAVLPDLKDIEIINRKKFTGDKKDYKPYAAGENEPATLNPF
                     FTGYRYHVTGLHHGDIGFPTEDGAIVKKNMERLIGKIKNNQDDICTYEEYMLDDAEFL
                     IIAYGSVSRSAKEAINRLREEGIKVGLFRPITLYPVAEKKIAEVVNKFKKVMVSELNM
                     GQYLEEIERVSSRRDFISLHRANGRPITPSEIIAKVKENI"
     gene            complement(2611..2922)
                     /locus_tag="ACHFOB_000217"
     CDS             complement(2611..2922)
                     /locus_tag="ACHFOB_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HFN5799054.1"
                     /translation="MSMTAPKDTPVWVDEHRCKACNICVSYCPAGVLAMRDDVHAVLG
                     QMIEVVHPESCIGCTECETHCPDFAIMVAKRDEFKFAKLTAEAKDRAVAVKNNKYKKL
                     A"
     gene            complement(2936..3805)
                     /gene="sucD"
                     /locus_tag="ACHFOB_000218"
     CDS             complement(2936..3805)
                     /gene="sucD"
                     /locus_tag="ACHFOB_000218"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HFN5799055.1"
                     /translation="MSILVNKNTKVIVQGFTGKEATFHAEQCMAYGTNIVGGVTPHKG
                     GQTHLGKPVFDTVADAVKATKADVSLIFVPAFAVGDSVIEAADAGIKLAVVITEHTPV
                     KDMMFAKQYANKKGMKIIGPNCPGIITSEECKLGIMPGFIFKKGCVGLISKSGTLTYE
                     AANQVVQGGYGISTAVGIGGDPIIGLAYKELLSEFQKDDETKAIVMIGEIGGSLEVEA
                     AKFIKENISKPVVAFIAGATAPKGKRMGHAGAIVGSADESAAAKKEALKSYGIHVVDS
                     PALIGEEIQKILG"
     gene            complement(3815..4978)
                     /gene="sucC"
                     /locus_tag="ACHFOB_000219"
     CDS             complement(3815..4978)
                     /gene="sucC"
                     /locus_tag="ACHFOB_000219"
                     /EC_number="6.2.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-forming succinate--CoA ligase subunit beta"
                     /protein_id="HFN5799056.1"
                     /translation="MNIHEYQAKAIFADNSIPTLKGKVAFSVDEAVANAKELGGSVWA
                     VKAQIHAGGRGLGGGVKIAKNLDEVKDYASKILGMNLVTHQTGPEGKLVQKLYIESGA
                     NIVKEYYLAILFNRMAEQITIIASSEGGMDIEKVAKESPEKIAKVGIDPQIGFKMFHG
                     LEVAKVLGLDKDESKKLISMIAKLYKLYMDKDMNMLEINPLIKTAEGDFYALDAKCSF
                     DDSALYRHPEIAELRDITEENPAEREAAEFGLSYVKLDGDVACMVNGAGLAMATMDII
                     NYSGAKPANFLDVGGGASAETVAKAFEIILRDKNVKVIFINIFGGIVRCDRIANGILE
                     ATKNVEVNIPIVVRLDGTNAAEAKTILDNSNLKNIKAATNLKNGAELVKSLVG"
     gene            complement(4979..5881)
                     /locus_tag="ACHFOB_000220"
     CDS             complement(4979..5881)
                     /locus_tag="ACHFOB_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HFN5799057.1"
                     /translation="MKITVIGAGNVGSSVAYALILREIANEIVLVDINEDLLYAKELE
                     LTQSIAALNLNIDLLCAKDYTHTKNSDIVLFSAGFARKDGQSREELLQLNTSIMLDCA
                     KKIKDFTEDPLFIILTNPVDFLLNTLYESGIFSSKKIIAMAGVLDNARFKYELAKKLN
                     VKMSSVDTRLIGFHNDDMVLVKSYASVKNKNISEFLNEEEFDDLENEVKTGGAKVIKH
                     LKTSAYLAPASACIRMLESIRSGEFLPMSVILHGEFGVQNKALGVMARLGLEGVIEIM
                     KMDLSLQEKDKLEKSLIKYQYKGE"
     gene            complement(5878..8082)
                     /locus_tag="ACHFOB_000221"
     CDS             complement(5878..8082)
                     /locus_tag="ACHFOB_000221"
                     /EC_number="1.1.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004450 - isocitrate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HFN5799058.1"
                     /translation="MQITYTLTDESPALATYSFLPIVKAFLSRAHIGVKTSDISLSGR
                     ILATFSEYLKEEQRCEDALELLGELVKRSDANLIKTPNISASIPQLKAAIKELQDKGY
                     MLPNYPDEPKNDEELQIKTKYQKVLGSAVNPVLRQGNSDRRSTKAVKDYAKNNPYRVV
                     EFNPNSKTRVSYMKEGDFFSNEKAVLIDQDCVANIEFTSVDGKNEILKEGLKLEKNEI
                     LDATFMDVQKLQEFYAKEIKASKDDDVLFSLHLKATMMKVSDPILFGYAVKVFFKELF
                     IEFQDEFEKLGINPNNGLSELLSKIENSSKKDEILKKYNEILAKSADISMVNSDKGIT
                     NLHVPSDVIVDASMPAMLKNGARLWDKEGKEKDTNAVIPDQTYATIYEAVIEDLHKNG
                     TLNPSKLGSVSNVGLMAKKAQEYGSHDKTFVAKEEGTFKIVSNGKVLLEHKVRKGDIY
                     RANQAKFDAVLNWIDLGIERSELSGAEAIFWLDSKRASNKIMITLVQNRLKEKGKNIA
                     ILTPKEACLRSLELIREGKDVISITGNVLRDYLTDLFPILELGTSAKMLSVVPMLKGG
                     AMFETGAGGSAPKQVEQLVEENHLRWDSLGEFLALQASLEFYANKCSNHKAKVLAECL
                     DEAIGEWLENNKAPSRKVKEDDNRTSHFYLAMYFANHLARQASDMELQSFFKDIALEL
                     SSNEEKIRAEFNNAQGVKVDLGGYYKFDDEKANKIMRPSATFNAILEKIGQR"
     gene            complement(8199..10769)
                     /locus_tag="ACHFOB_000222"
     CDS             complement(8199..10769)
                     /locus_tag="ACHFOB_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AsmA-like C-terminal domain-containing protein"
                     /protein_id="HFN5799059.1"
                     /translation="MKKKILYIVVFFVVLILALFIVLKNGIVISSIQFDFLKLEQLYI
                     KLDKKLIVRAKNITINETQNSEISSQTHSSDNASTEILKITKNLKYLYTFVEEIDIQN
                     LNIKDNHVRILFKDNEFFIDNDLLFLKLTLQRQNKELIADIKKLLLKDYDLNIDGNLS
                     INTKSEFYYFQGRASGELFDFNASISYKDKNLAYKIEDLNIRNITEIFKRVNKRIELP
                     QSLNLWVAYRAKGEFYHLDYLQGFIDFTKDNYYLDNISASGYVNNVKVRLDDKMNAIE
                     IPKLDLNLNKQKLDFVFNKAFYNGADLSSSKVYLYDLFDEKKAGIYLRIKSDNLKFDE
                     KLAKALEDYHFSLPFYQKSGKIKSDLELKIDFHDKGEISYSGILALENASISLADFNI
                     TKAFVKLNQNDLNIENASVKNGFLEADFNAKFDLQKQQGNFNTQISRLYFDNGELLDL
                     KNQNAEVKLDYSQNVNISIPQWNLILNFKDGLEANLNNPKILFSFSPLLKKFGFIDAK
                     NVYYKTLNFEDFNASVNDAYFKNNLLINGQTPYENDSFDIVKNKGIMEIHTQSDTASA
                     KISSDNKEIHLKNLSYIYKKDSNSSNSTFDISTNTQNISFGGANVALILPDSNKTLAF
                     DRVEADLKGNALDLKGSRGNAKFDLYYSSNDLNLNVSNIDDNYLNEFLQKQAVQDGVF
                     NLSIKGSGLEYFDGQIDFKNTYVKDLRGINQLISFIDTVPSLLMFKSPTFNQKGLSLH
                     DGKIIFNRKKDLLSVLAINLNGDSVDIYGLGSANLRLNTVDFSLELKTLKSASEAISK
                     VPILNYVILGKNQEISTNLKIDGSIDDPKFHTEILTDTLKTPFNLIKNIIQLPANLLN
                     "
     gene            10684..11685
                     /gene="mltG"
                     /locus_tag="ACHFOB_000223"
     CDS             10684..11685
                     /gene="mltG"
                     /locus_tag="ACHFOB_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008932 - lytic endotransglycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HFN5799060.1"
                     /translation="MTIPFLSTINKANISTTKNTTIYKIFFFIRNFFLIFILGIFYYL
                     TQPLKSNSVVFIPQGSISQIITYLKQNKYQMSSIDKYILFFLGHPQSGWINIGTKDLN
                     RAEFLHKLTIAKAALQTITLIPGETSVIFLEQAAKQLELDKDMLLKEFQAQAPYDEGV
                     FLPETYKIPKGITENLLIQMLLNHAEISNKKTSEKIFGDYNPKKWHQYIIIASVIQKE
                     AANDNEMPIVASVIYNRLKKGMKLQMDGTLNYGIYSHVKVTPQRIRQDNSSYNTYKFT
                     GLPKEAVCNVSLAAIRAAIFPLKTDYLYFVRDKNTGVHIFSTNIDDHNKAINLQKGK"
     gene            11765..12196
                     /gene="flgB"
                     /locus_tag="ACHFOB_000224"
     CDS             11765..12196
                     /gene="flgB"
                     /locus_tag="ACHFOB_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HFN5799061.1"
                     /translation="MINPFKSKELVTGALAGRNLRNQLINANLANVDTPFYKARDIEF
                     ETALVNRANEIFKKNDNKELQLAVTEEGHQKPWKFPDPSKSTIYLRDGHLARNDANTV
                     DLDVETTEMSKNTVMITALDGVLRRQSNIFSSILDASSKLS"
     gene            12206..12700
                     /gene="flgC"
                     /locus_tag="ACHFOB_000225"
     CDS             12206..12700
                     /gene="flgC"
                     /locus_tag="ACHFOB_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030694 - bacterial-type flagellum basal
                     body, rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HFN5799062.1"
                     /translation="MAYLSDFDISGYGLSAQRFRMNVISSNIANANTTRTAEGGPYRR
                     REVIFKATDFDKLLNEQINKDNNFLKYENPLNDPSSPEEAKPPIQSVVVDKVVRDDKD
                     FRMKYDPSHPDANAEGYVAYPNVNPVIEMADLIEATRAYQANVSAFTSAKTIAQSAID
                     LLRG"
     gene            12707..13003
                     /gene="fliE"
                     /locus_tag="ACHFOB_000226"
     CDS             12707..13003
                     /gene="fliE"
                     /locus_tag="ACHFOB_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HFN5799063.1"
                     /translation="MNNINDLRLNNNISNTNKSQNSTGIGDEFAKMLKNEIDDLNKAQ
                     ESGEAAMTDIATGQVKDLHQAAIAITKAESSMKFMLEVRNKAISAYKEITRTQI"
     gene            13010..14818
                     /locus_tag="ACHFOB_000227"
     CDS             13010..14818
                     /locus_tag="ACHFOB_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008658 - penicillin binding [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan D,D-transpeptidase FtsI family
                     protein"
                     /protein_id="HFN5799064.1"
                     /translation="MQEYKKNRVSKVAFAYCMALLFMIIFISSTFFLTSKRHIPNTEK
                     DQYALALRGSIITKDNFTITSSKQIYRAEIDLRSINKDKFDLFLKLFQIYSGISNDQV
                     ADIKKRMQNQKKRSYNFVLLQNLDSKQASYLKDLAKKLYIQGFFKAFTNNSGRVETRG
                     LNIIEHEEDRIYMSKDSFTPIIGYTKMILDPESGILKNIGVKGLEKYYDECLSPVQNE
                     KIQGLKDIGGNIILNLNSLQQKKINGCDLYLNLSLKLQKSIEKAIDQRNEDLKANEII
                     VGVMESKTGRILALASSRRYDPQNRGKDLSVLNASAIEYGYEAGSVIKPFIFTTALRL
                     GKIKMDEVINTYGGSYKLGRFTIKDDHKMDKMTMEEVIRYSSNIGMIQIAKRLNNIEI
                     VSGLKIFKFGEKSGIDLPYEQKGEIPNPKRLRDIEKSVLSYGYGLKTTFMQLLAAYNV
                     FNNDGFYITPRLAEKFYQNGRFTNLDDDVKKEKILSSEAAKTMQNVLINVIEKGTGKK
                     AITQGIIAGGKTGTARIAERQGYTSNRYNASFFGFANDLNHAYTIGVLVRHPTKPYSY
                     YAAQSALPMFKDVVDILINEEFLTPIQDNNQTSTNN"
     gene            complement(14815..16584)
                     /locus_tag="ACHFOB_000228"
     CDS             complement(14815..16584)
                     /locus_tag="ACHFOB_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005436 - sodium:phosphate symporter
                     activity [Evidence IEA];
                     GO_process: GO:0044341 - sodium-dependent phosphate
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HFN5799065.1"
                     /translation="MQEERNSLKYFKFISWSIFTLVLIFILIRYDELANLLAGVAILL
                     IGMTNLGIGFKAFSGGLLEKILAKSTDTKIKSILFGTLSTLIMQSSTLVSIITISFLS
                     AGLISLGAGIGIIFGANLGNTASSWLIVGLTNIKISMLAIPLLIIGVLFFFQKDSVLK
                     GLGNIFIGIGFFFLGVDYIKSGFENFKHIIDLSRFDFAGFKGVFVFLGLGALLTGVIQ
                     SSTATMAIIVAALLAGQISLENSLAATLGTSVGGVVTAVLASLSTNIEGKKLAFANCI
                     FNFGIAFLIVLIFPYFIHFLNFLSIVLNIEDIALKVALFHTLFNLIGVVLFSFFTPQI
                     VLFLNKIVKAPKDKNKDKPLYLDSSLVKFSDTAIESLRKESEHLYNNTYAIVAHAIGF
                     SRKDIQSDKSFKEILENKKWFSKNVDLDYLYQTRIKVLFEAIIDFSTKAQVYINDETK
                     NHKIFTFKMAAKNLAETTKNLKIIQANIKKYSSSSNEFLALEYNKIRSNLGELLRSIE
                     ELRVVEDREKLYLIIKNLQKGKEILKEIDTLTLSNVEHLISVRKITTAEGISILNDTT
                     FAAKIAEELIGAVEVIFSKDISN"
     gene            complement(16588..17022)
                     /locus_tag="ACHFOB_000229"
     CDS             complement(16588..17022)
                     /locus_tag="ACHFOB_000229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799066.1"
                     /translation="MLGIYLLIAALSFLALYFAVKKLTLNIDERTLLEPIKMDIYPKF
                     CDLIDEKIREFKENVQNANLALKISDQKDEFLEKLGDLSRELTFIQTMNLSNKNDSIW
                     QNELFSFLKELENLLLEYLEKGEEEAEILREFLMNEFEKLKG"
     gene            complement(17022..17339)
                     /locus_tag="ACHFOB_000230"
     CDS             complement(17022..17339)
                     /locus_tag="ACHFOB_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HFN5799067.1"
                     /translation="MIENIPASLWTKQDLNAYQIFDVRTPLEWEEGVLPNAQCVALYD
                     NQGLLNAKFLDEFQSKRDENKKLAFICRSGHRSMVAAEFIAEKLGLESINLDGGMLAL
                     KGY"
     gene            complement(17336..19162)
                     /gene="htpG"
                     /locus_tag="ACHFOB_000231"
     CDS             complement(17336..19162)
                     /gene="htpG"
                     /locus_tag="ACHFOB_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone HtpG"
                     /protein_id="HFN5799068.1"
                     /translation="MQFQTEVNQLLQLMIHSLYSNKEIFLRELISNASDALDKLNFLS
                     VSDDKYKSLKFEPKIEIKIDKDKKTLSISDNGIGMDKDDLINNLGTIAKSGTKSFLEN
                     LSGDAKKDSQLIGQFGVGFYSAFMVASKIEVLSKKALDDKAYLWSSDANGYEIDDANK
                     EEQGTSITLYLKDDEFANAYKIESIIEKYSNHIQFPIFMEKEEFTPAKEGEEEGKTEL
                     KISQINKANALWRMQKSSLKAEDYERFYEQNFHDSNKPLLYLHTKSEGKLEYNSLFFI
                     PQNAPFDLFRVDYQSGLKLYVKRVFISDDDKELLPTYLRFVRGIIDVEDLPLNVSREI
                     LQENQILKGVKEASVKKILGELEKLKNNDKEKYLSFFKTFGKVLKEGLYGFGGEKDSL
                     LKLMLYKSTKGENLRSLEEYKNDLQGEQKEIFYIAGNNESLLRTSPLLEEYKQKNIEV
                     LLMDDEIDSLVTPMLEFEGLKFVAINQVEDKNELSDEEKNTFAPLVAKFKELLKDQVE
                     DVRLTSRLKDSPSCIVYDKNKPDFAMQQLLKQMGQEQNFKPILEINPKHAIFTGLKNN
                     ESFSADIATLVLNMAKLSEGMGVDNPAEFNASLTKIINKAFS"
     gene            complement(19234..19602)
                     /gene="crcB"
                     /locus_tag="ACHFOB_000232"
     CDS             complement(19234..19602)
                     /gene="crcB"
                     /locus_tag="ACHFOB_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:1903425 - fluoride transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:1903424 - fluoride transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HFN5799069.1"
                     /translation="MLNTLLVVGFGGFIGAILRMLSINLVNKFFPYSISFGTLFVNVL
                     GSFIIGLLFSYAQNKGLSPLLKSFISTGFLGAFTTFSTFSYQNLLLLQSGNYLHFALN
                     IILNVFLCLFAAWLGFLIFK"
     gene            complement(19596..20288)
                     /locus_tag="ACHFOB_000233"
     CDS             complement(19596..20288)
                     /locus_tag="ACHFOB_000233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFN5799070.1"
                     /translation="MIYKKIKALYFWIFFVLSVALVIFCFCFTKSQNTLWKIRKIWAK
                     FQRYTISYKQEIIGTFNPQAQMILMNHQSALDIIALEELYPKNLCWIAKKELGEIPIF
                     KVAMKKPKLLCIDRKNPRDLVRVLKEAKERISEDRVLAIFPEGTRSKNEKMLKFQSGA
                     KILSEKLNLKVQPILIVDSAKILDTKSFSASSGVLKIICMDLVDTNDEKWLENTRKKM
                     QELLDQERAKLC"
     gene            complement(20269..21465)
                     /locus_tag="ACHFOB_000234"
     CDS             complement(20269..21465)
                     /locus_tag="ACHFOB_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799071.1"
                     /translation="MKILLTLIFSVVVLFGRGEISVFSGQDENMQKELQKLPQEEQKI
                     YQNIPPSDENNDFESNVDDPFVAKGSLVLTNDEYPSKVYVGEVFPITIYARTTENTKF
                     DFNISVEKTNLSFLNPDAKWEFINNEYKTTLWFEAKNSNASLSKISIKLLRNNEAFQE
                     ADINLNPIKFENTLFNKDFSHLVASSLEIKKVKASYFDDANIIMMVELNATNTNLKSF
                     FIEGIQKQGIENLKGDFNASSAFYYAILPLSKTNFEFSYFNKDSKKLENINLKLKISD
                     DEISTQSDLNPVNKDLNIYKQYALWFLAVLFGVLFVWRKNYIILALAVVCFALSFLVD
                     TNTQNAIIKAGSRAKILPTEPSTYFYTANADEKVEVLGKRQNYIKVLFSDGKIGWVNK
                     DDLQKN"
     gene            complement(21437..22109)
                     /gene="purQ"
                     /locus_tag="ACHFOB_000235"
                     /pseudo
     CDS             complement(21437..22109)
                     /gene="purQ"
                     /locus_tag="ACHFOB_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343946.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase I"
     gene            complement(22111..22356)
                     /gene="purS"
                     /locus_tag="ACHFOB_000236"
     CDS             complement(22111..22356)
                     /gene="purS"
                     /locus_tag="ACHFOB_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HFN5799072.1"
                     /translation="MEVIVNISLKNGVLDPQGKAVEKALHSLNFNSVKEVKIAKQIKI
                     SLDEKDEKLAKEQVKKMCEELLVNSVIEDYELVIEKE"
     gene            complement(22365..23075)
                     /gene="purC"
                     /locus_tag="ACHFOB_000237"
     CDS             complement(22365..23075)
                     /gene="purC"
                     /locus_tag="ACHFOB_000237"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HFN5799073.1"
                     /translation="MTKKEMLYEGKGKKLFKTDDENLLISEFKDDLTAFNAEKRGNES
                     GKGALNCKISTEIFHLLEKNGIKTHLVETISDTEQVVKKCKIVPIEVIVRNVATGSLT
                     KRLGIKDGTVLPFALVEFCLKDDALGDPFINDEHCLILNLVQNEAQISEIKNMARKIN
                     SILTPFFDNKNLRLIDFKIELGLTKDNELVLADEISPDSCRFWDKFSNEKLDKDRFRQ
                     DLGNVKMAYEEVLKRILN"
     gene            complement(23077..24411)
                     /locus_tag="ACHFOB_000238"
     CDS             complement(23077..24411)
                     /locus_tag="ACHFOB_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HFN5799074.1"
                     /translation="MMELILKTKRFFAGLAGFATTFILCLFLTSHLQAKVDQKEEQVQ
                     KRLEALDKLTKTLAIIEQYYVDDQNISDLVDKSLSGLLSNLDAHSSFLNEKDFNDMKI
                     QTNGEFGGLGITVGMKDGALTVVSPIEGTPADKAGIKSGDIILKINDEATLGINLNDA
                     VDKMRGKPKTQITLTIFRKGATKPFDVTLTREIIKIESVYAKMIENENILYLRVTNFD
                     KNVVDVASKELKKYPNVRGVILDLRNNPGGLLNQAIGLVNLFVDKGVIVSQKGRITSE
                     NQEYKADPKNKISDVSLAVLVNGGSASASEIVSGALQDLKRGVIVGENTFGKGSVQQI
                     IPINKTEALRLTIARYYLPSGRTIQAVGVKPDIEVFPGKVNTQEDGFSIKESDLKQHL
                     ESELEKIDKNKKEDKQENKDNKNLISQKQINDDAQLKSAIDTIKILNIKQGQ"
     gene            24529..24819
                     /locus_tag="ACHFOB_000239"
     CDS             24529..24819
                     /locus_tag="ACHFOB_000239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensing transcriptional repressor"
                     /protein_id="HFN5799075.1"
                     /translation="MCQEKHTHTHSQKHLKAVCNRLSRTIGHLSAIKRMVENDKDCSE
                     ILIQLAAVKAEVNNTAKVVLKEHLAHCMVHAIEENDIQSIEELNKAIDMFMK"
     gene            24931..27504
                     /locus_tag="ACHFOB_000240"
     CDS             24931..27504
                     /locus_tag="ACHFOB_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5799076.1"
                     /translation="MANIQDFLTDNMLSNLESAASLAIHSKNTEVVPLHLLWALSVDS
                     TSILNQILNKLNISKEALELEIKSRISKLATSSNVNRENIRFSNELINSLENAKGLMS
                     ANGDSYLSVDTWLISESQKSPIKEILAQFLDLREFQKELESLRAGRKMDSKTSDETLD
                     SLNKFGIDLTLKASEGKLDPVIGREEEIERLMQILIRKTKNNPILLGEPGVGKTAIVE
                     ALAQRIIKKDVPKSLQNKKVIALDMSALIAGAKYRGEFEDRLKAVVNEVIKSENIILF
                     IDEIHTIVGAGATEGSMDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQ
                     PVNVGEPSVNEALAMLRGIKEKLEIHHNVTINDSALVAAAKLSKRYITDRFLPDKAID
                     LIDEAAAELKMQIESEPSSLRKVRKDIETLEVENEALKMENDEKNQKRLDEIAKELAN
                     LKEKQNALNSQFENEKSVFDGISAKKKEIDLLKNEASLAKARGEFQKAAELEYGKIPS
                     LEKEVEILEDKWKKMSENGVLLKNQVDEDLVAGILSKWTGISVQKMLTSEKQKFLEVE
                     KHLKESVIGQDKALSALARAIKRNKAGLNADNKPIGSFLFLGPTGVGKTQSAKALAKF
                     LFDDEKAMIRFDMSEFMEKHSVSRLLGAPPGYIGHEEGGELTEAVRRKPYSVLLFDEV
                     EKAHKDVFNVLLGILDDGRATDSKGVTVDFKNTIIILTSNIASSAIMNLSGKEQEDAV
                     KNELKNFFKPEFLNRLDDIITFNPLGKDEAYEIVKLLFKDLQMSLENKGIKASLSENA
                     ALLIAKDGFDPDFGARPLRRAIYDLIEDKLSDMILADELHENDSIIIDAKDDEIIIKK
                     A"
     gene            complement(27532..29463)
                     /locus_tag="ACHFOB_000241"
     CDS             complement(27532..29463)
                     /locus_tag="ACHFOB_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HFN5799077.1"
                     /translation="MKILKYIFSFFTLLFIAGFIYVAYLFTSADTEGYTFKEYKPPLT
                     TQIYDRNGKLVANIFEQHRFYAPYEELPPRLIEALVAIEDTSFFEHNGVNIDAIFRAA
                     VKIIKSGGKTMEGASTLTQQFIKNTELTPERTITRKIREALLAYKMETILTKEQILER
                     YLNFIFFGHGYYGVKTAALGYFHKNLNELSLKEIAMLVGMPKAPSSYDPTKHLDLSIS
                     RANNVISRMYNLGWISKADYDTAIKEIPQVYDDTLTQNAAPYVVDEVIKQLSPNIKDL
                     KTGGYKIILNIDLDVQNMAQNALKFGYDEIVKRDKDANLSTLNGAMVVVNHQSGDVLA
                     LVGGVDYEKSNYNRATQSMRQPGSSFKPFVYQVAINLGYSPMSEIADISRIFEGGAGN
                     NEDWKPKNEGGKFLGLITLKEALTRSRNLATINLALDMGLDVLYSKLMEFGFKDIPPN
                     LSIVLGSFGISPLEYSKFYTMFGNYGTIKDPQIIRQVQDKTGKTIMEFNSNERKVSDE
                     AQSFLVLDMMRNVVEKGTGRNARVKDIEIAGKTGTTNKSVDAWFCGLTPEIEAIIWYG
                     NDNNKPMRYTEGGARTAAPVFREFLTQYIEKFPDTTRKFSIPNGVYRGNYKGESAYYT
                     TKSPLPKANMKFNESEIIF"
     gene            complement(29460..30011)
                     /gene="maf"
                     /locus_tag="ACHFOB_000242"
     CDS             complement(29460..30011)
                     /gene="maf"
                     /locus_tag="ACHFOB_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047429 - nucleoside triphosphate
                     diphosphatase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation inhibitor Maf"
                     /protein_id="HFN5799078.1"
                     /translation="MLILASSSISRANLLKTAKIDFRQVSFDYDENLNKNISPFLYVQ
                     KIVLEKERQFLSTLGKDFQNQNLLFADSIVCIDEKILTKAKDKKEAYEMLALQNGKYA
                     SILSAFLLVKPEKRVFSLSKTTLYFKNFDENALRDYVENDLYKGKAGCIMCEGFHQNF
                     ITQQVGNLSTALGLDIQTLKAYL"
     gene            complement(30011..32539)
                     /gene="alaS"
                     /locus_tag="ACHFOB_000243"
     CDS             complement(30011..32539)
                     /gene="alaS"
                     /locus_tag="ACHFOB_000243"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HFN5799079.1"
                     /translation="MDIRKAYLDFFASKGHEITPSSPLVPDDATLLFANAGMVPFKSI
                     FTGEIPRPNPPRKTSCQTCIRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKEQA
                     IAYAWEFVTEVLKLPKDRLYVTVHENDDEAFNLWQKHIQKERIYKFGDKDNFWQMGDT
                     GPCGPCSEIFYDQGEEHFNSSEDYMGGDGDRFLEIWNLVFMQYERSADGVLSPLPKPS
                     IDTGMGLERVTAIKEGKFSNFDSSLFMPIINEISKLCNKTYIYESGASFRVIADHIRS
                     SVFLLAQGVSFDKEGRGYVLRRILRRALRHGYLLGFKQAFMYKLVDIVCDLMGGHYTY
                     LNEKKDFIKEQIRLEEERFLSTIENGIEIFNEELKNTKEIFSGEVAFKLYDTYGFPLD
                     LTADMLREKNLKVDEEKFELLMNEQKARAKASWKGSGDKTASGDFKNLLEKFGENHFV
                     GYEKAECESKILALLDEDFKEVSTLKDAGWVMLENTPFYATSGGQSADSGFIAKREVL
                     DTQKFFNLNLSFVKAGEELKVGDIVHARIDTEKREQIARHHSATHLLHHALREILGSH
                     VSQAGSLVESNKLRFDFTHHKALNKEELESIEKRVNEMIINSSEAILENMPLEEAKKS
                     GAIALFNEKYQGNVRVLTLGESKELCGGTHVKNTAQIGSFYIVKESGVSAGVRRIEAV
                     VSKAALEFVKNQLEELSKVKDELKNNDILNGVKKLKNEILSLKNELKNSSKTELDSKN
                     IQGVEICVKRIDNGDIKAMIDDFKNKFAKAVILLIQVKDEKITLAAGVKDAPLKAGAL
                     VKEAAQILGGNGGGRDDFATAGGKDLSKINEALKQSLETIEKAL"
     gene            32654..33727
                     /locus_tag="ACHFOB_000244"
     CDS             32654..33727
                     /locus_tag="ACHFOB_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HFN5799080.1"
                     /translation="MNFINLQAQYLAYKDEINAEIESVLSSSSFIGGAKLNEFEQNLA
                     HFLGVKHAIGCSSGTSALYLALRALDIGKDDEVIVPSFTFIATAEVVALVGAKPVFVD
                     INLSNYNLDFEAVQKAITPKTKAVIAVSMFGQMSDLRALEEILKNKNITLIEDGAQSF
                     GASFKGEKSCSIAKISCTSFFPSKPLGAYGDGGAIFCHDDEIAKKIRILLNHGQTQRY
                     KHEFIGINGRLDTLQAAILNVKLKYLEKELDKRQKLAQTYNANLKNCQIPQIDPNAFS
                     AYAQYSVLVEDRASVLQKFEKANIPYAIHYPTPLHKQPCFSEFSNLELKNSEYASEHI
                     LSLPFSPFLSEEEQEQVICIFKD"
     gene            33732..34598
                     /locus_tag="ACHFOB_000245"
     CDS             33732..34598
                     /locus_tag="ACHFOB_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HFN5799081.1"
                     /translation="MKIGIIGLGKMGQNHLNELSKNSHFKLNALFDLCKNPNLNIFDD
                     IFYDDLDKFLNRNNDIIIIATPTNSHLAIAKKVFKQCKCVLIEKPLALNLKEIDEISN
                     LAKEYSVKVGVGFCERFNPAVLALKKELENEEIISINIQRFSLYPQRISDVGILQDLA
                     VHDLDLLCFLSKQEITKTNLLKKYTQDQTRESESIILCELEKCIASIHQSWNSTQKLR
                     KIHLITKNHFYEANLNDFSLLKDGNFIELTQQSPLFSEHEALLKLIDNQPNHLASTSD
                     AYKVQEILERFA"
     gene            34595..>35521
                     /gene="hemH"
                     /locus_tag="ACHFOB_000246"
     CDS             34595..>35521
                     /gene="hemH"
                     /locus_tag="ACHFOB_000246"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004325 - ferrochelatase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HFN5799082.1"
                     /translation="MKLVLFLNMGGATNLQDCEVFLKNMFNDPYILGIKNRFLRKFVA
                     WIITKARVKAMQENYKKMGGKSPLNELTQSLCNKLNLKQDEFKFDFVNLYVPPFATEI
                     LQKYTLNESDEIILFPLYPHHSCTTVTSSLEVLQNEISKQKIQAKVKTIDIFYKNELY
                     NEMIVSHILDKKSKFDAKILIFSAHSLPQSIIDKGDLYEKHVNDHVEILKEKLKDHFD
                     EFILAYQSKLGPVKWLEPNTSDVLANLNDKALIYPISFCIDCSETIFELGMEYKHLAK
                     CDYDLISCPNDSDEFMEFILNSINSPLARKTSC"
BASE COUNT        12164 a         6189 c         4853 g        12315 t
ORIGIN      
        1 taaaataatt aaaatttaaa ttttatttgc aatgtgtaaa attttagaag ttaaattccg
       61 catgatgcgg aatttattat gaatgtggtt ttgcttgagt ggcgtatttt acacccagat
      121 caaaagcttt agcatttgca tcacgagttt ttgcaggaac catatgaagc atagtgtctt
      181 ttaaaacatc taaatctata catttactca tataagcagc aattgcaagt gctacaactg
      241 attgagtagc cacatttcct acctcatctt tagctatggt aataatagga atttcaaaaa
      301 tttgccattt tttataatct tcactttcag gatgtactaa atttggctct acaactatga
      361 tacctccttc ttttacaccc ccacgaaaac ctttataacc cttatctgca gtcgaaagca
      421 taaaatctac ttccccttct acagcataag gaaataaaat ttctttatca tcgatgataa
      481 tatccacctt agtagggcca ccacgcactt gtgaagtgta agtagaagcc ttaaaagctt
      541 gacgaccttc tttaatggct gcttctgcta aaatttctcc tgcggtgata acaccttgtc
      601 cgccttcacc gccaaatctt aattgatatt tcattttaaa gctcctaaat ccaccattct
      661 tttttctttg gctgcacgac gtacttcttc ataagcgtgg cagtattctg gctgagaatt
      721 atcttcatgt aaaattcctg ttggaaattt atcttttctt tcttcaaaat ccatgctttc
      781 aaatttagac ttatccacaa cacgattttt aatccaatca agcatagcca ctgcttcacc
      841 cattttattt tttctaccta ggttaatatg acaatttgag aaaacatcaa caaagctata
      901 acctttgtgt gctaaagctt tataaattaa attttctaat ttatttgcct caataacatt
      961 tcctcttgcc acgaaagaag ctccagcggc tttagttaat tcgcaagcat caaaatttgg
     1021 atcgatattt ccaaattgtg cagttactgt ataaaaacct tttggagtag ttggagaagt
     1081 ttgagaatta gtaagcccat aaataaaatt gttgattaca atatgagtta aatctatatt
     1141 tctacgacat ccatgtatag tatgatttcc accaattgct aaagtatcac catcgccact
     1201 tactacaata acatgtttgc taggattggc tagttttatg cctgttgcat aagcaatagc
     1261 tctaccatga gtagtgtgca cggtattgca atttacataa gagctcattc taccgctaca
     1321 tcctatacct gaaacaagac aaacatcatc catattccaa cccagctttt ctatcgcgcg
     1381 gataatacat tttaaaacta caccatcgcc acaaccccaa caccattgag taggaagttt
     1441 atcagttctt aaatattcat cataattaaa cgccatttta tatattctcc tttactttag
     1501 caatgatttc gctaggtgtt ataggacgac catttgcacg atgtaagcta ataaaatcac
     1561 gacgagaact tactctttca atctcctcaa gatactgtcc catatttaat tcgcttacca
     1621 ttaccttttt aaatttgttt accacttcag caattttctt ttcagctaca ggataaagtg
     1681 tgataggacg gaaaagtcct accttaatac cctcttctct gagcctattg atagcttctt
     1741 tagcagaacg acttacgctt ccgtaagcta tgattaaaaa ttcagcatca tcaagcatat
     1801 attcttcata agtacaaata tcatcttggt tgtttttaat tttacctata agtctttcca
     1861 tgtttttctt aactatagcg ccatcttctg ttggaaaacc tatatctcca tgatgaagtc
     1921 cggttacatg atagcgatag ccagtaaaaa atggattgag tgttgcaggt tcattttcgc
     1981 ccgctgcata aggtttataa tcttttttat cgcctgtgaa ttttttacga ttaataattt
     2041 ctatatcttt taaatcaggc aataccgctt taccattcat atgccctaca gtttcatcca
     2101 taagtaaaaa tacaggagtc atatactttt cagccaaatt aaacgctctt atggtttctg
     2161 tataagcttc ttctaaactc gctggtgcga tagccacact agcaaaatcc ccatgagtag
     2221 gtgcttttgc ttgaaataaa tccccttgag ccacccttgt tggaagacct gtcgaaggac
     2281 cacctctcat aacatttaca atcacaagtg gaatttcagc aataaatgca agtcctattt
     2341 gctctgcttt taaagaaatt cctggaccgc tacttgcagt catggatttt actccactca
     2401 ttgccgcacc aatagccacg ctaatacctg aaatttcatc ttccatttgt ataaaagttc
     2461 catcatttgc aggaagcata tggcttaatt catgagctat ctcactacta ggagtaatag
     2521 gataacctcc aaaaaattta catccacaat caatcgcagc tttggcgatt aaaacattac
     2581 ctgttgctat aacttctctc attatttttc ctatgctaat tttttgtatt tgttattttt
     2641 tacggctaca gctctatctt tagcctcagc agtaagtttg gcaaatttaa attcatctct
     2701 ttttgccacc ataatagcaa aatcagggca atgtgtctca cactcggtac agcctataca
     2761 ggattcaggg tgtacaacct ctatcatttg tcctaaaacc gcatgcacat catcgcgcat
     2821 agctaaaacc ccagcggggc aatagctaac acaaatattg catgctttac atctatgctc
     2881 atctacccaa acaggggtat cttttggagc tgtcatactc atgttttttc ctttattaac
     2941 ctaatatttt ttgaatttct tcaccaatta aagccggaga atccaccaca tgaattccat
     3001 agctttttaa agcttctttt ttagctgcag cgctttcatc agcacttcct actatggcac
     3061 ctgcatgccc cattcttttg cctttaggag cagttgcacc tgcaatgaat gctaccacag
     3121 gtttgctaat attttcttta ataaatttag ccgcttccac ttccaaacta ccaccaattt
     3181 cacctatcat tacaatagct ttagtttcat catctttttg gaattcactt aaaagttctt
     3241 tataagcaag acctatgata ggatcaccac caattcctac tgcagtagaa attccataac
     3301 caccttgaac tacctgatta gcagcttcat aagttaaagt tccacttttt gaaataagcc
     3361 ccacgcaacc ttttttaaaa ataaaacctg gcataatacc taatttgcat tcttcagaag
     3421 tgataatacc tggacaattt ggtccaatga ttttcatacc ctttttattg gcatattgct
     3481 tagcaaacat catatctttt acaggcgtat gttctgtgat tacaactgca agcttaatac
     3541 ccgcatcagc tgcttcaatc acgctatcac ccacagcaaa agcagggaca aagatcaagc
     3601 tcacatcagc ctttgttgct ttaaccgcat ctgcaacggt atcaaaaact ggtttaccta
     3661 aatgagtttg tccaccttta tgaggggtga cacctccaac tatatttgta ccataagcca
     3721 tgcattgctc agcgtgaaaa gttgcttctt tacccgtaaa accttgaact attacttttg
     3781 tatttttatt aaccaatata ctcattttct atccttatcc tactaaactt tttacaagct
     3841 ctgcaccgtt tttaagattg gttgctgctt tgatattttt aagatttgaa ttatctaaaa
     3901 ttgtctttgc ttctgctgca ttagtgccat caagacgcac tacgatagga atgttcacct
     3961 caacattttt agttgcctcc aaaataccat ttgcgattct atcacaacga acaataccac
     4021 caaaaatatt gataaatatt actttaacat ttttatctct taaaatgatt tcaaaagctt
     4081 ttgcaactgt ttcagcagat gcgccaccgc ccacatctaa gaagtttgca ggttttgcac
     4141 cactataatt gataatatcc attgttgcca tagcaagtcc tgcaccattt accatacaag
     4201 caacatcacc gtctaatttt acataactta aaccaaattc agctgcttct ctttcagcag
     4261 gattttcttc tgtgatatct ctaagttcgg caatctctgg atggcgataa agtgcactgt
     4321 catcaaaact acattttgca tcaagagcgt aaaaatctcc ttctgcagtt ttaattaaag
     4381 gattgatttc aagcatattc atatctttat ccatataaag cttataaagt tttgctatca
     4441 tagaaataag ttttttgctt tcatctttat ctaatcctaa aacctttgcc acttcaagac
     4501 catgaaacat tttaaagcca atttgtggat caatgcctac ttttgcgatt ttttcagggc
     4561 tttctttagc cactttttct atatccatcc ccccttcgct tgaagcaatg attgtaattt
     4621 gttctgccat tctgttaaat aaaatagcca aataatattc ttttactata tttgcaccac
     4681 tttctatata aagtttttgc acgagcttac cttcaggtcc tgtttgatga gttactaaat
     4741 tcattcctaa aattttactt gcataatctt ttacctcatc taaattttta gcgattttaa
     4801 caccaccgcc aagaccacga ccacctgcat ggatttgagc tttcacagcc caaacgctac
     4861 cgcctaattc tttagcatta gccacagctt catctacgct aaatgcaact tttcccttta
     4921 aggtagggat gctattgtct gcaaaaattg cttttgcttg atactcatgt atgttcattt
     4981 attctccttt atattgatat ttgattaaag atttttctaa tttgtctttt tcttgcaaac
     5041 taagatccat tttcatgatt tcaatcacac cttcaagtcc taatcttgcc ataactccta
     5101 aggctttgtt ttgcactcca aattccccat gtaaaatcac actcataggt aaaaactcgc
     5161 cacttcttat ggactcaagc attcttatac aagcactagc aggggctaaa taagctgaag
     5221 ttttaagatg tttgattact ttagctccac ctgtttttac ttcattttct aaatcatcaa
     5281 attcttcttc atttaaaaat tcgcttatat ttttattttt aacacttgcg taagatttta
     5341 ccaaaaccat atcatcatta tgaaaaccaa taagtcttgt atccacactt gacattttga
     5401 cattaagttt tttggcaagc tcatacttaa atcttgcatt gtctaaaact cccgccatgg
     5461 ctataatttt ctttgatgaa aaaatcccgc tttcataaag agtattaagt agaaaatcca
     5521 caggattagt taaaataata aaaagcggat cttctgtaaa atctttaatt tttttagcac
     5581 aatcaagcat aatgcttgta ttcaactgaa gcaattcttc tctactttgc ccatcttttc
     5641 tagcaaaacc tgcactaaaa agcactatat ctgaattttt ggtatgagta taatctttag
     5701 cgcaaagtaa atctatattt aaatttaaag cagctatgct ttgagtaagt tctagttctt
     5761 ttgcataaag caaatcctca ttgatatcta ctaaaacaat ttcatttgct atttctctta
     5821 aaatcaaagc ataagctacg cttgagccca cattgccagc ccctataaca gtgattttca
     5881 tctttgtcct attttttcta aaatagcgtt aaaagttgca cttggacgca tgattttatt
     5941 tgctttttca tcatcaaatt tataataccc acccaaatcc actttcacac cttgtgcatt
     6001 gttaaattcg gctctgattt tttcttcatt agaagaaagc tctagggcaa tatctttaaa
     6061 aaagctttga agctccatat cacttgcctg tcttgctaaa tgatttgcaa aatacattgc
     6121 taagtaaaaa tgacttgttc tattgtcatc ttctttaact tttcttgatg gagctttatt
     6181 attttcaagc cattcgccta tagcctcatc aagacattct gctaaaacct tagctttatg
     6241 attactgcac ttatttgcat aaaattccaa acttgcttgc aaagccaaaa attcacccaa
     6301 actatcccaa cgcagatgat tttcttcgac taattgttct acttgtttag gtgctgaacc
     6361 ccctgctcct gtttcaaaca tagctccacc ctttaacata ggcacaacag aaagcatttt
     6421 tgcacttgtt ccaagctcta aaataggaaa aagatcggtt aaataatccc ttaaaacatt
     6481 acccgtgata gaaataacat ctttaccttc tcggattaac tctaaacttc ttaaacaagc
     6541 ttcttttgga gttaaaatgg ctatattttt acccttttct tttaaacgat tttgtaccaa
     6601 agttatcatg attttattac tagctctttt gctatctaac caaaaaatag cttcggctcc
     6661 actaagttct gatctttcta tacctaaatc aatccaattt aacaccgcat caaatttagc
     6721 ctgattagct ctataaatat caccttttct aaccttatgt tctaataaaa ctttaccgtt
     6781 agaaactatt ttaaaagttc cttcttcttt agccacaaag gttttatcgt gcgagccata
     6841 ttcttgagcc tttttagcca ttaaacctac attagataca ctgccaagtt ttgaaggatt
     6901 taaagtgcca tttttatgta aatcttcaat aaccgcctca taaatagtcg cgtaagtttg
     6961 atcaggaatt acggcatttg tgtccttttc cttaccttcc ttatcccaca atcttgcgcc
     7021 atttttaagc attgcaggca tagaagcatc cacaataaca tcgcttggaa catgaagatt
     7081 tgtaatgcct ttatcggaat ttaccataga aatatcagca gatttagcta aaatttcatt
     7141 gtattttttt agaatttcat cttttttgct tgaattttcg atcttactta aaagctcact
     7201 taaaccatta tttggattaa tgcctaattt ttcaaattca tcttgaaact cgataaataa
     7261 ttctttaaaa aatactttta ccgcataacc aaaaagtata ggatcactta ctttcatcat
     7321 tgtagctttt aaatgcaaag aaaaaagcac atcatcatct ttgcttgctt taatttcttt
     7381 tgcataaaat tcctgaagtt tttgcacatc cataaaagta gcgtctaaaa tttcattttt
     7441 ttcaagtttt aagccctctt ttaaaatttc atttttacca tcaacgcttg taaattctat
     7501 attagccaca caatcttgat cgattaaaac cgctttttca ttagagaaaa aatccccttc
     7561 tttcatgtaa gaaacacgag tttttgagtt tggattaaac tcaaccacac gataaggatt
     7621 gttttttgca tagtctttta ccgcttttgt tgaacgacga tctgaatttc cttgtcttaa
     7681 tacaggatta accgctgaac ctaaaacttt ttgatatttt gttttaattt gcaattcttc
     7741 atcatttttt ggctcatctg ggtaatttgg taacatataa cccttatctt gcaattcttt
     7801 aatcgccgcc ttaagctgag gaatagaagc tgaaatattt ggggttttaa taagatttgc
     7861 atccgatctt ttgacaagct cgcctaaaag ctctaaagca tcttcacatc tttgctcctc
     7921 ttttaaatac tcactaaaag tagctaaaat ccttccagat aaagaaatat ccgaggtttt
     7981 tactcctata tgtgccctac ttaaaaaagc tttcactata ggcaaaaacg aataagtcgc
     8041 aagagctggg gactcatctg ttaaggtata agtaatttgc atttttagtc ctttaaaata
     8101 cttattttta ttttcatttt taagtatatt acaaataaaa aaaaatgcaa gagtaagttt
     8161 aaagtttgtt ttagttttca aacaaacttt aaatattttt aattaagtaa attagcagga
     8221 agttgtatga tatttttaat aagattaaaa ggggttttta gagtatctgt taaaatttcg
     8281 gtatgaaatt tagggtcatc tatacttcca tctattttta agtttgtgct aatttcttga
     8341 tttttaccta aaattacata atttaaaatt ggaaccttgg atatagcttc tgaagctgat
     8401 tttaaagttt taagctctaa actaaaatcc actgtattta atcttaaatt tgctgatcct
     8461 aaaccatata tatctacact atcgccgttt aaattaatag ccaaaacact taaaagatct
     8521 ttttttctat taaaaataat ctttccatca tgtaggctta aacctttttg attaaaagtt
     8581 ggagatttaa acatcaataa acttggtaca gtatcgataa aggaaataag ctgatttata
     8641 cctcttaaat ccttcacata agtattttta aaatcgatct gtccatcaaa atactccaat
     8701 ccacttcctt ttatacttaa gttaaacact ccatcttgaa cagcttgttt ttgtaaaaac
     8761 tcatttaaat aattatcatc aatattgcta acgtttaaat ttaaatcatt agaagaataa
     8821 taaagatcaa attttgcatt tcctctagaa cctttaagat ccaaagcatt accttttaaa
     8881 tcagcctcta ccctatcaaa agccaaagtt ttattagaat ctggcaaaat taaagctaca
     8941 tttgctccac caaaactaat attttgggta ttagtagaaa tatcaaatgt tgaatttgaa
     9001 gagttggaat cttttttata aatataactt aaatttttca aatgaatttc tttattatca
     9061 gaacttattt tagcacttgc cgtatcactt tgagtatgaa tttccataat gcccttattt
     9121 tttacaatat caaagctatc attttcataa ggagtttgac cgttgataag taaattattt
     9181 ttaaaataag catcattaac gcttgcatta aaatcttcaa aatttaaagt tttataataa
     9241 acatttttag catcaataaa cccaaacttt ttaagtaatg gagaaaatga aaataaaatc
     9301 ttaggattat taagattagc ctcaagtcca tctttaaaat ttaaaatcaa attccactga
     9361 ggaatgctaa tgttaacatt ttgcgaataa tctaatttta cttctgcatt ttgatttttt
     9421 aaatctaaaa gctccccatt gtcaaaataa agccttgaaa tctgagtatt gaaatttcct
     9481 tgttgttttt gcaagtcaaa tttagcatta aaatcagcct ctaaaaagcc atttttaaca
     9541 ctagcatttt ctatatttaa atcattttga tttaatttta caaatgcttt tgtaatatta
     9601 aaatcagcca aagaaatact agcattctct aaagctaaaa taccactata agaaatttca
     9661 cccttatcat gaaaatcaat tttaagctct aaatcacttt taatttttcc gcttttttga
     9721 taaaaaggta atgaaaaatg ataatcctct aaagctttag caagtttttc gtcaaatttt
     9781 agattatcag acttaatgcg caaataaatc ccagcttttt tttcatcaaa caaatcatat
     9841 agataaacct tactagaact taaatcagca ccattataga aagctttatt aaagacaaaa
     9901 tcaagctttt gtttgtttaa atttaaatcg agttttggaa tttcaatagc attcatttta
     9961 tcatccaaac gaactttgac attattaaca taacctgatg cgctaatatt gtctaaataa
    10021 taattatctt tagtaaaatc tataaagccc tgcaaataat ctaaatgata aaattctccc
    10081 ttagccctat atgctaccca aagatttaaa ctctgcggaa gttctattct tttattaact
    10141 cttttaaaaa tttccgtaat atttctaatg tttaaatctt ctattttata agctaaattt
    10201 ttatctttgt aagaaatact tgcgttaaag tcaaataatt ctccacttgc tctaccttga
    10261 aaataataaa actcgctctt agtattgata cttaaatttc catcaatatt taaatcataa
    10321 tcttttaata aaagtttttt aatatcagct ataagttctt tattttgacg ctgcaatgtt
    10381 aattttaaaa ataacaaatc attatctata aaaaattcat tatctttaaa taaaatacgc
    10441 acatgattat cttttatatt taaattttgt atatcaatct cttcaacaaa agtatataga
    10501 tattttaaat tttttgttat ttttaaaatc tctgttgaag cattatcaga agagtgagtt
    10561 tgtgatgaaa tttcggaatt ttgagtctca tttatagtga tattttttgc tcgtacaatt
    10621 aattttttat ctaatttaat atataattgt tccaatttta aaaaatcaaa ttggatacta
    10681 gagatgacaa tcccattttt aagcactata aacaaagcta atataagcac aacaaaaaat
    10741 acaacaatat ataaaatttt ctttttcata cgcaacttct ttttgatatt tattttgggg
    10801 attttttatt atctaactca gcctttaaaa agcaattctg tggtatttat tccccaaggt
    10861 tcaatttctc aaattataac atatttaaag caaaataaat atcagatgag tagtattgat
    10921 aaatatattt tatttttttt aggacaccct caatcaggct ggatcaacat aggtacaaaa
    10981 gatttaaata gggctgaatt tctacataaa ctcactattg ctaaagcagc acttcaaacc
    11041 attactctta tcccaggaga aacaagcgta atctttttag aacaagcagc caaacaactt
    11101 gaacttgata aagatatgct tttaaaagaa tttcaagctc aagctcctta tgatgaagga
    11161 gtttttttac cagaaactta taaaatccca aaaggcatta cagaaaatct actcattcaa
    11221 atgcttttaa accatgctga aatttccaat aaaaaaactt ctgagaaaat ttttggtgat
    11281 tataatccaa aaaaatggca ccaatatatc atcatcgctt ctgtaataca aaaagaagct
    11341 gctaatgaca atgaaatgcc tatagttgca agcgtaatct ataatcgact taaaaaaggt
    11401 atgaagcttc aaatggatgg aactttaaat tatggaattt actcccatgt aaaagttacc
    11461 ccacaaagaa taagacaaga taatagctct tataatacct ataaatttac aggattgcct
    11521 aaagaagcgg tttgtaatgt ttctttagct gctattcgtg cagctatttt tcctttaaag
    11581 acagattatt tatattttgt gcgtgataaa aacactggag ttcatatttt tagcacaaat
    11641 atagatgatc acaataaagc cataaattta caaaaaggaa aataattttg atatttttgt
    11701 acaaaatagt taaattggaa cagtatttgc ttgttaatat taaaaattat aaaaaggata
    11761 aaaaatgatt aacccattta aatcaaaaga actggtcact ggtgctttag cgggtagaaa
    11821 tctaagaaat caactcatca atgccaatct tgcaaatgtt gatactcctt tttataaagc
    11881 aagagatatt gaatttgaaa cagctttggt aaatcgtgca aatgaaattt tcaaaaaaaa
    11941 tgataataaa gaattgcaat tagccgtaac tgaagaaggg catcaaaaac cttggaaatt
    12001 ccctgatcct agtaaatcta ctatttactt aagagatggt catttagcaa gaaatgatgc
    12061 aaatactgtt gatctagatg tagaaaccac agaaatgagt aaaaatacag ttatgataac
    12121 agctcttgat ggagttttaa gaagacaaag caatatcttt agttctatac ttgatgcaag
    12181 ctctaaatta agttaaaggt aaattatggc atacttaagt gattttgata ttagtggtta
    12241 tggtttaagt gctcaacgtt ttagaatgaa tgttattagc tctaatatag ctaatgcaaa
    12301 tactacaaga acagctgaag gtgggcctta tagaagacgc gaagtgatct ttaaagcaac
    12361 agattttgat aagcttttaa atgagcaaat taacaaagat aataattttt taaaatatga
    12421 aaatccttta aatgatccaa gttcgccaga agaagctaaa cctcctattc aaagtgttgt
    12481 agtggataaa gtggtcagag atgacaaaga ttttcgtatg aagtatgatc caagccatcc
    12541 tgatgcaaat gctgaaggtt atgtagcgta tccaaatgta aaccctgtca ttgaaatggc
    12601 agatttgatt gaagctacaa gagcttatca agccaatgta agcgctttta caagtgcaaa
    12661 aactatagct caaagtgcga ttgatttatt aagaggataa taaaaaatga acaatattaa
    12721 tgatttaaga ttaaataata atatttcaaa taccaacaaa agtcaaaatt ccacaggaat
    12781 tggtgatgaa tttgccaaga tgcttaaaaa tgaaatcgat gatttaaata aagcacaaga
    12841 aagtggagaa gctgcaatga cagacattgc cacaggacaa gtaaaagatt tacatcaagc
    12901 agctatagct atcactaaag ctgaaagcag tatgaaattt atgctagaag taagaaataa
    12961 agcgatcagt gcttataaag aaatcacaag aactcaaatt taaaccctaa tgcaagaata
    13021 taaaaaaaat agggtttcaa aagttgcctt tgcctactgc atggcacttt tgtttatgat
    13081 tatttttatc agctctactt tttttcttac atcaaaacgt catataccta acactgaaaa
    13141 agatcaatac gctcttgctc taagaggatc gattataact aaagataatt ttactatcac
    13201 aagttctaaa caaatttatc gtgctgaaat tgatcttaga agtattaaca aagataaatt
    13261 tgatctattt ttaaagcttt ttcaaattta tagtgggata agtaacgatc aagtagcaga
    13321 tattaaaaaa agaatgcaaa atcaaaaaaa acgctcttat aattttgttc ttttgcaaaa
    13381 cttagattcc aagcaagcaa gctatcttaa agaccttgct aaaaaacttt atatacaagg
    13441 ttttttcaaa gcttttacaa acaactctgg aagagttgaa acaagaggat taaatatcat
    13501 cgaacatgaa gaagatagaa tttacatgtc aaaagattct tttactccta ttatcggtta
    13561 taccaaaatg atattagatc cagaaagtgg aattttaaaa aatataggag ttaaaggttt
    13621 agaaaaatac tacgatgaat gtctaagtcc tgttcaaaat gaaaaaattc aaggacttaa
    13681 agatataggt ggaaatatta ttttaaatct aaattcacta caacaaaaaa agatcaatgg
    13741 ttgtgattta tatttaaatc tttctttaaa actgcaaaaa agtatagaga aagctataga
    13801 tcaaagaaat gaggatttaa aagccaatga aatcatcgtt ggggtaatgg aaagcaaaac
    13861 aggaagaatt ttagctctag caagctcaag gcgttatgac ccacaaaatc gcggaaagga
    13921 tctatcagtt cttaatgcaa gcgctataga atacggctat gaagcaggtt ctgttatcaa
    13981 accttttatc tttacaacag ccttaagact tggtaaaata aaaatggatg aagtgattaa
    14041 tacttatggc ggttcttaca agctaggacg tttcaccatc aaagacgatc acaaaatgga
    14101 caaaatgact atggaggaag ttataagata ttcttcaaat ataggcatga tacaaattgc
    14161 taaaagactt aacaatatag aaatcgtatc aggacttaaa atatttaaat ttggcgaaaa
    14221 aagtggtatt gatctaccct atgaacaaaa aggagaaatt ccaaatccta agcgcttaag
    14281 agatatagaa aaatctgttt taagttatgg ttatggactt aaaacaacct ttatgcaact
    14341 ccttgcagct tataatgttt tcaacaatga tgggttttat atcacaccac gtttagctga
    14401 aaaattctat caaaatggac gctttacaaa tcttgatgat gatgtaaaaa aagaaaaaat
    14461 tctttctagc gaagccgcta aaacgatgca aaatgttctt ataaatgtta tagaaaaagg
    14521 aacaggaaaa aaggcaatta cacaaggtat tattgcagga ggtaaaacag gaacggcaag
    14581 aatagccgaa agacaaggtt acacctcaaa tcgctacaat gcttcctttt ttggttttgc
    14641 aaatgattta aatcacgcct ataccatagg agttctcgta agacatccta ctaaacctta
    14701 tagttattat gctgcacaaa gtgctttgcc tatgtttaaa gatgttgttg atattttaat
    14761 caatgaagaa tttctaacgc ctatacaaga caataaccaa actagcacaa acaactagtt
    14821 tgatatatct ttagaaaata tcacctcaac agcacctata agttcttcgg caatcttagc
    14881 agcaaaagtt gtatcattaa gtattgaaat tccttcagct gttgtgattt ttcttactga
    14941 aataagatgt tcaacattgc tcaaggttaa agtatcgatt tcttttaaaa tttcttttcc
    15001 tttttgaaga tttttaataa tcaaataaag cttttcacga tcttcaacaa ctctaagctc
    15061 ttcgatactt cttaaaagct ctcctagatt cgatctaatt ttattatact ctaaagccaa
    15121 aaattcatta gaagaactag aatatttctt aatatttgct tggataattt ttaaattttt
    15181 agttgtttcg gctaaatttt tagctgccat cttaaaggta aaaattttat gattctttgt
    15241 ttcatcgtta atataaactt gtgctttagt tgaaaaatcg ataatagctt caaaaagaac
    15301 ctttatccta gtttgataca aatagtccaa atccacattt ttactaaacc actttttatt
    15361 ttctaaaatt tctttaaaac ttttatcact ttgtatatct ttacgactaa aacctatagc
    15421 atgagcaaca attgcatagg tattgttata aagatgctcg ctttctttcc ttaaagattc
    15481 gatggctgtg tcactaaact taaccaaact actatcaaga tataaaggct tgtctttatt
    15541 cttatcttta ggagctttta ctatcttatt taaaaaaaga acaatttgag gagtaaagaa
    15601 tgaaaaaagc acaacaccaa ttaaattaaa caaagtgtga aataatgcta ctttcaaagc
    15661 tatatcttct atgtttaata caatggataa aaaattaaga aaatgtataa aataaggaaa
    15721 aataagcact attaaaaaag ctataccaaa attaaaaata caatttgcaa acgctaattt
    15781 ctttccttca atattggtac ttaaagaagc taaaacagcc gttacaactc ctccaacact
    15841 agtacctaaa gttgctgcta aggaattttc caaactgatt tgtcctgcaa gtaaagcagc
    15901 gacaataata gccattgtag ctgtgcttga ttgtataact cctgtaagca aagcacctaa
    15961 tcctaaaaaa acaaaaactc ctttaaaccc agcaaaatca aaacgagaaa gatcaattat
    16021 atgtttaaaa ttttcaaaac cacttttaat ataatccaca cccaaaaaga aaaatcctat
    16081 accaataaaa atattaccta aaccttttaa aacactatct ttttgaaaga aaaataatac
    16141 tccaataatc aaaagtggga tagctagcat tgaaatttta atatttgtca aaccaacaat
    16201 cagccaagaa cttgccgtat ttcctaaatt tgctccaaaa ataatcccta tgcccgcacc
    16261 caaagaaata agccctgcgc tcaaaaaaga aatcgtaata atagaaacta aagttgaaga
    16321 ttgcataatt aaagtactta aagtaccaaa aagtatactt tttatctttg tatcggttga
    16381 cttcgctaaa attttttcaa gcaaaccacc actaaaagct ttaaaaccta tacctaaatt
    16441 agtcattcca ataagaagta ttgccactcc tgctaaaaga ttggcaagct cgtcataacg
    16501 aattaaaata aaaatcagaa ctaaagtaaa aatactccat gaaataaatt taaaatattt
    16561 taaagaattt ctttcctctt gcaatgccta accttttagt ttttcaaatt cattcatcag
    16621 aaattctctt aaaatttcgg cttcttcttc gcctttttct agatactcaa gcaataaatt
    16681 ttctaattcc tttaaaaaag aaaaaagttc attttgccag atactatcgt ttttattgct
    16741 caaattcatg gtttgtatga aagttaattc cctgcttaaa tccccaagtt tttctaaaaa
    16801 ttcatctttt tgatcagaaa tttttaatgc taaattagca ttttggacat tttctttaaa
    16861 ttctctgatt ttttcatcga ttaaatcaca aaatttcgga taaatatcca ttttaatagg
    16921 ctctaaaagg gttcgctcat ctatatttaa agtaagcttt ttaacagcaa aataaagagc
    16981 taaaaaagac aaagctgcta tgagtaaata aattcctagc attaataacc cttaagggct
    17041 agcattccgc catctaaatt gatgctttca agtcccaatt tttcggctat aaactcagct
    17101 gcaaccatgc ttctatggcc actacgacaa ataaaagcaa gttttttatt ttcatctctt
    17161 ttgctttgaa attcatctaa aaatttagca tttaaaagcc cttgattatc atataaagcc
    17221 acacattgtg cattaggtaa aacaccttct tcccattcta aaggagtacg cacatcaaag
    17281 atttgatatg cgtttaaatc ttgctttgtc caaagacttg cagggatatt ttctatcatg
    17341 aaaaagcctt attgatgatt tttgtaaggc ttgcattaaa ttcagcagga ttgtccacgc
    17401 ccataccttc gcttagtttt gccatattta aaactagggt tgctatatct gcactaaagc
    17461 tttcgttgtt tttaagacct gtaaaaatag cgtgttttgg attgatttct aaaataggtt
    17521 tgaaattttg ctcttgaccc atttgtttta agagttgttg catagcaaaa tcaggtttat
    17581 ttttatcata aactatacaa cttgggctat ctttcaaacg actggttagt cttacatctt
    17641 caacttgatc ttttagaagt tctttaaatt tagctacaag tggagcaaag gtattttttt
    17701 cttcatcact tagttcattt ttatcttcta cttgattgat agctacaaat ttcaaacctt
    17761 caaattctag cataggagtt accaaagaat caatctcatc atccatgagt aaaacttcta
    17821 tatttttttg tttatactct tcaagcaaag gagaggttct taataaactt tcattatttc
    17881 ctgctatata aaaaatttcc ttttgttcgc cttgaaggtc atttttatac tcctctaaag
    17941 agcgtaaatt ttcaccttta gtgcttttat aaagcatgag ttttaaaaga ctatcttttt
    18001 ctccgccaaa accataaagt ccttctttta ataccttgcc aaaggtttta aagaaagata
    18061 agtatttttc tttatcattg tttttaagtt tttcaagttc acctaaaatc tttttaacgc
    18121 tagcttcttt aacacctttt aaaatttgat tttcttgtaa aatttcacgg cttacattaa
    18181 gtggtaaatc ttctacatcg ataatccccc gcacaaaacg caaataagtt ggtaaaagtt
    18241 ctttatcgtc atcgctgata aatacgcgtt ttacataaag ttttaagcca ctttgataat
    18301 ccacacggaa taaatcaaaa ggtgcatttt gtggtatgaa aaataaagaa ttgtattcta
    18361 attttccttc acttttagtg tgaagataaa gtaaaggttt gtttgaatca tgaaaatttt
    18421 gctcataaaa tctttcataa tcttctgctt taaggcttga tttttgcatt ctccataaag
    18481 cattggcttt attgatttga gaaattttaa gttcagtttt cccttcttct tcgccttctt
    18541 tagcaggagt aaattcttct ttttccatga aaattggaaa ttgaatgtga ttagagtatt
    18601 tttctataat gctttcgatt ttataagcat tagcaaactc atcatctttt aaatataaag
    18661 taatgcttgt tccttgttct tctttgtttg cgtcatcaat ctcataacca tttgcatcag
    18721 aactccaaag ataagcttta tcatctaaag cttttttact taaaacttcg attttactag
    18781 ccaccataaa agcagaataa aaacctactc caaattgtcc tatgagttga gaatcttttt
    18841 tagcatcacc gcttaaattt tctaaaaagc ttttagtacc gctttttgct atggttccaa
    18901 ggttgttgat aagatcatct ttatccatac ctatgccatt atcactaata cttaaagttt
    18961 ttttatcttt gtcaattttg atttcaattt taggttcgaa ttttaagctt ttatatttat
    19021 catcacttac gcttaaaaaa ttaagcttgt ctaaagcatc gcttgcgttt gaaataagtt
    19081 ctcttaaaaa aatttcttta ttagaatata aagagtgtat cataagctgt aaaagctgat
    19141 taacttcagt ttgaaattgc attttgattc ctttgtaatt ttttaaagtg gtattttagc
    19201 aaaaaataca aattctaaag taaatttaaa gatttatttg aaaattaaaa agccaagcca
    19261 tgcggcaaat aagcaaagaa agacatttaa gataatattt aacgcaaaat gaagataatt
    19321 tccactttgc aaaagaagta aattttgata agaaaaagta gaaaaagttg taaaagctcc
    19381 taaaaaacct gtacttataa agcttttaag taaaggagat aaacctttat tttgtgcata
    19441 agaaaacaaa agtcctatga taaaagaacc caaaacattt acaaaaagag ttccaaagct
    19501 gatagaataa ggaaaaaatt tattcactaa atttatagaa agcattctta atattgctcc
    19561 tataaatccc ccaaaaccaa ctactaaaag agtgtttaac aaagcttagc tctttcttga
    19621 tcgagtaatt cttgcatttt ttttctggtg ttttcaagcc atttttcatc atttgtatcg
    19681 actaaatcca tacaaatgat tttaagtact ccgctgcttg cactaaaact ttttgtgtct
    19741 aaaatttttg cagaatccac aattaaaatg ggttgaactt taagatttaa tttttcactt
    19801 aaaatttttg ctccactttg aaatttaagc attttttcat ttttagatct agttccttct
    19861 ggaaaaatag ctaaaaccct atcttcacta attctttctt ttgcttcttt taaaactcgc
    19921 accaaatcac gcggattttt tctatctata caaagaagtt ttggtttttt catagcaact
    19981 ttgaaaatag gaatttctcc taattctttt ttggcaatcc agcataaatt tttaggatat
    20041 aattcttcta aagcgatgat atctaaagca ctttgatgat tcattaaaat catctgagct
    20101 tgtggattaa aagtaccaat gatttcttgt ttataagaga tagtatatct ttgaaattta
    20161 gcccaaattt tgcgaatttt ccaaagtgtg ttttgagatt ttgtaaagca aaaacaaaaa
    20221 atcaccaaag caacacttaa aacaaaaaaa atccaaaaat aaagagcttt aatttttttg
    20281 taaatcatct ttattaaccc aacctatttt tccatcagaa aacaatactt taatataatt
    20341 ttgtcttttg cccaaaactt ctactttttc atctgcattt gccgtataaa aataagttga
    20401 aggctctgta ggtaaaattt tagccctaga accagccttg ataattgcat tttgagtatt
    20461 ggtatctaca agaaaactaa gtgcaaaaca aacaactgcc aaagccagaa taatgtaatt
    20521 ttttctccat acaaataaaa ctccaaataa aaccgctaaa aaccacaaag catattgttt
    20581 ataaatattt aagtctttat ttacaggatt taaatcactc tgagtactaa tctcatcgtc
    20641 actaattttt aattttaaat ttatattttc aagcttttta ctgtccttat tgaaatacga
    20701 aaattcaaaa tttgttttac ttaatggcaa aatagcataa taaaaagcgc tagaagcatt
    20761 aaaatcccct tttaaatttt caataccttg cttttgaatt ccttctataa aaaagctttt
    20821 aagatttgta ttggttgcgt ttagttctac catcataatg atattagcat catcaaaata
    20881 actcgcttta acttttttaa tttccaaaga acttgccaca aggtgtgaaa aatctttatt
    20941 gaataaagta ttttcaaatt tgataggatt aagattgata tcagcctctt gaaaagcttc
    21001 attatttcta agaagtttga tagaaatttt actcaaacta gcatttgaat ttttggcttc
    21061 aaaccataaa gttgttttat attcattgtt gataaattcc cattttgcat ctggattcaa
    21121 aaaagataag ttagtttttt ctacgcttat gttgaaatca aattttgtat tttccgtagt
    21181 gcgagcatag atcgtaatag gaaaaacttc tccaacatat accttacttg gatattcatc
    21241 atttgtaaga accaaactcc ctttggctac aaaaggatcg tctacattgc tttcaaagtc
    21301 attgttttca tcacttggcg gaatattttg ataaattttt tgttcttctt ggggtaattt
    21361 ttgtaattct ttttgcatat tttcatcttg gccactaaat acagaaattt cacctctgcc
    21421 aaacaataca acaacactaa aaattaaagt taataaaatt ttcaaaataa aaaaccttta
    21481 agcattttta aacctacatc attgcctaga attttttcac aagcacgctc aggatgtggc
    21541 ataagtccaa agattttttt gttttcatca caaattcctg cgatatcaaa tacagaacca
    21601 tttggatttg gctcgtattt taaagtaata agatctttat cttgcaattc ttttaaagta
    21661 gtctcatcag cgtaataatt tccctctcca tgggcaattg gtaaactaat aatttcatct
    21721 tttttgaaat ttttcaaaaa ggcattatca ttagaaacca ctcttaaact ttggtttttt
    21781 gagataaagc taagattgtt gttatgcttc attgcacctt ttaaaagacc actttcaagt
    21841 aaaatttgaa aaccattaca aatacctaag atatatcctc ctttttttgc atgattaaaa
    21901 acaccttgca tagcaggagc aagttttgca atagctgcgc atcttagata atctccataa
    21961 gaaaatcctc ctggtaaaac aactaaatct gcatcaaatt ctttttcttc atgccaaaca
    22021 atctgcgttt ttactccaag tttttcaaag gcataagctg tatcaatttc acaatttgtc
    22081 cccggaaatc taataatagc aactttcatt ttactctttc tcaattacaa gctcataatc
    22141 ttcaatgacg ctatttacca acaactcttc acacattttt tttacttgtt ctttggctaa
    22201 tttttcatct ttctcatcaa gagaaatttt gatttgtttt gctattttta cttctttaac
    22261 actattaaaa tttaaagaat gtaaagcttt ttccaccgct ttaccttgtg gatctaaaac
    22321 cccatttttt aaagaaatat ttacaataac ttccatattt ttccttaatt taatattctt
    22381 tttaaaactt cttcataagc catttttaca ttacctagat cttgacgaaa tctatcttta
    22441 tctaattttt cattgctaaa tttatcccaa aatctacaac tatcagggct tatttcatca
    22501 gctaaaacaa gctcattatc tttagttaaa cccagttcga ttttaaagtc aatcagcctt
    22561 aaatttttat tatcaaaaaa tggagttaaa atagagttaa tctttctagc catattttta
    22621 atttcactaa tttgagcttc attttgcact aaatttaaaa tcaaacaatg ctcatcattg
    22681 ataaaaggat cgcctaaggc atcatcttta agacaaaatt ccaccaaagc aaaaggtagc
    22741 acagtgccat ctttaatgcc cagtcttttt gtaagagaac ctgttgcaac attgcgtact
    22801 ataacttcaa taggaacaat tttacatttt ttaaccactt gttctgtatc gcttatagtt
    22861 tctaccaaat gagttttaat cccatttttt tcgagcaaat gaaaaatttc agtactgatt
    22921 ttacagttta atgcgccttt tccactttca ttgcctcttt tttctgcatt aaaagcagtt
    22981 aaatcatctt taaactcact aattagtaaa ttttcatcat cagttttgaa aagtttttta
    23041 ccttttcctt cgtagagcat ttcttttttt gtcattttat tgtccttgtt tgatatttaa
    23101 aattttaata gtatcaatag ccgattttaa ctgtgcgtca tcattgattt gtttttgact
    23161 gattagattt ttattgtctt tattttcttg tttatcttct tttttatttt tatctatttt
    23221 ttcaagctca ctttctaaat gttgttttaa gtcgctttct tttatagaaa aaccatcttc
    23281 ttgagtattt actttacctg gaaaaacttc aatatcaggt tttacaccca ctgcttgaat
    23341 agtacgtccg cttggaagat aatatcttgc gatagtaagc cttaaagctt cagttttatt
    23401 aataggtatg atttgttgaa cactaccttt tccaaaagta ttctcaccca caataacacc
    23461 gcgtttaaga tcttgtaaag ctccacttac gatttcactt gcactagcac ttccaccatt
    23521 tacaagcaca gccaaagaaa catcagaaat tttgttttta ggatcggctt tatattcttg
    23581 attttcactt gtgatgcgtc ctttttgaga aacaataaca cctttatcta caaataaatt
    23641 tacaagtcct atagcttgat ttaaaagtcc accaggatta tttctaagat ctaaaataac
    23701 ccctctaaca ttaggatatt ttttaagttc tttacttgcc acatctacaa catttttatc
    23761 aaaatttgta actctaagat aaagaatgtt ttcattttct atcatttttg cataaacact
    23821 ttctatctta ataatttctc ttgtaagtgt aacatcaaaa ggttttgttg caccttttct
    23881 aaagatggtt aaagtgattt gagtttttgg cttaccacgc attttatcta cagcatcatt
    23941 gagattaatt cccaaagtgg cctcatcatt aatttttaaa ataatatctc ctgattttat
    24001 ccctgcttta tctgctggtg ttccttctat aggagaaaca actgttaaag cgccatcttt
    24061 catacctacg gttataccaa ggccaccaaa ttcgccattg gtttgaattt tcatatcatt
    24121 aaaatctttt tcatttaaaa aagaagaatg cgcatcaaga ttgcttaaaa gccctgataa
    24181 agatttatcc accaaatcgc tgatattttg atcatccaca tagtattgct ctattatagc
    24241 aagagttttt gtaagcttat ctaaagcttc taggcgtttt tgaacctgct cttctttttg
    24301 atcaacttta gcttgtaaat gacttgttaa aaatagacat aaaatgaaag tagtggcaaa
    24361 gcctgcaaga cccgcaaaaa atcgttttgt tttcaaaata agctccatca ttgagtttta
    24421 gtttaaagag taaattttaa taaaaattgc ttaaaaattc gtaaataaat ttaaattctt
    24481 aaaaatatgt taaaatagac taaaaatttc aaaaagaaag ttaatacaat gtgccaagaa
    24541 aaacatactc atacacattc tcaaaaacat cttaaagcag tttgcaatcg tctaagtaga
    24601 accataggac atttaagcgc tattaaaaga atggttgaaa atgacaaaga ctgtagtgaa
    24661 attttaatcc agcttgctgc cgtaaaagcc gaagttaaca atactgcaaa agtagtttta
    24721 aaagaacatt tagctcattg tatggtacat gctatagaag aaaatgatat tcaaagtata
    24781 gaagaattaa acaaggctat agatatgttt atgaaataat ctaaaattag tcatttgtcc
    24841 tattatttaa aaaattttac tcaattaact tgacattata tgactaaagt tatataatgt
    24901 caagtatata aactaaataa aggataaaac atggcaaata tacaagattt tttaactgat
    24961 aatatgcttt caaaccttga aagtgcagca tctttagcta tacattctaa aaatactgaa
    25021 gtcgtacctt tgcacctttt atgggcttta agcgtagata gtacaagtat tttaaatcaa
    25081 attttaaata aattaaatat ttctaaagaa gccttagaac ttgaaattaa aagcagaatt
    25141 tcaaaacttg caacgagttc aaatgtaaac cgtgaaaata tacgcttttc caatgaactt
    25201 ataaattcat tagaaaatgc taaaggatta atgagtgcta atggagatag ttatttaagt
    25261 gtggatactt ggcttataag tgaaagtcaa aaaagtccta ttaaagaaat tttggcgcaa
    25321 tttttagatt taagagaatt tcaaaaagag cttgaaagtc taagagcggg acgaaaaatg
    25381 gatagcaaaa caagcgatga aactttagat agcttaaata aatttggtat agatttaacc
    25441 ttaaaggcaa gcgagggtaa acttgatcct gttataggca gagaagaaga aatcgaacgt
    25501 ttgatgcaaa ttttaatacg caaaaccaaa aacaacccta tacttttagg tgaaccaggc
    25561 gtaggaaaaa cagctatagt agaagcttta gcacaaagaa ttattaaaaa agatgttcca
    25621 aaatctttgc aaaataaaaa agtcatcgct cttgatatga gtgctttaat tgcaggtgca
    25681 aaatacagag gagaatttga agatagatta aaagctgtgg ttaatgaagt gataaaaagt
    25741 gaaaatatca ttctttttat cgatgaaatt cacactatag taggagctgg agcgactgaa
    25801 ggcagcatgg atgcggcaaa tattttaaaa cctgctcttg caagaggtga actccatacc
    25861 ataggcgcaa ctactttaaa agaatatcgt aaatattttg aaaaagatgc agccttgcaa
    25921 cgccgttttc aacctgtaaa tgtaggtgag ccaagtgtta atgaggcttt ggctatgtta
    25981 aggggtataa aagaaaagct tgaaattcat cataatgtaa ccataaatga tagtgcttta
    26041 gtagccgcag ctaaactttc aaagcgttat ataacagatc gttttttacc tgataaggcc
    26101 attgatttaa tcgatgaagc tgcagctgaa ctgaaaatgc aaattgaaag cgaaccaagt
    26161 tctttaagaa aagtacgcaa agatatagaa actttagaag ttgaaaatga agctttaaaa
    26221 atggaaaatg atgaaaaaaa tcaaaaaaga ctcgatgaaa tcgcaaaaga actagctaat
    26281 ttaaaagaaa aacaaaatgc cctaaattca cagtttgaaa atgaaaaaag tgtttttgat
    26341 ggcataagtg ctaagaaaaa agaaattgat ctgcttaaaa atgaagcttc tttggctaaa
    26401 gctagaggtg aatttcaaaa agcagccgag ctagagtatg gaaaaattcc aagtcttgaa
    26461 aaagaagtag aaattttaga agataaatgg aaaaaaatga gtgaaaatgg agttttactt
    26521 aaaaatcaag tggatgagga tttggttgct ggaattttaa gcaaatggac gggtattagc
    26581 gtgcaaaaaa tgttaacttc tgaaaaacaa aaattcttag aagtggaaaa acatttaaaa
    26641 gaaagtgtca taggacaaga taaggcctta agtgctttag ctagagccat taaacgtaac
    26701 aaagcagggc ttaatgcgga caataaacct ataggaagct ttttattttt agggccaaca
    26761 ggggtaggaa aaacacaatc ggctaaagct ttggcaaaat ttttatttga tgatgaaaaa
    26821 gcaatgattc gctttgatat gagtgaattt atggaaaaac atagtgtttc aagactctta
    26881 ggtgcgcctc cgggatatat aggacatgaa gaaggtggag agcttactga agccgtacga
    26941 agaaaacctt atagcgtgct tttgtttgat gaagttgaaa aagcacataa agatgtattt
    27001 aatgtgcttt tagggatttt agatgatggt agagcaaccg atagcaaagg tgtaacagtg
    27061 gattttaaaa ataccattat cattttaact tctaatatcg cctcaagcgc cattatgaat
    27121 ttaagcggaa aagaacaaga agatgcggta aaaaatgagt taaaaaattt ctttaaacct
    27181 gagtttttaa accgtttaga tgatattatc acctttaatc cacttggaaa agatgaagct
    27241 tatgaaatag tcaagctttt atttaaagat ttacaaatga gcttagaaaa caagggaata
    27301 aaagcaagtt taagcgaaaa tgcagccctt ttaatcgcta aagatggttt tgaccctgat
    27361 tttggtgcta gacctttaag aagagctatt tatgatctta tagaagataa attaagcgat
    27421 atgatacttg ctgatgaact tcatgaaaat gatagcatta tcattgatgc aaaagatgat
    27481 gaaataatca tcaaaaaagc ttaatcattt tgaaagtaga tctttctact ttcaaaatat
    27541 aatctcgctt tcattaaatt tcatatttgc ttttggtaat ggtgatttgg tggtataata
    27601 agcactttct cctttataat ttccacgata aactccatta ggaatgctaa attttctagt
    27661 tgtatcaggg aatttttcta tatattgagt taaaaattct ctaaacacag gagcagctgt
    27721 tctagcccca ccttctgtat aacgcatagg cttgttgtta tcatttccat accaaatgat
    27781 tgcttctatt tcaggcgtaa gtccacaaaa ccaagcatca acacttttat tcgttgttcc
    27841 tgtttttcct gctatttcta tatcttttac tcttgcatta cgccctgtgc ctttttcaac
    27901 aacatttctc atcatatcta aaaccagaaa actttgcgct tcatcgctga ctttacgctc
    27961 atttgagtta aattccatga tggttttacc ggttttatcc tgaacttgtc tgataatttg
    28021 aggatcttta atcgtaccat agttcccaaa catggtataa aatttcgaat actccaaagg
    28081 agaaatacca aaacttccca atacgattga taaattaggt ggtatatctt taaatccaaa
    28141 ttccattagt ttagagtaaa gaacatcaag ccccatatca agtgcgagat taatggtagc
    28201 taaatttctt gatcttgtta aagcttcttt taaggtaatt aaacctaaaa atttaccccc
    28261 ttcattttta ggtttccaat cctcattatt acccgctcca ccttcaaaaa ttctagaaat
    28321 atcagcaatt tcactcatag gcgaatatcc taaattaatc gccacttgat acacaaaagg
    28381 tttaaaagag cttccaggtt gacgcatact ttgagtagcg cggttataat tacttttttc
    28441 ataatcaact ccacctacca aagctaaaac atcaccactt tgatgattta ccacgaccat
    28501 agctccgttt aaagtgctta aatttgcatc tttatcgcgt tttactatct catcataacc
    28561 aaattttaaa gcattctgtg ccatattttg aacatctaag tctatattta aaatgatttt
    28621 atatccacct gtttttaagt ctttgatatt agggcttaat tgtttaatca cttcatctac
    28681 gacataagga gcagcatttt gagtaagcgt atcatcataa acttgcggaa tttctttaat
    28741 ggctgtatca taatctgctt ttgaaatcca acctagatta tacattcttg aaataacatt
    28801 atttgctctt gaaatggaaa gatctaaatg ctttgtagga tcataactac taggtgcttt
    28861 tggcatacct actaacatag caatctcttt aaggcttaat tcatttaaat ttttatgaaa
    28921 ataccccaaa gctgcggttt ttactccata atacccatgt ccaaaaaaaa taaaatttaa
    28981 atacctttct aaaatttgct ctttagttaa aatggtttcc attttataag caagcaaagc
    29041 ttcgcgaatt ttacgcgtaa tagttctttc aggggttaat tccgtgtttt taataaattg
    29101 ctgggtaaga gtggaagctc cttccatggt ttttccaccg ctttttatga tttttacagc
    29161 agctctaaaa atggcatcga tattaactcc attatgttca aaaaagcttg tatcttctat
    29221 agcaaccaaa gcttctataa ggcgtggagg aagctcttca taaggagcgt aaaaacgatg
    29281 ttgttcaaaa atattagcca caagcttgcc atttctatcg taaatttgtg ttgtaagagg
    29341 aggtttgtat tctttaaaag tataaccctc agtatcagca cttgtgaaaa gataagccac
    29401 ataaataaat ccagctataa acaaaagagt aaaaaatgaa aaaatatatt ttaatatttt
    29461 cataaataag cctttaaagt ttggatatca agccctaaag cagtgcttag atttcctact
    29521 tgttgggtga tgaaattttg atgaaaaccc tcacacataa tacaacccgc cttgccttta
    29581 taaagatcat tttctacata atctcttaaa gcattttcat caaaattttt aaaataaagc
    29641 gtagtttttg aaagagaaaa aactcttttt tcaggtttta caagcaaaaa agccgataaa
    29701 atacttgcat acttgccatt ttgcaaggca agcatttcat aagcttcttt tttatccttt
    29761 gctttggtaa gaattttttc atctatacaa actatactat ctgcaaaaag caaattttgg
    29821 ttttgaaaat ctttgcctaa agtacttaaa aattgtcttt ctttttcaag aactattttt
    29881 tgaacatata aaaaaggtga aatattttta tttaaatttt catcataatc aaaactaact
    29941 tgcctaaaat caatctttgc ggttttaagc aagttagctc ttgaaatgga acttgaagca
    30001 agaattaaca ttaaagtgct ttttctatcg tttctaagct ttgttttaaa gcttcattga
    30061 ttttgcttaa atcttttcca cctgcagtag caaaatcatc tcttccgcca ccatttccac
    30121 ctaaaatttg cgccgcttct ttaaccaaag ctcctgcttt taaaggtgca tctttaacac
    30181 cagctgctaa agtgattttt tcatctttta cttgaataag taaaatcacc gctttagcaa
    30241 atttattttt aaaatcatca atcatagctt taatatcgcc attatctata cgttttacgc
    30301 aaatttcaac accttggata tttttagaat caagctcggt tttacttgaa tttttaagct
    30361 cattttttaa acttaaaatt tcatttttaa gctttttaac cccgtttaaa atatcattat
    30421 ttttaagctc atcttttact ttagaaagtt cttcaagttg attttttaca aattctaaag
    30481 ccgctttaga aaccacagct tcaatacgtc taactccagc actcacacca ctttctttaa
    30541 ctatgtaaaa acttcctatt tgagcagtat ttttaacatg ggttccccca caaagttctt
    30601 tgctttcacc tagagttaaa acacgcacat tgccttggta tttttcatta aacaatgcta
    30661 tagcaccgct ttttttagct tcttctaaag gcatattttc taagatagct tcgcttgagt
    30721 ttataatcat ttcattgact cttttttcaa tgctttctag ctcttctttg tttaaagctt
    30781 tatgatgagt aaaatcaaat cttagtttat tgctttcaac caaagatcct gcttgactta
    30841 catgagaacc taaaatttct cttaaagcat ggtgtaaaag atgagtggct gagtggtggc
    30901 gtgcgatttg ctctcttttt tctgtatcga ttcttgcatg aactatatcg ccaactttta
    30961 gttcttcgcc tgcttttaca aagctaagat tgagattaaa aaacttttgc gtatctaaaa
    31021 cttcacgctt agctataaat ccactatcag cactttgccc cccacttgtt gcataaaaag
    31081 gtgtgttttc aagcatcacc caacccgcat ctttaagggt ggaaacttct ttaaaatctt
    31141 catctaaaag ggctaaaatt ttactttcgc attctgcttt ttcataacct acgaaatgat
    31201 tttctccaaa tttttcaagc aagtttttaa aatctccgct tgcagtttta tctccacttc
    31261 ctttccaaga agccttagcg cgtgcttttt gctcattcat taaaagttca aatttttctt
    31321 catcaacttt aagatttttt tctcttagca tatcagccgt taaatcaagc ggaaaaccat
    31381 aagtatcata aagcttaaag gctacttctc cgctaaaaat ttctttagtg tttttaagct
    31441 cttcattaaa aatttcaatc ccattttcta tagtgcttaa aaatctttct tcttcaaggc
    31501 gaatttgttc ttttataaag tcttttttct cattaagata ggtataatgt ccacccatta
    31561 aatcgcatac aatatcaact agtttataca taaaagcttg tttaaaacct agcaaatatc
    31621 catgtcttaa agcacgacgc aaaatacgac gcaaaacata acctctacct tctttatcaa
    31681 aacttacccc ttgtgcaagc aaaaatacac ttgatcttat atgatcagct atgactctaa
    31741 aacttgctcc gctttcataa atataagttt tattacaaag ttttgaaatt tcattgatga
    31801 ttggcataaa aagcgagcta tcaaaattgc tgaatttacc ttctttaatc gctgttaccc
    31861 tttcaagtcc cattcccgta tcaatgcttg gctttggtag tgggctaagc actccatcag
    31921 cacttctttc gtattgcata aaaacaagat tccagatttc taaaaatcta tctccatctc
    31981 cacccatata atcttcgctt gagttaaaat gctcttctcc ttggtcataa aaaatctcac
    32041 tacaaggacc acaaggacca gtatcgccca tttgccagaa attatcttta tcgccaaatt
    32101 tgtaaattct ttctttttga atgtgttttt gccatagatt aaaagcttca tcatcgtttt
    32161 catgcacggt tacataaagt ctgtctttag gtagttttaa aacttcagtt acaaattccc
    32221 aagcataagc tatggcttgt tctttaaaat aatctccaaa actaaaattc ccaagcattt
    32281 caaaaaaagt atgatggcgt gcggtatatc ctacattatc taagtcattg tgctttccac
    32341 ccgctcttat acaagtttga cagcttgttt tgcgtggagg gtttgggcgt ggaatttctc
    32401 ctgtaaatat gcttttaaaa ggcaccatac ccgcattagc aaaaagtaaa gttgcatcat
    32461 caggaactaa aggacttgac ggggttatct catgtccttt tgatgcaaaa aaatccaaat
    32521 aagcttttct aatatccatg aattttccta aagaaatttt tataaaaaca tatcatacca
    32581 aaattacttt aaattaagta aaactaaaat acaataaaca tttttattta attttatttc
    32641 tctaaggttt tttatgaatt ttatcaatct tcaagcccaa tatctcgcat acaaagatga
    32701 aatcaatgct gaaattgaaa gcgttttatc aagctcttct tttataggcg gtgcaaagct
    32761 taacgaattt gagcaaaatt tagctcattt tttaggtgtt aaacacgcta taggttgttc
    32821 aagtggaacc agtgctttat atcttgcctt aagagcctta gatattggca aagatgatga
    32881 agttatagtg cctagtttta ctttcatagc aacagctgaa gttgtggcct tagtaggtgc
    32941 aaaacctgtt tttgtagata taaatttatc aaattacaat cttgattttg aagcagtgca
    33001 aaaagcaata accccaaaaa ccaaagccgt tatagcagta agcatgtttg gacaaatgag
    33061 tgatttaagg gctttagaag aaattttaaa aaataaaaat atcactttga tcgaagatgg
    33121 tgcacaaagt tttggtgcaa gtttcaaagg agaaaaatcc tgctccatag ctaaaatttc
    33181 atgtacgagc ttttttcctt caaaaccttt gggagcttat ggcgatggtg gggctatttt
    33241 ttgccatgat gatgaaattg ctaaaaaaat aagaatttta ctcaatcacg gacaaactca
    33301 gcgttataaa catgaattta taggtataaa tggacgcctt gacaccttac aagcagcgat
    33361 tttaaatgtt aagttaaaat acctagaaaa agaattagac aaaagacaaa aattagcaca
    33421 aacttataat gcaaatttaa aaaactgcca aattccacaa attgatccaa atgcttttag
    33481 cgcttatgca caatacagcg ttttagttga agatagagct agcgtattgc aaaaatttga
    33541 aaaagctaat ataccttatg ctatacacta tccaacccct ttgcataaac aaccttgctt
    33601 tagtgagttt tcaaatttag aacttaaaaa ttcagaatat gcaagcgaac acatcttatc
    33661 tttgcctttt tcaccttttt taagtgaaga agaacaagag caagttattt gtatttttaa
    33721 agattaattc catgaaaata ggtatcatag gccttggaaa aatggggcaa aaccacttaa
    33781 atgaacttag taaaaattct cattttaaac ttaatgcact ttttgatctt tgcaaaaatc
    33841 caaatctaaa tatttttgat gatatttttt atgatgattt ggataaattt ttaaatcgaa
    33901 ataatgatat tatcatcata gcaacaccta caaattcaca tttagcaata gcaaaaaaag
    33961 tttttaaaca atgcaaatgc gttttaatcg aaaagccttt agctctaaat ttaaaagaaa
    34021 tagacgaaat ttcaaattta gctaaagaat acagcgtaaa agtaggcgta ggtttttgtg
    34081 aaagatttaa tcctgcggtt ttagccctaa aaaaagagct tgaaaatgaa gaaattatca
    34141 gcattaacat acaaagattt tcactctacc cgcaaagaat cagcgatgta gggattttgc
    34201 aagatttggc tgtgcatgat cttgatttgc tttgtttttt aagcaaacaa gaaataacaa
    34261 aaaccaattt gcttaaaaaa tacacccaag atcaaacaag agaaagtgaa agcattattc
    34321 tatgtgagct tgaaaaatgt attgctagca tacatcaaag ttggaatagc acacaaaaac
    34381 taagaaaaat tcatcttatt actaaaaatc atttttatga agccaattta aatgactttt
    34441 ctttattaaa agatggaaat tttatagaac ttactcaaca aagtccactt ttttcagaac
    34501 acgaagcttt gttaaaactt atcgataatc aacccaatca tttagccagc acgagcgatg
    34561 cttacaaagt tcaagaaatt ttagaaaggt ttgcgtgaaa ttagttttat ttttaaatat
    34621 gggcggagct acgaatttac aagattgtga agttttttta aaaaatatgt ttaatgatcc
    34681 ttatatttta ggaatcaaaa atcgattttt aagaaaattt gtagcatgga tcataacaaa
    34741 ggctcgcgtt aaagccatgc aagaaaacta taaaaaaatg ggtggaaaat cccctttaaa
    34801 cgaacttact caaagcttgt gtaacaagct taatttaaaa caagatgaat ttaaatttga
    34861 ttttgtaaat ctttatgtgc ctccttttgc cacagaaatt ttgcaaaaat acactttaaa
    34921 tgaaagtgat gaaatcattc tttttccact ttatccgcac cattcttgca ccacagtaac
    34981 ttcatcttta gaagttctgc aaaatgaaat ttcaaagcaa aaaattcaag caaaagtaaa
    35041 aactatagat attttttaca aaaatgagct ttataatgag atgatagttt cgcacatttt
    35101 ggataaaaaa agtaaatttg atgccaaaat tttgattttt tcagcgcatt ctttgccaca
    35161 aagcattatt gacaaaggtg atttatatga aaagcatgta aatgatcatg tagaaatttt
    35221 aaaagaaaaa ctaaaagatc attttgatga atttatttta gcttatcagt ctaaactagg
    35281 ccctgtaaaa tggcttgaac caaatacaag cgatgttttg gcaaatttaa acgataaagc
    35341 tttgatttat cctatttctt tttgcattga ttgttctgaa acgatttttg aactaggtat
    35401 ggagtataaa catttagcaa aatgtgatta tgatttgata agttgcccta atgatagtga
    35461 tgaatttatg gaatttattt taaattctat aaattcaccc ttagcaagaa aaacttcttg
    35521 c
//
LOCUS       DAZBIH010000007        35370 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.007, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000007 DAZBIH010000000
VERSION     DAZBIH010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 35370)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 35370)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..35370
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.007"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            79..834
                     /gene="proB"
                     /locus_tag="ACHFOB_000247"
     CDS             79..834
                     /gene="proB"
                     /locus_tag="ACHFOB_000247"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004349 - glutamate 5-kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006561 - proline biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HFN5799083.1"
                     /translation="MKRIVVKVGSHVISEENTLSFERLKNLVAFLAKLMEKYEVILVT
                     SAAISAGHTKLDIDRKNLINKQVLAAIGQPFLISVYNELLAKFNKLGGQILLTGKDFD
                     SRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFFDADLLVI
                     LSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLL
                     EHNKKMFLASGFDLSVAKTFLLEDKQIGGTLFE"
     gene            908..1825
                     /gene="fmt"
                     /locus_tag="ACHFOB_000248"
     CDS             908..1825
                     /gene="fmt"
                     /locus_tag="ACHFOB_000248"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004479 - methionyl-tRNA formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0071951 - conversion of methionyl-tRNA to
                     N-formyl-methionyl-tRNA [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HFN5799084.1"
                     /translation="MKKIIFMGTPSYATCILKALVENENFKLVALFTQPDKAVGRKQI
                     LTPSDTKAFLSQNYPSIPIFTPSSLKDENIIREIKDLNPDFIVVAAYGKILPKAILDL
                     VPCVNLHASLLPKYRGASPIQSAILNKDEKSGVCTMLMEEGLDTGAILESLECDIKDK
                     NSSEVFELLANLAAKLILTTLLNFDKITPKKQEESLATLCRKIKKEDGLINLQNAREL
                     YQKYLAFTPWPGVFLENGLKFLELELVDELKQNARMGEILELEKESFLLACKQGVLRI
                     KKLQESGKKALDGRTYLNGKRLKSEDSLC"
     gene            1788..2441
                     /locus_tag="ACHFOB_000249"
     CDS             1788..2441
                     /locus_tag="ACHFOB_000249"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004077 - biotin-[acetyl-CoA-carboxylase]
                     ligase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HFN5799085.1"
                     /translation="MEKGLKVKIVCVESIDSTHLFLCEQIRNGKIDGNFAIYALEQTN
                     GVGSRENSWQSSKGNLHLSFCIKEEDLPKDLPLASVSIYFAYLLKELLQEKGSKIWLK
                     WPNDLYLDDKKAGGVISAKISNFIIGGMGLNLKFSPQNTALCDIEILLKDLVSEFLQK
                     VEKKILWKNIFSKYMLEFEKSRKFSVHHEGKVFSLENSFLYEDGSILLGDKRVYSLR"
     gene            2438..3223
                     /locus_tag="ACHFOB_000250"
     CDS             2438..3223
                     /locus_tag="ACHFOB_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004278029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5799086.1"
                     /translation="MSEIITIANQKGGVGKTTTAVNLAASLAVAEKKVLLIDVDPQAN
                     ATTGLGFNRNNYEYNIYHVFIGRKKLSDIILKTELPQLHLAPSNIGLVGIEQELAKGE
                     NNEKKMLLKNQIQEVIDEYDFIIIDSPPALGSITINAFAASDSVIIPIQCEFYALEGV
                     AMVLNTIKIIKKTINSKLRVRGFLPTMYSSQNNLSKDVVDDLKQNFKKQLFTINGNED
                     DFIVIPRNVKLAESPSFGKPIILYDIKSPGSVAYQNLAYSILG"
     gene            3229..4065
                     /locus_tag="ACHFOB_000251"
     CDS             3229..4065
                     /locus_tag="ACHFOB_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HFN5799087.1"
                     /translation="MGLNKDRGLSSLISDMDTVYSKELGFDKNQSTMIEIDQISPNPF
                     QPRKNFDQEALDELANSIKEFGLIQPIIVFKKNNKFILIAGERRLRAVKALGKKEILA
                     FIADIDENKLRELALIENIQRENLNPIELANSYKDLMQVHKITQENLAELIHKSRTQI
                     TNTLRLLNLDIRTQELIASGKISQGHAKVLVGLGQKDEKMLVDSIIGQKLNVRDTEKI
                     VKKIKNNESLPNQEFEDEIKKLKQILNRFGFDCKNKNNDFVIHLENIDKIKKLIKMLE
                     KL"
     gene            4126..4551
                     /locus_tag="ACHFOB_000252"
     CDS             4126..4551
                     /locus_tag="ACHFOB_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FoF1 ATP synthase subunit B'"
                     /protein_id="HFN5799088.1"
                     /translation="MFEDMHPSIMLATMAIFLAMIVILNSMLYKPLLKFMDERNDSIK
                     NDENKVKENSQEVLGVNDELEAIHINTREEIQKIKQSAIAAAKEEAEQILRSKKEELE
                     RKMASFYADLAVQKKELQEHLNIHLPELKQALQNNIKKI"
     gene            4562..5074
                     /locus_tag="ACHFOB_000253"
     CDS             4562..5074
                     /locus_tag="ACHFOB_000253"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HFN5799089.1"
                     /translation="MSKLFFIIFLLPLYAFGASNGSGEYDIIPRTINFLIFVAILYYF
                     VATPFKNFYKNRIVKISSKLDEIQKKLLESKAKKLDTMKKLEEAKASAAAALITAKKE
                     AEILVQNIKKETQDELDLLQKHFEEQKDYEFRKMEKELVSNTLNEIFSDPNMTLKQSE
                     IIELMMKKVS"
     gene            5077..5598
                     /locus_tag="ACHFOB_000254"
     CDS             5077..5598
                     /locus_tag="ACHFOB_000254"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HFN5799090.1"
                     /translation="MENIIARRYAKAIASRADINDFYQNLCILNSAFVLPKFKNIIES
                     NEIKKERKMEFLDSFFDIKNSSFQNFLRLLIENSRLECIPQIVKELERQKAFKENIFV
                     GIVYSKEKLSQENLKDLEVKLNKKFDANIKLNNKISQDDSVKIELEELGYELSFSMKA
                     LQNKLNEYILKII"
     gene            5612..7117
                     /gene="atpA"
                     /locus_tag="ACHFOB_000255"
     CDS             5612..7117
                     /gene="atpA"
                     /locus_tag="ACHFOB_000255"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HFN5799091.1"
                     /translation="MKFKADEISSIIKERIENFDLNLEIEETGKIISVADGVAKVYGL
                     KNIMAGEMVEFENGDKGMALNLEESSVGIVILGKGEGLKEGASVKRLKKLLKVPVGEA
                     LIGRVVNALGEPIDAKGVINANEYRFVEEKAKGIMARKSVHEPLHTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTTVAVDTIISQRGQGVICIYVAIGQKQSTVAQVVKRLEEHGAM
                     EYTIVVNAGASDPAALQYLAPYTGVTMGEFFRDNAKHALIVYDDLSKHAVAYREMSLI
                     LRRPPGREAYPGDVFYLHSRLLERASKLNDELGAGSLTALPIIETQAGDVSAYIPTNV
                     ISITDGQIFLETDLFNSGIRPAINVGLSVSRVGGAAQIKATKQVSGTLRLDLAQYREL
                     QAFAQFASDLDEASRKQLERGQRMVELLKQPPYSPLSVEKQVVLIFAGTKGFLDDIAV
                     SRIEEFEDGIYPFIEAKHPDIFEQIRSKKALDSDLEEKLAKAINEFKANHL"
     gene            7126..8010
                     /gene="atpG"
                     /locus_tag="ACHFOB_000256"
     CDS             7126..8010
                     /gene="atpG"
                     /locus_tag="ACHFOB_000256"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit gamma"
                     /protein_id="HFN5799092.1"
                     /translation="MSNLKEIKRKIKSVYNTQKTTNAMKLVSTAKLKKAEEAAKRSKI
                     YAQKIDEILSEISVQINKIVHNEDDVRLSLFHKKEQIKTVDLIFITADKGLCGGFNIK
                     TLKTVSEMLKEYEAKNINIRLRAIGKTGIEYFNFQKIELLEKYFHLSSSPDYEKACEV
                     IHAAVDDFLNGNTDEVILVHNGYKNMITQELKINHLIPVEPKSIEQTHNSLLELEPEG
                     TELLEDLIKTYFEYNMYYALIDSLAAEHSARMQAMDNATNNAKARVKQLNLAYNKARQ
                     ESITTELIEIISGVESMK"
     gene            8035..9432
                     /gene="atpD"
                     /locus_tag="ACHFOB_000257"
     CDS             8035..9432
                     /gene="atpD"
                     /locus_tag="ACHFOB_000257"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HFN5799093.1"
                     /translation="MQGFISQVLGPVVDVDFNDYLPQINEAIVVNFESEGKKHKLVLE
                     VAAHLGDNRVRTIAMDMTDGLVRGLKAEALGAPISVPVGEKVLGRIFNVTGDLIDEGE
                     EISFDKKWAIHRDPPAFEDQSTKSEIFETGIKVVDLLAPYAKGGKVGLFGGAGVGKTV
                     IIMELIHNVAFKHSGYSVFAGVGERTREGNDLYNEMKESNVLDKVALCYGQMNEPPGA
                     RNRIALTGLTMAEYFRDEMGLDVLMFIDNIFRFSQSGSEMSALLGRIPSAVGYQPTLA
                     SEMGKFQERITSTKKGSITSVQAVYVPADDLTDPAPATVFAHLDATTVLNRAIAEKGI
                     YPAVDPLDSTSRMLDPNIIGEEHYKVARGVQSVLQKYKDLQDIIAILGMDELSEEDKL
                     VVERARKIEKFLSQPFFVAEVFTGSPGKYISLEDTIAGFKGILEGKYDHLPENAFYMV
                     GNIDEAIAKADKLKG"
     gene            9436..9825
                     /gene="atpC"
                     /locus_tag="ACHFOB_000258"
     CDS             9436..9825
                     /gene="atpC"
                     /locus_tag="ACHFOB_000258"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045261 - proton-transporting ATP
                     synthase complex, catalytic core F(1) [Evidence IEA];
                     GO_component: GO:0045262 - plasma membrane
                     proton-transporting ATP synthase complex, catalytic core
                     F(1) [Evidence IEA];
                     GO_function: GO:0046933 - proton-transporting ATP synthase
                     activity, rotational mechanism [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase F1 subunit epsilon"
                     /protein_id="HFN5799094.1"
                     /translation="MNDLINFEIVTPLGVIYQGEVKSVTLPGSEGEFGVLKGHAALVS
                     SLKSGVIDIEKADLNHELIAIDAGHAKVDEDKICVLAKGAVWVCGSDESEIEKNLAQA
                     KDLIKSMSSDNAALAATFSKLDNARMH"
     gene            9825..10379
                     /locus_tag="ACHFOB_000259"
     CDS             9825..10379
                     /locus_tag="ACHFOB_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HFN5799095.1"
                     /translation="MNFEAIFHFFNNSSIITYIVLLWLSLYFILAFSILFARLTYLAT
                     WRNKEKESLETLLLGEKDLSRTDSILRKCNDTTSNHLEIYKNLASRRASAGLTWLSII
                     ASTSPFIGLFGTVISILETFGGLGTQNSLSIIAPKISEALVATGCGILVAIPAYTFHL
                     IIKRKAFELLSIIDSEIKVISSSK"
     gene            10388..10777
                     /locus_tag="ACHFOB_000260"
     CDS             10388..10777
                     /locus_tag="ACHFOB_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ExbD/TolR family protein"
                     /protein_id="HFN5799096.1"
                     /translation="MPFDDEKPELNITPLVDIMLVLLAILMVTAPSITYEEKINLPQG
                     SQKNTSAPTVKSLIISINAKKEIFLNQEKYDFISFADNLAQRKAQFNTEDPVFIRADK
                     SLKYDDVISVLRSVKNLGFNKVALQTE"
     gene            10780..11559
                     /locus_tag="ACHFOB_000261"
     CDS             10780..11559
                     /locus_tag="ACHFOB_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB C-terminal domain-containing protein"
                     /protein_id="HFN5799097.1"
                     /translation="MKNYGLSNLNSFLLALAIYISIVILVFFRLVSEVEPAIQYTDIK
                     DSFVDIELAEPSKQVITQSNTPKEIQKPTEQVDIEKLFAQTTNKTVKTEDIDQKASNF
                     NELFGNIKEIQEEKTTKIQSSAKSGASSAPKPQASELVKQLNDSLLQEESSTQGQSTK
                     AQKIGIYDEFLGKVVRIITQRWTQYYPNSEKISVKVKIFIDENGKFGYTSVEKSGNPL
                     YDAKVAEFLESQKGKFITYPPQNKNISITMNLRDEAKVKND"
     gene            11569..12777
                     /gene="tolB"
                     /locus_tag="ACHFOB_000262"
     CDS             11569..12777
                     /gene="tolB"
                     /locus_tag="ACHFOB_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Tol-Pal system protein TolB"
                     /protein_id="HFN5799098.1"
                     /translation="MKKIVAIFLVFLGSLWAEDPVIDVVNSGVVLPKIIVKDNSNLSD
                     ENLKKSFYNIIVNDLKVSSNFEVVANATETSNYTFEYALNKNGNTLSLNVKIKAGSSD
                     KSEQTYTLNGLEQYPFLAHKSVKASVNALGLASVDWMDHKILIARNSSSKKSQIIMAD
                     YTLTYQKVIVDGGLNLFPKWGNKEQTLFYYTAYDHDKPTLYRYDLNTNKASKILSSGG
                     MVVASDVSVDGSKLLVTMAPKDQPDVYLYDLNTKNLTQLTNYSGIDVNGNFIGSDDSK
                     VVFVSDRLGYPNIFMQDLNSNSAEQVVFHGRNNSAVSTYKDFLVYSSREPNQAGVFNI
                     YLMSINSDYIRQLTANGKNLFPRFSSDGGSIVFIKYLGVQSALGVIRVNANKTFYFPL
                     RVGKIQSIDW"
     gene            12854..13351
                     /gene="pal"
                     /locus_tag="ACHFOB_000263"
     CDS             12854..13351
                     /gene="pal"
                     /locus_tag="ACHFOB_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan-associated lipoprotein Pal"
                     /protein_id="HFN5799099.1"
                     /translation="MKKILFTSIAALAVVISGCSTKSTSVSGDSSVDSNRGSGGSDGW
                     DIDSKISQLNDTLNKVYFDFDKFNIRPDMQNVVSTNANIFNTEVSGVSITVEGNCDEW
                     GTDEYNQALGLKRAKAVKEALIAKGVNADRIAVKSYGETNPVCTEKTKACDAQNRRAE
                     FKLSR"
     gene            13355..14302
                     /locus_tag="ACHFOB_000264"
     CDS             13355..14302
                     /locus_tag="ACHFOB_000264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN5799100.1"
                     /translation="MKKIFTVALLGATLLYAESSAFGAGDITSNSSYGLTSNEKLFKE
                     KLDNLNNENIQTNARINEINERIEGLQSTLEGINSQYAKSNSRLSQVEENNQNIENNF
                     TSEIQKLKAYVEESRKIQEANNKQVKKVLAELSSLVDAINANYVSKNELNDANLSVKT
                     ITPSVVVSTTDSNSTIENNNTQNTQDDKAKQIDESWKKKKNNEILELAIKDVDKNAFE
                     DSKAKLNFLITKQYKPARANFWLGEIEYKQKNYNNAIVYYKKSSSLSTKGDYFPKLLY
                     HTAISLDKTGDTKTANGFYKALKTNYPNSPEAKASPNRK"
     gene            14317..14892
                     /locus_tag="ACHFOB_000265"
     CDS             14317..14892
                     /locus_tag="ACHFOB_000265"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN5799101.1"
                     /translation="MAIEKNSVVSMFYELKDANTNEVLESNLYSQPISFILGKGQILE
                     SLEEEVMKLDCPSNADVVIKKEKGLGEYDENAVQTLPKEQFAGIDLKVGMELFGEGEN
                     GETVRVTVKEIGENDVTIDYNHPYAGRDLLFSLNIVDARAASEDEILTGIIAGSHSCG
                     CGSGHGHDHHHGHGHGHGGGGCCGGGGCGCH"
     gene            14940..15812
                     /locus_tag="ACHFOB_000266"
     CDS             14940..15812
                     /locus_tag="ACHFOB_000266"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004314 - [acyl-carrier-protein]
                     S-malonyltransferase activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HFN5799102.1"
                     /translation="MGKDFYENSIKAKELLQNASDFCKIDFKHLLFEENEKLNQSEFT
                     QPAIVLNSLMAYSVLLEKKPDLSSKFALGHSLGEFSALAVNGAFDFLEALSLVNKRGL
                     FMQEDCAKVEAGMMVVLGLDDEKVEELCQKAQKENKQIFAANYNCDGQIVVAGLKPDL
                     ASYESVFKEAGAKRAMLLNMSVASHCPLLENASAKLCVELEKVLKPNFKAVLSNANAK
                     IYTCKEEALELLKAQLISPVLYKQSIKACENEVDYFIEFGASVLKGLNKKITSKETYA
                     LTNMNDIDEFLKVI"
     gene            15809..16498
                     /gene="pfs"
                     /locus_tag="ACHFOB_000267"
     CDS             15809..16498
                     /gene="pfs"
                     /locus_tag="ACHFOB_000267"
                     /EC_number="3.2.2.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxyfutalosine nucleosidase"
                     /protein_id="HFN5799103.1"
                     /translation="MMKIAILGAMSEEITPLLETLKDYTKIEHANNTYYFAKYKNHEL
                     VLAYSKIGKVNSTLSASVMIEKFGAQVLLFTGVAGAFNPELEIGDLLYATKLAQYDLD
                     ITAFGHPLGFVPGNEIFIKTDEKLNNLALEVAKELNIKLRAGIIATGDEFICDEAKKA
                     KIREIFNADACEMEGASVALVCDALKVPCFILRAMSDKAGEKAEFDFDEFVINSAKIS
                     ANFVLKMCEKL"
     gene            16495..17250
                     /locus_tag="ACHFOB_000268"
     CDS             16495..17250
                     /locus_tag="ACHFOB_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiocytidine(32) synthetase TtcA"
                     /protein_id="HFN5799104.1"
                     /translation="MINLSKKLIRQVAQANAKFGLIKDGDRVLLGLSGGKDSLALAHL
                     LNRMQAHAPFKFELEAVTLSYGMGEDYSHLHAHCEEHGIKHSVLDSNIYEVSGDTIRE
                     NSSFCSYFSRMRRGALYTYALEKGFNKLAIAHHLDDAAESFFMNFIHNGALRTLAPIY
                     QSKRGVTVIRPLIFVRERQLRDNATQNELSVIGNEFCPGMKLSEKNVKFPHAREEAKQ
                     LLANLEKNHPKLFTSLKTAFANLHTESFWLEKE"
     gene            17255..17776
                     /locus_tag="ACHFOB_000269"
     CDS             17255..17776
                     /locus_tag="ACHFOB_000269"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HFN5799105.1"
                     /translation="MKKAFVLVDYQNDFIDGSLGFDKALKIKENILKALNQIDFNNTH
                     LLLTYDTHDEHYLQSKEGLNLPVKHCIKESLGWQMPKEFEPFLQKAHKIFYKNTFGSL
                     ELANFIQKSDYEELHFAGLVSHICVFCNIILAFGAKPNARIILHQNLSASFDENLEKS
                     AFDILRAYGIEIV"
     gene            17776..18390
                     /gene="recO"
                     /locus_tag="ACHFOB_000270"
     CDS             17776..18390
                     /gene="recO"
                     /locus_tag="ACHFOB_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecO"
                     /protein_id="HFN5799106.1"
                     /translation="MQGFILHTQKVKDEDLIVYILSPKMLIKAYRFYGLRHSSILSGY
                     KIDFALEENPSFLPRLKDVLHLGFLWIMQRDKMLIWQEFIRLLYRHLKDVEELDSFYF
                     DLLQECVKRFEKQNPKRVIVDAYLKILEFEGRLHKDFFCFACDEKIQNSITLLRAFLP
                     SHSQCALGFEFEEKKLKQFYSSKNCAIFDDEEIENLYHLIKEGL"
     gene            18387..18791
                     /gene="ybeY"
                     /locus_tag="ACHFOB_000271"
     CDS             18387..18791
                     /gene="ybeY"
                     /locus_tag="ACHFOB_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002868756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HFN5799107.1"
                     /translation="MILSDEKCDFLESIASFLGPKDVELVFVDSKEMQEINLEQRKQD
                     KTTDVLSFPLENIDESLPLGSVVINVDLAKEKAKELGHSYEEEISLLFIHAMLHLLGF
                     DHENDNGEMREKEKELIEYFNLPKSLIVRTLG"
     gene            18882..20135
                     /locus_tag="ACHFOB_000272"
     CDS             18882..20135
                     /locus_tag="ACHFOB_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009881781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HFN5799108.1"
                     /translation="MSIFSINDNSNYGSILSQAKANKESKENSKISFANAFLKQNASK
                     LNEIQNANSQTLARSEVLNSTNTTNTSNNTNFSISSKTSSPNYDISSEFKNSIYTLKY
                     KQEDTSNIVSLAYGYGVDANGYMGSDFNKAAGLPEDFKIHKSTLDEIERFNQHNMASE
                     TSGNYYDSFDMASIVKSHYNSFNQVISAFPNDKTSFSEADLEQLPKGLNDGCNQNKEY
                     IVTHIFNAEQFHEAQAIKYSTMNLGMNLMKLDFSPQSMEQGPSNEGEFNPDMSVYPQN
                     EDGSYSKEALFMSFLKSYSPIPSPNQVVLSPEAKVREAKLELEMKANPSFSVSLDDIM
                     TGKVDFASLLKGYAQDGWLDAGIYAMEKGVAWQNTSIGYGGAWFDNQFNQAKANGWKA
                     SSESINSYVGSIMDRLNNLIGQTRV"
     gene            complement(20132..21049)
                     /locus_tag="ACHFOB_000273"
     CDS             complement(20132..21049)
                     /locus_tag="ACHFOB_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002785111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase"
                     /protein_id="HFN5799109.1"
                     /translation="MIDFSKKPLFLAPMAGFSDLPFRNVVKKFGADITISEMISSNAL
                     VYESSKTLHMLERAELENPYIVQIAGGDKEVLKKAVQMLNEMDFVDGIDFNCGCPVNK
                     VVKQCAGSALLENLELFKNLVGVIKENNKKSLTSVKFRLGFNEKYPEKMAKICESLGV
                     DFISIHGRTRKQLYSGKADYESIASAKASVSIPVIANGDINAQNAKEVYKITKCDGLM
                     IGRASVGNPWIFYEIKSGKSVDEKLKKEIILTHFDEMIKHYKDQGVSIFRKHLHEYSK
                     GHKDASAFRDEVNRINDAKIMQEKIESFF"
     gene            complement(21046..22032)
                     /locus_tag="ACHFOB_000274"
     CDS             complement(21046..22032)
                     /locus_tag="ACHFOB_000274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799110.1"
                     /translation="MKIKLFLLASFIYIALIFAFAWHLELGSYTLNISTYTFELPIMI
                     WLVIPLFIYMILAVLHIAFYGFLRYLKFKHFFKDAAKFEAYTQDLLLEKDLKTTFQTK
                     EFRAVAQLFKTIKTHEKIPHSNKINEILDLIDGLNKNEFFNLSKFKLENNNVLYLQNE
                     KNHLKNDANYAYNKLKNLNEIKDEFEEIAFNTLIEKASYEQIKNVKIPKKPSEVLTLI
                     KRFKEGNLELSVAEYEVLLSHNTLSEKDYLNAAKLSTKLLNPDAILGIFNKIKNEKSE
                     ALRAHLYLLAEFGLLDELREQIHNDDKKFNDFKAFLVLREKNIKIDLNQLIQ"
     gene            complement(22022..22384)
                     /gene="dksA"
                     /locus_tag="ACHFOB_000275"
     CDS             complement(22022..22384)
                     /gene="dksA"
                     /locus_tag="ACHFOB_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK suppressor DksA"
                     /protein_id="HFN5799111.1"
                     /translation="MKKNEIQNFKNILEERKKAILENLQSNSNEIEALHNSVPSDSVD
                     FSVIETGSQIDFAISTNLKEELIEIEDSLDKIKNGTYGICESCDDEIDSQRLKVKPHA
                     RYCITCRQIAEQGKKHEN"
     gene            complement(22396..22845)
                     /locus_tag="ACHFOB_000276"
     CDS             complement(22396..22845)
                     /locus_tag="ACHFOB_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HFN5799112.1"
                     /translation="MQVNIFCIQKSDEFKTWSEKYSKLISKYATLKEINVFNKKIALA
                     QNLNAIEAKKSYEEAFMPYKKGYCIALDEKGKDLTSIEFAKLIQDKNELSFFIGGAYG
                     LREEFNQSLDFRLSLSKLTLAHQFVKTLLLEQIYRAFCINNNHPYHK"
     gene            complement(22847..23689)
                     /gene="accD"
                     /locus_tag="ACHFOB_000277"
     CDS             complement(22847..23689)
                     /gene="accD"
                     /locus_tag="ACHFOB_000277"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase, carboxyltransferase
                     subunit beta"
                     /protein_id="HFN5799113.1"
                     /translation="MNFADIFSKIRRQQPSIKEAPNHWVKCQSCHALMYYKEIESCFN
                     VCPKCNYHMRISADERIKLLSDEGSFIEYDANLEAIDPLKFVDSKSYKKRLSEGESKT
                     GRKSSVISGECEINSLKTQLVVFDFSFMGGSLGSVEGEKIVRAIQRAITSKTPLVIVS
                     ASGGARMQESTYSLMQMSKTSAALKLLSKEKLPYISILTNPTMGGVSASFAWLGDLII
                     AEPEALVGFAGARVIKQTIGADLPEGFQKAEFLLEHGLIDAIVERGEQKQYLSDVLKF
                     FSGK"
     gene            complement(23698..24420)
                     /locus_tag="ACHFOB_000278"
     CDS             complement(23698..24420)
                     /locus_tag="ACHFOB_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HFN5799114.1"
                     /translation="MKEFLDACLNANLQIRKYLNNIPQNDLKLCSKLGYDKNQGYELD
                     LKCEQIFIKYLSCFGQIFSEESGLIGKASPKQMILDPLDGSSNFVSKIPFYGTSIALM
                     EKDQAKSAFVCNLVSQEIFAFNNNQAFKSNLSDPKYSPLTPNLFSKIGIVEKISLHPE
                     LLDFLTKNQLKFRSLGATALSLAYASYFSFVLILGKTRIFDTAAALAIHQNLYIEKNE
                     NFLLLSQDKKIFDIILEFLKNN"
     gene            complement(24420..26639)
                     /gene="bamA"
                     /locus_tag="ACHFOB_000279"
     CDS             complement(24420..26639)
                     /gene="bamA"
                     /locus_tag="ACHFOB_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_process: GO:0071709 - membrane assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane protein assembly factor BamA"
                     /protein_id="HFN5799115.1"
                     /translation="MKKHLISICALVAIANAATIKDIKFIGLNHLSNTSAINITGLKI
                     GEEINPAKINTAILNLYKQNYFENIAVENNNGILEIIVTEKPTIAKVTITGIASNDRK
                     QVESILGIKRGTLLDEGSIKEAIERIKAYYEAKSYFDTIVEYKKKTLENTDGLELEFI
                     VNRGENIIIDNVHLSGAKKFSYSDIEPAVVNKEKEFMGWMWGRNDGKLKVFELSNDSS
                     RIADEYMKKGYLDVQVSSPYLKTYTDTYQANLTYFIKEGKPYKIKSISIENPLFDDKQ
                     NAQTVKDLRSSAGKTINIEDIRKDVKTIETQSADLGYAFVEVYPDIQKNDQTQEATVV
                     FKVIPHDKVYIRNVIISGNSRTVDRVIRRELYITEGNLYNRTDLSESKNALKRTSYFD
                     DVNIKEEKVDDTHIDLIVDVKEASTGAISGGIGYGSSDGILLNASLSDTNIFGSGIKS
                     SVSVDKSDDTLSGRISLINPRVLDSQYSLGGTLYSNDYEWDNYSEKNYGFDITVGRQF
                     ARYYNVSLTYNLEQSDIYHLSPTLLRTGYELGKSIKSSITPAITFNNTDDYYLPRSGI
                     IASTSLEYAGLGGDQEFISSSSKFNFYQGLQDYIGYDLIYRYKASFYKVWDEGYLPIN
                     QRIYLGGIRSIRGFESRTVSPKNQWGDEVGGTIAFANSVELSFPLIDRIKLRGSVFFD
                     YGMIGRKNLDEIKRMSTGIGIEWITPIGPLQLVFAKPLNDKKGDDTNSFEFNLGTRF"
     gene            26716..27543
                     /locus_tag="ACHFOB_000280"
     CDS             26716..27543
                     /locus_tag="ACHFOB_000280"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004665 - prephenate dehydrogenase (NADP+)
                     activity [Evidence IEA];
                     GO_function: GO:0008977 - prephenate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_process: GO:0006571 - tyrosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HFN5799116.1"
                     /translation="MKIAIIGLGLMGGSLGLCLKENKLISCVYGMDLSKENEKDALRL
                     GLIHELIEFKDLALCDMIFVATPVNAIIEILQKLVDLPSNVTIIELGSTKRKIIESLP
                     KNLIKQTLFAHPMTGTENSGPKAAFKELYKDAVCVLCDSEIADDLHQKRAVEIFSHLG
                     MKIVFMDSKAHDHHAAIISHLPHVISFSLANFVMKEEDKRNIVHLAGGSFKGMSRIAK
                     SSPQMWESIFLQNKDNLLSSIDFFQQELERCKQMIQLDKNDELREWMKQANTLREIL"
     gene            27623..28996
                     /locus_tag="ACHFOB_000281"
     CDS             27623..28996
                     /locus_tag="ACHFOB_000281"
                     /EC_number="3.4.24.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HFN5799117.1"
                     /translation="MAKRKGKTYLSVLILVLIAILIFFISRLSIFEKNPPQILMPDVV
                     YTDLKKPILVHVKDDESSIKNVQIILHKDDNTSAMVIADEKISNLKDITLQVALPKFG
                     YKENVKSFVLEVIAKDSSFWNFFSGNEARKQIAVLVDNTAPKINIISNSYQIEQGGAG
                     AVVFKAEDANLDKVYIETNKGKIFKVTPYVKEGYYAALIAWDARDEEFRAFVIATDKA
                     GNISKERIRYYFVNRKYRVSNINLTDKFLDGKIENLANQYAPKDNNLNRYEKFKFVNE
                     TLRNSNEELIHEITSKVPEEKIDNFDLNLFLPLKNGMKVADFADHRYYSYNGQFVSDS
                     YHMGLDLASVAQAPIISNNAGKVVFAAENGIYGLNLIVYHGFGVYSLYGHCSSKNVDL
                     DEMINKQSIIGKTGTSGLALGDHLHFGVLVQGVETRPEQWQDKKWVENNIYNVLNDGK
                     KIILGKN"
     gene            28996..29880
                     /gene="lpxC"
                     /locus_tag="ACHFOB_000282"
     CDS             28996..29880
                     /gene="lpxC"
                     /locus_tag="ACHFOB_000282"
                     /EC_number="3.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008759 - UDP-3-O-[3-hydroxymyristoyl]
                     N-acetylglucosamine deacetylase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-3-O-acyl-N-acetylglucosamine deacetylase"
                     /protein_id="HFN5799118.1"
                     /translation="MKQLTLAKTVKGVGIGLHKGEPIEITLEPLEANSGIVFFRSDLN
                     ASYKASPENVINTQMATVLGDDRGFISTIEHLMSAINAYGIDNVRIVLNANEAPVMDG
                     SSISFCMMLDEAGVKELDAPKKIMVIKKPVEVRDGNKFVRLTPTKEPRINYTIKFDNA
                     VIGEQSYNFEFSKKNYIENIARARTFGFLKDVQALRSMNLALGGSLENTIVVDENRIL
                     NPEGLRFKDEFVRHKILDAIGDLTLLGYRVFGDYISYAGSHHLNHLLTKEVLKDKDAY
                     EIVSLEKTTQKAYEKVFA"
     gene            29919..30320
                     /locus_tag="ACHFOB_000283"
     CDS             29919..30320
                     /locus_tag="ACHFOB_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA threonylcarbamoyladenosine biosynthesis
                     protein TsaB"
                     /protein_id="HFN5799119.1"
                     /translation="MIGIYQDDKLIKTYKSEEKASEFLPKILDELLKEYDFTSLIYAN
                     GPGSYMGIKISYVGLSTLSIVKNIPLFAVSAFELNGYKPISANKNFCFVYKEGEICLE
                     QNIPAEFFLPKNLQELKLNNDNLPFYFLDAI"
     gene            30329..31207
                     /gene="thrB"
                     /locus_tag="ACHFOB_000284"
     CDS             30329..31207
                     /gene="thrB"
                     /locus_tag="ACHFOB_000284"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004413 - homoserine kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HFN5799120.1"
                     /translation="MKILVPATSANLGPGFDCLGLSLKLFNETQIQKSGVFSISIGGE
                     GSDNIFLKKNNIFVNIFYEIYEKLSGKKDNFRFIFQNNIPLSRGLGSSSAVIVGAIAS
                     AYYMSGFKVEKERILDEALIYENHPDNIAPATLGGFVCSLVEKNKVYSIKKEIDKDLA
                     AVVVIPNLAMSTEQSRQALAKNLSFNDAVFNLSHASFLTACFLEKKYEFLKFASQDKL
                     HEINRMKNLPELFEVQKFALENKALMSTLSGSGSSFFSLAFKDDALALAKKIQTKFKD
                     FRVQYLEFDDNGFEIC"
     gene            31232..31489
                     /locus_tag="ACHFOB_000285"
     CDS             31232..31489
                     /locus_tag="ACHFOB_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HFN5799121.1"
                     /translation="MKKHIPIRMCIVCKNRFEQNMLFRFKVVLGDIVPKAEHGRSGYL
                     CQNCIEREDKVLQKAFSKICKNLNTKITQQGLKEIFLNGKD"
     gene            31476..34091
                     /gene="infB"
                     /locus_tag="ACHFOB_000286"
     CDS             31476..34091
                     /gene="infB"
                     /locus_tag="ACHFOB_000286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HFN5799122.1"
                     /translation="MAKIRIHEIAKELGYDSKEIIEKANELGLGIKTASNAVEPEIAA
                     AIYEYIQTREIPEAFKKNIKTPTAKKPKKENIKEQEKLNESEKKEPKKEEKLKQEVKK
                     EELKIEKENAKEEEKQEIIDAHKPQSLASATLAKRRGLVIVKKKKDEEEIQVKKEEVK
                     NSNDISINNEERLSLKTMFSNADESLKKKKKEKKSFVASKKESTEKMNFLDEHDFGDI
                     SLDDEDEVVLPDFSVKEQEKPQNINKKQPNFIRQAVGNSAGFGLEGGIQRRSRKKPSK
                     KIEKKEVEEVGSVAISKEIRVYEFADKIGKSTSEVISKLFMLGMMTTKNDFLDEDAIE
                     ILAAEFGIEINIINEADEFDYVKDYEEETDEKDLVTRAPVITIMGHVDHGKTSLLDYI
                     RKSRVASGEAGGITQHVGAYMVEKNGRKITFIDTPGHEAFTAMRARGASITDIVIIVV
                     AADDGVKPQTKEAINHAKAAGVPIIIAINKMDKEAANPDMVKTQLAEMEIMPVEWGGS
                     YEFAGVSAKTGMGIEDLLEIVLLQADILELKANPKSFAKASIIESSVQKGRGAVATII
                     VQNGTLTVGSTVVAGEAYGKVRAMSDDQGKALKEIKPGECGVIVGLSEVADAGEILIA
                     VKTDKEAREYANKRHEYNRQKELSKSTKVSIDELGAKIKEGNLKALPVILKADVQGSL
                     EALKASLEKLRNDEIKVNIIHSGVGGITQSDIELASASENSIVLGFNIRPTGEVKERA
                     KDKGVEIKTYNVIYNLLDDVKALLGGMMSPIISEEQLGQAEIRQVINVPKIGQIAGCM
                     VTEGVINRGAKIRLIRDGVVVYEGNVSSLKRFKDDAKEVAKGYECGVGIEGCDDMRVG
                     DYIESYKEVEEQASL"
     gene            34088..34450
                     /gene="rbfA"
                     /locus_tag="ACHFOB_000287"
     CDS             34088..34450
                     /gene="rbfA"
                     /locus_tag="ACHFOB_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HFN5799123.1"
                     /translation="MNPSEIKKLRTESILKELIPEALANLDDENLKNLCVVDVECKKG
                     RYDAFVYLDKMFFNVHEQEKILSSLKKASRALQNYCMSEQGWYRCPNFHFKFDDRLEY
                     QNHMDALFEKIKKDKNES"
     gene            34440..34862
                     /gene="rimP"
                     /locus_tag="ACHFOB_000288"
     CDS             34440..34862
                     /gene="rimP"
                     /locus_tag="ACHFOB_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HFN5799124.1"
                     /translation="MNLEALCKEAELSFYDDELVSENGRKIYRIYVQKEGGVNLDDCA
                     RLSEILSPIFDVEPPVNGEYFLEVSSPGLERKLSKIEHFAKSIGELVKITTNEKEKFE
                     AKIIAVDDENITLENLENKEKTTINFNDIKKARTFVEW"
     gene            34909..>35370
                     /locus_tag="ACHFOB_000289"
     CDS             34909..>35370
                     /locus_tag="ACHFOB_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease"
                     /protein_id="HFN5799125.1"
                     /translation="MWNLDEKKLQEMLDGFLNFQEVWTLEKVKNMTLEEYTNIKKDNP
                     NRDDFTFWIESKLDNLGSIWGGSAFKFGIYRRNDESQKESSSGRLYSQNYAWIAKYGN
                     NENEAFNNIKEKIIQIIQASQDNNLKTIEKIDFGDAIKWKIAFHYQDVKNIK"
BASE COUNT        12748 a         4564 c         6357 g        11701 t
ORIGIN      
        1 acactcccta ttttttcaaa aataactagt ttatatgaaa ttttggctaa aattataaaa
       61 atttttcaag gaataagcat gaaaagaata gttgttaaag tgggttctca tgtgattagc
      121 gaagaaaaca ctttaagttt tgagcgtctt aaaaatttag tcgcattttt agctaaactc
      181 atggaaaaat atgaagtgat tttagtaact tcagcggcta tttcagcagg acacaccaaa
      241 ctagatatcg atagaaaaaa cctcattaat aaacaagttt tagccgctat tggacaacct
      301 tttttaatca gtgtttataa cgagctttta gccaaattta ataaactagg tggacaaatt
      361 ttacttacag gtaaggattt tgactctaga aaagctacca aacacgcaaa aaatgctatc
      421 gatatgatga taaatttagg aattttgcct attatcaatg aaaatgacgc tacagctata
      481 gaagaaattg tctttggtga taatgacagc ttaagtgctt atgctacgca tttttttgat
      541 gcggatttgc ttgtgatttt aagcgatatt gatgggtttt atgataaaaa tcctagtgaa
      601 tttagtgatg caaagcgttt agaaaaaatc actcatatta aagaagaatg gctacaagca
      661 accataaaaa caggtagtga gcacggaacg ggtggtatag taaccaaact taaggcagct
      721 aaatttttac ttgaacacaa taaaaaaatg tttttagcaa gtggctttga tttaagtgtg
      781 gcaaagacat ttttattaga agataaacaa ataggtggaa ctttgtttga gtgattaatt
      841 tattaaattc tcttttaaaa tcaaataagt tataattaaa acttttaatt tcacacaaag
      901 cgaaaaaatg aaaaaaatta tttttatggg tactccatct tatgcaactt gtattttaaa
      961 agcactagta gaaaatgaaa attttaaact cgtagcactt tttacccagc ctgataaagc
     1021 cgtaggtaga aagcaaattt taactccaag tgatactaag gcttttttaa gtcaaaatta
     1081 tcctagtatt cctattttta ctccaagttc tttaaaagat gaaaatatta taagagagat
     1141 taaggattta aatcctgatt ttattgtggt tgctgcctat ggaaaaattt tacctaaagc
     1201 cattttggat ttagtacctt gtgtgaattt gcacgcttct ttacttccaa aataccgtgg
     1261 tgccagtccg attcaaagtg cgattttaaa taaagatgaa aaaagtggag tttgcaccat
     1321 gctgatggaa gaagggcttg atacaggtgc tatacttgaa agcttagagt gtgatataaa
     1381 agataaaaat tcaagtgaag tttttgaact tttagcaaat ttggccgcta agctcatcct
     1441 caccactctt ttaaattttg ataaaattac ccctaaaaaa caagaggaaa gtctagcaac
     1501 gctttgtaga aaaatcaaaa aagaagatgg gcttataaat ttgcaaaatg caagagaact
     1561 ttatcaaaaa tatctagctt ttaccccttg gcctggagtt ttcttggaaa atggacttaa
     1621 attcttagaa cttgaacttg tggatgaatt aaaacaaaat gctaggatgg gtgaaatttt
     1681 agaattagaa aaagaaagtt ttttgcttgc ttgcaaacaa ggagttttgc gtattaaaaa
     1741 acttcaagaa agtggaaaaa aagctcttga tggtaggact tatttaaatg gaaaaaggct
     1801 taaaagtgaa gatagtttgt gttgaaagta tagactcaac tcatcttttt ttatgcgagc
     1861 aaatacgcaa tggaaagatt gatggaaatt ttgctattta tgctttagaa caaacaaatg
     1921 gagttggaag tagggaaaat tcttggcaaa gctctaaagg aaatttacat ctttcttttt
     1981 gtattaaaga agaagatttg ccaaaagatt tacctttggc ttctgtaagt atttattttg
     2041 cttatttact taaagaactt ttacaagaaa aaggttctaa aatttggctt aaatggccta
     2101 acgatctata tttagatgat aaaaaagctg gaggggttat aagtgctaaa atttcaaatt
     2161 ttatcatagg cggtatgggt ttaaatctga aattttcacc ccaaaataca gctttatgcg
     2221 atatagaaat tttgcttaaa gatttagtga gtgagttttt gcaaaaagta gaaaaaaaaa
     2281 ttttatggaa gaatattttt agcaagtata tgttagaatt tgaaaaatca agaaaattta
     2341 gcgtccatca tgaaggtaaa gttttttcac ttgaaaattc ttttttgtat gaagatggtt
     2401 caattttact aggtgataaa agggtgtata gtttaagatg agcgaaatta ttacaatagc
     2461 aaatcaaaaa ggtggagtag gaaagactac aacagcagta aatttagccg cttctttagc
     2521 tgtggctgaa aaaaaagtac ttttgattga tgttgatccg caagctaatg cgactacagg
     2581 acttggtttt aatcgtaata attatgagta taatatttac catgttttta taggaagaaa
     2641 aaagctttca gatattattt taaaaacaga attgccacaa cttcatttag ctccttcaaa
     2701 tataggtctt gtaggtatag aacaagagct tgctaaaggt gaaaataatg agaaaaagat
     2761 gctgcttaaa aatcaaattc aagaagtgat tgatgagtat gattttatta ttattgattc
     2821 tccgcctgct cttggaagta ttactataaa tgcttttgca gcaagcgata gtgtaattat
     2881 ccctatacag tgtgaatttt atgcgcttga gggcgtggct atggttttaa atacaattaa
     2941 aattatcaaa aaaactatta attctaaact cagggttcgt ggatttttac cgacaatgta
     3001 tagctctcaa aataatcttt ctaaagatgt tgtagatgat ttgaaacaaa attttaaaaa
     3061 acaacttttt actattaatg gaaacgaaga tgactttatt gtgatccctc gcaatgtaaa
     3121 acttgcagaa agtccaagtt ttggaaagcc tataattctt tatgatatta aatcgccagg
     3181 ttctgttgct tatcaaaatt tggcgtattc tatattagga taattataat gggattaaat
     3241 aaagataggg gtttaagtag tttaatcagt gatatggata ctgtttatag taaagaattg
     3301 ggttttgata aaaatcaaag cactatgata gaaattgatc aaatttcacc caatccattt
     3361 cagccaagaa agaattttga tcaagaagct ttagatgagc ttgctaattc tatcaaagaa
     3421 tttggactta ttcagcctat tattgtattt aaaaaaaata ataaatttat tttaattgct
     3481 ggagaacgtc gcttaagagc agtgaaagca ttaggaaaaa aagaaattct agcttttatt
     3541 gctgatattg atgagaataa gcttagagaa ttggctctta ttgaaaatat acaaagagag
     3601 aatttaaacc ctattgagct tgctaattct tataaggatt taatgcaagt tcataaaatt
     3661 actcaagaga atttagcaga acttattcat aagtctcgta ctcaaataac aaatacttta
     3721 agacttctga atttagatat tagaactcaa gagttgattg cttctggaaa aatttctcag
     3781 ggtcatgcta aagttttggt tggcttaggt caaaaagatg aaaaaatgtt ggttgatagc
     3841 ataataggtc aaaaacttaa tgttagagat actgaaaaaa tagttaaaaa aataaaaaat
     3901 aatgaaagct tacctaatca agaatttgaa gatgaaataa aaaaattaaa acaaatacta
     3961 aatcgctttg gatttgactg caaaaataaa aataatgatt ttgtaattca tttagaaaat
     4021 attgataaaa ttaaaaaatt aatcaaaatg cttgaaaagc tttaaccaaa atcttagctt
     4081 ttttatggta aaatagtcct tcgaaaattc taaccaagga gaattatgtt tgaagatatg
     4141 catccttcca taatgcttgc tactatggct atttttttag ctatgatagt tattttaaat
     4201 agtatgctgt ataagccgct tttaaaattt atggatgaaa gaaatgattc tataaaaaat
     4261 gatgagaata aagtaaaaga aaattctcaa gaagttttag gtgtgaatga tgaattagaa
     4321 gctattcata ttaacactag agaagaaatt caaaaaatta aacaaagtgc tatagctgct
     4381 gctaaagaag aggcagagca aattcttaga agcaagaaag aagaattaga aagaaaaatg
     4441 gccagttttt atgcagattt agccgttcaa aaaaaagagt tgcaagaaca tttaaacata
     4501 catttacctg agcttaagca agctttgcaa aataacataa agaaaattta agaggagaga
     4561 aatgagtaag ttattcttta ttatattttt gctacctttg tatgcttttg gtgcatcaaa
     4621 tggtagtgga gaatatgata ttattccaag gactattaat tttctaattt ttgtggctat
     4681 attgtattat tttgttgcaa ctccatttaa aaatttttac aaaaaccgta ttgtaaaaat
     4741 ttcttctaaa cttgatgaaa ttcaaaaaaa acttttagaa agtaaagcta agaaattaga
     4801 cacgatgaaa aaacttgaag aagctaaggc aagtgctgct gccgctttaa ttacagcaaa
     4861 aaaagaagct gaaattttag ttcaaaatat taaaaaagag actcaagatg agttagattt
     4921 acttcaaaaa cattttgagg aacaaaaaga ttatgaattt agaaaaatgg aaaaagaatt
     4981 agtatcaaat actttaaatg aaattttttc tgatccaaat atgacattaa aacagagtga
     5041 aataatagaa cttatgatga agaaggtatc ttaaatatgg aaaatataat tgcaagaaga
     5101 tatgcaaaag cgatagcttc aagagctgat ataaatgatt tttatcagaa tttgtgtatt
     5161 ttaaattctg cttttgtttt gccaaaattt aaaaatatta tagaatctaa tgagattaaa
     5221 aaagaaagaa aaatggaatt tcttgattct ttttttgata ttaaaaattc tagttttcaa
     5281 aattttttaa gacttttgat tgaaaattca agattagaat gcattcctca aatagttaaa
     5341 gaacttgaaa gacaaaaagc ttttaaagaa aatatttttg ttggtattgt gtattctaaa
     5401 gaaaaattaa gtcaagaaaa tcttaaagat cttgaagtaa aacttaacaa aaaatttgat
     5461 gcaaatatta aattaaacaa taaaatcagt caagatgata gtgttaaaat agaattagaa
     5521 gaattaggtt atgaactttc tttttctatg aaagctcttc aaaataagtt aaacgaatat
     5581 atattgaaaa ttatctaagg agaaaaagta aatgaaattt aaagctgatg agatcagttc
     5641 aataatcaaa gaaagaattg aaaattttga tttaaatctt gaaattgaag aaacaggaaa
     5701 gattatttct gtagctgatg gtgttgctaa ggtatatgga cttaagaata ttatggctgg
     5761 agaaatggta gaatttgaaa atggtgataa aggaatggcc ttaaaccttg aagagtcgag
     5821 tgtaggtatt gttatacttg gaaaaggaga aggtttaaaa gaaggtgctt ctgtaaaaag
     5881 acttaagaaa ttacttaaag ttccagtagg tgaggctttg attggccgtg ttgtaaatgc
     5941 tttaggtgag ccaattgatg ctaaaggtgt gatcaatgct aatgaatatc gttttgttga
     6001 agaaaaagca aaaggtatta tggcgagaaa aagtgttcat gagcctttac atacaggaat
     6061 taaagctatt gatgcgcttg tgccaattgg tcgtggtcaa agagagctta tcataggtga
     6121 tagacaaaca ggtaaaacta ctgttgctgt tgatactatt atatctcaaa gaggccaagg
     6181 agttatctgt atatatgttg caattggtca aaagcaaagt acagtggcac aagtggttaa
     6241 aagactagaa gaacatggtg ctatggaata tactattgtt gtaaatgccg gtgcttcaga
     6301 tcctgcggct ttacagtact tagctccata tactggtgta accatgggtg aattttttag
     6361 agacaacgca aaacatgctt taattgttta tgatgatttg agcaagcatg ctgtagctta
     6421 tcgcgaaatg tctttgattt tacgtcgtcc tccaggtcgt gaagcttatc caggcgatgt
     6481 tttttacctt cattcaagat tgcttgaaag agcaagcaag ctaaatgatg aattaggtgc
     6541 tggttctttg acggcattgc cgataattga aacacaagca ggagatgttt ctgcttatat
     6601 tccaactaat gttatttcaa ttacagatgg acaaattttc ttagaaactg atttatttaa
     6661 ttcaggaatt cgtcctgcaa ttaatgttgg tttatcagta tctcgtgtag gtggggctgc
     6721 tcaaattaaa gctacaaaac aagtttcagg cacattaaga cttgaccttg ctcaatatag
     6781 agagcttcaa gcttttgcac aatttgctag tgatttagat gaggcaagta gaaaacaact
     6841 tgaacgtgga caaagaatgg ttgaactctt aaaacaacca ccttattctc cgcttagcgt
     6901 tgaaaaacaa gtagttttaa tttttgcagg aaccaaaggt ttcttagatg atattgctgt
     6961 ttctagaatt gaggaatttg aagatggaat ttatcctttt attgaggcaa aacatccaga
     7021 tatttttgag caaattcgct ctaaaaaagc tttagattct gatttggaag aaaaactagc
     7081 taaagccatt aatgagttta aagcaaatca tttataaggt cttttatgtc taatttaaaa
     7141 gaaattaaaa gaaaaattaa aagtgtttat aacactcaaa agactacaaa tgctatgaag
     7201 ctagtttcta ctgctaagtt aaaaaaagca gaagaagcag ctaaaagatc aaaaatttat
     7261 gcacaaaaaa tcgatgaaat tttgagtgaa atttcagttc agatcaataa aattgttcac
     7321 aatgaagatg atgtgcgttt atctttgttt cataaaaaag aacaaattaa aaccgtagat
     7381 ttaatattta tcactgcaga taaaggtttg tgcggtggtt ttaatattaa gactttaaaa
     7441 acagtaagtg aaatgctaaa agaatatgaa gcaaaaaata ttaatattcg tcttagagct
     7501 ataggtaaaa ctgggattga atattttaat tttcaaaaaa tagaattgtt agagaaatat
     7561 ttccatctta gttctagtcc tgactatgag aaagcatgtg aagtaattca tgctgctgta
     7621 gatgattttt taaatggaaa tacagatgaa gtgattttag ttcataatgg ttataaaaat
     7681 atgattaccc aagaacttaa aattaatcat cttattccag ttgaaccaaa gagtattgaa
     7741 cagactcata attctctttt agagcttgaa ccagaaggaa ctgagctttt agaagattta
     7801 ataaaaacat attttgagta taatatgtat tatgcgttaa ttgattcttt ggcggcagag
     7861 catagtgcaa gaatgcaagc tatggataat gcaactaata acgcaaaggc aagagtgaaa
     7921 caactgaatt tagcttataa caaagcaaga caagaatcta ttaccactga gcttatagaa
     7981 attatcagtg gtgttgaatc aatgaaatag taaattttaa ggagaagata aataatgcaa
     8041 ggatttattt cacaggtatt aggtccggtt gttgatgtag attttaacga ctatttacct
     8101 caaattaatg aagcaattgt tgtaaatttt gaaagcgaag gaaaaaaaca taaacttgtt
     8161 ttagaagtag cagctcattt aggagataat agagttagaa ctattgctat ggatatgaca
     8221 gatggtttgg taaggggctt aaaagctgag gctttaggtg ctcctattag tgttcctgtt
     8281 ggtgagaaag ttttaggaag aattttcaat gttactggag atttgatcga tgaaggtgaa
     8341 gaaatttctt ttgataaaaa atgggcaatt catagagatc caccagcttt tgaagatcaa
     8401 agcacaaaaa gtgagatttt tgaaacaggg attaaagttg tggatttact tgctccttat
     8461 gcaaaaggtg gtaaagtagg tctttttggt ggtgcaggtg ttggtaaaac tgttattatt
     8521 atggagctta ttcacaatgt tgcatttaag catagcggct attctgtatt tgcaggtgtg
     8581 ggtgagagaa ctcgtgaagg aaatgacctt tataatgaaa tgaaagaaag taatgtttta
     8641 gacaaagttg ctctatgtta tggacaaatg aatgaaccac caggagcaag aaatcgtatt
     8701 gctttaacag gtttaacaat ggctgaatat tttagagatg agatgggact tgatgtgctt
     8761 atgtttattg ataatatctt tagattttca caatcaggtt ctgaaatgtc agcactttta
     8821 ggaagaattc catcagctgt gggttatcaa ccaaccttag caagtgaaat gggtaaattc
     8881 caagaaagaa ttacttcaac taaaaaaggc tcaatcactt cagttcaagc tgtttacgtt
     8941 ccagctgatg acttaaccga cccagctcca gcaactgttt ttgctcactt agatgctaca
     9001 acggttttaa atagagctat tgctgaaaag ggtatttatc ctgcagttga cccacttgac
     9061 tcaacttcaa gaatgcttga tccaaatatc attggagaag aacattataa agttgctcgt
     9121 ggtgttcaat cagtgcttca aaaatacaaa gatttacaag atatcatcgc tattttaggt
     9181 atggatgagc ttagcgaaga ggataaactt gtagttgaaa gagcaagaaa gattgaaaaa
     9241 ttcttatcac aaccattttt cgttgcagaa gttttcacag gtagcccagg aaaatatata
     9301 agccttgaag atacaatagc aggatttaag ggaattttag aaggtaaata tgatcattta
     9361 ccagaaaatg ctttctatat ggttggaaat atagatgaag ctattgcaaa agcggataaa
     9421 ttaaaaggtt aatttatgaa cgatttgatt aatttcgaga tagttacgcc tttgggtgta
     9481 atctatcaag gagaagtaaa atctgttact ttaccgggta gtgaaggaga atttggcgtg
     9541 cttaaaggac atgctgcttt ggtttcttct ttaaaatctg gagtaattga tattgaaaaa
     9601 gctgatttaa accatgaatt aattgctatt gatgctggac atgcaaaggt agatgaagat
     9661 aagatttgcg tgttagcaaa gggtgcggtt tgggtttgtg gaagtgatga aagtgagatt
     9721 gaaaaaaatc ttgctcaagc aaaagatttg attaaatcta tgagttctga taatgcagct
     9781 ttagcagcaa ctttttcaaa acttgataat gcaaggatgc attaatgaat tttgaagcta
     9841 tatttcattt tttcaataat tcaagtatta ttacttatat agttttatta tggctttctt
     9901 tatattttat tttagcattt agtattttgt ttgctagatt gacttatttg gctacatgga
     9961 gaaataagga aaaagaaagt ttagaaactt tactcttggg tgagaaggat ttaagtcgta
    10021 ctgattcgat tttaagaaaa tgcaatgata caacttcaaa tcatttagaa atctataaaa
    10081 atttagcaag tcgccgcgct tctgctggac ttacttggct tagtattatt gcttcaactt
    10141 caccttttat aggtcttttt gggacggtta tttctatact tgaaactttt ggtgggcttg
    10201 gaactcaaaa ttctttaagt atcatagctc ctaaaatcag cgaggcttta gttgctacag
    10261 gttgtggtat tttagtagca attcctgctt atacatttca tctcatcatt aaaagaaaag
    10321 cttttgaact tttaagcatt attgatagcg agattaaagt tataagttcg agtaaataag
    10381 gttaaaaatg ccatttgatg atgaaaaacc tgagcttaat atcacacctt tagtagatat
    10441 tatgcttgta ttgcttgcga ttttaatggt aacagctcca agcattactt atgaagaaaa
    10501 aattaatctt ccacaaggta gtcaaaaaaa tactagcgct ccaactgtta agagtttaat
    10561 tattagtatt aatgcaaaaa aagaaatttt tttaaatcaa gaaaaatatg attttataag
    10621 ttttgctgac aatcttgctc aaagaaaagc acaatttaat accgaagatc cggtttttat
    10681 acgcgctgat aaaagcttaa aatatgacga tgttatttca gtcttaagaa gtgtaaaaaa
    10741 tttaggattt aataaagttg ctttacagac tgaataatca tgaaaaatta tggtttgagt
    10801 aatttaaatt cgtttttact tgctttagca atatatatta gtatagtaat tcttgttttt
    10861 tttagacttg taagcgaggt tgaacctgct atacaatata ccgatataaa agatagtttt
    10921 gtagatattg aacttgctga accatcaaaa caagttatta ctcaaagcaa cactcctaaa
    10981 gaaatacaaa aaccaacaga gcaagttgat atagaaaagc tttttgctca gactacaaat
    11041 aaaacagtta aaacagaaga tattgaccaa aaggcaagta attttaatga gctttttgga
    11101 aatatcaaag aaatacaaga agaaaagact acaaaaattc aatcaagtgc taaatcagga
    11161 gcttctagcg ccccaaaacc tcaagcttcc gaacttgtaa agcaacttaa tgatagttta
    11221 cttcaagaag aaagttcaac gcaaggccaa agcacaaagg cgcaaaagat tggaatttat
    11281 gatgaatttt tagggaaagt cgtgcgtatt atcacccaaa gatggactca gtattatcca
    11341 aatagtgaaa aaatttctgt taaggtaaaa atttttattg atgaaaatgg aaaatttggc
    11401 tatacttcag ttgaaaaaag tgggaatcct ttatatgatg ctaaagtggc tgaattttta
    11461 gaaagtcaaa aaggtaaatt tattacttat cctccgcaaa ataaaaatat aagcattacc
    11521 atgaatttaa gagatgaagc aaaagttaaa aatgattagg agaaaaaaat gaaaaaaatt
    11581 gtagcaattt ttttagtctt tttaggaagt ctttgggcag aagatccagt gattgatgtt
    11641 gttaattctg gtgtagtttt accaaagatt attgttaaag ataattcaaa tttaagtgat
    11701 gagaatttaa agaaaagctt ttataatatc attgtgaacg atttgaaagt aagttcaaac
    11761 tttgaagttg ttgctaatgc aactgagaca agtaattata cttttgaata cgctttaaat
    11821 aaaaatggta acactttgag tttaaatgta aaaataaaag ctggcagttc tgataagtca
    11881 gagcaaactt atactttaaa tggtttagag caatatccat ttttggcaca taaaagcgtc
    11941 aaagcttctg taaatgcgtt aggacttgca tctgttgatt ggatggatca taaaattttg
    12001 atcgcgagaa attctagctc taaaaaaagt caaattatta tggctgatta tactttaact
    12061 tatcaaaaag ttattgttga tggtgggctt aatttatttc caaaatgggg aaataaagaa
    12121 caaactctat tttattatac agcttatgat catgataagc caactttata ccgttatgat
    12181 ttaaatacca ataaagctag taaaatttta tcaagtggcg gtatggttgt agcaagtgat
    12241 gtgagtgtag atggaagtaa actacttgtt accatggctc caaaagatca gcctgatgtt
    12301 tatttatatg acttaaatac caaaaatcta acacaattaa ctaattattc tggtattgat
    12361 gttaatggaa attttattgg ctcagatgat agtaaagtgg tatttgtaag cgatcgttta
    12421 ggatatccta atatttttat gcaagattta aatagtaata gtgctgaaca agttgttttt
    12481 catggtagaa ataattcggc tgtttcgact tataaagatt ttttggttta ttcaagtcgt
    12541 gaaccaaatc aagcaggtgt ttttaatatt tatttgatgt caattaatag tgattatatt
    12601 cgtcaactta cggcaaatgg aaaaaattta tttccaagat tttctagtga tggtggaagt
    12661 atagtattta tcaaatattt aggtgtgcaa agtgctttag gtgttattcg tgtaaatgca
    12721 aataagactt tttattttcc tcttagggtt ggaaaaattc aatcaattga ttggtaaaaa
    12781 tttcaatttt aggttaaaat taattaaaaa ttagatataa tagtaagaat ttattaactt
    12841 tgaaaggtca taaatgaaaa aaattctttt tacttcaatt gcagctcttg cagttgttat
    12901 tagtggttgt agcacaaaaa gcactagcgt aagcggtgat agtagtgttg attcaaatcg
    12961 tggttcaggt ggaagtgatg gttgggatat tgattcaaaa atttctcaac ttaatgatac
    13021 tttaaataaa gtatattttg attttgataa attcaatatt cgtcctgata tgcaaaatgt
    13081 tgtaagcaca aatgctaata tctttaacac tgaagtaagc ggtgtaagta ttactgttga
    13141 aggaaactgc gatgagtggg gaaccgatga atataaccaa gctctaggtt taaaaagagc
    13201 aaaagctgta aaagaagctt taatcgctaa aggtgtaaat gctgatagaa ttgctgttaa
    13261 aagctatgga gaaacaaatc ctgtgtgcac tgaaaaaact aaagcttgcg atgcgcaaaa
    13321 cagacgtgct gaatttaaat tatcaagata attaatgaaa aaaatattca cagtagctct
    13381 tcttggagct actttacttt atgcagaaag ctcagctttt ggtgcaggag atataacaag
    13441 caattcttct tatggtttaa cttcaaatga aaaattattt aaagaaaagt tagataattt
    13501 aaataatgaa aatatacaaa caaatgctag aattaatgaa attaacgaaa gaatcgaggg
    13561 tttacaaagc actttagaag gtataaattc tcaatatgct aaatcaaatt ctagattaag
    13621 tcaagttgaa gagaataatc aaaatattga aaataatttt actagtgaaa ttcaaaaatt
    13681 aaaggcttat gttgaagaaa gtagaaaaat tcaagaagct aataataagc aagtaaaaaa
    13741 agttttagcc gaacttagtt ctttagtaga tgctattaat gcaaattatg tttctaaaaa
    13801 cgaattaaat gatgcaaatt taagcgttaa aactattaca cctagtgttg ttgtttcaac
    13861 tacagattca aatagtacca ttgaaaacaa taatactcaa aatacccaag atgataaagc
    13921 aaaacaaatt gatgaatctt ggaaaaagaa aaaaaataat gaaattttag aattagcgat
    13981 aaaagatgtt gataaaaatg cttttgaaga ttccaaagca aaattaaatt ttctcataac
    14041 aaagcagtat aaacccgcaa gagcaaattt ttggttaggg gagatcgagt ataaacaaaa
    14101 aaattataac aatgctattg tttattataa aaaaagttct tctttgagta caaaagggga
    14161 ttatttccca aaacttttat atcatactgc catttcattg gataaaacag gtgatacaaa
    14221 aacagcaaat ggtttttata aagctttaaa aactaattat ccaaattcac ccgaagcaaa
    14281 agcttcacct aatagaaaat aaattaagga gataaaatgg ctatagaaaa aaatagtgta
    14341 gtttcaatgt tttatgagtt aaaagacgca aatacaaatg aagttttaga atcaaattta
    14401 tactctcaac ctatttcttt tattttaggc aaaggtcaga ttttagaaag cttagaagaa
    14461 gaagtgatga agcttgattg ccctagcaat gctgatgtgg taattaaaaa agaaaaaggt
    14521 ttaggcgaat acgatgaaaa tgccgttcaa actttaccaa aagagcaatt tgcaggtatt
    14581 gatttaaaag taggtatgga gctttttggc gaaggtgaaa atggcgaaac cgttcgtgta
    14641 actgtaaaag agattggcga aaatgatgtc acaattgatt ataatcatcc ttatgcgggt
    14701 cgtgatttgc ttttttcttt aaatatcgta gatgctagag ctgcgagtga agatgaaatt
    14761 cttacaggta ttatcgcagg aagtcatagt tgtggttgtg gaagcggaca tgggcacgat
    14821 catcatcacg gacacggaca cggacacggt ggtggcggtt gctgtggtgg tggcggttgc
    14881 ggttgtcatt aatgaagact gcgtttatat ttccaggtca aggctcacaa agtcttggca
    14941 tgggaaaaga tttttatgaa aactctataa aagccaaaga actccttcaa aacgcaagtg
    15001 atttttgtaa gattgatttt aaacatttgc tttttgaaga aaacgaaaaa ctcaatcaaa
    15061 gtgaatttac tcaacccgcc atcgttttaa attccttaat ggcttatagt gttttacttg
    15121 aaaaaaaacc tgatttaagt tcgaaatttg ctttagggca ttctttggga gaattttcag
    15181 ccttagctgt caatggtgct tttgattttt tagaggctct ttctttggtc aataaaagag
    15241 ggctttttat gcaagaagat tgtgcaaaag ttgaagcagg tatgatggtg gttttggggc
    15301 ttgatgatga aaaggttgaa gagctttgtc aaaaagcaca aaaagaaaac aagcaaattt
    15361 tcgctgcaaa ttataactgc gatggacaaa tcgttgtagc aggtttaaaa cctgatttag
    15421 caagttatga aagtgtattt aaagaagcag gagctaaaag agctatgctt ttaaatatga
    15481 gcgtggcaag tcattgtcct cttttggaaa atgcttcagc taagctttgt gtggagcttg
    15541 aaaaggtgtt aaaaccaaat tttaaagccg tgctttctaa tgcaaatgct aaaatttata
    15601 catgtaaaga agaagccctt gaacttttaa aagcacaact tatctcacct gtgctttata
    15661 aacaaagcat taaggcatgt gaaaatgaag tagattattt catagaattt ggtgcaagcg
    15721 tgcttaaggg tttgaataaa aaaatcactt caaaagaaac ttatgcttta acaaatatga
    15781 atgatattga tgaattttta aaggttatat gatgaaaata gcaattttag gagctatgag
    15841 tgaagaaatc actcctttac ttgaaacact taaagattat acgaaaatag aacacgctaa
    15901 taatacttat tattttgcaa agtataaaaa ccatgaactt gttttagcgt attctaaaat
    15961 tggcaaggta aattctactc ttagtgctag tgtgatgata gaaaaatttg gcgcacaagt
    16021 gttgcttttt acaggagttg caggtgcttt taatcctgaa cttgaaattg gtgatttgct
    16081 ttatgcaaca aaattagctc aatacgatct tgatattacc gcttttgggc atcctttggg
    16141 ttttgttcca ggtaatgaaa tttttatcaa aaccgatgag aaattaaaca atcttgcttt
    16201 agaagttgct aaggaattaa atatcaaact gcgtgcaggc attattgcaa cgggtgatga
    16261 gtttatttgc gatgaagcaa aaaaagcaaa aatcagagaa attttcaatg cggatgcttg
    16321 tgaaatggaa ggcgcaagtg ttgctttggt ttgtgatgcc ttaaaggtgc cttgttttat
    16381 cttaagagct atgagtgata aagcagggga aaaggctgaa tttgattttg atgaatttgt
    16441 gatcaattca gctaaaattt cagccaattt tgtgcttaaa atgtgcgaga aattatgata
    16501 aatcttagca aaaaacttat acgccaagtt gcacaagcta atgctaaatt tggacttatt
    16561 aaagatggag atagggttct tttagggctt agtggcggga aagattcttt ggctttagcc
    16621 catcttttaa atcgtatgca agctcacgct ccttttaaat ttgaacttga agcagtaact
    16681 ttgagttatg gcatgggcga ggattattct catcttcatg cacattgtga agaacacggc
    16741 attaaacata gcgtgcttga ttcaaatatt tatgaagttt caggcgatac cataagagaa
    16801 aattcaagtt tttgtagtta tttttcgaga atgcgtcgtg gagctttata tacttacgct
    16861 cttgaaaaag gttttaacaa gcttgctata gctcatcatt tagacgatgc agcagaaagc
    16921 ttttttatga attttattca taatggagct ttaagaacct tagcgcctat ttatcaaagc
    16981 aaacgcggtg taactgtgat acgccctttg atttttgtgc gcgaaagaca acttagggat
    17041 aatgctacac aaaatgaact tagcgtgata ggaaatgaat tttgtcctgg tatgaagcta
    17101 agtgaaaaaa atgtaaaatt tccacacgct agagaagaag ctaaacagct tttagcaaat
    17161 ttagaaaaaa atcatcctaa gctttttaca agcttaaaaa ctgcttttgc aaatttacac
    17221 acagaaagtt tttggttaga aaaggaatag tttaatgaaa aaagcttttg ttttagtgga
    17281 ttatcaaaat gattttattg atggaagttt aggttttgat aaggctttaa aaatcaaaga
    17341 aaatattctt aaagccttaa atcaaatcga ttttaataac acgcatttgc ttttaaccta
    17401 tgatacgcat gatgagcatt atctacaaag taaagaaggt ttaaatttac ctgtaaaaca
    17461 ttgcattaaa gagagtttgg gttggcaaat gccaaaggaa tttgaacctt ttttacaaaa
    17521 agctcataaa attttttata aaaatacttt tggtagctta gaattagcta atttcataca
    17581 aaaaagtgat tatgaagaac ttcattttgc agggcttgtt tctcatattt gtgtgttttg
    17641 taatattatt ttagcttttg gtgctaagcc taatgcaagg ataattttac accaaaattt
    17701 aagtgcaagt tttgatgaaa atttagaaaa atccgctttt gatatactta gggcttatgg
    17761 tattgaaatt gtttaatgca aggctttata cttcatactc aaaaagttaa agatgaggat
    17821 ttgattgttt atattttaag tcctaaaatg cttattaagg cttatcgttt ttatggactt
    17881 agacattcta gtattttaag cggctataaa atcgactttg ctttagaaga aaatcctagt
    17941 tttttaccaa gacttaaaga tgtgttgcat ttaggatttt tatggatcat gcaaagggat
    18001 aaaatgctta tttggcaaga atttatccgt cttttatata gacacttaaa agatgtagaa
    18061 gagcttgata gtttttattt tgatttactt caagagtgtg tgaaaaggtt tgaaaaacaa
    18121 aatccaaagc gtgtcattgt cgatgcttat ttaaaaattt tggaatttga aggaagattg
    18181 cataaagatt ttttttgttt tgcctgtgat gagaaaattc aaaattccat tacactgtta
    18241 agggcttttt taccttcgca ttctcaatgc gctttaggat ttgagtttga agagaaaaaa
    18301 ctaaaacaat tttatagcag taaaaattgt gcgatttttg atgatgaaga aatagaaaat
    18361 ttataccatt tgattaagga aggtttatga tattaagtga tgaaaaatgt gattttttag
    18421 aatctatagc aagtttttta ggtcctaaag atgtggagct tgtctttgtg gatagtaaag
    18481 aaatgcaaga aattaactta gagcaaagaa aacaagataa aaccactgat gtactttctt
    18541 ttccgcttga aaatattgat gagagtttgc ctttgggttc tgttgtgatt aatgtggatt
    18601 tggcaaaaga aaaggctaaa gagttagggc atagctatga agaagaaata agcttgcttt
    18661 ttatccatgc tatgcttcat ttactaggtt ttgatcatga aaatgataat ggagaaatga
    18721 gagaaaaaga gaaagaactt atagagtatt ttaatttacc taaaagtttg attgtaagga
    18781 ctttgggata actccacccc aaaacggaac agattttgct tgtattagtt atataaatat
    18841 atttaggttg aaggcagaaa aatctaaatt aaggaattaa tatgagtatc tttagtatca
    18901 atgataactc aaactatggt tctatacttt cacaagcaaa agctaataaa gaaagtaaag
    18961 aaaattctaa aataagtttt gctaatgctt ttttaaaaca aaatgctagt aaattaaatg
    19021 aaattcaaaa tgcaaattca caaactctag caagaagtga agtattaaat tctactaata
    19081 caacaaatac tagcaataat actaatttta gtataagtag taagacaagt tctcctaatt
    19141 atgatatatc aagtgaattt aaaaactcta tttatactct aaaatataaa caagaagata
    19201 caagcaatat tgtatcttta gcttatggtt atggagtaga tgctaatggt tatatgggaa
    19261 gtgattttaa caaagccgca ggattacctg aagattttaa gatacataaa tctactttgg
    19321 atgagataga gagatttaat caacataata tggctagtga aaccagtgga aactattatg
    19381 atagttttga tatggcttct attgttaaat cccattataa tagttttaat caagtaataa
    19441 gtgcatttcc aaatgataaa acaagtttta gcgaagctga tttagagcaa ttaccaaaag
    19501 gactaaatga tggttgcaat caaaacaaag aatatattgt aacacatata tttaacgcag
    19561 aacaatttca cgaagcacaa gcgattaagt attctactat gaatttgggt atgaacctta
    19621 tgaaacttga cttttctcca caaagcatgg agcaaggacc ttcaaatgaa ggtgaattta
    19681 atcctgatat gtcagtttat ccacaaaatg aagatggaag ttattctaaa gaagctttat
    19741 ttatgagttt tttaaagtct tattcgccta ttccatctcc aaatcaagtt gttttgagcc
    19801 ctgaagcaaa agttcgtgaa gcaaaacttg agctagaaat gaaagcaaat ccttctttta
    19861 gcgtttcctt agacgacatt atgacaggca aagtagattt tgcaagtttg ttaaaaggct
    19921 atgcacaaga tggttggctt gatgcaggta tttatgcaat ggaaaaagga gttgcttggc
    19981 aaaatacaag cataggctat ggtggagctt ggtttgataa tcagtttaat caagcaaagg
    20041 ctaatggctg gaaagcaagc agtgaaagta taaattctta tgttggatct ataatggata
    20101 gacttaataa tcttatagga caaactaggg tttagaaaaa actttcgatt ttttcttgca
    20161 ttatcttagc atcattgata cgattgactt catctctaaa ggctgaagcg tctttatgcc
    20221 ctttagaata ctcgtgtaaa tgcttgcgaa atatacttac gccttgatct ttgtagtgtt
    20281 ttatcatttc atcaaaatga gtgagtatga tttctttttt gagtttttca tctacacttt
    20341 taccgctttt gatttcataa aatatccaag gatttcccac gcttgcacgc cctatcatga
    20401 gtccatcgca ttttgtgatt ttataaactt ctttagcatt ttgtgcgtta atatcgccat
    20461 ttgcaatcac aggaatacta acgcttgctt tagcactggc aatggattca taatcggctt
    20521 ttccgctata aagctgtttt cttgtgcgtc cgtggatact tataaaatcc acccccaagc
    20581 tttcacaaat tttagccatt ttttcaggat atttttcatt aaatcctagt cgaaatttca
    20641 cacttgtaag gcttttttta ttgttttctt taatcactcc tacaagattt ttaaaaagct
    20701 ctaaattttc tagcaaagca ctgccagcac attgtttaac aactttattt acagggcaac
    20761 cgcaattaaa atcaatccca tctacaaaat ccatttcatt taacatttgc actgcttttt
    20821 ttagcacttc tttatctcca cctgcaattt ggactatata gggattttct aattcagctc
    20881 tttctagcat atgtaaagtt ttagaacttt cataaactaa ggcattagaa cttatcattt
    20941 cacttatggt aatatcagca ccaaattttt ttactacatt acgaaaaggc agatctgaaa
    21001 aacctgccat aggggctaaa aataaaggtt ttttgctaaa atctatcatt gtatgagttg
    21061 gtttagatcg attttgatat ttttttcacg caagactaaa aaggctttaa aatcattaaa
    21121 tttcttatca tcattgtgaa tttgttctct taactcatct aaaagtccaa attcagctaa
    21181 aagatataaa tgtgctctta aagcttcgct tttttcattt ttaattttat taaaaattcc
    21241 taaaatagca tcaggattta aaagtttggt acttagtttt gctgcgttaa gatagtcttt
    21301 ttcgcttagt gtattgtgtg aaagtaaaac ttcatattct gctacactaa gttctaaatt
    21361 tccttcttta aaacgtttga taagtgtgag aacttcagaa ggctttttag gtatttttac
    21421 atttttaatt tgctcataac tagctttttc tataagagtg ttaaaagcaa tttcttcaaa
    21481 ttcatctttg atttcattaa ggtttttaag tttgttatag gcataatttg catcgttttt
    21541 gagatgattt ttttcatttt gcaaatataa aacattgtta ttttcgagtt taaatttgct
    21601 aaggttaaaa aattcgtttt tatttaaacc atcaataaga tctaaaattt cattgatttt
    21661 atttgagtgt ggaatttttt catgtgtttt tatggtttta aaaagttgtg ctacagctct
    21721 aaattctttt gtttgaaaag tagttttaag atctttttca aggagcaaat cttgagtata
    21781 agcttcaaat ttagctgcat ctttaaaaaa atgcttaaat tttaaataac gcaaaaatcc
    21841 ataaaatgct atgtgtaaaa cggctaaaat catataaata aataaaggaa taacaagcca
    21901 tatcataata ggtagttcaa aagtataagt gctgatattt agagtatagc ttcctagttc
    21961 tagatgccaa gcaaaggcaa aaataagtgc tatataaata aaacttgcaa gtaagaagag
    22021 tttaattttc atgttttttt ccttgttctg caatttgacg gcaagtgata caatatcttg
    22081 cgtgaggttt gacttttagt ctttgagagt cgatttcatc atcgcaagat tcgcaaattc
    22141 cataagtgcc gtttttgatt ttatctaaag aatcttcgat ttctataagt tcttctttga
    22201 gattggtact gatagcaaag tcaatttgag agcctgtttc tatgacagaa aaatctacac
    22261 tatcgcttgg gacgctattg tgaagagctt cgatttcatt tgaattgctt tgcaaatttt
    22321 ctaagatggc tttttttctt tcttctaaaa tatttttgaa attttgtatt tcattttttt
    22381 tcattttaaa actttctatt tgtgataagg gtgattgttg ttgatacaaa atgcacgata
    22441 aatttgttct aaaagtaagg ttttaacaaa ttgatgtgct aaagtaagtt tgcttaatga
    22501 tagtctaaaa tccaaacttt gattaaattc ttctcttaaa ccataagcac cgcctataaa
    22561 aaaacttaat tcatttttat cttggatgag ttttgcaaat tctatacttg taagatcttt
    22621 ccctttttca tcaagagcga tacaatagcc ttttttataa ggcataaaag cttcttcata
    22681 gctttttttt gcttctatgg catttaaatt ttgagctaag gctatttttt tattaaaaac
    22741 atttatttct tttaaagtgg cgtatttgga gatgagttta gagtatttct cactccaagt
    22801 tttaaattca tcactttttt gaatacaaaa gatattaact tgcaaattat tttccactaa
    22861 aaaattttag tacatcgcta agatattgtt tttgttctcc tctttcaact atagcatcta
    22921 taagtccatg ttctaacaag aactctgctt tttgaaaacc ttcaggtaaa tctgctccta
    22981 tagtttgttt gataactctt gcaccagcaa aacctactaa agcttcaggt tcagcgatga
    23041 ttaaatctcc aagccaagca aaagaagcac ttaccccacc catagtagga ttagttaaaa
    23101 tactaatata aggaagtttt tctttgctaa gaagtttaag cgcggcacta gttttgctca
    23161 tttgcatcaa agaataagta ctttcttgca ttctagctcc accacttgca cttacgatga
    23221 caagaggggt tttacttgtg atggctcttt gtatagctct aacgattttt tctccttcaa
    23281 cagaacctaa agatccaccc ataaaagaaa aatcaaatac aacaagttgg gtttttaaac
    23341 tgttgatttc acattctccg ctgatgacag aactttttct acctgtttta ctttcacctt
    23401 cgctaaggcg ttttttatag gatttgctat caacaaattt taaaggatct atagcttcta
    23461 aatttgcatc atactcaata aaactgcctt catcgcttaa aagtttaata cgttcatcag
    23521 ctgaaattct catgtgataa ttgcatttag gacaaacatt aaaacaagat tctatttctt
    23581 tataatacat caaagcatga caactttggc attttaccca gtgatttgga gcttctttaa
    23641 tactaggttg ttgtcttctg atctttgaaa aaatatctgc aaaattcata tattcaccta
    23701 attatttttt aaaaattcca agattatatc aaaaattttc ttgtcttggc ttaggagaag
    23761 gaaattttca tttttttcta tatataaatt ttgatgaatt gctaaagcag ctgctgtatc
    23821 aaaaattcgt gtttttccaa gaattaatac aaaactaaaa tacgaagcat aagcaagact
    23881 taaggctgtt gcacccaaag agcgaaattt taattgattt tttgttaaaa aatcgagaag
    23941 ttctggatga agtgaaattt tttcaactat acctatttta gaaaatagat taggtgttaa
    24001 gggtgagtat tttggatcgg aaagattgga tttaaaagct tgattgttat taaaagcaaa
    24061 aatttcttga ctgacaagat tgcaaacaaa agcgcttttt gcctgatctt tttccataag
    24121 agctatagaa gttccataaa atggtatttt agaaacaaaa tttgaacttc catccaaagg
    24181 atcaagaatc atttgttttg ggctagcttt tccgatcaat ccgctttctt cagaaaaaat
    24241 ttgtccaaaa caactaagat attttatgaa aatttgttca cattttaagt caagctcata
    24301 gccttgattt ttatcatagc ctaatttaga gcaaagttta agatcatttt gtgggatatt
    24361 gtttagatac ttgcgtattt gcaaatttgc attcaagcaa gcatctaaaa attctttcat
    24421 taaaagcgtg ttccaagatt aaattcaaaa ctattagtat catcaccttt tttatcatta
    24481 agaggtttgg caaatacaag ctgtaaaggc ccaattggtg taatccattc aatgcctata
    24541 cctgtactca ttctttttat ttcatctaaa tttttacgtc ctatcatacc ataatcaaaa
    24601 aacacgctac cacgaagttt gattctatca atcaaaggaa aactaagttc tacagaattg
    24661 gcaaaagcta tggttccacc tacttcatct ccccattggt ttttaggact tactgttctg
    24721 ctttcaaaac cgcgtatcga tctaatacca cctaaataaa ttctttgatt aatcggtaaa
    24781 tagccttcat cccatacttt ataaaaactc gctttatagc gataaataag atcatatcct
    24841 atatagtctt gtaaaccttg ataaaagtta aatttagagc ttgatgaaat aaattcttga
    24901 tctccgccaa gtccagcgta ttctaaacta gttgaagcaa tgatacctga tcgtggcaga
    24961 taataatcat ctgtattgtt aaaggtgatt gctggagtta tagagctttt aatacttttg
    25021 ccaagttcat atcctgttct taaaagagtt ggacttaagt ggtatatatc gctttgttca
    25081 agattataag ttaagcttac attatagtat cttgcaaatt ggcgtccaac tgttatatca
    25141 aagccgtaat ttttttctga ataattatcc cattcatagt catttgaata aagtgttcca
    25201 cccagactat attgactatc aagaacgcgt ggatttatga gactaatcct tcctgataag
    25261 gtatcatcgc ttttatctac gcttacagag ctttttattc ctgaaccaaa gatatttgta
    25321 tctgataaag aagcgttaag caaaatacca tcgcttgatc catagccaat gcctccagaa
    25381 atagctcctg tagaagcttc tttaacatca acaatcaaat caatatgtgt atcatcaact
    25441 ttttcttctt tgatatttac atcgtcaaaa taagaagttc tttttaaagc attttttgac
    25501 tcgcttaagt ctgttctatt gtataaatta ccttctgtta tatataattc tcggcgtatg
    25561 acgcgatcta cagtacgtga atttcctgaa ataataacat ttcttatata aactttatcg
    25621 tgagggatta ctttaaatac aacggtggct tcttgagttt gatcattttt ttgaatatca
    25681 ggatagactt ctacaaacgc ataacccaaa tcagcacttt gtgtttctat ggttttaaca
    25741 tcttttctaa tgtcttcaat attgatagtt ttgccagcac ttgatcttaa atcttttacg
    25801 gtttgtgcat tttgtttatc atcaaataaa ggattttcta tgcttatact tttaatttta
    25861 taaggctttc cttctttgat aaaataagtc aaatttgctt gataagtatc tgtgtaggtt
    25921 ttaagataag gcgaggatac ttgaacatct aaatatcctt ttttcatata ttcatcagca
    25981 attcttgaac tatcgttact aagttcaaaa acttttaatt ttccatcatt gcgtccccac
    26041 atccatccca taaattcttt ttctttgtta acaacagcag gttctatatc agaatatgaa
    26101 aatttcttgg ctccacttaa atgaacatta tcaataatga tattttcgcc acgatttact
    26161 ataaattcaa gctctagtcc atcggtattt tctaaagtct tttttttgta ttctacaata
    26221 gtatcaaaat aactttttgc ttcataataa gctttaatgc gttcaatagc ttcttttata
    26281 cttccttcat caagtagtgt gcctctttta atccctaaaa tactttcaac ttgttttcta
    26341 tcatttgaag ctatacctgt gatagtaacc tttgctatag ttggtttttc ggtaactata
    26401 atttccaaaa ttccattgtt gttttctact gcaatatttt cgaaataatt ttgtttataa
    26461 agattaagaa tagcagtgtt gatttttgca ggatttattt cctcgcctat tttaagcccc
    26521 gtgatattta tagcgcttgt gttcgataaa tgatttaatc cgataaattt aatatcttta
    26581 atggttgctg cattggctat agcaactaaa gcacaaatac taataagatg ttttttcatt
    26641 gattttttac ctaaagcttt attaaaagct gtataatagc aaaaaaaatt taacaaaaaa
    26701 actaaggtag aaagtatgaa aatagcaatt atagggcttg ggcttatggg cggatcttta
    26761 gggctttgtt tgaaagaaaa taagcttatt tcttgtgttt atggtatgga tttaagtaaa
    26821 gaaaatgaaa aagatgccct gcgattaggt cttattcatg agcttataga atttaaagat
    26881 ttagctttat gtgatatgat ttttgtcgca actcctgtta atgctattat agaaattttg
    26941 caaaagttag ttgatttgcc ttctaatgta acaattatag agcttggaag tacaaaaaga
    27001 aaaattatag aaagtttgcc taagaattta atcaaacaaa ctctttttgc tcatcctatg
    27061 acaggaactg aaaattcagg tccaaaagcg gcttttaaag agctttataa agatgcagtt
    27121 tgtgttcttt gcgatagtga aatagctgat gatttgcatc aaaaaagagc agtagaaatt
    27181 ttttctcatt tagggatgaa aattgttttt atggatagta aagcccatga tcatcatgct
    27241 gctattattt ctcatttgcc tcatgttata agtttttctt tggcaaattt tgtaatgaaa
    27301 gaagaggata aaagaaatat tgttcattta gctggaggat cttttaaagg tatgagcaga
    27361 attgccaaat catcgccaca aatgtgggaa agtatttttt tacaaaataa agataactta
    27421 ttaagttcta ttgatttttt tcaacaagaa ttagagagat gtaaacaaat gatacaatta
    27481 gacaaaaatg atgaattaag agaatggatg aaacaggcta atactctaag agaaatttta
    27541 taaatttgct agatatttac tgaaaatata atagaattta tactaaaaac aacaaaaaca
    27601 ttgaaaattt ttaaggaagg ttatggcaaa aagaaaaggc aaaacttatt tatctgtttt
    27661 aattttagtt ttaatagcaa ttttgatttt ttttatttca agattaagta tttttgaaaa
    27721 aaatcctcct caaattttaa tgccagatgt tgtatatact gatcttaaaa aacctatttt
    27781 agtgcatgta aaagatgatg aaagttctat caaaaatgta caaattatat tgcataaaga
    27841 cgacaatact agtgcaatgg ttatagcaga tgaaaagatt tctaatttaa aagatattac
    27901 cttacaagtt gctttgccaa aatttggtta caaagaaaat gtaaaatctt ttgttttgga
    27961 ggtgatagct aaagattcta gtttttggaa tttttttagt ggcaatgaag caagaaaaca
    28021 aattgcggta ttagtagata atacggctcc aaaaatcaat atcataagca attcttacca
    28081 aatcgagcaa ggcggtgctg gggcagttgt ttttaaggcc gaagatgcta atttagataa
    28141 ggtgtatata gaaacaaata aaggtaaaat ctttaaagtt acaccttatg taaaagaagg
    28201 gtattatgcg gctttgattg cttgggatgc aagagatgag gaatttcgcg catttgttat
    28261 cgctacggat aaagcgggaa atatttcaaa agaacgtata aggtattatt ttgttaatcg
    28321 taaatatcgt gtttcaaata ttaatttaac ggataaattt ttagatggaa agattgagaa
    28381 tttagccaat caatacgctc caaaagataa taatctcaat cgttatgaaa aatttaagtt
    28441 tgtcaatgaa actttaagaa atagcaatga agaacttatc catgaaatca cttcaaaagt
    28501 acctgaggaa aaaattgata attttgattt gaatttattt ttacctctta aaaatggtat
    28561 gaaagtagcg gattttgctg atcataggta ttattcttat aatgggcaat ttgtgagtga
    28621 ttcttatcat atggggcttg atctagcaag cgtagcacaa gctcctatca taagtaataa
    28681 cgcaggcaag gttgtttttg ctgctgaaaa tggaatttat ggtttaaatt taattgttta
    28741 tcatggtttt ggagtatata gtctttatgg gcactgttct tctaaaaatg ttgatttaga
    28801 tgaaatgatt aataaacaaa gcattatagg taaaacagga acaagtggtt tagccttagg
    28861 cgatcatttg cattttggag ttttggttca aggggttgaa acgcgtcctg aacaatggca
    28921 agataaaaaa tgggtagaaa ataatattta caatgtttta aatgatggta aaaagataat
    28981 tttaggaaaa aattaatgaa acaattaact ttagcaaaaa ctgtcaaagg cgtaggtata
    29041 ggacttcata agggtgaacc catagaaatt actttagagc ctttagaagc aaatagtggt
    29101 atagtatttt ttagaagcga tcttaatgca agctataagg caagtcctga aaatgtgatc
    29161 aatactcaaa tggcaactgt tttaggagat gatcgtggat ttatttctac aatagagcat
    29221 ttaatgagtg cgattaatgc ttatggaatc gataatgtac gcatagtttt aaatgcaaat
    29281 gaagctcctg ttatggatgg atcaagtatt agtttttgta tgatgcttga tgaagcaggg
    29341 gtaaaagaac ttgatgcgcc taaaaaaatt atggtaatta aaaagcctgt agaagtaaga
    29401 gatggtaata aatttgtgcg tttaactcct actaaagaac cccgtattaa ttacacaatt
    29461 aaatttgaca atgctgttat aggtgaacaa agttacaatt ttgaattcag caaaaaaaat
    29521 tatatagaaa acatagcaag ggctagaact tttggttttt taaaagatgt tcaagctctt
    29581 aggagtatga atttagcact aggtggaagt ttagaaaata ctatagtggt agatgaaaat
    29641 cgtattttaa atcctgaggg tttgcgtttc aaagatgagt ttgtaagaca taaaatttta
    29701 gatgcaattg gagatttaac cttacttgga tatcgtgttt ttggggatta tatttcatat
    29761 gctgggagtc atcatttaaa tcatttactt actaaagaag ttttaaaaga taaagatgct
    29821 tatgaaattg taagccttga aaaaacaacc caaaaagctt atgaaaaggt atttgcataa
    29881 aaacctctct tttgcttaat gctttatcta agcctttaat gatcggaatt tatcaagatg
    29941 ataaacttat aaaaacttat aaaagtgaag aaaaagcaag cgaattttta ccaaaaattt
    30001 tagatgaatt gcttaaagaa tatgatttta caagtttaat ctatgctaat ggtccaggtt
    30061 cttatatggg gattaaaatt tcttatgtag gtttgagtac tttaagtata gtaaaaaata
    30121 ttcctttatt tgcggtgagt gcttttgaat taaatggcta taaacccata agtgcaaata
    30181 aaaatttttg ttttgtatat aaggaaggtg aaatttgttt agagcaaaat atcccagcag
    30241 agtttttttt accaaaaaat ttacaagagc ttaaactaaa taatgataat cttccctttt
    30301 attttttaga tgcaatttag gatgaaattt gaaaatttta gttccagcta cgagtgcgaa
    30361 tttagggcca ggttttgatt gtttaggact tagtttaaag ctttttaatg aaactcaaat
    30421 ccaaaaatca ggtgttttta gcattagtat tggaggcgag ggaagtgata atatttttct
    30481 taaaaaaaac aatatatttg taaatatttt ttatgaaatt tatgaaaaac taagcggaaa
    30541 aaaagataat tttcgtttta tttttcaaaa taacattcct ctttcaagag gattaggaag
    30601 ctcttcagct gtgattgttg gagctattgc cagtgcttat tatatgagtg gatttaaggt
    30661 agaaaaagaa cgtattttag atgaagcttt aatttatgaa aaccatccag ataatatcgc
    30721 tccagctact cttggtggtt ttgtgtgttc tttggttgaa aaaaataaag tttatagtat
    30781 caaaaaagag attgataaag atttagctgc cgtggttgtg atcccaaatt tggcaatgag
    30841 cacggaacaa tcacgccaag ctttggccaa aaatttaagt tttaatgatg cggttttcaa
    30901 cctttctcat gcttcatttt taaccgcttg ttttttggag aaaaaatatg aatttttaaa
    30961 atttgcaagt caagataagc tccatgaaat caatcgtatg aaaaacttac ccgaactttt
    31021 tgaagtgcaa aaatttgcct tagaaaataa agctttaatg agcacacttt caggttcggg
    31081 atcgagcttt ttttctttag cttttaaaga tgatgcttta gctttggcaa agaaaataca
    31141 aacaaaattt aaagattttc gtgtgcaata tttagaattt gatgataatg gctttgaaat
    31201 ttgctaaaaa atataaaaaa aagatataat tttgaaaaaa catataccaa ttagaatgtg
    31261 catagtgtgt aaaaaccgct ttgagcaaaa tatgttattt agatttaaag ttgttttagg
    31321 agatattgtg cctaaagcag aacatggaag aagcggatat ttatgtcaaa attgtattga
    31381 gagagaagat aaagtcttac aaaaagcatt ttctaaaata tgtaaaaatt taaatactaa
    31441 aattactcag caaggactta aggagatatt tttaaatggc aaagattaga attcatgaaa
    31501 tcgcaaaaga attaggttat gatagtaagg aaattattga aaaggcaaat gaattaggac
    31561 ttggaattaa aacagcatca aatgctgtag aacctgagat tgcggcagct atttatgagt
    31621 atatacaaac aagagaaatt ccagaagctt ttaagaaaaa tatcaaaact cctacggcaa
    31681 aaaagcctaa aaaagaaaat ataaaagaac aagaaaagct aaatgaatct gaaaaaaaag
    31741 aacctaaaaa agaagaaaag cttaaacaag aagttaaaaa agaagaatta aaaattgaaa
    31801 aagaaaatgc aaaagaggaa gaaaaacaag aaattattga tgctcataag ccacaaagcc
    31861 ttgctagtgc aactttagcc aaaagacgcg gacttgttat tgttaaaaag aaaaaagacg
    31921 aagaagaaat tcaagttaaa aaagaagaag taaaaaattc aaatgatata tctatcaata
    31981 atgaagagcg cttaagttta aaaactatgt tttcaaatgc tgatgagagt ttaaagaaaa
    32041 agaaaaaaga aaaaaaatct tttgttgcga gtaaaaaaga aagtaccgaa aaaatgaatt
    32101 ttttagatga acatgatttt ggtgatattt ctttagatga tgaagatgag gtagtattac
    32161 ctgattttag tgtaaaagaa caagaaaaac cacaaaatat caataaaaaa caacctaatt
    32221 ttataagaca agctgttgga aattctgcgg gttttgggct tgaaggtgga attcaaagaa
    32281 gaagtcgtaa aaaaccatct aaaaagattg aaaaaaagga agtagaagaa gtaggtagcg
    32341 ttgctatttc taaagaaatt cgtgtgtatg aattcgctga taagatagga aaaagcacta
    32401 gtgaagtgat ttcaaaactt ttcatgcttg gaatgatgac aacaaaaaat gatttcttag
    32461 atgaagatgc gattgaaatt ttggctgctg aatttggtat agagatcaat atcattaacg
    32521 aggctgatga gtttgattat gtaaaagact atgaagaaga gactgatgaa aaagatttag
    32581 tgactagagc acctgtgatt accatcatgg ggcatgttga tcatggtaaa acttctttgt
    32641 tagattatat tagaaaatca cgcgttgcaa gtggtgaagc agggggtatt actcagcacg
    32701 tgggtgctta tatggtagaa aaaaatggac gtaaaattac ttttattgat actccaggtc
    32761 acgaagcttt tactgctatg cgtgcaaggg gtgcaagtat cactgatatt gtaatcatcg
    32821 ttgtagctgc agatgatgga gtaaaaccac aaactaaaga agcgataaat catgctaagg
    32881 cagcaggtgt gcctattatt atcgctatta acaaaatgga taaagaagcg gcaaatcctg
    32941 atatggtaaa aactcaactc gcagaaatgg aaattatgcc agtagaatgg ggcggatctt
    33001 atgaatttgc aggagtttcg gctaaaacag gaatggggat tgaagattta cttgaaattg
    33061 tgcttttaca agctgatatt ttagaactta aagccaatcc aaaaagtttt gctaaagcaa
    33121 gcattataga aagttctgtg caaaaagggc gtggcgcggt agctactatc atcgtgcaaa
    33181 atggaacact tactgtagga agtactgtgg ttgcaggcga ggcttatgga aaagtgcgtg
    33241 cgatgagcga tgatcaaggt aaagccttaa aagaaatcaa accaggtgaa tgtggggtta
    33301 tcgtaggact tagtgaagta gcagatgcag gtgaaatttt aatcgcagta aaaacagata
    33361 aagaagcaag agaatacgct aataaacgcc acgaatacaa ccgccaaaaa gaacttagca
    33421 aatccactaa agttagcatt gatgagcttg gagctaagat caaagaaggc aatctaaaag
    33481 ccttgcctgt tattttaaaa gctgatgtac aaggatcttt agaagcctta aaagcaagtt
    33541 tagaaaaact tagaaatgat gagattaaag tgaatatcat tcatagcggg gtaggaggga
    33601 tcacacaaag tgatatagag cttgcaagtg cgagtgaaaa ctctatagta ctaggtttta
    33661 acatacgccc aacaggggaa gttaaagagc gtgctaagga taaaggcgta gaaattaaaa
    33721 cctataatgt gatttataat cttttagatg atgtaaaagc cttgcttggt ggtatgatga
    33781 gtccgattat ttctgaagag caattaggac aagcagagat tagacaagtg atcaatgtgc
    33841 caaaaatcgg acaaatcgca ggttgtatgg taactgaagg ggtgattaac cgtggagcta
    33901 aaattcgcct tatccgtgat ggagttgtgg tttatgaagg aaatgtaagc tcgcttaaac
    33961 gttttaaaga tgatgctaaa gaagtggcaa aaggctatga gtgtggcgta ggtatagaag
    34021 ggtgtgatga tatgagagtg ggtgattata tagaaagcta taaagaagta gaggaacaag
    34081 caagcctatg aacccaagtg agattaaaaa actacgcact gaaagtatct taaaagagct
    34141 aatccctgaa gctttagcaa atttagatga tgaaaatttg aaaaatttgt gtgtagtgga
    34201 tgtagagtgt aaaaaaggca gatatgatgc ttttgtgtat cttgataaga tgttttttaa
    34261 tgttcatgag caagaaaaaa ttttatcttc tttaaaaaag gcaagtagag ctttgcaaaa
    34321 ttactgcatg agtgagcagg gttggtatag gtgtccgaat tttcatttta aatttgatga
    34381 taggcttgag tatcaaaacc atatggatgc actttttgaa aaaataaaaa aggataaaaa
    34441 tgaatcttga agccctttgc aaagaagcag agcttagctt ttatgatgat gagctagtaa
    34501 gtgaaaatgg cagaaaaatt tatagaattt atgtgcaaaa agaaggtggg gtaaatcttg
    34561 atgattgtgc aaggcttagt gaaattttat cgcctatttt tgatgtagag ccacctgtaa
    34621 atggggagta ttttttagaa gtatcttcac caggacttga aagaaaactt agcaagatag
    34681 aacactttgc taaaagtata ggtgaacttg tgaagatcac aaccaatgaa aaagaaaaat
    34741 tcgaagcaaa aatcattgct gtagatgatg aaaatatcac tttagaaaat ttagaaaata
    34801 aagaaaaaac tactataaat tttaatgata taaaaaaagc tagaaccttt gtggagtggt
    34861 aagaaatcta aatatgattt aaaaatagca taatttaagg atttggtaat gtggaattta
    34921 gatgaaaaaa aattacaaga aatgcttgat ggctttttaa attttcaaga agtatggact
    34981 ttagaaaaag ttaaaaatat gactcttgaa gaatatacta acattaaaaa agataatcca
    35041 aatagagatg attttacttt ttggatagaa agtaaattgg ataatctagg aagtatttgg
    35101 ggtggctcag cttttaaatt tggtatatat agaagaaatg atgaaagtca gaaagaatct
    35161 tctagcggta gattatatag tcaaaattat gcttggattg ctaaatatgg caataatgaa
    35221 aatgaagcat ttaataatat caaagaaaaa atcatacaaa taatacaagc aagtcaagat
    35281 aataatttaa aaactataga aaaaatagat tttggggatg caattaaatg gaaaatagct
    35341 tttcattatc aagatgtaaa gaatataaaa
//
LOCUS       DAZBIH010000008        29849 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.008, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000008 DAZBIH010000000
VERSION     DAZBIH010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29849
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.008"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..612)
                     /locus_tag="ACHFOB_000290"
     CDS             complement(<1..612)
                     /locus_tag="ACHFOB_000290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0140110 - transcription regulator activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HFN5799126.1"
                     /translation="MDEGQKQQFIKLTYFLGEVLGEQYEIVFHVITEDGAYIAAIANN
                     HISGRSLDSPLTAFASELMQNKKYLEKDFLCDYKALVGKSKLIRGSTFFIKNHDKLVG
                     ILCINHDTSIMRDLICKMIDLEKIGDMGDILGNISFSQNDSSIETLSHSIEDILVQSV
                     DSSYLNSDYQLSIAQKEEIAEKLYEKGIFNIKGAVPIVAKFLKI"
     gene            780..1142
                     /locus_tag="ACHFOB_000291"
     CDS             780..1142
                     /locus_tag="ACHFOB_000291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFN5799127.1"
                     /translation="MSNYPKAIGPYSAYREANGLLFISGQLPINPASGEIESSDIKEQ
                     TKQSLKNIGAILEENGISYDKVIKTTCFLADINDFVAFNEIYAEFFKAPYPARSAFAV
                     KDLPKKAKVEIEIIAQKG"
     gene            1146..2585
                     /gene="dcuC"
                     /locus_tag="ACHFOB_000292"
     CDS             1146..2585
                     /gene="dcuC"
                     /locus_tag="ACHFOB_000292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020247107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C4-dicarboxylate transporter DcuC"
                     /protein_id="HFN5799128.1"
                     /translation="MLGIVFSLFSVFLLVFMLYKKINAHMALLLSGLLLLSLAAIFGL
                     SPHIVAKGSLNLGFFDIFQVFNQTMSSTLAGLGLTLMTIAGFSAYMDHVGASYALFKV
                     FEKPLKAVKSPYVLLIVAYFIVQLLVLFIPSHAGLALLLMVTMYPILVRSGVSKLSAL
                     SVIAICQYIDHGPGSGNVIMASKVAEVDPAIYFFHYQLPTTLPIIIAVGIAIYLCNKF
                     FDKKDNFVFNAQEIEKELNENEGKEKELKKPPRIYAILPIIPLVLILGFSSVLDSILV
                     LMGISSAEEVKAAASTAIKMNVPVAMVISTFVAIIFEMIRYKSIVETLNSIMIFFKGM
                     GHLFVITVSLIVCGQVFASGLLSVGFVDTLIEFCKNAGFGVLAIIIAVSILLAVCAFL
                     MGSGNAAFFSFAPLIPNIAKHFGVETITMIAPIQIMTGFGRCVSPIAPAILAISAIAK
                     VSPFAVVKRTAIPMLVAAIVNVIMTYIYL"
     gene            2598..3761
                     /locus_tag="ACHFOB_000293"
     CDS             2598..3761
                     /locus_tag="ACHFOB_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aspartate aminotransferase family
                     protein"
                     /protein_id="HFN5799129.1"
                     /translation="MNSKTKLIHCGRGDQGAEVRSVNPTLMRASTILFKDHATWQKYR
                     ELRKTDRVLSYGARGTTTNFELEKLICTLEGGYRAQLFPTGLAALAMVLLNYASKDAH
                     FLITDAIYGPVRTICELFLEKMGVEIDFLKADASDVEEKIKPNTKLILCESPGSILYE
                     IIDLPKLCKIAHAHNIPVAIDNTYSSGYFLNPLELGVDISVIAATKYLSGHSDVTMGI
                     VVINEKEWKNFDKLPEALGFTTSPDDAYLVLRGMRTLDVRMKAHEKSADEIVEFLQSR
                     KEIKTIFYPKLKSHPNHEIFMRDHKGANGMITIEFAEGYSKDDAIKFVDKLEYFSIGA
                     SWGGYESLATVTTPPRTATDWSARGPFVRFHIGLEDTKDLIADLTQAFDSIKK"
     gene            3771..5138
                     /gene="purB"
                     /locus_tag="ACHFOB_000294"
     CDS             3771..5138
                     /gene="purB"
                     /locus_tag="ACHFOB_000294"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN5799130.1"
                     /translation="MTGISVFDHRLLADSWSTQEMRAIFCEQNRIQKWLDVEAALAKA
                     QAKLKIIPKKAADEIAKKAHYKFMDMDFIFAEFKKTKHPLVPTVRGLEKACDNNLGEY
                     VHFGVTTQDIIDTGLVLQFKEAMTLIKSELKAIAKALAKLAKTHKNTAMMGRTLALQA
                     LPITFGHKVAIWLSELERHFERILELEKRLYVGSIVGAVGTKASLSDECNEVEKLTLE
                     NLGLDVPNISWQPARDRFIELGFVLGNINTTFNKIAHEILILSHNEIDEVAEPFGKGQ
                     VGSSTMPHKRNPAVSENAVTVSNAFKANLAILSDIERHEHERDGQVWKMEWKLLPEMF
                     LMLSVVLANMKFALSDLEVKKDKMLKNLNTLNGFVLAERVMFALSDHYGKQHAHEIVY
                     ENAMLGIEKQKTFKEVLLADKRVSKVLKEKEIDALLDATSYVGYAPKLVDEFLAKIKN
                     SAILK"
     gene            5147..6487
                     /locus_tag="ACHFOB_000295"
     CDS             5147..6487
                     /locus_tag="ACHFOB_000295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002843169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmgE/PrpD family protein"
                     /protein_id="HFN5799131.1"
                     /translation="MFYSEILADFIFNLKYENIPNAVVQRAKELMLDSLGTAIAASKE
                     ECVLNAFKAFENLSTEKNTPIWINDQKLDPIYAAMLDGIASHALDFDDTHTEAILHAS
                     AILTPLCLSYGFHVSKDAKKIIKAFIIGWEIAARVGIASKGTFHKRGFHTTAIAGIFG
                     SVSASAILLDLNKEQIINALGLAGSFASGVNEFLSNGSNSKVLHIANAIKNGIMVAHF
                     AKNNMSGPLSIFEGRDNIFKCFGIEEECDKTELNKALGEIWQTMQVSIKPYPSCHFAH
                     GLIDCAIALKNDGLKADEIKSIHCFVDEVPISFICDPLEAKYTPNSAYEAKFSMPFLM
                     ALGFFDGKITLNSYENLKREEVLEFAKKISYEKRKSQGFPKYFPGHLEASLQDGRIIQ
                     KDVFINKGNFDNPLSFEELKAKFLANAQIYLDNTKANKILDQIINLENLNHFSF"
     gene            6569..6793
                     /locus_tag="ACHFOB_000296"
     CDS             6569..6793
                     /locus_tag="ACHFOB_000296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HFN5799132.1"
                     /translation="MTLNELKDGQKAIIVNLNAHKELKNRLLSFGFIKNKNLKKIHSS
                     LKNATIMVELDTSCVILRSDEAKTIEVNLI"
     gene            6790..8631
                     /gene="feoB"
                     /locus_tag="ACHFOB_000297"
     CDS             6790..8631
                     /gene="feoB"
                     /locus_tag="ACHFOB_000297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0015093 - ferrous iron transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HFN5799133.1"
                     /translation="MKKIKIALVGQPNVGKSLLINALCKANMKVGNFSGVTIEKASAK
                     TFYKNYEFEVIDLPGTYSLDGYSEEEKITRHFLNQNDYDVIVNVLDATNLERNLILSA
                     ELLSLNKKMLLALNMCDEAKKEGIELDTSILSQEFQSQVVEISAKTKENLELLLQKII
                     ILFESKFIPRSQFYTPLCEKSPEKEDLLYFINELSKKIITHKKEERNLTKKIDALLIH
                     KFFGLPIFLFLMWLLFQLTFSLGQIPMDYIESGFNTLGEFVKNNISNTFIASALADGI
                     IAGVGAVILFLPNIMILFLGIALLETTGYMSRVAFLLDGILHKFGLHGKSFIPLITGF
                     GCSVPAFMATRTLKNKRDRLLTLFVINFMSCGARLPVYVLFIGAFFPSEKAGNYLFGI
                     YILGAILGLCAAKFLRMTAFRGLDEPFVMEMPKYRMPNWYLVWFMVYNKAKMYLKKAG
                     TFILLASLLIWFASNFPKSEENLNDFNAQERAIEQSYLGQFGKSIEPIFQPLELDWKL
                     SVSLISGLAAKEVMISTMGVLYSLGKDVDETNNDLKGIIAKNIPIPSAVAFILFVMIY
                     NPCFAATIVFSKESGKLKYTLFLFLFTCTSAYIVAFIGLHIAKILLN"
     gene            complement(8628..10121)
                     /locus_tag="ACHFOB_000298"
     CDS             complement(8628..10121)
                     /locus_tag="ACHFOB_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydrogenase small subunit"
                     /protein_id="HFN5799134.1"
                     /translation="MAKLSNEELKNILEDRIKKLENSTLKEDKVINEESVKILARHLS
                     LGNEIPALAQRFFQIAPKTKLVWLHLCECTGCSESLLRSELPSFDELIFDFFSLEYHE
                     TLMAANGTKAEELLEHVLEEDFILAVEGGVAAIDTFFLTIGAQGESGYEILEKLAAKA
                     KAIFAVGTCSSYGGIQAAYPNPSKTCGISEVLSQKVVNIPGCPPSDINIIATLSFFAL
                     FGVLPELDEQNRPVWAYGKCLHDMCERKAKFESGIFAEHFDDEAAKNGACLFKIGCKG
                     PYTYNNCPKVKFNAKTSWPVAAGHGCIACSEKNFWDEFGNYEKPMANIFSYAKLCNEE
                     LKQEFFLEEQIKILEQIDFEFESNIKLILQNIAKNKLGALLVENYKKSFEKNYTFIEQ
                     NFDENPMPSKDFWKYLEISFILVKGEFLKDKNDFLIAAKNYAFKHASPYDFKLNMNAE
                     KPKLDVSKSFRMTLIYLCGGLDFEGIAYSILKAFEDNITKISSLKAS"
     gene            complement(10125..10949)
                     /gene="fabI"
                     /locus_tag="ACHFOB_000299"
     CDS             complement(10125..10949)
                     /gene="fabI"
                     /locus_tag="ACHFOB_000299"
                     /EC_number="1.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004318 - enoyl-[acyl-carrier-protein]
                     reductase (NADH) activity [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HFN5799135.1"
                     /translation="MIMKGKKGLIVGVANNKSIAYGIAKACFDQGAELAFTFLNDALK
                     KRVEPIAQEFNSNFVYELDVNNNEHLDSIAEKIKKDLGEIDFVVHAVAFAPKEALENS
                     FLETSKEAFDIAMQTSVYSLLSLTRAVLPILKDKGSILTLSYLGGVKYVPHYNVMGVA
                     KAALESSVRYLARDLGVKGIRVNAISAGPIKTLAASGIGDFRMILKYNEINSPLKRNV
                     SIEDVGNSAMYLLSDLANGVTGEIHYVDAGYNIMGMGDVEKNEEGQTVLCWDNQKG"
     gene            complement(10953..11624)
                     /gene="tpiA"
                     /locus_tag="ACHFOB_000300"
     CDS             complement(10953..11624)
                     /gene="tpiA"
                     /locus_tag="ACHFOB_000300"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HFN5799136.1"
                     /translation="MIFAANLKCNHTRASFKIYAEILNKTIGVKCDDIIVFPPSVAFL
                     EKENNFIQGAQNFYPCVNGAFTGELGKEHLDEFGIKCVLIGHSERRALGDEEFIKAKF
                     DFAKEHGYKIVFCIGENLDTKNSGKTLEFLKKQLEIIDLNYEKLIIAYEPIYSIGTGV
                     SAQSTDIAKVLEFLASLTKAPLLYGGSVNENNIKEILSVNHCGGVLIGSAALKVENFI
                     KLIKG"
     gene            complement(11621..12823)
                     /gene="pgk"
                     /locus_tag="ACHFOB_000301"
     CDS             complement(11621..12823)
                     /gene="pgk"
                     /locus_tag="ACHFOB_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HFN5799137.1"
                     /translation="MSDIISIKDIDLAKKKVFIRCDFNVPQDDFLNITDDRRIRSAIP
                     TIRYCLDNGCSVILASHLGRPKEISSKYSLEPVAKRLARLLDKEIVMAKDVIGEDAKT
                     KAMNLKVGEILLLENLRFEKGETKNDENLAKELASMVQVYINDAFGVCHRAHSSVEAI
                     TKFFDEKHKGAGFLLQKEIDFASNLIKHPARPFVAVVGGSKVSGKLQALTNLLPKVDK
                     LIIGGGMAFTFLKALGYDIGNSLLEEELLEEANKILTKGKNLGVKIYLPVDVVAAPAC
                     SQDVPMKFVPAQEIPNGWMGLDIGPASVRLFKEVISDAQTIWWNGPMGVFEIDKFSKG
                     SIKMSHYISEGHATSVVGGGDTADVVARAGDADEMTFISTGGGASLELIEGKELPGVK
                     ALRSKENE"
     gene            complement(12826..13824)
                     /gene="gap"
                     /locus_tag="ACHFOB_000302"
     CDS             complement(12826..13824)
                     /gene="gap"
                     /locus_tag="ACHFOB_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0006006 - glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HFN5799138.1"
                     /translation="MAVKVAINGFGRIGRCVARIILERNDIELVAINDTTDIELTKYL
                     FKYDTVHGEFKGSVDSEGDDLVVNGKKIKVFKSRNVKDLDFAKHGAQIVLECTGAHLT
                     MAKCQEFIDMGVQKVIMSAPAKDDTPTYVLGVNSELYKGESIISNASCTTNCLGPVCR
                     VLQDNFGIEKGLMTTIHAYTNGQSIIDAKAKDKRRSRAAAQNIIPTSTGAAKAMKLVM
                     PELNGKLHGQSMRVPVIDVSSVDLTAQLSRKVSKDEINEAFRKAAATNLKGILMVDDD
                     ERVSSDFITCSYGAIVASDLTQVIADDFIKVIAWYDNEWGYSSRLVDMAVYIANKA"
     gene            13884..14429
                     /gene="nadD"
                     /locus_tag="ACHFOB_000303"
     CDS             13884..14429
                     /gene="nadD"
                     /locus_tag="ACHFOB_000303"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_function: GO:0004515 - nicotinate-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate (nicotinamide) nucleotide
                     adenylyltransferase"
                     /protein_id="HFN5799139.1"
                     /translation="MKIALFGGSFDPPHNGHNSVVLEALEKLDIDKLIIMPTYINPFK
                     QSFSADEKQRFLWVKKLWGHLPKVEICDFEIRQKRPVPSIESVKYLYKLYNPSKFYLL
                     IGADHLEKLHLWHDFEKLNSLVEFVIANRNDIGIPKNFKDLKTNKKIASSFIRDTLNT
                     NEVCEEIKDEVKKYYEKLQKN"
     gene            14457..14783
                     /gene="rsfS"
                     /locus_tag="ACHFOB_000304"
     CDS             14457..14783
                     /gene="rsfS"
                     /locus_tag="ACHFOB_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0017148 - negative regulation of
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HFN5799140.1"
                     /translation="MQERIDLIVKILDEKKAENIKTIDMSEQEYFVKYVIIAATLGER
                     HALSLIDELKTRLKAKGEEFLNIDSSEEWSVIDLGDILIHLLTPEHRGIYNIEELLEN
                     LKKGRV"
     gene            complement(14842..15192)
                     /locus_tag="ACHFOB_000305"
     CDS             complement(14842..15192)
                     /locus_tag="ACHFOB_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1090 family protein"
                     /protein_id="HFN5799141.1"
                     /translation="MKKILILLTLCAFAFGASECDRKIDRINKEISFSKAHNDTARTL
                     SLELALKQVQNDCAKDPMFYDKKLEAKKLKEQEVEKIEKELDALKEQKDYMSKAEYKA
                     KKEALKEQKEKIKK"
     gene            complement(15239..16609)
                     /gene="pgmL"
                     /locus_tag="ACHFOB_000306"
     CDS             complement(15239..16609)
                     /gene="pgmL"
                     /locus_tag="ACHFOB_000306"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase PgmL"
                     /protein_id="HFN5799142.1"
                     /translation="MLDVIFREYDIRGLYGKELNEKSVKAIGFCLGQTMLNKGCKNVS
                     VGYDARYSANELFNYLVSGLNKAGIKIYDIGLVPTPLGYFSLYEGLKFDANVMITGSH
                     NPKDYNGFKITINKESFFGVELKEFSKEVYKYLDDDIEENLEVEKYDILNLYVKFMCE
                     QFSFLKDFNYKFGVDCTNGAAGVVIEPLIKALNLKAHVMFAEPDGQFPNHAPDPTEEE
                     NLSAIREFLNQNQDYSLAFAFDGDADRMVALSKTHVFCGDELCYLFAKDIPNPRILGE
                     VKCSKNLFDEVAKFGTIFMGKTGHSNIKKMMKEKDIDLAAEVSGHIFFKHRYFGYDDG
                     IYAFLRALELVYKGFDLESMIKALPKLYTTPEIKIPVNEEEKFKLVEEFQKEIEKGAL
                     KGVKSLCEIDGARIDFGDGWALLRASNTSPYLITRFEATSLERAKELESMVFTLFNDI
                     KARFKN"
     gene            16731..17267
                     /gene="fliL"
                     /locus_tag="ACHFOB_000307"
     CDS             16731..17267
                     /gene="fliL"
                     /locus_tag="ACHFOB_000307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body-associated protein FliL"
                     /protein_id="HFN5799143.1"
                     /translation="MDEELENEETKKKKGGSLVIIIVILLFVLLLSIMGVIAWLISSS
                     SSDESEVKEAPKEEAKADKPKVSAPTQRGSDFANIGPMYPLDPFTLNLLSDSGSRYVK
                     CTIELEQNSELLKPELDKKVPVIRDIIIRTLTAKTFEEVSTQKGKERLKDELVGKINE
                     ILTDGFIKNVYFTDFVVS"
     gene            17267..17614
                     /gene="acpS"
                     /locus_tag="ACHFOB_000308"
     CDS             17267..17614
                     /gene="acpS"
                     /locus_tag="ACHFOB_000308"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008897 - holo-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HFN5799144.1"
                     /translation="MRVGCDIIAISRIEKIHSRHGKNFLDKFLSPKEQILIKNPATLA
                     GLWAAKEAASKALGVGICELCSFFDIEISKDEKNAPKLKYSQKITKDFNITQTSLSIS
                     HDNGFAIAIVAIV"
     gene            complement(17615..18034)
                     /locus_tag="ACHFOB_000309"
     CDS             complement(17615..18034)
                     /locus_tag="ACHFOB_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799145.1"
                     /translation="MKRVRTKIRANFRRRVKRTLKGSLKEKLAGTILLCAIVPLAVLG
                     YLFIVIIGTFFNTARARQGVRALDHFVNASLFNGYAWESVSSHAWRERNRKKWARIVI
                     KITDFFQKDHCKRANKREQPVVDFILSRNLDKQTIGK"
     gene            complement(18031..19392)
                     /locus_tag="ACHFOB_000310"
     CDS             complement(18031..19392)
                     /locus_tag="ACHFOB_000310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA];
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome P450"
                     /protein_id="HFN5799146.1"
                     /translation="MSECPFFPKPYKNKASTLLTFLLKRRSWLDGLYERSYKMQTGYV
                     KMPNFDLYVINDTKEVKRMMVDEVREFPKSAFLHELLSPLLGESIFTTNGEVWKKQRE
                     LLRPSFEMTRINKVFNLMSEAVADMMDRFSKYPNHAVIEVDEAMTFITADVIFRTIMS
                     SKLNEEKGKKILNAFVTFQEQSVHTAMRRMFRFPKWLSYVLGDRKRAKAGDVIRQVLS
                     DIIKPRYDMADNAEFEDILGSLLLVVDADTNKRFSFEEILDQVAMLFLAGHETTASSL
                     TWTLYLLSLYPKEQEKAYEEITQVLQGGAIEISHLRQFKYLINIFKESLRLYPPVGFF
                     AREAKKDTQVRDKLIKKGSGVVIAPWLIHRHEEFWTNPHGFNPSRFEGEYKKDAYLPF
                     GVGERICIGQGFAMQEAILILANILKTYKLELEEGFVPDVVGRLTVRSANGMRIKFSK
                     REL"
     gene            complement(19389..20510)
                     /locus_tag="ACHFOB_000311"
     CDS             complement(19389..20510)
                     /locus_tag="ACHFOB_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF829 domain-containing protein"
                     /protein_id="HFN5799147.1"
                     /translation="MDREVFYIAGYDPKSYRFYYDLFKKNLKDYSHTFNIKADLSKIE
                     KNEQFPFFKISCEGVQTKYHFLTWNDIVKKNWSENYKDALADCYSFFRIYTITGLFIK
                     FGKESIYQLITGYYPFFYVLFSLLFSLVLAFGSFAFLQNYMHFSLAIIIGCFLGFLLN
                     HFLFKLGKKLAVFWIARICAFCATWQDKKTGTMQERIKLFANTIVDKLKQNENKQDYE
                     LVLVAHSVGTIVCIEVLECILRQNLDLSLLHKLKILTLGECIPLVSYQKKADEFRKKL
                     EFVSRFDLKWYDYTSIIDGACFPQVDFFRTSGVNAKFTPPFLSAKFHTLYEKHEYKKI
                     KRDKNKAHFLYLYSISVKGDYDFFSFIIMPKFLEEKVKI"
     gene            complement(20582..21766)
                     /gene="kpsS"
                     /locus_tag="ACHFOB_000312"
     CDS             complement(20582..21766)
                     /gene="kpsS"
                     /locus_tag="ACHFOB_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide modification protein
                     KpsS"
                     /protein_id="HFN5799148.1"
                     /translation="MRFNTKIKKEFSGKNVLLLQGPVGNFFHHLAIRMEKKQTKVFKL
                     NFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKIDAILMYNDCRIIHAKAIKVAKE
                     LGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
                     MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIY
                     NLEKKYFLAILQVYSDTQIKYHYKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRG
                     YKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINSTVGLSAILEGCPTK
                     VCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFL
                     DK"
     gene            complement(21763..23832)
                     /gene="kpsC"
                     /locus_tag="ACHFOB_000313"
     CDS             complement(21763..23832)
                     /gene="kpsC"
                     /locus_tag="ACHFOB_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsular polysaccharide biosynthesis protein"
                     /protein_id="HFN5799149.1"
                     /translation="MKHYSISKKLIANARNFYTISLYKKNLKIKKDDLFFGWGRKKSG
                     LKAMNLAKKYKAKFILLEDGFIRSLNLGVENSPSFSMVKDDIGIYYDATMPSKLENLL
                     NTCEFKDEEIKQAKKAIELIKKYKISKYNNNLDIPDDYFQKDEKRVLIITQTANDASL
                     EFGLAKGFKTIDMIKDAIKENPKSKIYIKIHPDVLSGKKQSDLDINSLPKECILITEN
                     FNPIALLEFFDKVYTKTSGMGFEALMQGCECVCYGMPFYAGWGLTKDKLECKRRMQKR
                     SLEEVFYAAYILYSEYFNPYLNQKSNIFDTIQTLAKYKDIEKANSNRLLMLGFTLWKR
                     HFIKPFFKAKNNEIIFLNSLKSLARYKLKEDDKFFIWGKRIDYNTLKTTLIKKAQDEN
                     LLHFTPKISLVEDGFIRSISLGSDLTRPFSLIVDDKGLYIDPNKASKLEELLQNEIFD
                     ENILNRAKNIIKILLENRFSKYNGLKHEDLKINAKIGQKIILIPAQVEDDASMILGGF
                     GLSTLDLLKEVRSKNQDAYIIFKPHPDVLSGNRVGLKDETRILEFCDEIVKDCSIDSA
                     IKIADEIHTITSTSGFDALLRAKKVFTYGMPFYAGWGLTKDKHKCKRRTRKLSLEELV
                     AGALITYPRYINPKTKTLCEIEVCLDIMLNLQKAYFSKKYIKLAIDFKTFMLRKIRRF
                     YEFLAKK"
     gene            complement(23829..24341)
                     /gene="cysC"
                     /locus_tag="ACHFOB_000314"
     CDS             complement(23829..24341)
                     /gene="cysC"
                     /locus_tag="ACHFOB_000314"
                     /EC_number="2.7.1.224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine diphosphoramidate kinase"
                     /protein_id="HFN5799150.1"
                     /translation="MKNNPYIIWLTGLAGSGKTTIGQALYEKLKLKYKNLIYLDGDEL
                     REILGHYAYDKQGRIDMALKRAKFAKFLNDQGMIVIVTTISMFNEIYDYNRKQLKNYY
                     EIYIECDMHELMQRDQKGLYTKALNKEIDNVVGVDIEFDKPEADLVIDNSCRNNLEEK
                     VELIIKKLGL"
     gene            complement(24331..25092)
                     /locus_tag="ACHFOB_000315"
     CDS             complement(24331..25092)
                     /locus_tag="ACHFOB_000315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP:phosphoglutamine cytidylyltransferase"
                     /protein_id="HFN5799151.1"
                     /translation="MNAIILAAGFGSRLMPLTKDQPKCMVEYKNKKIIDYEIEALKSA
                     GINEIAVVGGYLNDVLKNYLNKYDIEHFFINSKYDKTNMVYTFFCAKDFMLKCIEEKQ
                     DLIISYADIIYFQDCVQKLINAKEELAIVVDKSWRKLWSKRFANPLEDAETLKMTNGY
                     IIELGKKANAHDEIEAQYIGLFKFSYQFLSEVIAFYEMLDRDILYDNKNFENMYMTSF
                     LQALIEKYNNAKAVEIDGNWCEIDFMSDLEVQIEK"
     gene            complement(25094..25696)
                     /locus_tag="ACHFOB_000316"
     CDS             complement(25094..25696)
                     /locus_tag="ACHFOB_000316"
                     /EC_number="3.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016811 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds, in linear amides
                     [Evidence IEA];
                     GO_process: GO:0045227 - capsule polysaccharide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-CDP-amidate hydrolase"
                     /protein_id="HFN5799152.1"
                     /translation="MFIGITQRLICNDSYHEERECLALDWGKLFNKDLFKNFTPLPLS
                     YEIDFSYYKHLIKAVILSGGNDLSFYSPNVLSKKRDLYEKQVIEICLEEKIPLLGICR
                     GAQMIAHYFNSHMSPCENHIGKHEVFFSKEKFISNSFHNFAIEKLGEDLVELCLAEDN
                     TIEAFKHKYENIFGIMWHIERENGLNNIQILREWFSLIKE"
     gene            complement(25687..28026)
                     /locus_tag="ACHFOB_000317"
     CDS             complement(25687..28026)
                     /locus_tag="ACHFOB_000317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PEP-utilizing enzyme"
                     /protein_id="HFN5799153.1"
                     /translation="MAELNFKTKAQNLKNLQTKLKKAKVLPLVLTSLEELISNEDKVL
                     QDIQTLKANRLIIRSSSLSEDSMKNSNAGAFLSLANIEADSKDELLKALYEVANSMPS
                     KSDEILVQPMLENITLCGVGFSVDKDNFSPYFCLQYDENGSNSSITDGSSKSAKTYYH
                     YRDYLEFKDIRLQKIIELIKELEVLYDCCFLDVEFAFAIQDDKEELFCLQVRPLVMHE
                     KNNLFHSLPKEALYRFYKRFESLKESRSRVLGDKAIFGVMPDWNPAEIIGLRPKRLAF
                     SLYKEIITDNIWAYQRDNYGYRDLRSHPLIHSFLGIPYVDVRLSFNSFIPKKLDENIA
                     QKLVNFYLDKLNKNHELHDKIEFNIVYSCYDFNSSKKLEELLNHGFNENEIKRLEFSL
                     LELTNKIINPRSGFYLKDIQKAYKLKERYDGIINSNFSLIDKIYWLIEECKRYGTLPF
                     AGVARAAFVAMQLLNSLVEIDFITKEEKDDFLNSLNTVSKNLSKQTNHLNFHNKDQFL
                     KDFGHLRAGTYNILSPRYDENFDLYFDINQKDHKIYLQDKALILSEEKTKALNALLKE
                     HGLEISACEFFDFLKQAIEGRELVKFEFTRLLSKAIVYIEELGKYYGIEKEDLAHLDI
                     KSILNLYSSLYSINPKEQFLEEINRNKKEYELTQAIKLPSLLCNADEIFSFYNHSIIP
                     NFITQKSITAFTAKENDKDLEGKIVLIYAADPGYDYLFTKNIAGLITCYGGANSHMAI
                     RASELGMPAVIGVGEENFEKYLKAKKINIECESEQIFCL"
     gene            complement(28041..28802)
                     /locus_tag="ACHFOB_000318"
     CDS             complement(28041..28802)
                     /locus_tag="ACHFOB_000318"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN5799154.1"
                     /translation="MQKLVEQVWDYTKHAKFYSYRPNYAPKTIDMLISLVGKKDIKVA
                     DIGAGTGNLSIMLLERGCKVVSVEPNDAMREIGIERTKGQKIDWVRATGLNSTLQNSE
                     FDWVTFGSSFNVMDRNEALEEAYRLLKPEGYFSCMWNHRDLNDPVQKIAEDTIVEFVP
                     NYTRGTRREDQRPIIESRKGLFDNIVYIEEDFYFHQSIENYINAWKSVKNPYWDLETD
                     EGNELFNKISDKISQRLPKEFSIKYTTRCWSAKKI"
     gene            complement(28855..29627)
                     /locus_tag="ACHFOB_000319"
                     /pseudo
     CDS             complement(28855..29627)
                     /locus_tag="ACHFOB_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344803.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
     gene            complement(29679..>29849)
                     /locus_tag="ACHFOB_000320"
     CDS             complement(29679..>29849)
                     /locus_tag="ACHFOB_000320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
                     /protein_id="HFN5799155.1"
                     /translation="EFKNNKLIRNKVFNMLHKELKFIKQYRPDIVASWKYYQEFEQMC
                     KELDGDIQEKDL"
BASE COUNT        10153 a         5147 c         4028 g        10521 t
ORIGIN      
        1 aatttttaaa aattttgcta cgataggaac cgctcctttt atattaaaaa tacctttttc
       61 atatagcttt tcagcaattt cttctttttg agcaatgctt aattgataat cagaatttaa
      121 ataactagaa tctacacttt gaactaaaat atcctctatc gagtgactta atgtttctat
      181 gcttgaatca ttttgagaaa aactaatatt tcctaaaata tcacccatat ctccaatttt
      241 ttctaaatca atcatcttgc atattaaatc tctcataatg ctagtatcat gattgataca
      301 caaaatacct actaatttgt catgattttt aataaaaaaa gtagatcctc taattaattt
      361 tgattttcca acaagagcct tataatcaca taaaaaatct ttttctaaat attttttatt
      421 ttgcataagc tcacttgcaa aagcagtcaa gggagaatct aaacttctcc cactaatgtg
      481 attgttagca attgccgcaa tataggcccc atcttcagta attacatgaa aaactatctc
      541 atattgctca cctaaaactt cccctaaaaa atatgtcaac tttataaatt gttgtttttg
      601 tccctcatcc ataaaactgc cttcaataaa aaattaatat aatattaaat tctactcttt
      661 atactttaaa acatttctta aaaataaaat tttattatta tgataataaa ctattgacaa
      721 attattattg tagtgataaa atgcattctg tttaatctat atttaacaaa ggagaattca
      781 tgtcaaacta tccaaaggcc attggtccat actcagctta tagggaagca aatggacttt
      841 tatttatatc aggacaactt cctatcaacc ctgcttcagg agaaatagaa agctctgata
      901 tcaaagaaca aaccaaacaa tctttaaaaa atatcggtgc tatcttagaa gaaaatggta
      961 tcagttatga taaagtgatt aaaaccactt gctttttagc tgatattaat gattttgtag
     1021 cattcaatga aatttatgct gaatttttta aagctcctta tccagcaaga agtgcttttg
     1081 cagtaaaaga tctgccaaaa aaagctaaag tagagataga gatcatcgct caaaaaggat
     1141 aaaacatgct aggtattgtt ttttctttat ttagtgtttt tttacttgtt tttatgcttt
     1201 ataaaaaaat caatgctcac atggcattgc ttttaagtgg tttactttta ctttccttag
     1261 ctgctatttt tggactttct ccacacattg tcgctaaagg ttctttaaat ttaggttttt
     1321 ttgatatttt tcaagttttt aatcaaacca tgtcaagtac attagcagga cttggactta
     1381 cacttatgac tatagcaggt ttttctgctt atatggatca tgtaggggct tcttatgcac
     1441 tttttaaagt ttttgaaaaa cctttaaaag ccgtaaaatc tccttatgtt ttactcatag
     1501 ttgcttattt tatcgtgcaa cttttagttc ttttcatccc ttctcacgca ggcttggcac
     1561 ttttacttat ggttactatg tatcctatac ttgtacgctc tggtgtttca aaactttctg
     1621 ccttaagtgt gattgcgatt tgtcaatata tcgatcatgg acctggaagt ggaaatgtga
     1681 tcatggcgtc aaaagtagct gaagttgatc ctgcaattta tttttttcat tatcaactcc
     1741 ctacaacctt gcctatcatt atagctgtag gtattgcgat atatctttgc aataaatttt
     1801 ttgacaaaaa agataatttt gtcttcaatg cacaagaaat tgaaaaagaa ctaaatgaaa
     1861 atgaaggcaa agaaaaagaa cttaaaaagc ctcctagaat ttatgcgatt ttacctataa
     1921 ttcctttggt tttaatccta ggatttagtt ccgtgcttga tagcatcttg gttttaatgg
     1981 gaataagtag tgctgaagaa gttaaagcag ctgctagtac tgccattaaa atgaatgttc
     2041 cagtagcaat ggtgatttca acttttgtgg ctattatttt tgaaatgata cgctataaaa
     2101 gtatagtaga aactcttaat tctattatga ttttctttaa aggaatggga catttatttg
     2161 ttatcacagt ttcactcatc gtttgtggtc aagtatttgc aagcggtctt ttatctgtag
     2221 gttttgtaga tactttaata gaattttgca aaaatgcagg atttggagtt ttggctatta
     2281 ttatcgccgt ttcaatcttg cttgcagttt gtgctttctt aatgggttca ggaaatgcgg
     2341 cattttttag ctttgctcca cttatcccaa atatagcaaa acactttgga gttgaaacta
     2401 tcaccatgat agcaccaatt caaattatga caggctttgg aagatgtgtt agtcctattg
     2461 caccagcgat tttagctatc tcagctattg caaaagtaag tccttttgcc gtggttaaaa
     2521 gaacagctat tcctatgctt gtagcggcta ttgtaaatgt tattatgact tatatctatc
     2581 tttaaaaagg agaaaaaatg aactcaaaaa ctaaacttat tcattgtggc agaggcgatc
     2641 aaggcgctga agtaagatca gtcaatccta cacttatgcg tgcatcaacc atacttttta
     2701 aagatcacgc aacttggcaa aaatacagag aattaagaaa aacagatcgt gttttaagct
     2761 atggggctag aggaacaaca accaattttg aacttgaaaa acttatttgc actctagagg
     2821 gtggttatag agcacaactt ttcccaacag gacttgcagc attagctatg gtgcttttaa
     2881 actatgcaag caaagatgcg cattttttaa tcaccgatgc aatttatggt cctgtaagaa
     2941 cgatttgcga attattttta gaaaaaatgg gtgttgaaat tgatttttta aaagctgatg
     3001 caagtgatgt agaagaaaaa atcaaaccta ataccaagct tatcctatgt gaaagtccag
     3061 gttctatact ttatgaaatc atagatttac caaaactttg caaaattgcc catgcgcata
     3121 atatccctgt agctattgac aatacttatt ctagtggata ttttctaaat cctttagaac
     3181 ttggagtgga tatttcagtt atcgccgcta caaaatatct tagcggacac tctgatgtaa
     3241 ccatgggtat agtagtaatc aacgaaaaag aatggaaaaa ttttgacaaa cttccagaag
     3301 ctttaggctt tacaacaagt cctgatgatg cttacttagt acttcgtggt atgagaacac
     3361 tagatgtaag aatgaaagct catgaaaaaa gtgctgatga aattgtagag tttttacaaa
     3421 gcagaaaaga aattaaaaca attttctatc caaaactcaa atcccaccca aatcatgaaa
     3481 ttttcatgcg tgatcataaa ggtgcaaatg gtatgattac catagaattt gcagaaggtt
     3541 atagcaaaga tgatgctatt aaatttgtag ataaactaga atacttttca attggtgcta
     3601 gctggggtgg atatgaaagc ttagccaccg taactactcc acctagaact gcaacagatt
     3661 ggagtgcaag aggaccattt gtaagatttc atataggtct tgaagatact aaagatttaa
     3721 ttgctgattt aacacaagct tttgatagta ttaaaaaata aggagataag atgacaggaa
     3781 ttagcgtatt tgatcataga ttactagcag actcatggag cacgcaggaa atgcgtgcta
     3841 ttttttgcga acaaaaccgc atacaaaaat ggctcgatgt tgaagcagct ttagcaaaag
     3901 cacaagcaaa acttaaaatt atccctaaaa aagcagctga tgagatcgca aaaaaagctc
     3961 attataaatt tatggatatg gactttatct ttgctgaatt taaaaagacc aaacaccctt
     4021 tagttcctac tgtaagagga ttagaaaaag cttgcgataa taatttaggc gaatatgtac
     4081 attttggagt aaccactcag gatatcatcg atacaggact ggttttacaa tttaaagaag
     4141 caatgactct tataaaaagc gaattaaaag ctatcgcaaa agccctagca aaactagcta
     4201 aaacccataa aaatactgct atgatgggaa gaactttagc acttcaagct ttgcctatta
     4261 cttttggaca taaagtggct atttggttaa gcgaacttga gcgtcatttt gaaagaatac
     4321 ttgaacttga aaaaagactt tatgtaggta gtatagtagg cgctgtagga actaaagcaa
     4381 gtttaagtga tgagtgcaat gaagtagaaa aactcacttt agaaaattta ggacttgatg
     4441 tgcctaatat ttcttggcaa cctgcacgtg atcgctttat agaacttggt tttgtactag
     4501 gtaatatcaa cacaaccttt aacaaaatcg ctcatgaaat tttaatcctt tcgcataatg
     4561 aaattgatga agttgctgaa ccttttggca aaggacaagt aggatcaagc actatgccac
     4621 acaaaagaaa tcctgcagta agtgaaaatg cagttacagt aagcaatgct tttaaagcaa
     4681 atttagccat tttaagtgat attgaaagac atgaacatga aagagatggt caagtttgga
     4741 aaatggaatg gaagctttta cctgaaatgt ttttaatgct ttctgtggtt ttagcaaata
     4801 tgaaattcgc tcttagcgat ttagaagtaa aaaaagataa aatgcttaaa aatttaaata
     4861 ctcttaatgg ttttgtttta gcagagcgtg ttatgtttgc attaagcgat cattatggaa
     4921 aacaacatgc ccatgaaatt gtttatgaaa atgctatgct aggtatagaa aaacaaaaaa
     4981 cttttaaaga agttttactt gcagataaaa gagtatctaa ggtattgaaa gaaaaagaaa
     5041 tcgatgcttt acttgatgca acaagttatg taggatatgc accaaaactt gtagatgaat
     5101 ttttggcaaa aatcaaaaat agcgctatct taaaatagga aaaatcatgt tctatagtga
     5161 aattttagcg gattttattt tcaatcttaa atatgaaaat atccctaatg cagttgttca
     5221 aagggctaaa gagcttatgc ttgatagcct tggaacagct atagcagcaa gcaaagaaga
     5281 atgtgtttta aatgctttta aagcttttga aaatttaagc acagaaaaaa atactcctat
     5341 ttggataaat gatcaaaaat tagatcctat atacgcagcc atgctagatg gcattgcttc
     5401 tcatgcgtta gattttgacg atacgcatac agaagcgatt ttgcatgcaa gtgcgatttt
     5461 aactccactt tgtttaagtt atggttttca tgttagcaaa gatgcgaaaa aaatcatcaa
     5521 agcttttata ataggctggg aaattgcagc tagagtaggc attgcaagca aaggtacttt
     5581 tcataagcgt ggttttcata ctactgctat tgcaggaatt tttggaagcg tgagtgcaag
     5641 tgcaatctta ctagatctta acaaagaaca aatcatcaat gctttaggac ttgcaggaag
     5701 ttttgcaagt ggggttaatg agtttttatc caatggatct aattcaaaag ttttacatat
     5761 tgccaatgct attaaaaacg gcattatggt agctcatttt gctaaaaaca atatgagtgg
     5821 acctttgagt atttttgaag gtagggataa tatctttaaa tgttttggca tagaagaaga
     5881 atgcgataaa acagaactta acaaagcctt aggagaaatt tggcaaacta tgcaagtttc
     5941 aatcaagcct tatccaagtt gtcattttgc tcatgggctt attgattgtg ctattgcttt
     6001 aaaaaatgat ggtttaaaag ctgatgaaat taaaagtatt cattgttttg tagatgaagt
     6061 tcctatttct tttatctgtg atcctttgga agcaaaatac actccaaata gtgcttatga
     6121 agctaaattt tccatgcctt ttttaatggc tctaggattc tttgatggca aaatcactct
     6181 taattcttat gaaaatttaa agcgtgaaga agtactagaa tttgctaaaa aaatcagtta
     6241 cgaaaaaagg aaatctcaag gctttccaaa atattttcca gggcatttag aagccagttt
     6301 gcaagatgga cgcataatcc aaaaagatgt ttttatcaat aaaggtaatt ttgataatcc
     6361 actaagtttt gaagaattaa aagctaaatt tttagccaat gcacaaattt accttgataa
     6421 tactaaagct aacaaaattc tagatcaaat catcaatcta gaaaatttaa accacttttc
     6481 tttttaaata tttatccttc tttttacaag aaggataatt tcattacact tttttattat
     6541 aatatttatt attaatttag gaattacaat gactttaaac gagttaaaag atggacaaaa
     6601 ggctattatt gtcaatttaa acgctcacaa agaactcaaa aatagacttt taagctttgg
     6661 atttattaaa aataaaaact tgaaaaaaat tcactcctct ttaaaaaatg ccaccataat
     6721 ggtagaactt gatacaagtt gtgttatcct aagatctgat gaagctaaaa ccatagaagt
     6781 gaatcttata tgaaaaaaat caaaatagct cttgtaggtc agcctaatgt aggcaaaagt
     6841 cttcttatta atgcactttg caaagccaat atgaaagtag gaaattttag cggagttact
     6901 atagaaaaag caagcgcaaa aactttttat aaaaactatg aatttgaagt cattgatttg
     6961 ccaggaactt attctttaga tggatatagc gaagaagaaa aaatcacacg tcatttttta
     7021 aatcaaaatg actatgatgt tattgttaat gttttagatg ctaccaattt agaacgcaat
     7081 cttatcctta gtgcagaact tttaagcctt aataaaaaaa tgcttttagc tttaaatatg
     7141 tgcgatgaag ccaaaaaaga aggtatagag cttgacactt ctattttaag ccaagaattt
     7201 caaagtcaag ttgttgaaat ttcagcaaaa acaaaagaaa atttagaact tttgctgcaa
     7261 aaaattatta ttttatttga aagtaaattt attccaagat ctcaatttta cactccgctt
     7321 tgcgaaaaaa gtccggaaaa agaagattta ttatatttta ttaatgaact ttcaaaaaaa
     7381 attattacac acaaaaaaga agaaagaaat ttaaccaaaa aaatcgatgc cttacttatc
     7441 cataaattct ttggcttacc tatattttta tttttaatgt ggcttttatt tcaactcacc
     7501 tttagcttag ggcaaattcc tatggattat atagaatcgg gctttaatac cttaggtgaa
     7561 tttgttaaaa acaatatttc taataccttc atcgcttcag ctttggctga tgggattatc
     7621 gcaggtgttg gtgctgtgat actttttttg cctaatataa tgattttatt tttaggcata
     7681 gctcttttag aaaccacagg ctatatgtca agagtagctt ttttacttga tgggatttta
     7741 cataaatttg gtttacatgg caaaagtttt attccactaa tcactggttt tggttgttca
     7801 gtacctgctt ttatggctac acgcactctt aagaacaaaa gagatagact tttaactctt
     7861 tttgtgatca attttatgag ttgcggggca agacttcctg tatatgtgct ttttatcggc
     7921 gctttttttc caagtgaaaa agcaggaaat tatctttttg gaatttatat tttaggtgcg
     7981 attttaggac tttgtgctgc aaaattttta agaatgacag catttcgtgg acttgatgaa
     8041 ccttttgtta tggaaatgcc aaaatatcgt atgccaaatt ggtatttagt ttggtttatg
     8101 gtttataata aagccaaaat gtatcttaaa aaagcaggaa ctttcatact tttggcctct
     8161 ttgcttatat ggtttgctag taattttcca aaaagtgaag aaaatttaaa tgattttaat
     8221 gctcaagaaa gagctataga acaaagttat ttaggacaat ttggcaaaag catagaacct
     8281 atttttcaac cccttgagtt agattggaaa ttaagcgtat ctttaatcag tggtttggct
     8341 gctaaagaag tgatgatttc aactatggga gtgctttatt cactaggaaa agatgtagat
     8401 gaaacaaata atgatttaaa aggaattatc gctaaaaata tacctatacc aagtgcagtg
     8461 gcttttattt tatttgtaat gatttataat ccttgctttg cagcaactat agttttttca
     8521 aaagaaagtg gaaagctaaa atatactctc tttctctttc tttttacctg cacaagtgct
     8581 tatatagtag cttttatagg acttcatatt gctaaaattt tattaaacta acttgctttt
     8641 aatgatgaaa ttttagtaat attatcttca aaagctttta aaatgctata agcaatacct
     8701 tcaaaatcaa gcccaccgca aagatagatt aaagtcatac gaaaagattt actcacatca
     8761 agctttggtt tttcagcgtt catatttaac ttaaaatcat aaggacttgc atgtttaaaa
     8821 gcataatttt ttgccgcaat taaaaaatca ttcttatctt ttaaaaactc tcctttaact
     8881 aaaataaagc ttatttcaag atatttccaa aaatcttttg aaggcatagg attttcatca
     8941 aaattttgct ctataaaagt atagtttttt tcaaaggatt ttttataatt ttctacaagc
     9001 aaagcaccta atttattttt agctatattt tgtaaaataa gttttatatt gctttcaaat
     9061 tcaaaatcta tttgttctaa aattttaatt tgctcttcta gaaaaaattc ttgttttaac
     9121 tcttcattac aaagtttagc gtaagaaaaa atatttgcca taggcttttc ataattccca
     9181 aactcatccc aaaaattttt ctcactacag gctatacaac catgtcctgc ggccactggc
     9241 caagaagttt tagcattgaa tttcacttta ggacagttat tgtaagtata aggtccttta
     9301 caacctatct taaataaaca agctccattc tttgcagcct catcgtcaaa atgttcagca
     9361 aaaatcccac tttcaaattt tgcctttctt tcacacatat catgcaggca tttaccataa
     9421 gcccaaacag gacgattttg ctcatcaagt tcaggtaaaa ctccaaataa agcaaaaaaa
     9481 cttaaagtcg caatgatatt tatatcactt ggaggacaac ctgggatatt tactactttc
     9541 tgacttaaaa cttcactaat accacaagtt ttactaggat ttggataagc agcctgaata
     9601 ccaccataac ttgaacaagt acccactgca aagatagcct tggctttagc ggctagtttt
     9661 tctaaaattt catagccact ctctccttgt gctcctatag taagaaaaaa ggtatcaatg
     9721 gctgcaacac caccttcaac cgctaaaata aaatcttctt ctaaaacatg ctctaaaagc
     9781 tcttcagctt tagtgccatt tgctgccatt aaagtttcat gatattctaa agaaaaaaaa
     9841 tcaaaaataa gctcatcaaa acttggcaac tcagaacgca acaaactctc actacaccct
     9901 gtacattcac aaagatgaag ccatactaac tttgtcttag gtgcgatttg aaaaaatctt
     9961 tgagcaagag ctggaatttc attgcctaaa gataaatgcc tagcaagaat ttttacactt
    10021 tcttcattaa taaccttatc ctcttttaaa gtagaatttt caagtttttt aatgcgatct
    10081 tcaagtatat tttttaattc ttcattgcta agctttgcca ttttttatcc tttttgatta
    10141 tcccaacaaa gaacagtttg cccttcttca tttttttcaa catcacccat acccatgatg
    10201 ttatatcctg catcgacata atgtatttca cctgtaacac catttgccaa atcgctaagt
    10261 aaatacatag ccgaatttcc tacatcttct atactaacat tgcgttttaa aggagaattg
    10321 atttcattgt attttaaaat cattctaaaa tcccctattc cacttgctgc caaagtttta
    10381 ataggacctg ctgaaatagc attaacacgg attcctttta cccctaaatc tcttgccaaa
    10441 taacgcacag aactttcaag tgcagctttt gctacaccca taacattata atgaggcaca
    10501 tatttaaccc ctccaagata acttaaagtc aaaatcgaac ccttatcttt taaaataggt
    10561 aaaactgcac gcgttaaaga aagtaaagaa tacacagaag tttgcatagc tatatcaaaa
    10621 gcttcttttg aagtttctaa aaaagaattt tctaaagctt cttttggagc aaaagcaacc
    10681 gcatgtacta caaaatcaat ctcacctaaa tcttttttga ttttttcagc gatagaatct
    10741 aaatgctcgt tattatttac atcaagctca taaacaaaat tagaattaaa ctcttgtgct
    10801 ataggttcta cacgtttttt taaagcatca tttaaaaaag taaaagcaag ctcggctcct
    10861 tgatcaaaac atgcttttgc tatgccataa gcgatagatt tattatttgc aacccctaca
    10921 ataaggcctt ttttaccctt cataatcatc ttttatcctt tgattaattt tataaaattt
    10981 tctactttta aagctgcaga gcctatcaaa actccaccac aatgatttac acttaaaatt
    11041 tctttgatat tattttcatt cacacttcca ccataaagca aaggtgcctt ggttaaactc
    11101 gctaaaaatt caagcacttt agcgatatct gtactttgtg cactcactcc cgttcctata
    11161 gaataaatag gctcataagc gataatgagt ttttcataat ttaaatcaat aatttcaagt
    11221 tgttttttta aaaactctaa agtcttgcct gaattttttg tatctaaatt ttcacctata
    11281 caaaaaacaa ttttataacc atgctcttta gcaaaatcaa atttagcctt aataaattct
    11341 tcatctccta aagctcttct ttcagaatgc ccgattaaaa cgcatttgat cccaaattcg
    11401 tccaaatgtt cttttccaag ctcgcctgta aaagcaccat taacacaagg ataaaaattt
    11461 tgggctcctt gtatgaagtt attttctttt tctaaaaatg ctacactagg tgggaaaacg
    11521 ataatatcat cgcattttac ccctatagtt ttatttaaaa tttcagcata aattttaaaa
    11581 cttgctcttg tgtgattgca ttttaaattt gcagcaaaga tcattcattt tccttagatc
    11641 ttaaagcttt tacacctgga agttctttac cctctataag ttcaagagaa gcgccacctc
    11701 cagtagaaat aaaagtcatc tcatctgcat cacctgcgcg cgcaaccaca tcagctgtat
    11761 caccgcctcc aacaacagaa gttgcatgcc cttcactaat ataatgactc attttaatgc
    11821 taccttttga aaatttatca atttcaaaaa cccccatagg tccattccac caaatcgttt
    11881 gcgcatcaga aatcacctct ttaaaaagtc tcacacttgc aggtcctata tctaaaccca
    11941 tccaaccatt tggaatttct tgtgctggaa caaatttcat cggcacatct tgtgagcacg
    12001 caggagcggc tacaacgtct actggaagat aaattttcac tcctaaattt ttacctttag
    12061 taagaatttt attagcttct tctaaaagtt cttcttctaa aagtgaattt cctatatcat
    12121 aacctaaggc ttttaaaaaa gtaaatgcca tacctccgcc tatgattaat ttatctacct
    12181 ttggtaataa atttgtcaat gcttgaagtt ttccacttac ctttgaacct ccaacaacag
    12241 cgacaaaagg acgtgctgga tgtttgataa gattgcttgc aaaatcaatt tctttttgga
    12301 gtaaaaatcc tgcacctttg tgtttttcat caaaaaattt agtaatagcc tccacgctag
    12361 aatgtgctct atggcatact ccaaaagcat cattgatata aacttgaacc atagaagcaa
    12421 gttctttggc taaattttca tcatttttag tttcgccttt ttcaaaacgc aaattttcaa
    12481 gaagtaaaat ttcacccact tttaaattca tagctttggt ttttgcatct tcgccgataa
    12541 catcttttgc cataacaatt tctttatcta aaagtctagc aagacgctta gcaacaggtt
    12601 ctaaagaata cttggagcta atttcttttg gacgccctaa atgagaggct aaaatcacac
    12661 tacatccatt atccaaacaa tatcttatcg taggaatagc tgatcttatg cgtctatcat
    12721 cagtgatatt taaaaaatca tcttgaggaa cattaaaatc acatcttata aaaacttttt
    12781 tcttagctaa atcaatgtct tttatagaaa taatatcact catgattaag ccttatttgc
    12841 aatatatact gccatatcta ctagacgact tgaatagccc cattcattat cataccaagc
    12901 aattaccttg ataaaatcat ccgcaatcac ttgagttaaa tcacttgcta caatagctcc
    12961 ataagaacaa gtgataaaat cgcttgaaac tctttcatca tcatctacca ttaaaatgcc
    13021 ttttaaattt gtagctgcag cttttctgaa agcttcattg atttcatctt tgctaacttt
    13081 acggcttagt tgtgcagtta aatccacgct tgatacatca atcactggca cacgcatact
    13141 ttgtccatga agcttgccat taagttcagg cataacaagt ttcatagctt ttgctgcgcc
    13201 tgtagaagtt ggaatgatat tttgcgctgc agcacgagaa cggcgtttat ctttagcttt
    13261 agcatcaata atactttgtc catttgtata agcatgtatt gttgtcataa gtcctttttc
    13321 tatgccaaaa ttatcttgta aaacacgaca aacaggacct aaacaatttg ttgtacaact
    13381 tgcattagaa ataatgcttt cacccttgta aagttctgaa tttactccta aaacataagt
    13441 aggagtatca tcttttgcag gagcactcat gatcactttt tgtactccca tatctataaa
    13501 ttcttgacat tttgccatag ttaaatgcgc tcctgtgcac tctaaaacaa tttgtgcgcc
    13561 gtgttttgca aagtcaagat cttttacatt gcgactttta aatactttga tttttttacc
    13621 atttaccact aaatcatctc cttcactatc aacactgcct ttaaattcac catgtactgt
    13681 atcgtattta aaaaggtatt ttgtaagttc aatatccgta gtatcattta tcgccacaag
    13741 ctcaatatca tttctttcta agatgattct tgcaacacat ctgcctatgc gtccaaaacc
    13801 atttatagca acttttacag ccatttaatt tccttttgca aaatataatg ctaatattct
    13861 acaaaaaaaa ggttaaaatt ttaatgaaga tagcactttt tggtggcagt tttgatccac
    13921 cgcataatgg tcataatagc gttgttttag aggctttgga aaaattagat attgataaac
    13981 ttattattat gcctacttat atcaatcctt ttaaacaaag ttttagtgct gatgaaaagc
    14041 aaagattctt atgggttaaa aaactttggg gacatttgcc aaaagttgaa atttgcgatt
    14101 ttgaaatcag gcaaaaacgc cctgttccta gcatagaaag tgttaagtat ctttataagc
    14161 tttataatcc tagtaaattt tatcttttaa ttggcgcaga tcatttagaa aaacttcatc
    14221 tttggcatga ttttgaaaaa ctcaattctt tagtagaatt tgttattgcc aatcgcaatg
    14281 atataggaat tcctaagaat ttcaaagatt taaaaaccaa taaaaaaatc gcttcttctt
    14341 tcatacgcga cactttaaat acaaatgagg tttgtgaaga aattaaagat gaagtaaaaa
    14401 aatattatga aaaattacaa aaaaattgat acaatttcaa aaattaaagg acaataatgc
    14461 aagaaagaat agatttaatc gttaaaattt tagatgaaaa aaaagctgaa aatatcaaaa
    14521 ccattgacat gagcgagcaa gaatactttg taaaatatgt cattattgca gctactttag
    14581 gagaaagaca cgctctatct ttgatcgatg agcttaaaac acgacttaaa gccaaaggtg
    14641 aggaattttt aaacatagat agtagtgaag aatggagcgt gattgatctt ggtgatattt
    14701 taatccatct tttaacacca gaacacagag gaatttataa tatagaagaa ttattagaaa
    14761 atcttaaaaa aggtagggtt taaaaaggct aaaatttatt agtcttttta atttttagag
    14821 attatcgata tattctttaa tttatttttt gattttctct ttttgttctt ttaaagcttc
    14881 ttttttagct ttatactcag ccttgctcat ataatctttt tgttctttta aagcatcaag
    14941 ttctttttcg attttttcca cttcttgttc tttaagtttt ttagcttcta actttttatc
    15001 ataaaacata ggatctttag cacaatcatt ttgtacttgt tttaaagcaa gctctaagct
    15061 taaagttcta gctgtatcat tatgcgcttt agaaaaactg atttctttat tgatacgatc
    15121 gatttttcta tcacattcac ttgcaccaaa agcaaaagca catagtgtaa gtagaataag
    15181 tatttttttc atttttaatt cctttttaaa ataaattaaa tcgcggaata ttatctcatc
    15241 aattcttaaa tctagctttt atatcattaa acaaagtaaa taccatactt tcaagctctt
    15301 ttgctctttc taaagatgtt gcctcaaagc gtgtgataag ataagggctg gtattagatg
    15361 cacgaagtaa agcccatcca tcgccaaaat ctatcctagc tccatcaatt tcacaaagac
    15421 ttttaacacc ttttaaagct cctttttcaa tctctttttg aaattcttcc acaagtttga
    15481 atttttcttc ttcatttaca ggaattttaa tttcaggtgt agtataaagt tttggtaaag
    15541 ctttaatcat actttctaga tcaaaacctt tataaacaag ctccaaggct cttaaaaatg
    15601 cataaattcc atcatcataa ccaaaatatc tatgtttaaa gaaaatatgc ccactcactt
    15661 cagcagctaa atcaatatct ttttctttca tcattttttt gatattagaa tgtcctgttt
    15721 ttcccataaa aatagttcca aatttagcca cttcatcaaa aagattttta gaacatttta
    15781 cctcacctaa aatgcgtgga ttagggatat ctttagcaaa caaataacaa agctcatccc
    15841 cacaaaatac atgagtttta ctcaaagcaa ccattctatc agcatcccca tcaaaagcaa
    15901 aagctaaaga ataatcttga ttttgattta aaaattctct aatcgcactt aagttttctt
    15961 cttctgtagg atctggagca tggtttggaa actgtccatc aggctctgca aacattacat
    16021 gagcttttaa atttaaagct ttaattaaag gctctatcac tactccagcc gcaccatttg
    16081 tgcaatcaac accaaattta taattaaaat cctttaaaaa gctaaattgc tcgcacataa
    16141 atttcacata aaggtttaaa atatcgtatt tttctacttc taaattttct tcaatatcat
    16201 catctaaata cttataaact tcttttgaaa actcttttaa ctctacgcca aaaaaacttt
    16261 ctttattgat agtgatttta aaaccattat aatcttttgg gttatgagag cctgttatca
    16321 taacatttgc atcaaatttc aagccctcat aaagactaaa ataccccaat ggagttggca
    16381 caagccctat atcatagatt tttattcccg ctttgttaag tccactcacc agataattaa
    16441 aaagctcatt tgcactatat cttgcatcat aacccacact tacattttta cagcctttat
    16501 ttagcatggt ttgtcctaag caaaaaccta tagccttaac acttttttca ttcagttctt
    16561 tgccataaag tcctcttata tcatattctc taaaaatcac atctaacatt attttccttc
    16621 aaattcatct cttctttaac ctaaatttat cgtttttcta aagcaaattt ggatagaaaa
    16681 gaaatttttg ctacaatttt acattaattt cactaaatga aggaaaattt atggatgaag
    16741 aattagaaaa cgaagaaacg aaaaagaaaa aaggtggttc acttgtaatt attattgtta
    16801 ttttactttt tgttttactt cttagtatta tgggagtgat tgcttggctt atttcaagca
    16861 gttcaagtga tgaaagtgaa gtcaaagaag ctccaaaaga agaggcaaaa gccgataaac
    16921 ctaaagtttc agctcctact cagcgaggta gtgattttgc taatataggt cctatgtatc
    16981 cacttgatcc ttttacccta aatttactta gcgatagtgg ttcaagatat gtaaaatgca
    17041 ctatagaact agaacaaaat agcgagcttt taaaacctga acttgacaaa aaagttccag
    17101 tgatccgtga tattattatt cgtacattaa cagctaaaac ttttgaagaa gtaagcacac
    17161 aaaaaggcaa agaacgttta aaagatgagc tagttggaaa aatcaatgaa attttaaccg
    17221 atggctttat taaaaatgtt tattttacgg attttgtagt ttcttaatgc gtgtaggctg
    17281 tgatatcatc gccatttcta ggatagaaaa aattcattct agacatggca aaaatttttt
    17341 ggataaattt ctaagcccaa aagaacaaat actcattaaa aatccagcaa ctctggcagg
    17401 tctttgggct gctaaagaag ccgctagcaa ggctttaggt gttggaattt gtgaattatg
    17461 cagttttttt gatattgaaa tatcaaaaga tgaaaaaaac gcgcctaaat taaaatattc
    17521 tcaaaaaatt acaaaagatt ttaatatcac tcaaacttcc ctaagtattt ctcatgataa
    17581 tggttttgct atagccatag tggctatagt ttgattattt tcctatagtt tgcttgtcta
    17641 aatttcttga aagtatgaaa tccaccacag gttgttctct tttatttgct cttttacaat
    17701 gatctttttg aaaaaaatct gtgattttta taacaatcct tgcccatttt ttgcgatttc
    17761 tttcacgcca cgcatgagaa gaaacgctct cccaagcata gccattaaac aagcttgcat
    17821 ttacaaaatg atctaaggct ctaacaccct gtcttgctcg tgcggtatta aaaaaagttc
    17881 ctataatcac gataaaaaga tatcctaaaa ctgctaaagg tactattgca caaagcagga
    17941 tagtccctgc taatttttct tttaagcttc cttttaaggt gcgttttaca cgacgacgaa
    18001 aattggcacg aattttagtt ctaactcttt tcatagctct cttttgctaa attttatcct
    18061 cataccatta gccgaacgca ctgttaaacg ccctactaca tcaggtacaa aaccttcttc
    18121 aagttctagt ttgtaagttt ttaaaatatt agccaaaatc aaaatcgctt cttgcatagc
    18181 aaaaccttgt cctatacaaa ttctctcccc taccccaaaa ggcaaataag catctttttt
    18241 gtattctcct tcaaaacgag aaggattaaa tccatgcgga tttgtccaaa attcttcatg
    18301 tctgtgtatc aaccaaggag caatcaccac cccagaacct tttttaataa gcttatctct
    18361 aacttgggta tctttttttg cctctcttgc aaaaaatcca acaggaggat aaagccttaa
    18421 agattcttta aaaatattta ttaagtattt aaactgtctt agatgcgaaa tttcaatggc
    18481 tccaccctgt aaaacctgag taatctcctc ataagctttt tcttgctcct taggataaag
    18541 actaagcaaa taaagcgtcc atgtcaaaga acttgctgtg gtttcatgtc ctgctaaaaa
    18601 aagcatagct acttgatcta aaatttcctc aaaagaaaaa cgcttattcg tatccgcatc
    18661 cactactaaa agcaaagatc ctaaaatatc ttcaaattct gcattatctg ccatatcata
    18721 tcttggtttt atgatgtcac ttaaaacctg cctaatcaca tctccggcct tagcacgctt
    18781 acgatctcct aatacataag aaagccattt tggaaaacga aacatacgac gcatggctgt
    18841 atgcacactt tgctcttgaa aagtcacaaa ggcatttaag atttttttac ctttttcctc
    18901 attgagtttt gaagacataa tggtacgaaa aataacatca gcggtaataa aagtcatagc
    18961 ttcatctact tcgataacag catgatttgg atacttgcta aaacgatcca tcatatctgc
    19021 cacagcttca ctcatgagat taaacacttt attgatacga gtcatttcaa aacttggacg
    19081 caaaagttct ctttgttttt tccaaacttc accatttgta gtaaaaatac tctcccctaa
    19141 aagcggactt aaaagctcat gtaaaaatgc acttttagga aattctctaa cctcatcaac
    19201 catcattctt ttaacttctt tagtatcatt tatgacataa agatcaaaat ttggcatctt
    19261 cacatagcct gtttgcattt tataactacg ctcataaagc ccgtcaagcc aagatctacg
    19321 ctttaacaaa aaagttaaga gcgtagaagc tttattttta taaggttttg gaaaaaaggg
    19381 gcattcactc atatttttac cttttcttct aaaaatttag gcattatgat gaaagaaaaa
    19441 aaatcataat cacctttaac actaatacta taaagatata aaaagtgcgc tttgttttta
    19501 tctcttttta tttttttata ctcatgtttt tcatataaag tgtgaaattt agcacttaaa
    19561 aatggaggtg taaatttagc atttacgcca ctcgtgcgga aaaaatccac ttgaggaaaa
    19621 catgctccat caataatcga tgtgtaatca taccatttta aatcaaacct tgaaacaaat
    19681 tcaagcttct ttctaaattc atccgctttt ttttgataac tcactaaagg aatgcattct
    19741 cctagagtaa gaatttttaa cttatgaagt aaagataaat ctaaattttg tcttaaaata
    19801 cactccaaaa cttctataca aactatagtt ccaacactat gtgctactaa aacaagttca
    19861 taatcttgtt tattttcatt ttgttttagc ttatctacta tggtatttgc aaaaagcttg
    19921 attctttctt gcatagtgcc tgttttttta tcttgccaag tagcacaaaa agcacaaatt
    19981 cttgctatcc aaaatacagc taatttctta cctaatttaa ataaaaaatg atttagcaaa
    20041 aatcctaaaa aacatcctat gatgatagct aaagaaaaat gcatataatt ttgcaaaaaa
    20101 gcaaaacttc caaaagctaa aaccaaagaa aatagtaaag aaaataacac ataaaaaaaa
    20161 ggataataac ctgtgataag ttgataaatc gactctttac caaatttgat aaaaagtcct
    20221 gtgatagtat aaattctaaa aaaactataa caatccgcta aggcatcttt gtaattttcc
    20281 gaccaatttt tcttaacaat atcattccat gttaaaaaat gatatttagt ttgcactccc
    20341 tcgcaagaaa ttttaaaaaa aggaaattgc tcattttttt caattttact taaatcagct
    20401 ttaatattaa aagtatgaga ataatctttt aggttttttt taaataaatc ataataaaat
    20461 ctataacttt taggatcata tcctgctata taaaatactt ccctatccat acaatatttc
    20521 tttttgcttt taattataac aactttgctt taaaagctct cttaatcaaa gctttttagt
    20581 cttatttgtc taaaaagaaa tttttataaa aattgccgtt gaattgatta gtttgtaaaa
    20641 gatatttttt aaaattacat accaaaacag gattgggttt ataagcatga gcttcacgcc
    20701 aaaaaaattg aagttttttt ggataagata aaccttcaaa atcataaaaa gcattgccac
    20761 aaaccttagt cggacagcct tctaaaatag cactaagacc tactgttgaa tttatagtaa
    20821 tacaacctaa agcctttctt aaaagaactg gcaagtgggt atcatgaaca tataaaaccc
    20881 ttccctctac atgatatttt tgacttaaat catttatgag tttagaataa ttcttataac
    20941 ccctatccat gggatggtgt ttaaaaacta gataagattt agctcttgca tgatttgcaa
    21001 aagaaagtat ggtttcctct ataaagtgct ctatgctttt tttgtaatga tatttaattt
    21061 gcgtatcgct ataaacttgt aaaatcgcca aaaagtactt tttttctaaa ttataaatct
    21121 tttcatttag ttttttttct gtaatcttat aaagatactt tctatacaat gatctaaacc
    21181 aaaataaaaa ttcaaaagga tataaagtgc gatgatgaag tttgttgtta aaaaatggag
    21241 ccaaaataaa agcaaacaac caatacaaaa aagcatcaaa agccataaat ttaaatccac
    21301 ctggaatttc ttttatgctt tctttggtaa aaatattttg agaaagataa aaatttttat
    21361 cacgcggtaa agaagaattt gcattcaccc catctttttc caaagtaata caataaggcc
    21421 ttaaatatcc ttcttcaaaa atccatattt caattcctaa ttctttagcc actttaatag
    21481 ccttagcatg gataatacga caatcattat acattaaaat agcatcgatt tttttgcttt
    21541 gaaaaaaatc tctatagaaa ttttcaagat ctttttcatc gcacttacac ctcgttccac
    21601 taggatagaa aaaaaaatct ccaccgttaa aattgagttt aaaaactttg gtttgttttt
    21661 tttccattct tattgcaaga tgatgaaaaa aatttcccac aggcccttgc aagagtaaaa
    21721 catttttacc gctaaattct tttttaattt tagtattaaa tctcatttct ttgctaaaaa
    21781 ttcataaaat cttcttattt ttctaagcat aaaagtttta aaatctattg ccaattttat
    21841 atattttttt gaaaaataag ctttttgtaa atttagcatt atatctaaac aaacttcaat
    21901 ttcacataaa gtttttgttt taggatttat atatcttgga tatgtgatca aagcacctgc
    21961 tacaagctcc tctaggctta gttttcttgt tcttcttttg catttatgtt tatcttttgt
    22021 taaaccccag cccgcataaa aaggcatacc ataagtaaaa acttttttag ctcttaaaag
    22081 agcatcaaaa ccacttgtag aagtaatagt gtgaatttca tcagcaattt ttatagcact
    22141 atcaatactg caatctttta caatctcatc acaaaattcc aagatgcgtg tttcatcttt
    22201 taaacccaca cggttgccac tcaacacatc aggatggggt ttaaagatga tataagcatc
    22261 ttgattttta gaacgtacct ctttaagcaa atcaagagta gataagccaa aacctcctaa
    22321 aatcatcgaa gcatcatctt caacttgagc agggattaaa ataatctttt gtcctatttt
    22381 ggcattgatc tttaagtctt catgctttaa gccattatat tttgaaaagc ggttctcaag
    22441 taagattttt ataatatttt ttgccctatt tagtatattt tcatcaaaaa tttcattttg
    22501 caaaagctct tctaatttac ttgctttatt tggatctatg taaagtcctt tatcatcaac
    22561 gattaaagaa aaagggcgcg taagatcaga acctaaagag attgagcgga taaatccatc
    22621 ttcaactaaa gaaattttag gagtaaaatg aagcaaattc tcatcttgtg ctttttttat
    22681 aagagtagtt ttaagagtat tataatctat ccttttaccc caaataaaga atttatcatc
    22741 ttctttaagt ttatatctag ctaaagattt taaagaattt aaaaaaatga tttcattgtt
    22801 tttagcctta aaaaaaggct tgataaaatg ccttttccat aaggtaaagc ctagcataag
    22861 aagcctgtta gaatttgcct tttctatatc tttatatttt gctaaagttt gaatagtatc
    22921 aaaaatatta cttttttgat ttaaataagg attaaaatac tcgctataaa gtatataagc
    22981 agcatagaaa acttcttcta aacttctttt ttgcatcctt cttttacact ctaatttatc
    23041 ttttgttaga ccccaacctg cataaaaagg cataccataa caaacacact cacatccttg
    23101 catcaaagct tcaaaaccca taccagaagt tttggtataa accttatcaa aaaactcaag
    23161 taaggctatg ggattaaaat tttcagtaat taaaatacat tctttaggta aggaatttat
    23221 atctaaatca ctttgttttt taccgcttaa aacatcagga tggattttta tataaatttt
    23281 agatttagga ttttctttta tggcatcttt tatcatatcg atggttttaa aacctttagc
    23341 aagcccaaat tcaagcgagg catcattggc cgtttgggtg atgattaaaa cccttttttc
    23401 atctttttga aaataatcat ctggaatatc gagattgtta ttatacttgc taattttata
    23461 ttttttgata agctctatag cttttttagc ttgcttgatt tcttcatctt taaattcaca
    23521 agtatttaaa agattttcaa gctttgaagg cattgttgca tcataataaa tgcctatatc
    23581 atctttaacc atagaaaaac ttgggctatt ttcaacccct aagtttaatg agcggataaa
    23641 tccatcttct aaaagtatga atttagcctt atatttttta gctaaattca tagcttttaa
    23701 acctgatttt ttgcgtcccc aaccaaagaa aagatcatct tttttgattt ttaaattttt
    23761 cttatacaaa gaaatagtat aaaaatttct agcattagca ataagttttt ttgatattga
    23821 gtaatgcttc acaatcccaa tttctttatt ataagttcaa ctttttcttc taaattattt
    23881 cgacaagaat tatcaatcac taaatcagcc tctggtttat caaattctat atcaacacca
    23941 actacattat caatttcttt atttaaagcc ttagtataaa gccctttttg atctctttgc
    24001 attaattcat gcatatcgca ttctatataa atttcataat aattttttaa ttgctttcta
    24061 ttgtaatcat aaatctcatt aaacattgaa atcgtagtga caataactat cataccttga
    24121 tcgtttaaaa attttgcaaa tttagctctt ttcaaagcca tatctatgcg accttgttta
    24181 tcgtatgcat aatgtcctaa tatttctctt aactcatctc catcgagata aataagattt
    24241 ttatatttta gttttaattt ttcatacaaa gcttgaccta tagttgtttt tccgcttcca
    24301 gctaaaccag taagccaaat aatataagga ttatttttca atttgcacct ctaaatcact
    24361 cataaaatca atttcacacc aattgccatc aatttccact gcttttgcgt tgttatattt
    24421 ttcaattaaa gcctgcaaaa aacttgtcat atacatattt tcaaaatttt tattatcata
    24481 taaaatatct cggtcaagca tttcataaaa agcaataact tcggaaagaa attgataaga
    24541 aaatttaaaa agtcctatat attgagcttc tatctcatca tgggcattag ctttttttcc
    24601 aagttctata atataaccat ttgtcatctt taatgtttca gcatcttcta aaggatttgc
    24661 aaagcgtttg ctccaaagct tacgccaaga cttatcaact actatagcaa gttcttcttt
    24721 ggcatttata agcttttgca cgcaatcttg aaaataaata atatccgcat aagaaataat
    24781 caaatcttgt ttttcttcga tgcattttaa cataaaatct ttagcgcaaa aaaaagtata
    24841 aaccatattg gttttatcat attttgaatt aataaaaaaa tgctcaatat catatttatt
    24901 aagataattt tttagcacat cgtttaaata tccacccaca acagctattt catttatacc
    24961 tgctgatttt aaagcttcga tttcataatc tattattttt ttattcttat actcaaccat
    25021 acactttggt tgatcttttg ttaaaggcat cagccttgat ccaaaacctg ctgctaagat
    25081 aattgcattc atattattcc ttgattaaac taaaccactc tcttaaaatt tgaatattat
    25141 taagcccatt ttctctttca atatgccaca ttataccaaa aatattttca tacttatgct
    25201 taaaagcttc tatggtatta tcttctgcta agcaaagttc tacaagatct tcgcctaatt
    25261 tttcaatagc aaaattatga aaagaattac ttataaattt ttcttttgag aaaaatactt
    25321 catgtttgcc tatatgattt tcacaaggac tcatatggct gttaaaataa tgagctatca
    25381 tctgagcccc tctgcaaatt cctaaaagtg gtattttttc ttctaaacaa atttctataa
    25441 cttgcttttc atataaatct ctctttttgg ataaaacatt aggactataa aaacttaaat
    25501 cattgccacc acttaatatc acagctttta ttagatgttt ataataagaa aaatctattt
    25561 catagctaag aggaagagga gtaaaatttt taaataaatc tttattaaat aattttcccc
    25621 aatccaaagc caaacattct ctttcttcat gataactatc gttgcaaata agcctttgag
    25681 taatacctat aaacaaaata tttgctcact ttcacattct atatttattt ttttagcttt
    25741 taaatatttt tcaaaatttt cttctccaac tcctataaca gcaggcattc caagttctga
    25801 ggcacgaatg gccatatgcg aattagcacc cccataacat gtaataagtc ctgctatatt
    25861 ttttgtaaat aaataatcat atccgggatc tgccgcataa attaaaacaa tctttccttc
    25921 taaatcttta tcattttctt tagccgtaaa tgcagttatg cttttttgtg taataaaatt
    25981 tggaataata ctatgattat aaaaagaaaa aatttcatca gcattacaaa gtaaagaagg
    26041 aagctttata gcttgtgtaa gttcatattc ttttttattg cgattaattt cttctaaaaa
    26101 ctgttctttt ggatttatag aataaagact agaataaaga tttaaaatgc tttttatatc
    26161 aagatgagcc aaatcttctt tttcaatacc ataatacttg cctaattctt ctatataaac
    26221 tatggcttta gaaagtaatc tagtaaattc aaattttacc aattctctac cttcaatagc
    26281 ttgttttaaa aaatcaaaaa attcacaagc actaatttct agtccatgtt ctttaagtaa
    26341 agcatttaaa gcctttgttt tttcttctga taaaataagg gctttatcct gtaaataaat
    26401 tttatgatct ttctgattga tatcaaaata aagatcaaaa ttttcatcat atcttggaga
    26461 taaaatatta taagttcctg ctcttaagtg tccaaaatct ttcaaaaatt gatctttgtt
    26521 gtgaaaatta agatggtttg tttgtttgct taaattttta ctcactgtat tgagtgaatt
    26581 taaaaaatca tctttttcct ctttggttat aaaatcaatc tcaactaaag aatttaaaag
    26641 ttgcattgct acaaatgcag ccctagccac ccccgcaaaa ggcaaggttc cataacgctt
    26701 gcattcttca ataagccaat aaattttatc aattaaagaa aaattagaat taataatgcc
    26761 atcatatctt tcttttagct tataagcttt ttgtatgtct tttaaataaa accctgatct
    26821 aggattaata atcttatttg taagttctaa taatgaaaat tctaatcttt tgatttcatt
    26881 ttcattaaaa ccatgattta aaagttcttc taatttttta gaactattaa agtcataaca
    26941 agaataaaca atattaaatt caatcttatc gtgcaattca tgatttttat taagcttatc
    27001 taagtaaaaa ttgacaagtt tttgcgcaat attttcatct aatttttttg gtataaaaga
    27061 attaaaagat aatcttacat ctacataagg aatgcctaaa aaagaatgga ttaaaggatg
    27121 ggatcttaga tctctataac cataattatc tctttgatac gcccagatat tatccgtaat
    27181 gatttcttta tataaactaa aagctaaacg cttaggtctt aaccctatga tttcagctgg
    27241 attccaatca ggcattaccc caaaaatggc tttatctcct aaaaccctag atcttgattc
    27301 ttttaaagac tcaaaacgtt tataaaatct atataaagct tcttttggta aagaatgaaa
    27361 taaattattt ttttcatgca taaccaaagg acgcacttgt aagcaaaaaa gttcttcctt
    27421 atcatcttga atagcaaatg caaattcaac atctaaaaaa caacagtcat ataaaacttc
    27481 taattctttt ataagttcta taattttttg aagtctaata tctttaaatt ctaaataatc
    27541 tctgtaatga tagtaagttt ttgcactctt actacttcca tctgtaatag agctatttga
    27601 accattttca tcatattgaa gacaaaaata aggggaaaaa ttatccttat caacactaaa
    27661 accaactcca caaagagtaa tgttttcaag cataggttga actaaaattt catcgctttt
    27721 tgatggcata gaattggcaa cttcatataa agcttttaat aactcatctt tagaatcagc
    27781 ttcaatattt gccaaagaaa gaaaagcacc tgcattggag tttttcatac tatcttcact
    27841 taaagaagaa cttcttataa tgagtctatt agcctttaaa gtttgaatat cctgtaaaac
    27901 tttatcttca tttgatatta attcttcaag cgaagttaaa accaaaggta gaacttttgc
    27961 tttttttaat tttgtttgta aattttttaa attttgtgct ttggttttaa aatttaactc
    28021 cgccatgttt ttccttagtt ttatattttt ttagcactcc aacaacgagt ggtatatttt
    28081 atgctaaatt ccttaggaag tctttgtgaa attttatcac taattttatt aaaaagttca
    28141 tttccttcat cagtctccaa atcccagtaa ggatttttaa cgcttttcca tgcattaata
    28201 taattttcaa tgctttgatg aaaataaaaa tcctcttcaa tataaacaat attatcaaaa
    28261 agaccctttc gactctctat aattggtctt tgatcttctc ttcttgttcc ccttgtataa
    28321 tttggtacaa attctacaat agtatcttca gctatttttt gtacaggatc gtttaaatcc
    28381 ctgtgattcc acatacaaga aaaatatccc tctggtttta ataagcgata tgcctcttct
    28441 aaggcttcat ttctatccat tacattaaaa ctactaccaa aagtcaccca atcaaattca
    28501 ctattttgaa gtgttgagtt taagcctgtt gctctaaccc agtcaatctt ttgaccctta
    28561 gttctttcta tcccgatctc acgcatcgca tcatttggtt ctacagatac taccttacat
    28621 cctctttcta aaagcataat gcttagattt ccagttcctg caccgatatc agcgacttta
    28681 atatcttttt ttccaactaa actaataagc atatctatag tttttggagc ataattcggt
    28741 ctatagctat aaaatttagc atgcttggta taatcccaca cttgttctac tagtttttgc
    28801 actttatttc cttttttcat ctttgacaag cttgatgaaa aaaaaggagg tattttatgc
    28861 ttttctagct gtccatgctc ttattttata aggaatctct atactttgca tatgagaaat
    28921 tttagcttct atcatctcta aaatttcctt ccatcttttt tcacctgctt gtgcttgtat
    28981 atcatttaca gaatgccaag ctccaagata acgctcttta tcccaaaact ctttatagtc
    29041 acactccata aaaaagcagt ctgtgaaatc tcctgttgaa acaagaattt cttcccattt
    29101 tttaacattt tgagtgccac tgcttacacg agcaagatct ggaacaatat gtttaatctc
    29161 cttttcaatt tcatcaaaaa ccgaaccctc tacaatgtgg cgaggattcc aaatcgcggt
    29221 aaaatacccc cccctgtcaa tatacgatta aattctggga gagatttttt aggatctgtc
    29281 caatggaaag aactagccat gatgacccaa tcagcttgat tattgctcat gcaggtttct
    29341 tcgccactcc ctttatgcca agaaatattt gataaatttt gtgtaaattt ttgcccttct
    29401 tcgcgcatat tatcgtttgg ttccacagca ctaatttggc atccaaacat ttctcccaac
    29461 atcttagtaa gttttccagt tccagctcct acttcaacaa tatttaaatc tttaaaattt
    29521 ttatttttat cattgataca agctacaagt ttttcaagta aaaacggact ataagcaggt
    29581 ctattgtgat aatgttttgc aacttttgta aaatcccctt gtttcatatt gattcctttc
    29641 tctaatttta aacacaatta tatctttttt ttattaattt acaaatcttt ttcctgaata
    29701 tcaccatcca actccttgca catttgttca aattcttgat agtatttcca agatgctact
    29761 atatctggac gatattgttt gataaatttt aactctttgt gtagcatatt aaagacttta
    29821 tttcttatta atttattatt tttaaattc
//
LOCUS       DAZBIH010000009        29405 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.009, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000009 DAZBIH010000000
VERSION     DAZBIH010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 29405)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29405)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29405
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.009"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..257)
                     /locus_tag="ACHFOB_000321"
     CDS             complement(<1..257)
                     /locus_tag="ACHFOB_000321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5799156.1"
                     /translation="MKELFQKIWQNELQFLNFDAKFQDKSKLDTAECAIILSVNKDNY
                     ERYFLLKEFQELCKKIDLRVDIFSMQNAQICILNLFKSGFIS"
     gene            complement(285..1010)
                     /gene="frdB"
                     /locus_tag="ACHFOB_000322"
     CDS             complement(285..1010)
                     /gene="frdB"
                     /locus_tag="ACHFOB_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase iron-sulfur subunit"
                     /protein_id="HFN5799157.1"
                     /translation="MSRKLTIKAFKYNPLSKISKPHFVTYELEETPFMTVFVCLTLIR
                     EKMDADLSFDFVCRAGICGSCAMMINGVPKLACKTLTKDYPDGVIELMPMPAFRHIKD
                     LSVNTGEWFEDMCKRVESWVHNEKETDISKLEERIEPEVADETFELDRCIECGICVAS
                     CATKLMRPNFIAATGLLRTARYLQDPHDHRSVEDFYELVGDDDGVFGCMSLLACEDNC
                     PKELPLQSKIAYMRRQLVAQRNK"
     gene            complement(1003..2994)
                     /gene="frdA"
                     /locus_tag="ACHFOB_000323"
     CDS             complement(1003..2994)
                     /gene="frdA"
                     /locus_tag="ACHFOB_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase flavoprotein subunit"
                     /protein_id="HFN5799158.1"
                     /translation="MNIQYSDALVIGGGLAGLRAAIEVAKSGQSVTLLSICPVKRSHS
                     AAVQGGMQASLANGAKGEGDNEDLHFADTVKGSDWGCDQEVARMFAQTAPKAVRELAA
                     WGVPWTRVTKGPRTVVINAQKTVIEEKEEAHGLINARDFGGTKKWRTCYIADATGHCM
                     LYGVANEAIKHQVKIIDRMEAVRIIHDGKKCLGVIARDLTNGQLIAYIARGTMIATGG
                     YGRIYKQTTNAVICEGTGAAIALETGLCRLSNMEAVQFHPTPIVPSGILLTEGCRGDG
                     GILRDVDGYRFMPDYEPEKKELASRDVVSRRMMEHIRKGKGVKSPYGDHLWLDISILG
                     RAHVEKNLRDVQDICKTFNGIDPADEGPKGWAPVLPMQHYSMGGIRTKPTGESQWLNG
                     LFACGEAACWDMHGFNRLGGNSCAETVVAGMIVGDYFADYCKNNGEVIDTNVVKDFLT
                     KEYQYLKSLVDKEGKHNVFEIKNRMKEIMWDKVAIFRTGEGLKEAVDELEKLYKDSQD
                     VKVHCKELDCANPELEEAYRVPRMLKIALCVAYGALLRTESRGAHYREDYPKRDDLNW
                     MKRTNTFWVEGETLPRIEYEELDIMKMEIPPAFRGYGAKGNIIENPLSEKRQAEVDAI
                     REKMEAEGKGRYEIQNALMPYELQAKYKAPNQRIGVDYE"
     gene            complement(2978..3760)
                     /gene="frdC"
                     /locus_tag="ACHFOB_000324"
     CDS             complement(2978..3760)
                     /gene="frdC"
                     /locus_tag="ACHFOB_000324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarate reductase cytochrome b subunit"
                     /protein_id="HFN5799159.1"
                     /translation="MRELIEGYLGKSIEGKKSKMPAKLDFIQSASGLFLGLFMWVHML
                     FVSTILVSEDFFNSVVHFLELKFVYDNPVMSYLTSFLAACVLVVFFVHALLAMRKFPI
                     NYRQYQILRTHSKKMNHSDTSLWWVQAFTGFIMFFLGSAHLIFIVTNADKISGDMSGD
                     RVVSHFMWLFYAVLLVCVELHGSIGLYRLCVKWGWFEGKNVKESRKKLKTAKWIISIF
                     FLVLGVLSLAAFIKIGYENYQNQTQTTAMIKNYNGANYEYTI"
     gene            complement(3830..4645)
                     /gene="lgt"
                     /locus_tag="ACHFOB_000325"
     CDS             complement(3830..4645)
                     /gene="lgt"
                     /locus_tag="ACHFOB_000325"
                     /EC_number="2.5.1.145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008961 -
                     phosphatidylglycerol-prolipoprotein diacylglyceryl
                     transferase activity [Evidence IEA];
                     GO_process: GO:0009249 - protein lipoylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HFN5799160.1"
                     /translation="MEFWQHIYSNFNVIAFSIFGLKVHWYGIMYVIALLLALLLAKFF
                     VRKFQLDINEKHLDSYFIWVEIGVILGARLGYILIYDANTMYYITHPWQIFNPYINGE
                     FVGIRGMSYHGAIIGFLIATLLFCKKYKTNPWIFLDLVALSVPLAYVFGRIGNFLNQE
                     LFGRITNVPWGIYVDGVLRHPSQLYEAFLEGIVVFIIVYLARFKQSFQGELILVYAGA
                     YSLARFICEFYREPDFGIGFVLWGMSMGQILSFIMFITALLVYICIKFKKVNI"
     gene            4735..5634
                     /locus_tag="ACHFOB_000326"
     CDS             4735..5634
                     /locus_tag="ACHFOB_000326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane lipoprotein lipid attachment
                     site-containing protein"
                     /protein_id="HFN5799161.1"
                     /translation="MKKYILLASSMLILAACGGTSSNFVNVSMPNFKPQVPTKVEPIN
                     SGVSIALEPINIEQNNNYSDYFENSVLKIRIEKEIDLLKQNLEEQIKTIAQLKGYKIV
                     TTNPDYTLKSSISIYTEEKNAQKTSNFMSGDYVKSNLGINFKGKIDFIDAHNPQNSTN
                     LSSSTKLDSLVALNYPIKNDDGVNMFKTTISTVPTQLNKGLEQPAFEIDKSFLAFYKN
                     TLNTLYNNLPKATDIGKTIPNTNSGFNSFDGDATFEESLPQTNSNQNNTIENTPTQNI
                     PTNPSSTNQNNQSKNQDGVEIFE"
     gene            complement(5708..6496)
                     /gene="aroE"
                     /locus_tag="ACHFOB_000327"
     CDS             complement(5708..6496)
                     /gene="aroE"
                     /locus_tag="ACHFOB_000327"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004764 - shikimate 3-dehydrogenase
                     (NADP+) activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0019632 - shikimate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HFN5799162.1"
                     /translation="MKFLAVIGDPISHSKSPRMHNNAIKALGLDSIYTRYHLRNANCL
                     REDFFKLGLSGANITLPFKEKALDIADVKDDFARNIGSANTLCLKEDKIYAYNTDALG
                     FLEAIKDFDNIKKALILGAGGTALALAYALKQKGVEVYIANRSKERFKDFLAYPTYLY
                     KNLQDFDFDLVVNSTSAGLKDENLPCDRELLDGILPKAKFAFEVIYGRETPFYRLCKE
                     YHLKIKDGLDMLLWQGVFAFELFFEIRDKREMIKNAMQQALILK"
     gene            complement(6493..7329)
                     /locus_tag="ACHFOB_000328"
     CDS             complement(6493..7329)
                     /locus_tag="ACHFOB_000328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPOR domain-containing protein"
                     /protein_id="HFN5799163.1"
                     /translation="MENQKNEFDDIILEKSNKSEKVKKILLRVIALVILFLAIMIVMK
                     LINGSGDENTQNQSVLPSEPIATQDNNNDTSFESMPITDNTSAEDQFEALRKQFQDEQ
                     NTTQNTTTSSSNNNDTTNFAMPDQEVPAEPTATTSENTTPQASTPKQEVTQTAKPKEE
                     AKKQTAVKKEKESTKQIPKKEQNANDLFKNVDAKPVHSSGLASGIYVQIFSVSNLDQK
                     SKELASVKQKGYDYKLYKTTVGGKEITKVLIGPFEKADIAAELAKIRKDIAKDAFSFT
                     LK"
     gene            complement(7343..7888)
                     /locus_tag="ACHFOB_000329"
     CDS             complement(7343..7888)
                     /locus_tag="ACHFOB_000329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1882 domain-containing protein"
                     /protein_id="HFN5799164.1"
                     /translation="MISPMDMSLIKIIGDHYYIRRDKIVNKITHRGRLFFDKFERVDA
                     PLNLNVMREHAAKKIVVAHDLITKDNKVENIVFDYNGFNAERFYHRAQLILREEGFIN
                     FTAYKTKTPGHLHLYIHKGHTALNEGYSLASKLSMMFASKMPVEWKVFPSMDVPREFN
                     ILILPYEVYQKERGSSWSKHM"
     gene            complement(7885..9129)
                     /gene="glyA"
                     /locus_tag="ACHFOB_000330"
     CDS             complement(7885..9129)
                     /gene="glyA"
                     /locus_tag="ACHFOB_000330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HFN5799165.1"
                     /translation="MSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGS
                     ILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYA
                     ALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKE
                     KPKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPHAHVV
                     SSTTHKTLRGPRGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDE
                     WKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAG
                     ITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIVSNYIADILDDINNEKLQ
                     ENIKQELKKLASNFIIYERAMF"
     gene            complement(9126..10631)
                     /gene="lysS"
                     /locus_tag="ACHFOB_000331"
     CDS             complement(9126..10631)
                     /gene="lysS"
                     /locus_tag="ACHFOB_000331"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HFN5799166.1"
                     /translation="MFDNILEQQRIEKAKELKNLGINPYPHFLEKEMSLKTFKDKFSY
                     ILEQVEKRDESINAVVAGRLKLLRIAGKSIFANIEDEDTNLQIYFNKDSVGEELYAIL
                     KKNLEVGDIVLVKGFPFVTKTGEFSLHASEVKLATKAIVPLPEKYHGLTDIEQRYRKR
                     YVDMIMNAEVRKDFLVRSKVVSLIRHFFENKGFLEVETPMMHPIAGGANAKPFVTFHN
                     SLGVERFLRIAPELYLKRLVVGGFEAVFEINRCFRNEGMDLTHNPEFTTIEFYWAYHN
                     YKDLMDLTEELFALLLDKLNLGKTIEFDGKMIDFSKPFERITYKDALCKYGGLDRDLI
                     EDKEKILTKLKVDGFEANEKLELGHLQAELFDNYVEEKLINPTFVIDFPISISPLSRR
                     SDEDSQIAERFELFICGRELANGFNELNDPLDQYERFLKQIEAKNAGDEEACEMDEDF
                     VNALGYGMPPTAGQGIGIDRLVMLLTNKKSIRDVILFPAMRPLKSELKEKE"
     gene            complement(10632..11105)
                     /gene="fur"
                     /locus_tag="ACHFOB_000332"
     CDS             complement(10632..11105)
                     /gene="fur"
                     /locus_tag="ACHFOB_000332"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fur family transcriptional regulator"
                     /protein_id="HFN5799167.1"
                     /translation="MLIENVEYDVLLERFKKILRQGGLKYTKQREVLLKTLYHSDTHY
                     TPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISFGSAGKKYELANKPHHDH
                     MICKNCGKIIEFENPIIERQQALIAKEHGFKLTGHLMQLYGVCGDCNNQKAKVKI"
     gene            complement(11107..11670)
                     /locus_tag="ACHFOB_000333"
     CDS             complement(11107..11670)
                     /locus_tag="ACHFOB_000333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009403 - toxin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HFN5799168.1"
                     /translation="MNFYWFDAFILGFTLLLGLKGIINGLIKEIFGLLGIIGGVFIAS
                     KYATQAAEFIQSTFYKIENQSLAGFAGFLAILIIFWIVCLLAGNFLSKLIKLSGLGFL
                     DRIGGFIFGGAKIFLIFAILVFCVARIDFLNDKLDNFAKNSYTLNLLKETGSFIMNQP
                     LTENSLDHANEKLQDIVSDLNNTQKGE"
     gene            complement(11738..12022)
                     /gene="gatC"
                     /locus_tag="ACHFOB_000334"
     CDS             complement(11738..12022)
                     /gene="gatC"
                     /locus_tag="ACHFOB_000334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA];
                     GO_process: GO:0006450 - regulation of translational
                     fidelity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HFN5799169.1"
                     /translation="MQIDEKLLSKLEKLSALQITKNRNETIVQLSEIVNFVEKLNELD
                     LDSQEITVSTIKGGAPLRIDEIRNSNVIDEVLDCAPKKQEHFFVVPKIIE"
     gene            12166..12744
                     /locus_tag="ACHFOB_000335"
     CDS             12166..12744
                     /locus_tag="ACHFOB_000335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799170.1"
                     /translation="MGLKDNLKAVKNELNTEEQFIENFIKGERFIRKYKFYISAVVII
                     LVAWFAGNFIISKINDYKTKEANEIYANLIQDPSNKNLLEQLKNKNTNLYAIFLLKEN
                     INDFNNTALQNELKQIYSNTQTNTLLKNIIALSLGDKSIFLKNYDKLLEAYKFLEQNK
                     IEEANVLLSQIKENSSLNQITKNLKHYQGITQ"
     gene            12741..13739
                     /locus_tag="ACHFOB_000336"
     CDS             12741..13739
                     /locus_tag="ACHFOB_000336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799171.1"
                     /translation="MKKIFLTLFCLIFLCACGTKRQYFEPKQTDGDLSHNSNLKSKIV
                     DWNLVSAKLSNNTAILKNNISIDKFKLPKNYMLLAYQDGEYFTADNNGNLKIFDNSYN
                     EIYNFQFDASVVGVASNGDDLALVLANNTIVLANRSLGIKFSQTLTSAPAQDSRTANP
                     IFLDNIIVYPTLDGKILILSRNNLQIIKDVVISAENFFNNAIHLSVIGDKLIAATAKK
                     IIVVSPARTLYLDADIKDVALSDDGIFILEKDGTIIKTDYNLRKIAEKKFEFAIFVKS
                     NIYNNYLYIFEKTGYLIKMNLNLDNTQVFKLSEAVDKISFMGNGKFYYGNKILDLL"
     gene            13736..14026
                     /locus_tag="ACHFOB_000337"
     CDS             13736..14026
                     /locus_tag="ACHFOB_000337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tram-like protein"
                     /protein_id="HFN5799172.1"
                     /translation="MIKILEQTIKALKLNLKPYDLSMLTRKKSYICAKDQNNILFMYT
                     GKTKFLMKDALFLENLAQQININNKYFFSMTSLCSKAKNHLEMKGFNIYAAL"
     gene            14013..14642
                     /locus_tag="ACHFOB_000338"
     CDS             14013..14642
                     /locus_tag="ACHFOB_000338"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004594 - pantothenate kinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HFN5799173.1"
                     /translation="MLLCDIGNSNANFLDDNKYFTLSIDQFLEFKNEQKIFYINVNEH
                     LKEHLKNQKNFINLEPYFLFDTIYQGLGIDRIAACYTIEDGVVVDAGSAITIDIISNS
                     IHLGGFILPGIANYKKIYSHISPRLKSEFNTQVSLDAFPQKTMDALSYGVFKGIYLLI
                     KDAAQNKKLYFTGGDGQFLANYFDHAIYDKLLIFRGMKKIIKENPNLLY"
     gene            14761..16107
                     /gene="mqo"
                     /locus_tag="ACHFOB_000339"
     CDS             14761..16107
                     /gene="mqo"
                     /locus_tag="ACHFOB_000339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFN5799174.1"
                     /translation="MSQQEFDVLVIGAGISGAALFYELARYTNIKNIALIEKYNTAAT
                     LNSKGTSNSQTIHCGDIETNYTLEKARKVKRTADMIVKYGLMQNAQNNFMFSHQKMAL
                     AVGDIECDYMKKRYEEFKELYPYVKFFDKAKIKQIEPKVVLGEDCNQDRPENICAMGV
                     ESGEVFTTVDFGKMSINLIEQAQKQNKNTFVAFNQEIIHIEKKDDIFILKTSNHQEYH
                     AKSVVVNAGAHSLYLAHKMNLGMDKSCWPVAGSFYLTKQKLLNGKVYMVQNPKLPFAA
                     LHGDPDLLADMNTRFGPTALVIPKLERYHGLKSVPEFFEALKLDKTVLKVTFNMFKDA
                     TIRNYIFYNYLFELPFVDKSLFVKDAKKIVPSLKASDIYYAKGFGGVRPQVIDKTKGE
                     LMLGEASITETPGIIFNMTPSPGATSCLGNAERDAKLVCNYLGMEFNEDKFSSELL"
     gene            16156..17598
                     /gene="pyk"
                     /locus_tag="ACHFOB_000340"
     CDS             16156..17598
                     /gene="pyk"
                     /locus_tag="ACHFOB_000340"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004743 - pyruvate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0030955 - potassium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HFN5799175.1"
                     /translation="MLKKTKIVATVGPASEKEEILRQMIINGVNVFRLNFSHGTHEYH
                     KKNLDTIRKVAKELHIRIGILQDISGPKIRTGELKEPFELKKGDRLDFYRETILGEKI
                     AQNHYKISINQKSILDMLKIDEYIYLYDGSIRAKVVNIDDQKIETIIENDGFLNSNKG
                     INFPNTKINIDVITQKDKNDLLWGIKNEVDFLAISFVQNAHDIDEVREILAQNNAKIS
                     IFAKIEKFDAVENIDEIIKSSDGIMVARGDLGIEVPYYKVPNIQKEIIQKANNASKPV
                     ITATQMLFSLAKSKTATRAEISDVANAVLDGTDAVMLSEESAVGIDPANAVGIMCQTI
                     IETEKRYPYNKFNDFNDLDNTDKIMRSSAHLATDLNADAIFSLTSSGKSAIKIARYRP
                     NIEIIAVGHSEKTLNSLSIVWGVNPAILVNKSNELTELLKDSVRSSVEKGFMDEDKCY
                     LLTAGFPTGVEGTSNLIRILNKEQIAYYLQ"
     gene            17696..18331
                     /locus_tag="ACHFOB_000341"
     CDS             17696..18331
                     /locus_tag="ACHFOB_000341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799176.1"
                     /translation="MQVNTFSNIASMAQTQVSNKKADDAKENTKDKNVQSANSSKDVD
                     KNTLEKLNALGGKGITQIYLVQFQQQTMNAVIGSSNAQTGLDSLLNGANLDTAKSILT
                     NIDFASLGYSGKNPLDMNTDELQQLVSEDGFFGVENTANRIADFVIKGGGDDVEKLKK
                     GLEGMKKGFEQAEKMWGGELPQISQNTIDAALKKVSDRIDELGGKTLDLQA"
     gene            complement(18362..20824)
                     /gene="pflB"
                     /locus_tag="ACHFOB_000342"
     CDS             complement(18362..20824)
                     /gene="pflB"
                     /locus_tag="ACHFOB_000342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility protein PflB"
                     /protein_id="HFN5799177.1"
                     /translation="MAEQEDIILEKPEDGLNQPRLDESLEGFKGQEGQAPEDEEFASL
                     PEELPQENSESGFKFTRESAPEDVSTFEEVESQEPTPWYKDRKFMSLVGLSLGIICIL
                     VFTLFYLTFSEGKIKPDIIASKPLEQPVVMPDESYKYNDMQRIDGMIQKANALYLKGE
                     VEQALKVYEQVAVYNESLSNYNLGVSQMNENKFQEAFESFKKAIANGENQSVAAINAA
                     VCALKLNDKEKFRYYIDLAQVYLPKEGKSKLYDYYLSLINYYKGYYPEALQMLQRTDM
                     EPYSDVAKYLSAKIYAKMDFDSKAIQQLNSQGNFESSLSLGLLYARIGEYAKAKVALS
                     TAMKIERDFNQSLAALTLVDIKTGNYQDMLARLQNSYDNDKDRYKILDAYKIQVRLNK
                     DLFNIAVAQNSFSKDLLKKQKDQFDLLFYFAPYQVFDSKQAALYIKKANVTDFVDDSA
                     DAGVYLNTSKALSSTNVKIANIINYALNQKLRLANQEFQKLIKDYPEHSILHYNLALT
                     YAQMQNYELAYKHFSSSYHLNPKNYLAGAFAMFCAKLIDIDTTKLYNEILDNIAADSN
                     FKANMQKSMLFLVNNNYISMLPYLDETKKDTPLSLIFEAIVAKNNNLNNQVDVKIAKL
                     RSELPEDILANILYFNSLNSNLNIKEYAQNAQIHFKNLKLDYRSVFGGPNIAREFYVN
                     LMHIAGLLNLERQKIKELINVSGAKDEGILQTLAYLDIFAQQYEEAYALYNSLIDDYG
                     AKDTKTLFLAAVAAIGANNPNSAIALLQLSKLTDKNNKESKAALGMLYQEVKNYEAAI
                     SQYKTLPNNFKSEFFTFDINNN"
     gene            complement(20834..22069)
                     /gene="serS"
                     /locus_tag="ACHFOB_000343"
     CDS             complement(20834..22069)
                     /gene="serS"
                     /locus_tag="ACHFOB_000343"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HFN5799178.1"
                     /translation="MLDLKNLQNNFDEVAKKLKNKKVDENILKKLAELFASLKKEKTA
                     LEEFQAFQNKFSKELATAEDKESLKAKLSENKSKINEQSAKVNALENELEEIAHAIPN
                     IPDECVPVGEDEDENVELKKVLNPSSFDFTPKEHFELGESLNWLDFVRGVKISQSRFC
                     VLKNEGALLSRALVNYMIDFNRSRGFEFVNVPFLVNGATMFGTGQLPKFKEDMYKVDD
                     EDLYLISTSEIPVTNLYSGEILASETLPIKMTCYSACFRKEAGSAGRDTRGIIRQHQF
                     EKVELVSITKPEQSDSVFNEMLECASDLLSSLGLAHRHLMLCTGDLGFSAAKTVDLEV
                     WLPGQNKYREISSVSNCRDFQARRAKIRYKNEQGKNELVHTLNGSSLAVGRTLVAIME
                     NYQDKEGKIHIPDVLKKYF"
     gene            complement(22080..23039)
                     /gene="trpS"
                     /locus_tag="ACHFOB_000344"
     CDS             complement(22080..23039)
                     /gene="trpS"
                     /locus_tag="ACHFOB_000344"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004830 - tryptophan-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006436 - tryptophanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HFN5799179.1"
                     /translation="MRVLTGLQPSGDLHIGNYFGAIKQMVDAQEKSQMFMFIANYHAM
                     TSSQDGEKLKQNSLKAAAAFLSLGIDPQKSVFWLQSDVKEVMELYWILSQFTPMGLLE
                     RAHSYKDKVAKGLSASHGLFSYPVLMAADILLFDTQIVPVGKDQIQHVEIARDIALKV
                     NNEWGEIFTLPEAKVNEEVAVVVGTDGAKMSKSYQNTIDIFSSEKTLKKQISSIVTDS
                     TALEDPKDFKNCNVFKIAKLFLDEAGQKELQIRYEKGGEGYGHFKMYLNELANAYFKE
                     AREKYNELLEKPSHLKEILDFGATKARKIAQEKMQKIYEKIGL"
     gene            complement(23036..23533)
                     /gene="aroK"
                     /locus_tag="ACHFOB_000345"
     CDS             complement(23036..23533)
                     /gene="aroK"
                     /locus_tag="ACHFOB_000345"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HFN5799180.1"
                     /translation="MMKAKNIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFN
                     QKVSEIFEQKGENFFREQEQKMSDFFSSCEKTCIATGGGFVNVSNLEKAGFCIYLKAS
                     FEYLKKRLDKDEISKRPLFYDEIKAKKLYNERLSKYEQKANFILNIENKNIDELLSEI
                     KKVIK"
     gene            complement(23520..24902)
                     /gene="der"
                     /locus_tag="ACHFOB_000346"
     CDS             complement(23520..24902)
                     /gene="der"
                     /locus_tag="ACHFOB_000346"
                     /EC_number="3.6.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HFN5799181.1"
                     /translation="MQSIILIGKPNVGKSSLFNRMARQRIAITSDISGTTRDTNKTQI
                     HIHSKKAMLIDSGGLDESDELFKNVKKNTLKVAKESDIILYLVDGKLAPDDEDRQFFY
                     SLKKLGKPIALVVNKVDNKKDEERAWEFANFGVKEIFNLSVTHNVGLDELYEWLEKFL
                     HEEFLIPDEEENLEDFLEHYEEGKEFQFKEVDQNHIRVGIVGRVNVGKSSLLNALVKQ
                     ERSVVSSIAGTTIDPVNESVVHKDKVIEFVDTAGIRKRGKIQGLERFALNRTEKILSH
                     SQIALLVLDAHEGFNELDERIAGLVAKHYLGVIIVLNKWDKSEMDFDKTVKELRLDRF
                     KFLAYAPVISVSALSGKRVHVLLDKILQIFENFTQKIQTSKLNTLIENATRAHPLPHD
                     YGKLVKIYYAVQYDLAPPKIALIMNRPKALHFSYKRYLQNQIRKEFNFEGVPLVIASR
                     KKGSKENDES"
     gene            25003..25935
                     /locus_tag="ACHFOB_000347"
     CDS             25003..25935
                     /locus_tag="ACHFOB_000347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN5799182.1"
                     /translation="MLKVIKHNLGIYFMILACLDFALMGACAKILSKEMSSIEIMFFR
                     NIIGIFFIVYLLKRSKAHKEGGHFWLLVFRGVVGTLSLYMFFYNVSNITLGGAFAFQK
                     TAPIFITLIAFVVFKENIGIKGWIGILIAFGGVLLIAQPWAHNLNHSGFDLKNSVIGI
                     TSGFLAALALTSVRELRKSYTTEQIAFSFILLGTLMPLISMISAEFFEPQHLDSLHLD
                     FILAPFVMPSLTAWLIIAIMGTLGTIYQIHVTKAYGIAKQAGVVAGVSYLDVVFSMIV
                     GIILGDSLPSAMVFLGIIGIIFGGLILVKNKGKK"
     gene            25932..26747
                     /gene="kdsA"
                     /locus_tag="ACHFOB_000348"
     CDS             25932..26747
                     /gene="kdsA"
                     /locus_tag="ACHFOB_000348"
                     /EC_number="2.5.1.55"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002827952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008676 - 3-deoxy-8-phosphooctulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-8-phosphooctulonate synthase"
                     /protein_id="HFN5799183.1"
                     /translation="MKKMILIAGPCVIESKDLIFKVAEQLKNFNENPNIEFYFKSSFD
                     KANRTSINSFRGPGLEEGLKILQSVKDEFGMKILTDIHESNQANPVSEVADVLQIPAF
                     LCRQTDLLVAAAKTKAKVNIKKGQFLNPSDIKYSVKKALQTRGIEDEGYEAAQKNGVF
                     VAERGSSFGYGNLVVDMRSLVIMREFAPVIFDATHSVQMPGAAGGSSGGKSEFVEPLA
                     RAAAAVGIDGFFFETHINPCEALCDGPNMLNLTRLKNCVNTLLEIQNIIKENK"
     gene            26744..27208
                     /gene="ribE"
                     /locus_tag="ACHFOB_000349"
     CDS             26744..27208
                     /gene="ribE"
                     /locus_tag="ACHFOB_000349"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HFN5799184.1"
                     /translation="MNIIEGKLNLDSNTKIAIINARFNHIITDRLVEGAKDAFLRHGG
                     KEENLSLILVPGAFELPYALKKAIESKKFDAICCVGAVIRGSTPHFDYVSAETTKGIA
                     NVSLNHNIPVSFGVLTTDTIEQAIERAGSKAGNKGFEAMTTVIEMLNLSKEL"
     gene            27208..27606
                     /gene="nusB"
                     /locus_tag="ACHFOB_000350"
     CDS             27208..27606
                     /gene="nusB"
                     /locus_tag="ACHFOB_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HFN5799185.1"
                     /translation="MATRHQVRQSVISLLYAFELNSQNNVFVDEILDEKKIRNEQKNF
                     TLNLYHGILDNLNNIDETLNSFLNDNQITALGHVERAILRLGAYELLFTDTPSAIVIN
                     EAIELAKELANDNSPKFINGVLDALIKAKK"
     gene            27603..28280
                     /gene="pyrF"
                     /locus_tag="ACHFOB_000351"
                     /pseudo
     CDS             27603..28280
                     /gene="pyrF"
                     /locus_tag="ACHFOB_000351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343818.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0044205 - 'de novo' UMP biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
     gene            28338..29231
                     /gene="msrP"
                     /locus_tag="ACHFOB_000352"
     CDS             28338..29231
                     /gene="msrP"
                     /locus_tag="ACHFOB_000352"
                     /EC_number="1.8.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016667 - oxidoreductase activity, acting
                     on a sulfur group of donors [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-methionine-sulfoxide reductase catalytic
                     subunit MsrP"
                     /protein_id="HFN5799186.1"
                     /translation="MIITPENLYKKRRDFLKLGAGALISSSVLASKLSALNFTSDTNP
                     NKLEISDEELATNYVNFYEFSTDKKKAVSLAQNFNTQNWKIDISGEIEKPLTLSMEDI
                     LKFPLEERIYRFRCVETWSMVVPWVGFELRRLIEMAKPTSEAKFVKFTTLLDKSQFPD
                     QDALFPTIDYPYVEGLRMDEAMHPLTLLAVGMYKKALKPQNGAPIRLVVPWKYGFKSI
                     KSIVKIEFTKEQPKSTWESYAPSEYGFYANVNPNVSHPRWSQANERALGDFFTKPTLM
                     FNGYEKEVASLYKNMDLKVNF"
     gene            29231..>29405
                     /locus_tag="ACHFOB_000353"
     CDS             29231..>29405
                     /locus_tag="ACHFOB_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HFN5799187.1"
                     /translation="MQTKYFKFLAYFSFIISLIYGFYHIIKAFDFVKEAYIYTGIFAL
                     IFLNLSLLFSLLKF"
BASE COUNT        10268 a         5130 c         3997 g        10010 t
ORIGIN      
        1 gaaataaaac ctgatttaaa aagatttaaa atacaaattt gagcattttg catactaaaa
       61 atatccactc ttaaatcaat ttttttgcaa agctcttgaa attcttttaa gagaaaatat
      121 ctttcataat tgtctttatt gacacttaaa ataatcgcac actcggctgt atcaagtttg
      181 cttttatctt gaaatttagc atcaaaattt aaaaattgga gttcattttg ccaaattttt
      241 tggaataatt ctttcacaat cttcccctta aaaaggggaa agatttattt atttctttga
      301 gcgacaagtt gtcttctcat ataagcgatt ttactttgta aaggtaattc tttagggcaa
      361 ttatcttcac aagcaagcaa tgacatacaa ccaaaaacac catcatcatc gcctactaat
      421 tcataaaaat cttccacact tctatggtca tgcggatctt gtaaatatct agctgttctt
      481 aaaagccctg tagcagctat gaaatttggg cgcataagtt tagttgcaca agaagctaca
      541 caaattccac actctataca acgatcaagt tcaaaagttt catccgcaac ttctggctca
      601 atgcgttctt caagtttaga aatatcagtt tctttttcat tatgcaccca gctttcaaca
      661 cgcttacaca tgtcttcaaa ccactcgcct gtattcacgc ttaaatcttt aatatgccta
      721 aatgcaggca taggcataag ctctatcact ccatcaggat aatctttagt caaagtttta
      781 caagcaagtt ttggcactcc attaatcatc attgcacaag atccgcaaat ccctgcacga
      841 caaacaaagt caaaactcag atctgcatcc attttttcac ggatcaaagt caaacataca
      901 aaaaccgtca taaaaggagt ttcttcaagc tcataagtca caaaatgtgg tttagaaatt
      961 ttgcttaaag gattgtattt aaatgccttt attgtcaatt ttctactcat aatcaactcc
     1021 tattctttgg tttggtgctt tatatttagc ttgcaattca taaggcatta aggcgttttg
     1081 aatttcataa cgacctttgc cttcagcttc cattttttca cggatagcat ccacttcagc
     1141 ttggcgtttt tcacttaaag gattttctat aatatttcct ttagcaccgt atccacggaa
     1201 tgctggtgga atttccattt tcataatatc aagctcttcg tattctatgc gtggtaaggt
     1261 ttcgccttct acccaaaaag tattggttct tttcatccaa tttaaatcat ctctttttgg
     1321 ataatcttcc ctataatgcg ccccacgact ttctgttctt aaaagcgctc cataagctac
     1381 gcaaagtgct atttttaaca ttcttggcac tctatacgct tcttcaagct ctggatttgc
     1441 acaatcaagt tctttacaat gtactttaac gtcttgagaa tctttataaa gtttttcaag
     1501 ttcatctact gcttctttca aaccttcacc tgttctaaag atggccacct tatcccacat
     1561 gatttctttc attctgtttt tgatttcaaa aacattatgt ttaccttctt tatctactaa
     1621 agattttaaa tattgatact ctttagttaa gaagtctttt actacatttg tgtcaattac
     1681 ttcaccatta tttttacaat aatctgcaaa ataatctccc actatcatac ctgctacaac
     1741 agtttcagca catgaatttc cacctaaacg attaaatccg tgcatatccc agcaagctgc
     1801 ttctccacaa gcaaaaagtc cgtttaacca ttgactttca cccgttggtt tagttctaat
     1861 tccacccata gaataatgct gcattggaag aactggcgcc caaccttttg gaccctcatc
     1921 tgctggatca ataccattaa aagttttaca aatatcttgt acatcgcgga gatttttttc
     1981 cacatgagct cttccaagta tagaaatatc aagccataaa tgatccccat aagggctttt
     2041 tacacctttg cctttacgaa tatgttccat cattctacga cttaccacat cacggcttgc
     2101 aagttctttt ttctctggtt cataatcagg cataaaacga tatccatcca catcgcgtaa
     2161 aattccacca tcaccacgac agccctcagt aagcaaaata ccgcttggca caataggagt
     2221 tggatgaaat tgcactgctt ccatatttga aagtctgcaa agccctgttt caagagcgat
     2281 ggctgcacct gttccttcac aaattaccgc atttgtagtt tgtttataaa ttctaccata
     2341 gccccctgtt gctatcatgg ttcctcttgc aatataagca atgagttgtc cattagttaa
     2401 atctctagcg atcacaccta agcatttttt accatcatgg ataattctta ctgcttccat
     2461 tctatcaata atttttactt gatgtttaat agcttcattt gctacaccat aaagcataca
     2521 atgccctgtt gcatctgcga tatagcaagt tctccatttt ttagttccac caaaatctct
     2581 agcattaata agcccgtgcg cttcttcttt ttcttcaatc acagtttttt gtgcattgat
     2641 tacaacagtt cttggacctt tagtaactct agtccaaggc acaccccaag ccgcaagctc
     2701 acgcactgct tttggcgcag tttgagcaaa cattcttgct acttcttgat cacagcccca
     2761 atcacttcct tttactgtat ctgcaaagtg aagatcttca ttatcaccct caccttttgc
     2821 cccatttgct aaacttgcct gcatacctcc ttgcaccgct gcagagtgag aacgcttcac
     2881 tggacaaata cttaaaagtg ttacactttg gccactcttt gctacttcaa tagccgctct
     2941 aagacctgct aatcctccgc ctattactaa agcatcacta tattgtatat tcataatttg
     3001 ctccattgta gttttttatc atcgcagtag tttgggtttg attttggtag ttttcataac
     3061 ctatttttat aaatgctgca agacttaaca cacctaaaac taggaagaaa atactgatta
     3121 tccatttagc agttttaagc tttttgcgac tttcttttac attttttcct tcaaaccaac
     3181 cccatttaac acaaagtcta taaagcccta tacttccatg aagttcaaca cagactaaaa
     3241 gaacagcata aaaaagccac ataaaatgac ttacaaccct atctcctgac atatcgccgc
     3301 tgattttatc tgcattggtt acaataaaaa taagatgagc agaacctaag aaaaacataa
     3361 taaaacctgt aaaagcttga acccaccata acgaagtatc gctgtgattc atttttttac
     3421 tgtgtgttct tagtatttga tactgacggt aattaatagg aaattttctc attgcaagta
     3481 aagcatgaac gaaaaaaacc actaaaacac aggcggctaa aaatgaagta agataactca
     3541 taacaggatt atcgtaaaca aattttaatt ctaaaaaatg cactacagaa ttaaaaaaat
     3601 cctcactgac taaaattgta gaaacaaaaa gcatatgcac ccacataaaa agacctaaaa
     3661 aaagccctga agcactttgg ataaagtcta atttcgcagg cattttactt tttttgccct
     3721 caatgctctt acccaaataa ccttcgataa gctcacgcat ctttactcct ttgtaaaaag
     3781 aaattaaaaa aaatccattt cattatatta caaaagtctt taagatagat taaatattta
     3841 cttttttaaa ctttatacaa atataaacta acaaagctgt tataaacatt ataaaactta
     3901 aaatttgccc catactcata ccccataaaa caaaacctat accaaaatca ggctcgcgat
     3961 aaaattcaca tataaatctt gccaatgaat aagcaccagc atacacaaga atcaattccc
     4021 cttgaaagct ttgcttaaat cttgctaaat aaactataat aaaaacaaca ataccttcta
     4081 aaaatgcttc ataaagttgc gatggatggc gcaatactcc atcaacataa attccccaag
     4141 gcacatttgt aatgcgacca aaaagctctt gatttaaaaa atttcctata cgaccaaaaa
     4201 cataagccaa tggaacactt aaagcaacca aatcaagaaa aatccaagga tttgttttat
     4261 attttttaca aaacaataaa gtagctatca aaaatcctat aattgctcca tgataactca
     4321 tacctcgaat acctacaaat tcaccattaa tataaggatt aaaaatttgc caaggatgag
     4381 taatataata catagtattt gcatcataaa tcaaaatata tccaagtctt gcacctaaaa
     4441 taacccctat ttcaacccat ataaaataac tatccaaatg tttttcatta atgtctagtt
     4501 gaaattttct tacaaaaaat ttagccaaaa gcaaagccaa aagcaaagct ataacataca
     4561 taatgccata ccaatgcacc tttaaaccaa agatgctaaa agctataaca ttaaaatttg
     4621 aataaatatg ctgccaaaat tccatatatc tttcctaatt ttcttttata aaaatataac
     4681 aaaaaaactt taacttgcta taattaacac aaacacatta aataaaggta aaaaatgaaa
     4741 aaatatattt tacttgctag tagtatgtta attttagcag cttgtggggg tacaagtagt
     4801 aattttgtca atgtttctat gccaaatttt aaaccccaag ttccaacaaa ggttgaacct
     4861 attaattctg gagtaagcat tgctcttgag cctattaata tagaacaaaa taacaattat
     4921 tctgattatt ttgaaaattc agtgcttaaa attcgcatag aaaaagaaat tgatctttta
     4981 aaacaaaatt tagaagagca gatcaaaacc atcgctcagc taaaaggcta taaaatagtt
     5041 actactaatc cagactacac tcttaaaagt tcaatcagta tttatacgga agaaaaaaat
     5101 gcacaaaaaa caagcaattt tatgagtgga gattatgtaa aatccaattt aggtataaat
     5161 tttaaaggta aaatagattt tatagatgca cacaatccac aaaattcaac caatctttca
     5221 agtagtacta aactagattc tttagttgca cttaactatc ctattaaaaa tgatgatggg
     5281 gttaatatgt ttaaaactac tatctccact gtaccaactc aactcaataa aggtttagag
     5341 caacctgctt ttgaaattga taaaagtttt ttagcttttt ataaaaatac attaaataca
     5401 ctttataaca atctaccaaa agcaacagac ataggcaaaa ctatacctaa tacaaatagt
     5461 ggttttaata gttttgatgg cgatgctacc tttgaagaaa gcttacctca aacaaattct
     5521 aatcaaaata atacaattga aaacacgcct acacaaaata ttcctacaaa tccatcttca
     5581 acaaatcaaa ataatcaaag taaaaatcaa gatggggtag aaatatttga atgataaaac
     5641 ttgtgagaaa attaaacttt ctcacacaaa aaataagatt ttcttataca aaaaaataac
     5701 tatcattcta ctttaaaatc aatgcctgtt gcattgcatt ttttatcatc tctcttttat
     5761 ctcgtatttc aaaaaaaagc tcaaaagcaa aaaccccttg ccataaaagc atatcaagcc
     5821 catctttaat ttttaaatga tactctttac acaatctata aaaaggtgtt tctctgccat
     5881 aaattacctc aaaagcaaat ttagctttag gtaaaattcc atctaaaagc tctctatcac
     5941 aaggtaaatt ttcatctttt aatccagcag aagttgaatt tacaaccaaa tcaaagtcaa
     6001 aatcttgcaa gtttttataa agataagttg gataagctaa gaaatcttta aatctttctt
     6061 tactacgatt agctatatac acttctacgc ctttttgttt taatgcataa gcaagcgcca
     6121 aagctgtacc tccagcaccc aaaatcaaag ctttttttat attatcaaaa tccttaatag
     6181 cttctaaaaa acctaaagca tcagtattat aagcgtaaat tttatcttct tttaagcata
     6241 aagtatttgc agagccaata tttctagcaa aatcatcctt cacatcagca atatctaaag
     6301 ctttttcctt aaaaggcaaa gtaatattag ctccactaag tcctaattta aaaaaatctt
     6361 ctcttaaaca gttagcattt cttaaatgat agcgtgtata aatgctatca agtcctaagg
     6421 ctttgatagc attattatgc attctaggcg atttagagtg agaaatagga tcgcctataa
     6481 ctgctaaaaa tttcatttta aagtaaaaga aaaagcatct tttgcaatat ccttacggat
     6541 tttagcaagt tctgctgcaa tatctgcctt ttcaaatggt cctattaaaa ccttggtaat
     6601 ttctttacct ccaactgtag ttttataaag tttataatca taaccttttt gttttacaga
     6661 agcaagttct tttgattttt gatccaaatt acttactgag aaaatttgca cataaatacc
     6721 cgatgctaaa ccacttgaat gtacaggttt agcatcaaca tttttaaata aatcatttgc
     6781 attttgttct tttttaggga tttgttttgt actttctttt tcttttttta cagctgtttg
     6841 tttttttgct tcttctttag gttttgcagt ttgtgttact tcttgtttag gagtacttgc
     6901 ttgtggagtg gtattttctg aagtagttgc tgtgggttct gctggaactt cttgatcagg
     6961 catagcaaaa tttgtagtat cattgttatt tgaactagag gttgttgtat tttgagttgt
     7021 attttgttca tcttgaaatt gttttcttaa tgcctcaaat tgatcttctg ctgaagtatt
     7081 atctgtaatt ggcatacttt caaaagaagt atcattgtta ttgtcttgag ttgctatagg
     7141 ttcacttggc aatacacttt gattttgcgt attttcatca ccactaccat taataagctt
     7201 cataactatc atgatagcta aaaacaaaat aactaaagca ataactcgta aaagaatttt
     7261 ttttactttt tcacttttat tacttttttc taaaataata tcatcaaatt catttttttg
     7321 attttccata atttgtcctt tcttacatat gcttagacca agaacttcct cgttcttttt
     7381 gataaacctc ataaggcaat attaaaatat taaattccct aggtacatcc atactaggaa
     7441 acaccttcca ttctactggc attttacttg caaacatcat tgaaagttta gacgctaaag
     7501 aataaccttc gtttaatgcc gtgtgtcctt tgtgaatata aagatgtaaa tgtcctggag
     7561 ttttagtctt ataggctgtg aaatttataa aaccttcttc tcttaaaata agttgtgcac
     7621 ggtgataaaa tctttcagca ttaaaaccat tataatcaaa gacaatattt tctactttat
     7681 tatcttttgt tattaaatca tgagcgacaa caattttttt agcagcgtgt tctctcatga
     7741 catttaaatt taaaggagca tcaactcttt caaatttatc aaaaaataag cgacctctat
     7801 gtgtaatttt atttacaatt ttatcgcgtc ttatataata atgatcgcca attattttaa
     7861 ttagcgacat atccattggt gaaatcaaaa catagccctt tcataaataa taaaattact
     7921 tgcaagtttt tttaattctt gtttaatatt ctcttgtaat ttttcattat taatatcatc
     7981 taaaatatct gcaatataat ttgacacaat ttccatttct ttttctttaa aacctctggc
     8041 agtaagcgct ggagttccaa gtcttaatcc acttgtgata aaaggacttc taatctctcc
     8101 tggaacggta tttttatttg cagtaatacc tgcatttcca agagctaaat ctgcatcttt
     8161 tccactaaat tcacgatcta aaaaactcat taaaacaagg tgattatccg ttccatcgct
     8221 aacaagttta aattttctat ccattaaaac attagctaaa acttgagcat tggttcttac
     8281 ttgttttgca taaactttcc actcatcgct aagattaaat ttaaatccta ctgcttttgc
     8341 agcaattaca tgcatcaaag gaccaccttg aatacctgga aaaatggcag aattaatttt
     8401 tttagcaagc tcttcatcat ttgtcataat aataccacct cttggaccac gcaaagtttt
     8461 atgtgtggtt gagcttacta catgagcgtg cggaaaagga cttggatgct cgcctgccac
     8521 aacaagacct gcaatatgtg ctatatcagc aaaaagatag gcacctattt catcagcaat
     8581 ttctctaaat ttagcaaaat caatcactct tgcataagca ctagctccac aaactattaa
     8641 ttttggcttt tctttcttag cgatttctct tactttttca taatcaattc ttccatcaag
     8701 ttctacgccg taaaaacaac tttcgtacat tttacccgaa gaacttactt ttgcaccatg
     8761 agttaaatgt ccaccatgac ttaaatccat tcctaaaatt ttatcacctg gattaatcaa
     8821 agccgcataa acaccttgat tagcttgaga acctgaatta ggctgaacat tagcaaattt
     8881 acaattaaaa agttttttac atctttcaat agctagagtt tcaatctcat caacaaattc
     8941 acaaccacca taatatcttt tacctggata accttctgcg tatttgttcg tcaagatact
     9001 tcccataact tccattactt caggtaaagt gaaattttca ctcgctatca tttcaagacc
     9061 ttcgcattga cgctctaact ctttgtttgt taaatcaaaa atttctttat caaacatttc
     9121 taaactcatt ctttctcctt tagttctgat tttaatggac gcattgcagg aaacaatatc
     9181 acatctcgaa tagatttttt atttgtcaaa agcataacaa gtctatctat acctataccc
     9241 tgccctgccg ttggaggcat tccataaccc aaagcattta caaaatcttc atccatttcg
     9301 caagcctctt catcgcctgc atttttagct tcaatttgtt ttaaaaatct ctcatattga
     9361 tcaagaggat cattaagctc attaaaacca tttgccaatt ctcttccaca aataaacagc
     9421 tcaaatctct cagcaatctg agaatcctca tcgctacgtc ttgataaagg acttatggaa
     9481 ataggaaaat caatcacaaa agtaggattg atcaattttt cttccacata attatcaaaa
     9541 agttcagctt gtaaatgtcc aagttcaagc ttttcattcg cttcaaaacc atctactttt
     9601 aatttagtaa gaattttttc cttatcttca attaaatccc tatccaaacc accatattta
     9661 caaagtgcat ctttgtaagt aattctttca aaaggtttag aaaaatctat catttttcca
     9721 tcaaattcta ttgtttttcc caaattaagt ttatctaaaa gtaaagcaaa aagttcttca
     9781 gttaaatcca ttaaatcttt ataattatga taagcccaat aaaattctat agttgtaaat
     9841 tcaggattat gggttaaatc cataccttcg tttctaaaac aacgattgat ttcaaaaact
     9901 gcctcaaaac cacccactac aagtctttta agataaagtt ctggagcaat tcttaaaaat
     9961 ctttctacgc ctaaagaatt gtgaaaagtt acaaaaggct tagcgtttgc tccacctgca
    10021 atcggatgca tcataggagt ttctacttct aaaaagcctt tattttcaaa aaaatgacga
    10081 atcaaactca ccactttaga acgcactaaa aaatcttttc taacttctgc attcattatc
    10141 atatcaacat aacgtttacg atatctttgc tcaatatctg ttaatccatg atatttttca
    10201 ggtaaaggaa caatagcttt tgtagcgagt tttacttcac ttgcatgcaa actaaactca
    10261 cctgttttag ttacaaaagg aaaaccttta accaaaacaa tatcacctac ttctaaattc
    10321 tttttcaaaa tcgcataaag ttcttcacct acactatctt tattaaaata aatttgcaaa
    10381 tttgtatctt catcttcaat gtttgcaaaa atcgatttcc cagctatacg caaaagtttc
    10441 aaacgtcctg caacaacagc attgatactt tcatctcttt tttcaacttg ctctaaaata
    10501 taagaaaatt tatccttaaa agtctttaaa gacatttctt tttctaaaaa atgaggataa
    10561 ggattgatcc ctaaattttt taattccttg gctttttcta ttctttgctg ctctaaaata
    10621 ttatcaaaca tttatatttt tacctttgct ttttgattat tacaatcacc acaaacacca
    10681 taaagctgca tcaaatgccc tgtaagttta aaaccatgtt cttttgcaat caaggcttgc
    10741 tgtctttcta taataggatt ttcaaactct ataatttttc cgcaattttt acatatcata
    10801 tgatcatggt gaggtttatt ggcaagctcg tattttttac ctgctgaacc aaaagaaatg
    10861 gaagttacca tttctgcttc ttcaagcaaa tttaaagtac gataaacagt tgcaattcct
    10921 acatttaaat cgggttcagc ttgtttgatt tccatatata aactttcggg tgtgtaatga
    10981 gtatcactgt gataaagagt ttttaaaagt acttctcttt gcttggtata tttaagtccg
    11041 ccttgtctta atattttttt aaatctctca agtaaaacat catattccac attttctatc
    11101 agcatatcac tccccttttt gagtattgtt taaatcactt acaatatctt gcaacttttc
    11161 attagcatga tctagactat tttctgttaa aggttgattc ataataaaag atccagtttc
    11221 tttaagcaaa ttcaaagtat agctattttt agcaaaatta tctaatttat catttaaaaa
    11281 atcgattctt gctacacaaa aaactaaaat tgcaaaaatt aaaaagattt ttgccccacc
    11341 aaatataaag ccaccaatac gatctaaaaa acctaggcca cttaatttga tcagcttaga
    11401 aagaaaatta cctgccaaca aacaaactat ccaaaaaata attaatatgg ccaaaaatcc
    11461 agcaaatcca gctaagcttt gattttctat cttataaaaa gtactttgta taaattcagc
    11521 cgcttgagtt gcgtattttg aagcaataaa aacaccacca ataataccca aaagtccaaa
    11581 aatttctttt atcaaaccat tgataatacc cttaagccct aaaagcaagg taaatcctaa
    11641 aataaaagca tcaaaccaat aaaaattcat ttcaatcact ctctgatttt ttttgtttta
    11701 aatttattct acaaataagc actaaatgct aagttaatca ttctatgatt ttaggaacaa
    11761 caaaaaaatg ttcttgtttt tttggagcac aatctaaaac ctcatcaata acattgctat
    11821 ttcttatctc atcaatcctc aaaggagctc caccttttat agtactcaca gtaatctctt
    11881 gggaatctag atcaagttcg tttaattttt caacaaaatt cacaatttca cttaactgta
    11941 caatggtttc atttctgttt tttgttattt gtaaagcact taatttttca agcttgctta
    12001 ataatttctc atctatttgc atttcttaaa ccttaataaa aaagttaaaa ttttgaaaat
    12061 tatatcataa aaagctttaa attgtttagg atattttgca atttatatga tacaatacca
    12121 taatttttct atacaaaaat aaaaatattt tttcaaggat aaattttggg actaaaagat
    12181 aatttaaaag ctgttaaaaa tgaacttaac acagaagaac aatttataga aaattttatc
    12241 aaaggagaga gatttatacg caagtataaa ttttatatat ctgctgttgt gataatttta
    12301 gttgcttggt ttgctggaaa ttttataatc tcaaaaataa acgattataa aacaaaagaa
    12361 gcaaatgaaa tttatgccaa tctaatacaa gatcctagca ataaaaatct tttagaacaa
    12421 cttaaaaata aaaataccaa tctttacgct atctttttac taaaagaaaa tattaatgat
    12481 tttaataata cagctctcca aaatgaacta aaacaaattt acagtaatac tcaaacaaac
    12541 actttactta aaaatattat cgcattatct ttaggggata aatcgatatt tttaaaaaat
    12601 tatgataaat tattagaagc ttacaaattt ttagagcaaa ataaaatcga agaagctaat
    12661 gttttacttt ctcagataaa agaaaattca agtttaaatc aaataactaa aaatctcaaa
    12721 cattatcaag gcattacaca atgaaaaaaa tatttttaac actattttgt ttaatatttc
    12781 tatgtgcttg tggcaccaaa agacaatatt ttgaaccaaa acaaaccgat ggagatttaa
    12841 gtcataatag caatttaaaa agtaaaatcg ttgattggaa tctagtttct gcaaaactta
    12901 gcaataatac agctatctta aaaaataata tctccataga caagtttaaa cttcctaaaa
    12961 attatatgct tctagcttat caagatgggg aatattttac tgcagataat aatggaaatt
    13021 taaaaatttt tgacaattct tataatgaaa tttataattt tcaatttgac gctagtgttg
    13081 taggagtagc ttctaatgga gatgatttag cccttgtact tgcaaacaat actatagttc
    13141 ttgcaaatcg ttctttgggt attaaattca gtcaaaccct aacctcagct ccagcccaag
    13201 acagtcgtac cgctaatcct atatttttag acaatatcat cgtttatcca acgctagatg
    13261 gtaaaatttt aattctttca agaaacaatc ttcaaatcat taaagatgtg gttatttcag
    13321 cagaaaattt tttcaacaat gcaatccatc taagtgtaat cggagataaa cttatagcag
    13381 caacagctaa aaaaatcatt gttgtaagcc ctgctagaac tctttatctt gacgctgaca
    13441 taaaagatgt tgcacttagc gatgatggta tttttatact agaaaaagat ggcactatta
    13501 ttaaaactga ttataactta agaaaaattg cggaaaaaaa atttgaattt gctatttttg
    13561 taaaaagcaa tatatacaat aattatttat atatttttga aaaaacaggc tatcttatca
    13621 aaatgaatct aaatttagat aatacacaag tatttaaact ttcagaagct gttgataaaa
    13681 tttctttcat gggaaatggt aaattttact acggaaataa aattttagat ttgctatgat
    13741 aaaaatttta gaacaaacaa taaaggcttt aaaattaaat ttaaagccct atgacttaag
    13801 tatgttgact agaaaaaaaa gttatatttg cgctaaagat caaaataaca ttctttttat
    13861 gtatacagga aaaacaaaat ttttaatgaa agatgcctta tttttagaaa atctagcaca
    13921 gcaaattaac ataaataaca aatatttttt tagcatgact tctctttgct ctaaagcaaa
    13981 aaatcatcta gaaatgaaag gatttaatat ctatgctgct ctgtgatatt ggtaattcaa
    14041 atgctaattt cctagatgat aacaaatatt ttactcttag tatagatcag tttttagaat
    14101 ttaaaaatga acaaaaaatt ttttatatca atgtcaatga acatctcaaa gaacatttaa
    14161 aaaatcaaaa aaattttatc aatcttgaac cttatttttt atttgataca atttatcaag
    14221 gattaggaat cgatcgcata gcagcttgtt atactattga agatggagtt gttgtagatg
    14281 caggtagcgc tattacaatt gatattattt ctaattctat acatcttggt ggttttatct
    14341 tgccaggtat tgcaaattat aaaaaaattt atagccatat ttcaccacga ttaaaaagtg
    14401 aatttaacac tcaagttagt cttgatgcat tcccacaaaa aaccatggat gctttaagtt
    14461 atggtgtttt taaaggaatt tacctactga taaaagatgc cgctcaaaac aaaaagcttt
    14521 atttcactgg tggagatggg caatttttag caaattattt cgatcacgca atttatgata
    14581 aacttttaat ctttagagga atgaaaaaga ttataaaaga aaatcccaat ttactttatt
    14641 aaaaatgtta caaaaattct cattgatatc aaaccttaat gaaatttaac tttttgtaaa
    14701 acaaattcaa ttaaacttct atttagaaaa aagtttatta aaataaaaaa aggaaaaaca
    14761 atgagccaac aagaatttga tgtgcttgtc atcggagctg gaatttcagg agcagcatta
    14821 ttttacgagc ttgcaagata tacaaatatt aaaaatattg ctttgataga aaaatataat
    14881 acagctgcaa cattaaattc taagggaacg agtaattctc aaaccattca ttgtggagat
    14941 attgaaacca attatacttt agaaaaagcg cgaaaagtaa aaagaacagc tgatatgata
    15001 gttaaatatg gactcatgca aaatgcgcaa aataatttca tgttttctca tcaaaaaatg
    15061 gctctagctg ttggagatat agaatgtgat tatatgaaaa aacgctatga agaatttaaa
    15121 gaactttatc cttatgtaaa atttttcgat aaagcaaaaa tcaaacaaat tgaacccaag
    15181 gttgttttag gagaagattg caatcaagat agacctgaaa atatctgcgc catgggtgtt
    15241 gaaagcggcg aggtttttac aactgtagat tttgggaaaa tgagtataaa tctaatagaa
    15301 caagcccaaa aacaaaataa aaatactttc gttgccttta atcaagaaat tattcacata
    15361 gaaaaaaagg atgatatttt tatattaaaa acctcaaatc atcaagaata ccatgccaaa
    15421 agcgtagttg tcaatgctgg agcgcactct ttatatttag cacataaaat gaacttaggt
    15481 atggataagt cttgttggcc tgttgcagga agtttttatt taaccaaaca aaaactttta
    15541 aatggtaagg tttatatggt gcaaaatcct aaacttccat ttgcagctct tcatggagat
    15601 cctgatttgc ttgctgatat gaacactcgc tttggaccta ccgcacttgt tattccaaaa
    15661 ctagaacgtt atcatggtct aaaatcagtt ccagaatttt ttgaagcact aaaacttgat
    15721 aaaactgttt taaaagtaac ttttaatatg tttaaagatg caacaattag aaattacatc
    15781 ttttataatt atctttttga actacctttt gttgataaaa gcttatttgt taaagatgcc
    15841 aaaaaaatag tcccaagtct taaagcaagc gatatttatt atgcgaaagg ttttggaggc
    15901 gtaagaccgc aagttattga taaaactaaa ggagaattaa tgctaggtga agcaagcatc
    15961 acagaaaccc ctggtattat tttcaatatg actccaagtc ctggagcaac aagttgtcta
    16021 ggaaatgctg aaagagatgc aaagcttgta tgtaattacc taggaatgga atttaacgaa
    16081 gataaatttt cttcagaatt attgtaatca ttttgtttct atttttagct acaataattt
    16141 caaaaggagt ttaccatgct taaaaaaaca aaaattgtag ccacagtagg tccagcaagt
    16201 gaaaaggaag aaattctacg ccaaatgatt atcaatggtg taaatgtttt ccgtttaaac
    16261 ttttctcatg gaacacatga gtatcataaa aaaaacttag ataccataag aaaagtagct
    16321 aaagaattgc atattcgtat tggaatttta caagacatta gtggtcctaa aattcgtaca
    16381 ggtgaactta aagaaccatt tgaattaaaa aagggtgata gactcgattt ttatcgtgaa
    16441 acaattttag gagagaagat tgctcaaaat cattataaaa tcagtattaa tcaaaaatct
    16501 attttagata tgttaaaaat tgatgaatat atttatctat atgatggatc aattcgtgct
    16561 aaagtagtaa acatagatga tcaaaaaatt gaaaccatta tagaaaatga tggtttttta
    16621 aactcaaata aaggtattaa ttttccgaat actaaaatca atattgatgt tattacacaa
    16681 aaagataaaa atgatttact ttggggtata aaaaatgaag tagatttttt agcaatatct
    16741 ttcgtacaaa atgcgcacga tattgatgaa gttcgtgaaa ttttagcaca aaataacgca
    16801 aaaatatcta tttttgcaaa aattgaaaaa tttgatgcag tagaaaatat tgatgaaatt
    16861 attaaatcta gcgatggtat aatggttgca agaggagatt taggtattga ggtgccttat
    16921 tataaagttc ctaatatcca aaaagaaatc atacaaaaag caaacaatgc ctctaagcct
    16981 gttattactg cgactcagat gcttttttca ttagccaaaa gcaaaaccgc cacaagggct
    17041 gaaatttcag atgttgcaaa tgctgtttta gatggaacag atgcagtaat gctaagtgaa
    17101 gaaagtgccg ttggtataga tcctgcaaac gctgttggta taatgtgcca aactataata
    17161 gaaacagaaa aacgctatcc atataacaaa tttaatgatt ttaatgattt agacaataca
    17221 gataaaatca tgcgttcttc agctcatctt gcaacagatc ttaacgctga tgctattttt
    17281 tctttaacaa gtagcggaaa atctgctatt aagattgcga gatatcgtcc aaatatagaa
    17341 atcatagcag tagggcattc tgaaaaaacc ttaaactctt taagtatagt ttggggagtt
    17401 aatcctgcaa tcttggttaa taaaagtaat gaacttacag aattattaaa agactctgta
    17461 agatcaagtg ttgaaaaagg ttttatggat gaagataaat gctatcttct aactgcaggc
    17521 tttccaacag gagtagaagg tactagcaat cttatccgca ttctcaataa agagcaaatt
    17581 gcttattatc tacaataaaa cattaaattc ctttgaaaat aaggaattta atgtccttat
    17641 aaatttttta agccaaaagt cgatataaat taaagcctca cacaaaggag caaatatgca
    17701 agtgaatact ttttcaaata tcgctagcat ggcacaaaca caagttagca ataagaaggc
    17761 agatgatgct aaggaaaaca caaaagacaa aaatgttcaa agtgctaatt ctagcaagga
    17821 tgtagataaa aatacccttg aaaaattaaa cgcacttggt ggaaagggca ttacacaaat
    17881 ttacctagtt cagtttcaac agcaaacaat gaatgctgta ataggttcga gcaatgccca
    17941 aactggacta gatagtcttt taaatggtgc taatttagat actgcgaaat ctatacttac
    18001 aaatattgat tttgcatcct taggctacag tggcaaaaat ccacttgata tgaatacaga
    18061 tgaacttcaa caacttgtaa gtgaagatgg tttttttgga gtggaaaata cagccaatcg
    18121 catcgcggat tttgttatta aaggcggtgg cgacgatgtt gaaaaattga aaaaaggtct
    18181 tgaaggtatg aaaaaaggat ttgagcaagc agaaaaaatg tggggtggag aacttcctca
    18241 aatcagtcaa aatacaatag atgcggcact taaaaaagtt agcgatcgca ttgatgaact
    18301 aggcggaaaa actctagatc ttcaagctta actaaaaatg cttagaaatt tctaagcatt
    18361 tttagttgtt attaatatca aaagtaaaaa attcactctt aaaattatta ggtaaagttt
    18421 tatactgaga tattgcagct tcatagttct ttacttcttg atacaacata ccaagagctg
    18481 ctttactttc tttgttattt ttatctgtaa gtttagaaag ctgcaaaagc gctatagctg
    18541 aatttggatt atttgcacct atggctgcta cggctgctaa aaataaagtt ttagtatctt
    18601 tagctccata atcatcaatc aaagaattat aaagcgcata agcctcctcg tattgctgtg
    18661 caaaaatatc caaataagct aaagtttgta aaataccctc atcttttgct cctgaaacat
    18721 taatcaactc tttaattttc tgtctttcta aatttaaaag ccctgcaata tgcattaaat
    18781 taacataaaa ttccctagct atatttggcc caccaaaaac actacgataa tcaagtttta
    18841 aatttttaaa atgaatttga gcattttgag catattcttt aatatttaaa tttgaattta
    18901 aagaattaaa atacaaaata tttgccaaaa tatcttcagg caactctgaa cgcaatttag
    18961 caattttcac atctacttga ttattaaggt tattattttt agcaacaata gcttcaaaaa
    19021 tcaaactcaa aggcgtgtct ttttttgttt catctaaata aggaagcata gaaatataat
    19081 tattattaac taaaaacaac atactttttt gcatattagc tttaaaatta gaatcagcag
    19141 ctatattatc aagaatttca ttgtaaagtt tagttgtatc aatatcaatt aattttgcac
    19201 aaaacatagc aaaagcacct gctaagtaat ttttaggatt aagatgatat gaacttgaaa
    19261 aatgcttata agcaagttca taattttgca tttgggcata agttaaagcc aaattataat
    19321 gtaaaatact atgttctgga taatccttga taagtttttg aaattcttgg ttagcaaggc
    19381 gtaacttctg atttaatgca tagttaataa tattggcaat ttttacattg gtagatgaaa
    19441 gagccttgct tgtattaaga taaactcccg catcagcact atcatcaacg aaatctgtaa
    19501 cattagcttt tttaatatat aaagcagcct gcttactatc aaaaacttga taaggcgcaa
    19561 aataaaaaag caaatcgaat tgatcttttt gtttttttaa caaatctttt gaaaaagaat
    19621 tttgagcaac tgctatatta aaaagatcct tatttaaacg aacttgaatt ttataagcat
    19681 ctaaaatctt atatctatct ttatcattat cataagaatt ttgtaagcgc gctaacatat
    19741 cttgataatt tcctgtttta atatcaacca atgttaaagc cgccaaactc tgattaaaat
    19801 ctctttcaat tttcatcgct gtacttaaag cgactttagc tttagcatat tctcctattc
    19861 tagcgtataa aagacctaaa gataaactag attcaaaatt gccttgagaa tttaattgct
    19921 gtatagcctt ggaatcaaag tccatttttg cataaatttt agcagacaaa tactttgcaa
    19981 catcagaata cggctccata tctgttcttt gtaacatttg taaagcctca gggtaatatc
    20041 ctttgtaata attaatcaag cttaaataat aatcatataa ttttgatttt ccttcttttg
    20101 gaagatacac ttgagctaaa tcaatataat atctaaattt ttccttatca ttaagcttta
    20161 aagcacaaac agcagcattg atagcagcta cactttgatt ttctccattg gctatagctt
    20221 tcttgaagct ttcaaaagct tcttggaatt tattctcatt catttgagaa acgcctaaat
    20281 tataattaga taaagattca ttatatacgg caacttgctc ataaactttt aaagcctgtt
    20341 caacctcacc ctttaaatat aaagcatttg ctttttggat cataccatca attctttgca
    20401 tatcattgta tttatatgat tcatcaggca taacaacagg ttgttctaaa ggcttagaag
    20461 ctataatatc tggtttaatt tttccttcac taaaagttaa ataaaaaagc gtaaaaacta
    20521 aaatacaaat aatccccaaa gataaaccta caagagacat aaacttacga tctttatacc
    20581 aaggcgtagg ctcttgactt tcaacttctt caaaagttga tacatcttca ggcgcacttt
    20641 ctcttgtaaa tttaaaacca ctttcactat tttcttgagg taattcttct ggcaatgatg
    20701 caaattcttc atcttctgga gcttgcccct cttgcccttt aaatccctct aaactctcat
    20761 caagtcttgg ttgatttaag ccatcttcgg gtttttctag tattatatct tcttgttcag
    20821 ccatctatac tctttaaaaa tattttttca aaacatcagg aatatgaatt tttccttctt
    20881 tatcttgata attttccata atcgctacca aggttcttcc tactgccaaa gatgagccat
    20941 taagagtgtg aacaagttca ttttttcctt gttcgttttt atagcgaatt ttagcgcgtc
    21001 ttgcttgaaa atcacgacaa tttgaaacag aactgatctc acgatattta ttttgtcctg
    21061 gaagccacac ttcaagatcc acagtttttg ctgcactaaa acccaaatct ccggtgcaaa
    21121 gcatcaaatg tctatgcgct aaacctaaag aactgagtaa atcacttgca cactcaagca
    21181 tttcattaaa cacgctatca ctttgctcag gtttagtaat acttacaagc tctacttttt
    21241 caaactggtg ttgtcttata atacctcttg tatcacgccc tgcactgcct gcttcttttc
    21301 taaaacaagc gctataacaa gtcattttta tcggtaaagt ttcactcgct aaaatttctc
    21361 cactataaag attggttact ggaatttcag aagttgagat caaatacaaa tcctcatcat
    21421 ctaccttata catatcttct ttaaattttg gcaactgacc tgtcccaaac atagtagcac
    21481 catttaccaa aaaaggcaca ttaacaaatt caaatccacg acttctatta aaatctatca
    21541 tataatttac caaagcgcgg cttaataaag ctccttcgtt tttaagcaca caaaaacgac
    21601 tttgtgaaat ttttacccca cgcacaaaat caagccaatt taaactctca cctaattcaa
    21661 aatgttcttt tggagtaaaa tcaaagctag atggatttaa aactttttta agctccacat
    21721 tttcatcttc gtcttcaccc acaggcacac actcatcagg gatatttggg atggcatgag
    21781 cgatttcttc aagctcattt tctaaagcat ttactttagc gctttgctca ttaattttac
    21841 ttttattttc gcttaatttt gcttttaaac tttctttatc ttcggctgta gcaagctctt
    21901 tactgaattt attttgaaaa gcttgaaatt cttctaaagc tgttttttct ttttttaaac
    21961 ttgcaaaaag ttcagcaagt ttttttaaga tattttcatc aactttttta ttttttaact
    22021 ttttagccac ttcatcaaaa ttattttgca aattttttaa atctaacatt ttctactcct
    22081 taaagtccga ttttttcata aattttttgc attttttctt gggcgatttt tcttgctttt
    22141 gtcgcaccaa aatctaaaat ttctttcaaa tgcgaaggct tttctaaaag ctcattatat
    22201 ttttctcttg cttctttaaa ataagcattt gcaagttcat ttaaatacat tttaaaatgt
    22261 ccataaccct cgccaccttt ttcatagcgt atttgtaatt ctttttgccc tgcttcatct
    22321 aaaaaaagct ttgcgatttt aaaaacattg cagtttttaa aatcttttgg atcttctaaa
    22381 gcggtgctat ctgtaactat ggaagaaatt tgttttttta aggttttttc actgctaaaa
    22441 atatctatag tattttgata agatttactc atttttgccc catcagtgcc tacaactaca
    22501 gctacttctt cattaacttt agcctctgga agggtaaaaa tttcacccca ttcattatta
    22561 acttttaaag caatatcgcg tgcgatttca acatgctgga tttgatcttt tcctacaggg
    22621 acaatttgtg tatcaaaaag caaaatatca gctgccatta aaacaggata agaaaaaagc
    22681 ccatgtgaag cactaagccc cttagcaact ttatccttat aactatgcgc acgctctaat
    22741 aaacccatag gagtaaattg cgataaaatc caataaagct ccataacttc cttaacgtca
    22801 ctttgcaacc aaaaaacgct tttttgagga tctatgccaa ggcttaaaaa agccgcagca
    22861 gcttttaagg aattttgttt aagtttttct ccatcttgag aagaagtcat ggcatgataa
    22921 ttagcaataa acataaacat ttggcttttt tcttgtgcat ctaccatttg cttaatcgca
    22981 ccaaaataat tacctatatg caaatcgcca cttggctgaa ggcctgttaa tactctcatt
    23041 ttatcacctt tttaatctcg cttaaaagct catctatatt tttattttct atatttaaaa
    23101 taaaatttgc cttttgttca tacttgctta aacgctcatt atataatttt tttgctttaa
    23161 tttcatcata aaacaaaggt cttttagaaa tttcatcttt gtctaaacgc ttttttaaat
    23221 attcaaaact tgcttttaaa taaatacaaa aacctgcttt ttctaaattt gaaacattaa
    23281 caaaaccccc acctgtagca atacaagttt tctcacaaga actaaaaaaa tcagacattt
    23341 tttgctcttg ttctctaaaa aaattctccc ctttttgttc aaaaatttca ctgacttttt
    23401 gattaaattt ttgttctatt aaaaaatcac tatctaaaaa aacaagatct aaatccttag
    23461 ctaaagctct tgctaaagtg ctttttccag aacccataaa tcctataaaa acgatatttt
    23521 tagctttcat cattttcttt actgcccttt ttacgcgaag caatcactaa aggcacacct
    23581 tcaaaattaa attcttttct gatttgattt tgtaaataac gcttatagct aaaatgcaag
    23641 gccttaggac gattcataat aagtgcaatt tttggcggtg ctaagtcata ttgtactgca
    23701 taataaattt taaccaattt cccataatca tgcggcaaag gatgtgctct tgtggcattt
    23761 tctatcaaag tattaagctt agaagtttgg attttttgag tgaaattttc aaaaatttgc
    23821 aaaattttat cgagtaaaac atgcaccctt tttccactta aagctgatac actaatcaca
    23881 ggtgcgtaag ctagaaattt aaaacgatca agacgcaatt cttttacagt cttatcaaaa
    23941 tccatctcac ttttatccca tttatttaaa acaataatca cacccaaata atgcttagcc
    24001 acaagcccag caatgcgttc atcaagctcg ttaaagccct catgcgcatc taaaaccaaa
    24061 agtgctattt gagaatgaga taaaattttt tccgtgcgat ttagggcaaa gcgttcgagt
    24121 ccttgaattt tacccctttt tctaatacct gcagtatcaa caaattctat cactttatct
    24181 ttatgaacta cactttcatt aacaggatct atagtagttc ctgcgataga acttacaaca
    24241 ctgcgttctt gtttaaccaa agcatttaaa agacttgatt ttccaacatt tacacgccct
    24301 acaataccca ctctgatatg attttgatcg acttctttaa attgaaattc ttttccttct
    24361 tcataatgct ctaaaaaatc ttctaaattt tcttcttcat cagggattaa aaactcttca
    24421 tgtaaaaatt tttcaagcca ttcataaagt tcatctaagc ctacattatg ggttactgaa
    24481 agattgaaga tttcctttac tccaaaattt gcaaactccc aagccctttc ttcatctttt
    24541 ttattatcta ctttattaac cactaaggct ataggttttc caagtttttt taaagaataa
    24601 aaaaactgtc tatcctcatc atcaggcgct aatttcccat caactagata aagtatgata
    24661 tcgctttctt tagctacttt taaagtgttt tttttcacat ttttaaaaag ttcatcactt
    24721 tcatcaagcc ctccactatc aataagcatg gctttttttg aatgaatatg aatttgcgtt
    24781 ttatttgtat ctctagttgt acctgaaata tcacttgtaa tagctattct ttgtcttgcc
    24841 attctattaa aaagacttga ttttccaaca tttggcttgc ctataagtat gatgctttgc
    24901 atttttttcc tagaaaatta tatttttaaa attatataaa atttggctta atattaagca
    24961 aaaaaagact agaattaaca cagattttag tcaaggaaaa aaatgctaaa agtaatcaag
    25021 cataatttag gaatttattt catgatttta gcatgtttgg attttgcact tatgggagct
    25081 tgtgcaaaaa ttcttagcaa ggaaatgagt tctatagaaa ttatgttttt tagaaatatc
    25141 ataggaattt ttttcatagt ctatctttta aaacgatcta aggcacataa agaaggggga
    25201 catttttggc tcttggtatt tcgtggagta gtaggcacgc tttcactata tatgtttttc
    25261 tataatgttt caaatattac actaggcgga gcttttgctt ttcaaaaaac tgctcctatt
    25321 tttattactt taatagcttt tgttgttttt aaagaaaata ttggcatcaa aggctggata
    25381 ggaattttaa tagcatttgg tggagtgctt ttaatcgctc agccttgggc tcataattta
    25441 aatcattcag gctttgattt aaaaaattca gttataggta tcacgagtgg atttttagcc
    25501 gctttagctc ttacaagtgt aagagaactt agaaaatctt acactacaga acaaattgcc
    25561 ttttctttta tccttttagg aaccttaatg cctttaattt ctatgatcag tgctgaattt
    25621 tttgaaccac agcatcttga ttctttacat ttagatttca ttctagcacc ttttgtgatg
    25681 ccaagtctta cagcttggct tatcattgcc attatgggaa ctttaggcac catttatcaa
    25741 attcacgtca ctaaagctta tggtatcgct aaacaagcag gagtagttgc tggagttagt
    25801 tatcttgatg tggtatttag tatgatagtt gggataattt taggagatag tttaccaagt
    25861 gctatggttt ttttaggtat aataggcatt atttttggtg gattaatttt agttaagaac
    25921 aaaggaaaaa aatgaaaaaa atgatactca ttgctggtcc ttgcgtgata gaaagcaaag
    25981 atttgatttt taaagttgct gaacagttaa aaaattttaa tgaaaatcca aatatagaat
    26041 tttatttcaa atcaagtttt gataaggcca atcgcacaag tattaattct tttcgaggtc
    26101 ctggtcttga agaaggatta aaaattttac aaagcgtaaa agatgaattt ggtatgaaaa
    26161 tcttaaccga tatacacgaa agcaatcaag caaaccctgt aagtgaagta gctgacgtct
    26221 tgcaaattcc tgctttttta tgtcgtcaaa ccgatttact tgtagccgca gcaaaaacta
    26281 aggcaaaagt taatatcaaa aaaggacaat ttttaaaccc aagcgatatc aaatacagcg
    26341 ttaaaaaagc tctacaaacc cgtggcatag aagatgaagg ctatgaagct gctcaaaaaa
    26401 atggtgtttt tgtagctgaa agaggatcta gctttggcta tggaaattta gtagtagata
    26461 tgcgttcttt agtcatcatg cgtgaatttg ctccagttat ttttgatgct acccatagtg
    26521 tacaaatgcc aggggctgca ggtggaagta gcggagggaa aagcgaattt gtagaacctt
    26581 tagcaagagc ggcagcagcc gtaggcatag atggcttttt ctttgaaaca catattaatc
    26641 cttgcgaggc tttatgtgat ggacctaata tgcttaatct tacacgcctt aaaaattgcg
    26701 ttaatacatt actagaaata caaaatatca taaaggaaaa caaatgaata ttattgaagg
    26761 aaaattaaat ttagactcaa atacaaaaat tgctatcatt aatgcaagat ttaatcatat
    26821 catcacagat cgccttgtag aaggagcaaa agatgctttt ttaagacacg ggggcaaaga
    26881 ggaaaatcta agccttatac ttgttcctgg tgcttttgag cttccgtatg cgttaaaaaa
    26941 agctatagaa agcaaaaaat ttgatgcaat ttgttgcgta ggtgcagtaa ttcgtggctc
    27001 aactccgcat tttgactatg tttcagcaga aaccaccaaa ggcatagcca atgtgagttt
    27061 aaatcataat atccctgtaa gctttggtgt tttaactaca gatacaatag aacaagccat
    27121 agaaagagct ggaagcaaag caggcaataa aggctttgaa gctatgacaa ctgtaatcga
    27181 gatgttaaat ttaagcaagg agctttaatg gcaacgcgtc atcaagttcg ccaaagcgtc
    27241 atctccttac tttatgcttt tgaattaaat tctcaaaaca acgtttttgt agatgaaatt
    27301 ttagatgaaa aaaaaatacg caatgaacaa aaaaatttta ctttaaattt atatcatgga
    27361 attttagaca atttaaacaa tattgatgaa accttaaatt catttctaaa tgataatcaa
    27421 attacagctt taggacatgt agaaagagct atactaagac ttggagctta tgagttactt
    27481 tttaccgata ctcctagcgc cattgttatc aatgaggcta tagaacttgc caaagaactt
    27541 gctaatgata attctccaaa atttataaat ggagttttag atgccttgat aaaggctaaa
    27601 aaatgaagct ttgtgtcgca cttgatcttt ctacaaaaga agaatgcttg caacttgcta
    27661 aagaattaaa aaatttagac atatggttaa aagtaggttt aagagcatat ttaagagatg
    27721 gttttaaatt catagaagaa cttaaaaaag ttgatgattt taaaatattt cttgatctta
    27781 aaattcatga tattcccaac actatggcag atgcttgcga agaaatatca aaacttggtg
    27841 ttgatatgat caatatccac gcaagtgctg gaaaaatagc tatgcaagaa gttatgacac
    27901 ggcttagcaa attttcaaaa agacctttag ttttagcagt ttctgctctt acgagttttg
    27961 atgaagaaaa tttctttagt atttatagac aaaaaatcga agaagctgta attaattttt
    28021 caaaaatatc ctatgaaaat ggacttgatg gtatggtatg ctctgttttt gaaagtaaaa
    28081 tcatcaaaga acacactcaa agaaatttcc taactctcac tccaggaatt cgtccatttg
    28141 gagagaaaaa tgatgatcaa aaacgcgtcg ctaatttaac aatggctaga gaaaatttaa
    28201 gcgattttat agtagttgga cgccctattt ataaagataa taaccctaga aaaatttgcg
    28261 aaaaaattct acaagaaatt taataatcat tatccttgtt atgttttaat aataaaaatt
    28321 tttaacaagg aaaaattatg attataaccc ctgagaattt atataaaaaa agaagagatt
    28381 ttttaaaact tggagcaggt gctttaataa gttcaagcgt gcttgcttct aaattatctg
    28441 ctttaaattt cacaagcgat actaatccaa acaaacttga aatcagcgat gaagaactgg
    28501 ctacaaatta tgtcaatttt tatgaatttt caacagataa aaaaaaggct gtatcattgg
    28561 cacaaaattt caatactcaa aattggaaaa tcgatatcag tggagaaata gaaaaacctt
    28621 taactttaag catggaagat attttaaaat tcccactaga agaaagaatt tatcgttttc
    28681 gctgtgttga aacttggtct atggtggtac cttgggtagg ctttgaattg cgtcgtttga
    28741 ttgaaatggc aaaacctaca agcgaggcaa aatttgttaa attcaccact cttttagata
    28801 agagtcaatt tcccgatcaa gacgctttat ttccaactat agactatcct tatgtagaag
    28861 gacttcgcat ggatgaagct atgcatcctc ttaccttgct tgcagtagga atgtataaaa
    28921 aagccttaaa gcctcaaaat ggtgctccaa tacgccttgt tgttccttgg aaatatggct
    28981 ttaaaagtat taaatctata gttaaaatag aatttaccaa agaacagcct aaatccactt
    29041 gggaaagtta cgctccaagt gaatatggtt tttatgctaa tgtcaatcct aatgtttctc
    29101 atcctagatg gtctcaagct aacgaaaggg ctttaggaga cttctttacc aagcctactt
    29161 taatgtttaa tggttatgaa aaagaagtgg caagtttata taaaaacatg gacttaaaag
    29221 tgaattttta atgcagacaa aatactttaa atttcttgct tattttagct ttatcataag
    29281 tttaatctat ggcttttatc atatcataaa agcctttgat tttgtaaaag aagcctacat
    29341 ttacactgga atatttgctt taatcttttt aaatttaagt cttttatttt ctttacttaa
    29401 attta
//
LOCUS       DAZBIH010000010        28179 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.010, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000010 DAZBIH010000000
VERSION     DAZBIH010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 28179)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28179)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28179
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.010"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            22..429
                     /locus_tag="ACHFOB_000354"
     CDS             22..429
                     /locus_tag="ACHFOB_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799188.1"
                     /translation="MNLLNKKIILVYAIYIGIIALIYFFGKDFLLVFDNLKNFFLSVN
                     PAYYMLSLPISMFFVFIVISFLEKRGIKGVLVYLLTVIPLLFLFFHYSNAKLSVDYLN
                     SEAMFIIFLILFSSLITPVAIYQMFREKEEVEG"
     gene            440..784
                     /locus_tag="ACHFOB_000355"
     CDS             440..784
                     /locus_tag="ACHFOB_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011117569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799189.1"
                     /translation="MISVTLLFFLFGLNKLMCGFLFNGKNTIYKLLSYIKIHAIFINL
                     RTLLFLILVLLAFNADLSYMGTVLFLVDLMTAISIFFAYAQLAYGFSIKDCMFYLVCG
                     KIDKEWLKEIQK"
     gene            781..1176
                     /locus_tag="ACHFOB_000356"
     CDS             781..1176
                     /locus_tag="ACHFOB_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799190.1"
                     /translation="MTEEKLIKKEIFSYAIFIAIIALICIFKNEIWEFVKFIFSNLDF
                     ICGNFANFVSEDNIIFFPVTTLLIVFTIAICAVWGLSNVLSLSLFVIPIFVAVFYIFN
                     IDINLKNLYSSYFIFLIIINGLLWSANQR"
     gene            1173..1676
                     /locus_tag="ACHFOB_000357"
     CDS             1173..1676
                     /locus_tag="ACHFOB_000357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799191.1"
                     /translation="MKKITLIAYFIIFLSGLWFLFSAIKEYFGILSFILGIALIYFGV
                     INIKKISNKVHKNKTEFETLLNTTNHIFALFGSVMLLVFIIFFTFQNEINIKFFSDQG
                     LVIEDDKKISIYFKSKEVKTLDSSKYEDISTMYSDDYVNVIFKNKDDNSSLILRCDES
                     GCKEEKK"
     gene            1673..2215
                     /locus_tag="ACHFOB_000358"
     CDS             1673..2215
                     /locus_tag="ACHFOB_000358"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799192.1"
                     /translation="MRENILIKKLYVDNDIIRDLYKKSLDFAINEREKAIDFLYKKTS
                     KGTYNLLSEIKITLESLENSINENMILFGKFAFFFKNPKYYTRQSHQIIAKISSCYDL
                     LLGLFYHYGFFQDEKQINDILHKLFEAFKVKSDFSLDFQNESPNAKFKEVKLYFEPHF
                     ATFYDYLEFEKYLYESEKGE"
     gene            2216..2611
                     /locus_tag="ACHFOB_000359"
     CDS             2216..2611
                     /locus_tag="ACHFOB_000359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraM"
                     /protein_id="HFN5799193.1"
                     /translation="MNKKELIEEIAKKHHIILDENDPILAVVSANEIIFDDFLKKIDL
                     LFTKHKTDLESYKFNIFNEIREYSKSNQEALKDILIQAQTNQNTIKPSQEKTEDTKEK
                     KNTNINFWIIAIAGQIIFLLVGLIIGITI"
     gene            2692..3378
                     /locus_tag="ACHFOB_000360"
     CDS             2692..3378
                     /locus_tag="ACHFOB_000360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5799194.1"
                     /translation="MIISVVNEKGGSGKTTLAVNLSARLAEDGDNVLLIDADPQKSTE
                     VFSDMRSQSNLEPLFSNVSKTGVSLGDEIKRMKNAFDSIIVDTGGRDSKEMRKAILSS
                     NIIIIPTIPSQYDVNVLDHMLEIYNEVIDINPNLLALVLVNRVSPNPFLAKELENLKE
                     YINETKKEKGLDRVIMLESVIYERQAYRKAVIEGKSMKEFCDKNDKALNDFENFYQEL
                     LKITNEKLGV"
     gene            3381..3605
                     /locus_tag="ACHFOB_000361"
     CDS             3381..3605
                     /locus_tag="ACHFOB_000361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799195.1"
                     /translation="MGFKKLSSETPKNENDFVNSARGETGNAKTSNAKRNKKLVVNFT
                     EEEYQTLNQEANSIGLSLNSYVRFKIFRKE"
     gene            complement(3846..6005)
                     /gene="traI"
                     /locus_tag="ACHFOB_000362"
     CDS             complement(3846..6005)
                     /gene="traI"
                     /locus_tag="ACHFOB_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TraI/MobA(P) family conjugative relaxase"
                     /protein_id="HFN5799196.1"
                     /translation="MIIKKIPSKKQNKSSFKNLSNYILDKDNNNAKVLVDYMLDKNNE
                     MDKVEGYHFTNCSFDNDEDNINEIINTQKLNTTTKQDKTLHLVVSFQEDEKPTLEILQ
                     AIEEEIAKSLGMSDHQRLSVIHSNTNNLHIHIAINKINPRTLKVVNPYNDAKILQETA
                     MKLEKQYNLKLDNHISQKDKQSNKYNIHTMNCNFETWVKEKLSKQVDLMLKDEKTTFK
                     DIKQLLAKYDLEFRERRKGFVIASKSEKLFCKASSIHRELSKQALEKRFKELDLKQEK
                     ENTQNIEEEKREIKERYQRPNKETSKALWEKYLRIENEKKAELDKELRMLKLRRNEFK
                     TSIPSMKFNKNTFAHVKNQRMIFKNKQKELYQKYKRVSYRDFLINESLSGNEEATRAL
                     RRSKTKINENENTLSSTQEKPKIFENVDYITKEGYAVYKSGFNKAIDKGEMLKVSLIQ
                     NGKDDKEFLLNSLLMAIDRFGNHLNITGDENFKRNILEVANDYNLNVSFTDPQMQKIQ
                     ESNNDKRQEMKSRKILKNIVELKIKLIKDEPGIKENIKEKELKALKAILKKVSNTTLS
                     VFEAELKKIGFSSDEINSMDIQSIDTQIEGFVVNSINKEGLIAMNEEIKQALIDDKEI
                     KKFEKFEHLFLNTNKITDIAKGFYTNRKIDADEYVKRFSMQESKISKVANVISMLSDK
                     NIDIMEKYAKKLEKDLKYQYLKKAEVIKSNDINLNNF"
     gene            complement(5968..6351)
                     /locus_tag="ACHFOB_000363"
     CDS             complement(5968..6351)
                     /locus_tag="ACHFOB_000363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA transfer protein"
                     /protein_id="HFN5799197.1"
                     /translation="MKKTKQVNIRLTLEEYNLLTEKAQNHGLTLSRYLRDLSMNYPIT
                     CIIDQKVAHDVLNIAGDIGRLGGLFKHWLVRNEDNKANFSNKRSYEDIDEIVDQILDL
                     QILLKEQAKRIIQNDNQKDSKQKTE"
     gene            6551..6874
                     /locus_tag="ACHFOB_000364"
     CDS             6551..6874
                     /locus_tag="ACHFOB_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002783722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799198.1"
                     /translation="MKRGFAKIEFFANLEYLKQEYNKGYVVSKILYEKAKQDKNISMV
                     YSQFNKYFNEVFKNKIEKKEITQENNQSLALENKEPIKVKIDTKSKKVFDAKFGKDIK
                     EDDLL"
     gene            complement(6869..7204)
                     /locus_tag="ACHFOB_000365"
     CDS             complement(6869..7204)
                     /locus_tag="ACHFOB_000365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799199.1"
                     /translation="MEKSKKERIEKLSEKTKNLNLDNELYIFVNNIKWGKKANILINC
                     VDLGTNIEFYFSVFFSNKYFSRSGDFNFREYMENSFENNRILAVKFKRSKTGYLNCFN
                     ARIAEVSDL"
     gene            7981..8895
                     /locus_tag="ACHFOB_000366"
     CDS             7981..8895
                     /locus_tag="ACHFOB_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799200.1"
                     /translation="MNNEIEIKDLNEINKNNKQQVVYRKDNLSTDCITGEVIERNQII
                     VRKVQTRESFIKLFTENIHYIINLEPQEKTLFFTLLSSVDYKNVVRFDKSMKQNIILD
                     KVLSRAGMYRALNGLIEKKVIFKIDRDFVKSYAGVGSDDCYLFNPNLVGRGSWNDLKN
                     LRHTITREWDFENLEVRENLEIEEEYLGLDEIKNNQKQYQVKEINQEHDETTKVKNTE
                     IVIEEKNNSANNQYSFDKKEEPSINKKVLISNDTQPSLFDENQKEREARLFVEKYAGI
                     LTGGFDPTKSAKELKREKLDKDLEEGRI"
     gene            8898..9311
                     /locus_tag="ACHFOB_000367"
     CDS             8898..9311
                     /locus_tag="ACHFOB_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002840246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system VapC family
                     toxin"
                     /protein_id="HFN5799201.1"
                     /translation="MKKVYLDTNIFLDYFNAERTYHNEAKQLIYFLIANNIQIVFSED
                     MISTIAYLIKKENLNNFTHFLKDISLEKDFNIASFGASVINMACDYYDKYRGDFEDYL
                     QYFCAEKEGCCAIYTMDKNFPNLKIPIKRYGEIDI"
     gene            9716..10654
                     /gene="trbB"
                     /locus_tag="ACHFOB_000368"
     CDS             9716..10654
                     /gene="trbB"
                     /locus_tag="ACHFOB_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002792775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer ATPase TrbB"
                     /protein_id="HFN5799202.1"
                     /translation="MGNLEFQARINEKIKREFGDILTHLEDKETIELMLNSDGKLWLE
                     KLGQDMICLGEFSEAKAKSIITAVSTLLDTTTNAENPILECELPLDGSRFEALLPPIV
                     AKPTFTIRKKAVKIFTLDDYVESKILTPKQKEVLINAIKERQNILVVGGTGSGKTTFS
                     NAIIDGISKITPEHRIVIIEDTAELQCASENKVILRATDKVDMLRLLKATMRLRPDRI
                     IVGETRGKEALDLLKAWNTGHPGGIATIHANSANGGLTRMEQLISEATSAKMSKLIAE
                     AVNLIVFISKTKEGRKIKEIIKVIDYENDKYITQGV"
     gene            10655..10951
                     /locus_tag="ACHFOB_000369"
     CDS             10655..10951
                     /locus_tag="ACHFOB_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002784998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbC/VirB2 family protein"
                     /protein_id="HFN5799203.1"
                     /translation="MKKFLLLFLILGLGYALASTTGAGLPWESPLQTIKQSISGPVAF
                     VISLLAIIAAGAGLIWGGELSGFLKTLIYIVIIIALVVGANSFMSLFTTSGALI"
     gene            10951..11238
                     /locus_tag="ACHFOB_000370"
     CDS             10951..11238
                     /locus_tag="ACHFOB_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002838104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbD"
                     /protein_id="HFN5799204.1"
                     /translation="MEELHRVDIYSALNKPNLMLGADRELIMMTGLISASLIFTGATI
                     VTTIVGVVLFFICSLLLRLMAKSDPLMRQIFIRQNKYKKFYYPQSTPFSKD"
     gene            11240..13705
                     /locus_tag="ACHFOB_000371"
     CDS             11240..13705
                     /locus_tag="ACHFOB_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002823507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TrbE"
                     /protein_id="HFN5799205.1"
                     /translation="MLALKEFRSKAKAFPDILNYASFIDEGILLNKDGSLTAGFYYRA
                     GDISSMTISERNTLSARINAILNTLGNGWAVHIDCSRIKTENYIDGETFYKSNIAQIL
                     ENEKKHYFENVEHFENLFTMIFTYLPPHKNISKITNLMIIDENVNKNQSDKILEYFKT
                     TLQKLEDSLSNYIKIERMLPRVVTDEYNNEYILDDMLEYINFCICGERQKIILPNAPM
                     FLDCLLGGKHFETGMYPRIDNQYIGIIAIEGFPSESYPNILNALTELNFDYRFNTRFI
                     FLDHYEAEKSLNKYRKKWQQKTRGWLDQLLDRPTRKQDDHAVLMVQELDSALSESKSG
                     MIGYGYYTANIVVFDRDNENLEYKLKDIRRVLEGLGFLSRTETINSVEAYLGTLPGFV
                     YPNLRRPILNTLNLTHLIPLASVWAGEKYNPSDKFPPNSPPLMQVVTSGNTPFRLNLH
                     VSDLGHTLIFGPPGSGKSTLLANIFLAWQKYPNAKIYAFDKGQSLLAPTLATGGIHYN
                     IAGENSSLAFAPLANIKTESEIAWAEFWIETCLKLQNVNITPKHKKLIHEALISHTNT
                     NSTSLTEFVSALQDNDLRDALSYYTISGTGGFLFDSEQDKLSLSNVTTFEIEDLMSLG
                     DQYIVPTLLYIFNRIEKGLDGSPTLLIIDEAWIALNHPAFKDKIISWLKVLRKANVAL
                     VMATQSLSDSAKSGILDILQEYCPTKIFLPNPEAYKKGSENVLAPYDFYKIFGLNDVQ
                     IGIITNAIQKREYYYTSPLGTRLFNLALGKTNLAFTGISDKVSVKRVNQLYEQYKENW
                     AYKWLEEKEINYKRFDNSKKEQI"
     gene            13702..14355
                     /locus_tag="ACHFOB_000372"
     CDS             13702..14355
                     /locus_tag="ACHFOB_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbM/KikA/MpfK family conjugal transfer protein"
                     /protein_id="HFN5799206.1"
                     /translation="MKNFIFGITCLSVITSSNIFADDVLTGDTKLACEAILCLSSGTR
                     PAECGPSLARYFAIHFKKPWKTIDARKAFLNLCPIQNDTNVEDLVLKNLVDDVLPSSD
                     PRQCTPNYLNTQVETQRSYSTFGIMSYRINPNMPSFCYALINHQYTDYKMPKYTCTGE
                     FYNSLEWKLSAKLQLITQQVYQSLPDNQRYMISKTCGDRNCYEYYQKIPFTKECWTY"
     gene            14367..15170
                     /gene="trbJ"
                     /locus_tag="ACHFOB_000373"
     CDS             14367..15170
                     /gene="trbJ"
                     /locus_tag="ACHFOB_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbJ"
                     /protein_id="HFN5799207.1"
                     /translation="MKKSLFGVKKATSTIIATLIIGTNNAFAGGIPVIDLSAIANQVK
                     DYAMQLQQYEQLYQQLQQQLLMVKMQQQNLQNLGKYDWENLGTILYQVNNVMNQVNGL
                     SYDIGNVSKKFEDTYKDFTGYSDDLTNATNEKERYELYSDRYKQIAQTNQNTFKGTLQ
                     QLELQYQDLQNEDTIISKLKERSEGSKGNLQAIQATNDLITYQIDEVRKLRVTLMNQN
                     NMLTNYLASQNNKDVLEQTKLEKQMQSDSRVPYGIGKNQNYQTDALKWK"
     gene            15219..15497
                     /locus_tag="ACHFOB_000374"
     CDS             15219..15497
                     /locus_tag="ACHFOB_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HFN5799208.1"
                     /translation="MKHFIFGGLISLGALAFLIGCGDEAKTSEYYEKHIDEAKARVAE
                     CKKMEKMNETQQRDCSNAKWAVEMQSDSRVPYGIGKNQNYQTDALKWK"
     gene            15445..16671
                     /gene="trbL"
                     /locus_tag="ACHFOB_000375"
     CDS             15445..16671
                     /gene="trbL"
                     /locus_tag="ACHFOB_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_005023563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbL"
                     /protein_id="HFN5799209.1"
                     /translation="MELAKIKTIKQTPLNGNKLRLILIFCFLIPNLAFGAETAEGVLN
                     ILRNGLLSWTPLIKTACLWVFFTLVVIDLVWTFGLKALSGFEFGEFLATLIKKIIYIG
                     IFIFLFNVDYWLQIIFNSFSQLATNVNNGLDIYPSNIIQNAFKIVMIILKSMSVTSPG
                     ESFFKVISGIIILIAFVLMAIDLLIVYLKFFLMNVIIYFALALGGLNHFKQIGLNPIT
                     TAIKVGIELFMIQGLMGLCITIIEKTYNEMDQEISYEITLAVLVTSLIFCMITKMIPG
                     IIEAVFNGSIGESAGAAAGFRAVATMAAGAATGAAVGAVGVTRAMNAAKELHLAEGGK
                     GGMDLVKGVAKHLATSGGEHLRDNLTKGRMPHQMANRLQEKLKDIQGKASEGGISAGT
                     PKEESYQSGVNPDVAK"
     gene            17001..17696
                     /locus_tag="ACHFOB_000376"
     CDS             17001..17696
                     /locus_tag="ACHFOB_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="VirB8/TrbF family protein"
                     /protein_id="HFN5799210.1"
                     /translation="MNIFRQKQKIEKNEFDTSSNPYLNAKTEWLERYGDYITRAKNWQ
                     IVAMISLAMCFVCVLFIGYIGSQNKLIPYIVEVDKLGNTAKVGMVQNIDLKNPNVIKY
                     SLNTFIYSWRSVWGNPQTQRKFIFDAYTYVEPKSKAFNFLNEEYRKNNPFERATKENV
                     RVKIKNIVPQNIDTWQVEWEETTTNLNEDILSKETYRGLFQIKQIVPTTEEQILKNPL
                     GIFITDLNFAKIL"
     gene            17707..18867
                     /gene="trbG"
                     /locus_tag="ACHFOB_000377"
     CDS             17707..18867
                     /gene="trbG"
                     /locus_tag="ACHFOB_000377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002841939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009291 - unidirectional conjugation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-type conjugative transfer protein TrbG"
                     /protein_id="HFN5799211.1"
                     /translation="MKKFIFNTNTATREIHYTPTSGARLKSLDYNYTKEYNYNYDEFY
                     GIHLSSFRGLDFRHKGDDLVANTPKNYTQKLKKLSLIASLLLFIGSSVYANNLNERDF
                     ANLTPKEKKDLAIAQKWINSKTTTIQGNNGEVIFLYGEAMPSIVTAPLRLTDISLEPG
                     EVIKDVQIGDSIRWAISLSISGEEPYLVSHIIVKPTDKNLQTTMNIMTNKRVYRLNLI
                     SEAKKFMPAVSFNYTNQIIHTLEDYKNQMKAKSEAKNFYKTKDDEIPSNIENLDFGYS
                     IEGNAPFKPLRIYNDGIKTYIQMPKNLKFYEAPALMVLDSSNEKQIVNYRLKYDTFIV
                     DRLFNKAILLSNVGSKQEKITITKHSNKANQDIVNNVLYDLSLQNKNKKDNK"
     gene            18864..19301
                     /locus_tag="ACHFOB_000378"
     CDS             18864..19301
                     /locus_tag="ACHFOB_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799212.1"
                     /translation="MRILFLALIALFITSCAKVNSEYFTSSFSVKETKINYDKIADDF
                     SQFIISYYLPNKTTFYFNDINDNKAFSDYFVNTLRNKGYAISNDHSRKNLTFLSYQVS
                     QIDNENVIAIFNINESKINVIYKIIENKLVKINMTSFNFTPQN"
     gene            19312..20541
                     /locus_tag="ACHFOB_000379"
     CDS             19312..20541
                     /locus_tag="ACHFOB_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrbI/VirB10 family protein"
                     /protein_id="HFN5799213.1"
                     /translation="MLEINTSPNKFLPKNNKRLSKVPIIILFTIAVIVLFSVFYVALS
                     RKQNLEKQATQTAPKEETQSTSKIENIASYVDELSQTKQIKEQNSTLQPVNNTIPITQ
                     QVQQEIKPQPIQTPILMQNNEIDERELRLKKDMQLKALISQTSLGIKSEIQEKSTIGN
                     HFTPSQTDYPNIPNDQVNTSAGLGGLDTNANKDAQGQQFLSQKNDNGYLKHSKQKPLS
                     PYEIKAGWNIPAVLITGVNSDLPGQILAQVTQNVYDTSTGKYLLIPQGTKVVGAYSSN
                     IIYGQSRLLVAWNKLIFPNGDTLNIDSMQGTSQDGYTGFEDEVDNHYFRIFGSAFLLS
                     SITAGIALSDNSSTNGEKETASDKAISQAIQQMGQVASEMIRKNMNVSPTLKIRPGYK
                     FNIFVTKDIILEPLELR"
     gene            20637..20786
                     /locus_tag="ACHFOB_000380"
     CDS             20637..20786
                     /locus_tag="ACHFOB_000380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799214.1"
                     /translation="MSMLIPAWIVISILEIILMIAYFDNKKGIQNYKNNIELYKNLAK
                     DLNND"
     gene            20779..21324
                     /locus_tag="ACHFOB_000381"
     CDS             20779..21324
                     /locus_tag="ACHFOB_000381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglycosylase SLT domain-containing protein"
                     /protein_id="HFN5799215.1"
                     /translation="MIDIALIEQCKNPNVETQIIQKIIQIESNNQQFAININKIGSFI
                     PKTKDEAKTLTQSFINKGYSVDIGLMQFNSNNLKTPTFKNYSIDDLLDPCKNIKAGSD
                     IFYLAYEMTNENLAKEERINQALSIYNTGDLKKGFSNGYVAKYDSTAKMIDNLEEKAR
                     KSDTRIKIAYNLFNLQTQKKE"
     gene            21421..21783
                     /locus_tag="ACHFOB_000382"
     CDS             21421..21783
                     /locus_tag="ACHFOB_000382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002907809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HFN5799216.1"
                     /translation="MINNITIGGRLTADAELRHSNQGSIICTFTLANNRKYKEIENST
                     YIEVSLFGSFANAMHPYLKKGISVDVVGELTQDTWEHEGKIYSKHRIKAKEIDFRTPK
                     KEKQTIPNIEEGENYEGF"
     gene            21770..21910
                     /locus_tag="ACHFOB_000383"
     CDS             21770..21910
                     /locus_tag="ACHFOB_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002844662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799217.1"
                     /translation="MKDFRELETIPNFSYEIDPLTAEELGAFEENALSEEDAKEGIED
                     QG"
     gene            21915..24128
                     /locus_tag="ACHFOB_000384"
     CDS             21915..24128
                     /locus_tag="ACHFOB_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002846006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zincin-like metallopeptidase domain-containing
                     protein"
                     /protein_id="HFN5799218.1"
                     /translation="MKNKDFIQETADKIIESLKNGTAPWIKPWKGIDLANNMPYNPIT
                     NKPYNGINSINLMLQNYSDPRWLTYKQAQSINAQVKKGEKSTLIQYWQFSEIVDKLDE
                     EGNVITNEKGEVEQIEIKLENPKVFFAYVFNAEQIENMPKLEPKQEIDNFQIIKEAQK
                     ILDDSKAIIHHQGNRAFYNATNDTITLPPKENFLNESAYYATALHELGHWSGHSSRLD
                     RDLNNPFGSKEYAKEELRAEIASFLFNGKIGLDYDPGQHLSYIDSWVQILEDKPNEIF
                     KATSDATKIVNFIESLSLEQKQKIELENSNTQKQELTQDKELNLVTKKTYLYVPFEEK
                     ESAKKAGAKWDKEAKMWYAPKGTDLKNFNQWLNQSSLTPNYSNTHDEFKAFLEKYELN
                     IEGQPIMDGKLHRVSVIGDKGREKSGAYVGFLNGHPAGFVQNYKTGIKENWKSANSFE
                     NTKNQEINFKNAIEHNKAMKEAREKELAQAYEKTALKLEEEYNNAKWANSEHPYLKEK
                     GFDKNFYLKQDKNGNLLIPLRDIEGKYWATQRIFANGDKMIGATRTAEEKEQGIEYPA
                     KKQGNFFLLGAKNLDNVNEVYICEGFATSASVYEATKSPTIMGVDAGNLEIIVTSIKE
                     KYPKMNIIIAGDNDIKKELNGNKNVGKETALGIQKKYPEIKVVLPNFTNEESQKGLSD
                     FNDLMKSRGLEEIKKQLKEQIAKQLMAEKATTKALDKNKGINKEISTKKDIGISL"
     gene            24125..25948
                     /locus_tag="ACHFOB_000385"
     CDS             24125..25948
                     /locus_tag="ACHFOB_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002824096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HFN5799219.1"
                     /translation="MKKQTNQALVYMLGLIGIFLTFTIISQIATQYLAKSFNYSPSLG
                     ETLFYGFYNPFKWISWSYVYYSFYPDFFKKFFISMFAGIAFCFIVFILVKLAFLRKAK
                     AIENLHGSAHWATLEEVKESGVFDKDKGVYIGGFEHKKTLHYLRHDGPEHIMLFAPTR
                     SGKGVSLLLPTLLSWEESALIFDIKGELWALTAGWRQKYAKNKVLKLDPTCLDDSAVK
                     FNILEEIRLETMHEIKDTQNIAINLIFKGETPPTNPTQGSTSYFKSEAGNFLVSIILY
                     ALHLKKYRGENTPNLTDIYKFINDPNQSIDELLEEMVECDISTMDKNTQEIIQSISRS
                     MKNKATQELSGVIGTASETLNLYIDPILAKNTAKSDFKIKDLMNHDNPVSLYLIIPPG
                     QKDRLRPFFNLLINQIFRTLTDDSLSFKNGENVKRYKHKMLVLADELTMFGKLGVLEE
                     NLAYMAGYGMKFYGSIQDIQQLYSIYGEKETIISNCHIRIAFAPNKIETAKLLSEMGG
                     ITTIIKKSLTSSGKRTAVMLGNVSETIQEVQRPLITADECMRLPSAKKDKDDKIIAPG
                     DMLIFIAGQAPIYGKQILYFKDPAFSARSKVMLDKQISDIL"
     gene            25965..26684
                     /locus_tag="ACHFOB_000386"
     CDS             25965..26684
                     /locus_tag="ACHFOB_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002814348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraL"
                     /protein_id="HFN5799220.1"
                     /translation="MAKIHFVLNGKGGIGKSFISSLLCQYFLDKGESIVAIDTDPNNT
                     TLLNVKALKAKFLQLIDDEGKFDVRAFDKIVELAFEKKAKNYIIDSGATTFIPLIDYL
                     KENEVLDFLTSNSLEVFMHVPIVGGQARDDTILGLTQLTQAFNCSFVVWVNEYHGSII
                     KDDLEFEETKEYQAIKEKIKAIIYLNALSKDTFGKDLLELTSKNLTFGEAMQDKNFSL
                     MSKQRLKIFKDKAFIQIGNIL"
     gene            26776..27018
                     /locus_tag="ACHFOB_000387"
     CDS             26776..27018
                     /locus_tag="ACHFOB_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002804094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799221.1"
                     /translation="MQKQYPEVHSLEESLAILKKYKDDLTKEQYEGIKSVICGHAIED
                     MFANEKDVIDMIKIAKDEANADEIIAEYKREWGVND"
     gene            27011..27694
                     /locus_tag="ACHFOB_000388"
     CDS             27011..27694
                     /locus_tag="ACHFOB_000388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fic/DOC family protein"
                     /protein_id="HFN5799222.1"
                     /translation="MIDKVLKFLDDGIPKNDFDRQLLASNLVGATNLIELNKREREIT
                     LKKQLKLQLNPIKGNFDYQHLKDIHKALFEDVYTWAGQDRMQMGLKEKFAKYAPNGAI
                     INFVPGKELDKYSKIIFDELAKNNYLKNSKDLNHFAKNLAKFMGEINALHPFREGNGR
                     TQRIFLNELAKNAGYKLDLNLISKHKMIHACAEASQLKPGRLEALIKDNLKNFRQNLD
                     LEQNKGISL"
     gene            27699..28166
                     /gene="lepB"
                     /locus_tag="ACHFOB_000389"
     CDS             27699..28166
                     /gene="lepB"
                     /locus_tag="ACHFOB_000389"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002782960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFN5799223.1"
                     /translation="MRKTIAIFAFSFVFLLILSYLIFYFGGFHFNHTRSMPLGLYKEI
                     SSSIFNKNDIVLLKIPQKKEILLKKIVAINGDFVEVNRQGVFINKTLMPDSKIFSFDS
                     EGNPLEFKPFKCKLKENELFVMGENIKSYDSRYFGVINILQNEVKKVKSIILF"
BASE COUNT        10863 a         3675 c         4226 g         9415 t
ORIGIN      
        1 attagaataa aaggagaaaa aatgaattta ttaaataaaa aaattatttt agtctatgct
       61 atttatatag gcattattgc tttgatttat ttttttggaa aagatttttt gttagttttt
      121 gataatttaa aaaacttttt cttatcagta aatcctgctt attatatgct aagtttgcct
      181 ataagtatgt ttttcgtttt tattgtaata agcttcttgg aaaaaagggg aataaagggt
      241 gttttagtat atttattaac tgttattcca ttactttttt tattttttca ttattctaac
      301 gctaaattga gtgttgatta ccttaatagt gaagcaatgt ttattatttt cttaattctt
      361 ttttcttctc ttatcacacc agtggcaatt tatcaaatgt ttagagaaaa agaagaagtt
      421 gaaggttaag gagtaaaaaa tgatttcagt aacgctttta ttttttcttt ttggactaaa
      481 caaactaatg tgtggatttt tgtttaatgg caaaaataca atatacaaac tattaagtta
      541 cataaaaatt cacgcgattt tcattaattt aagaactcta ctttttttaa tattggtatt
      601 attggcattt aatgcggatt tatcttatat gggaacagtt ttatttctag ttgatttaat
      661 gacagctata tctatatttt ttgcttatgc tcaattagct tatggtttct caattaaaga
      721 ttgtatgttt tatcttgtgt gtggaaaaat agataaagaa tggttaaagg agatacaaaa
      781 atgactgaag aaaaattaat taaaaaagaa atattttctt atgcaatttt tatagcaatt
      841 atcgctttaa tttgcatttt taaaaatgaa atttgggaat ttgtaaaatt tattttttct
      901 aatttagatt tcatatgtgg taattttgca aattttgtaa gcgaagataa tataatattt
      961 tttccagtta caactctttt aatagtattt actatagcta tttgtgctgt ttggggatta
     1021 tctaatgttt tatctctctc attatttgta attcctattt ttgtcgcagt tttttatatt
     1081 tttaatattg atataaattt aaaaaacctt tatagctctt attttatatt tttaatcatt
     1141 attaatggtc ttttatggag tgcaaatcaa agatgaaaaa aattacactt atagcatatt
     1201 ttataatctt tttatcagga ttatggtttt tatttagtgc tattaaagag tattttggca
     1261 ttttatcttt tattcttgga atcgcactta tttattttgg tgttattaat ataaaaaaaa
     1321 tatcaaataa agtccataaa aataaaacgg agtttgaaac tctacttaat acaacaaatc
     1381 atatttttgc attgtttggt tctgtaatgc ttttagtatt tatcatcttt tttacatttc
     1441 aaaatgaaat aaatattaaa ttcttttcag atcaaggact tgttatagaa gatgataaaa
     1501 aaatatctat ttattttaaa tctaaagaag ttaaaacgct tgatagctct aaatatgagg
     1561 atatatcaac aatgtatagc gatgattatg ttaatgttat tttcaaaaat aaagatgata
     1621 atagtagctt aattctaaga tgtgatgaaa gtggctgtaa agaggagaaa aaatgagaga
     1681 aaatatatta ataaaaaaac tttatgtaga taacgacatt ataagagatt tatataaaaa
     1741 aagcttggat tttgctatta atgaaagaga aaaagccatt gattttttgt ataaaaaaac
     1801 aagtaaagga acatataatt tattatcaga aataaaaata actttggagt ctttagaaaa
     1861 ctccattaat gaaaatatga ttttatttgg aaaatttgct tttttcttta aaaatccaaa
     1921 atattatacg cgacaaagcc atcaaatcat cgcaaagata tcttcttgtt atgatttgct
     1981 cttgggttta ttttatcact atggtttttt tcaagatgag aaacaaataa atgatatttt
     2041 acataaattg tttgaagcct ttaaagtaaa aagcgatttt tctcttgatt ttcaaaatga
     2101 aagtccaaac gctaaattta aagaagtcaa attgtatttt gaacctcatt ttgctacttt
     2161 ttatgattat ttagagtttg aaaaatattt atatgagagt gaaaaagggg agtagatgaa
     2221 taaaaaagaa cttattgaag aaattgcaaa aaaacaccat ataatcttag atgaaaacga
     2281 tcctatatta gcagtcgtta gtgcaaatga aatcatcttt gatgattttt taaaaaaaat
     2341 agatctgctt ttcacaaaac acaaaacaga tttagaaagc tataaattta atatatttaa
     2401 tgagataaga gaatatagta aaagcaatca agaagcttta aaagatattt taatacaagc
     2461 acaaacaaat caaaacacaa ttaaaccatc gcaagaaaaa acagaagaca ctaaagaaaa
     2521 gaaaaataca aatattaatt tttggattat cgctattgct ggtcaaatta tttttcttct
     2581 tgttggttta atcataggga taacaatata atattatttt attatctttt taatattata
     2641 ttaatcttat tatgatatta tttaaatata aattaaaagc aaggtttaat tatgattata
     2701 tccgtagtaa atgaaaaagg cggtagtggt aaaactacat tagcagtaaa tctttccgca
     2761 agattagccg aagatggaga caatgtttta cttattgacg cagatccgca aaaatcaact
     2821 gaagtttttt cagacatgag aagtcaatca aacttagaac ctttattttc aaatgtttca
     2881 aaaacaggtg ttagtttagg cgatgaaatt aaaagaatga aaaatgcttt tgatagcatt
     2941 atagttgata caggcggtag ggatagtaaa gaaatgcgaa aagctatact ttcatcaaat
     3001 ataattatta ttcctacaat tccaagtcaa tacgatgtta atgttctaga tcatatgcta
     3061 gaaatttata atgaagtgat tgatattaat cctaatttat tagctttggt tttagtcaat
     3121 agggtttcac ccaatccttt tttagcaaaa gaattagaaa atttaaaaga atacattaac
     3181 gaaaccaaaa aagaaaaagg cttagataga gtaataatgc ttgaaagcgt aatctatgaa
     3241 agacaagctt atcgcaaagc agtaatagaa ggtaaaagca tgaaagaatt ttgcgataaa
     3301 aacgacaaag ctttaaatga ctttgaaaac ttttaccaag aacttttaaa aataacaaat
     3361 gaaaaactag gagtataata atgggattta aaaaactgag ttcagaaaca ccaaaaaatg
     3421 aaaatgactt tgttaattca gctcgaggag aaacaggaaa tgcaaaaact agcaatgcaa
     3481 aaagaaataa aaagcttgtg gtcaatttta cagaagaaga gtatcaaacc ttaaatcaag
     3541 aggctaattc aataggtttg agcttaaatt cttatgtaag atttaaaatt tttagaaagg
     3601 agtaaaaaaa tgtttttaga ttttataggc aaagtattta tatttataac aatataccta
     3661 atgactatat ttataataaa gtctcatatc gcagtgatca aaacaggttt tcaaagtttt
     3721 gattttaggt ttatttttat atataatata gcatttttag tttcagaata ttttatgttt
     3781 ctagcattct caaaatatat attaaattaa tattataata atatcacaat attattattg
     3841 tgatattaaa aattattcaa attaatatca ttacttttaa taacttctgc ctttttcaag
     3901 tattgatatt ttaaatcttt ttcaagtttt tttgcatact tttccattat gtcaatattc
     3961 ttatcgctta acatagaaat aacatttgcc actttactaa ttttgctttc ttgcattgaa
     4021 aatcttttta catactcatc agcatcaatt tttctatttg tataaaatcc cttggcaata
     4081 tctgttattt tattagtatt taaaaataaa tgctcgaatt tttcaaactt ttttatctct
     4141 ttatcatcga ttaaagcttg ttttatttct tcattcattg caataagccc ttctttattg
     4201 atagaattta caacaaaacc ttcaatttga gtatcaatgc tttgtatatc catagaattg
     4261 atttcatcgg aactaaaacc tatttttttc aattctgctt caaataccga aagtgtagta
     4321 ttcgagactt ttttaagaat agcttttaaa gcttttaatt ctttttcttt aatattttct
     4381 tttatgcctg gttcatcttt aataagtttg atttttaact caacaatatt ttttaaaatc
     4441 tttctagact tcatttcttg gcgtttatca ttattgcttt cttgtatctt ttgcatttgc
     4501 ggatctgtaa aactcacatt taaattataa tcatttgcga cttctaaaat atttctttta
     4561 aaattctcat ctcctgtaat attaagatga tttccaaatc tatcaatcgc cataagtaaa
     4621 gaatttaaaa gaaattcttt atcatctttg ccgttttgaa taagggatac ttttaacatt
     4681 tctcctttat ctatggcttt attaaaaccg cttttatata cagcataacc ttcttttgtt
     4741 atataatcta cattttcaaa gattttaggt ttttcctggg ttgatgataa agtgttttca
     4801 ttttcattaa ttttcgtttt agatcttcgt aaagcccttg tagcctcttc gtttcctgat
     4861 aaggattcat taattaaaaa atctctataa gacactcttt tatatttttg ataaagctct
     4921 ttttgtttgt ttttaaaaat cattctttgg tttttaacat gtgcaaaagt gtttttatta
     4981 aatttcattg atggtattga ggttttaaat tcattgcgtc taagctttaa cattctaagt
     5041 tctttgtcaa gctctgcttt tttctcattt tcaattctta aatacttttc ccacaatgct
     5101 ttagaagttt ctttatttgg tcgttggtat cgctctttta tttcccgttt ttcttcttca
     5161 atgttttgtg tattctcttt ttcttgtttt aaatctaatt ctttaaatct tttctctaaa
     5221 gcttgtttag ataattccct atggatacta cttgctttgc aaaacaattt ttcactctta
     5281 gaagcaataa caaaaccttt tcttctttct ctaaattcaa gatcatattt agctaaaagt
     5341 tgtttaatgt ctttaaaagt ggtcttttca tcttttaaca taagatctac ttgtttagaa
     5401 agcttttctt ttacccaggt ttcaaaattg caattcatag tatggatatt atatttattg
     5461 ctttgcttgt ctttttgtga aatatggtta tctaacttta aattatactg cttttcaagt
     5521 ttcatcgctg tttcttgtaa aattttagca tcattgtaag gattaacaac ttttagagtg
     5581 cgtggattaa ttttattaat tgcgatatgt atgtgaagat tatttgtatt agaatgaatt
     5641 acacttaatc tttgatgatc actcattcct aaagactttg cgatttcctc ttcaatcgct
     5701 tgtaaaattt ccaaagtagg tttttcgtct tcttgaaaag aaactactaa atgcaaggtc
     5761 ttatcctgct ttgttgtggt attaagcttt tgagtgttga taatctcgtt aatattatcc
     5821 tcatcattat caaaagaaca atttgtaaaa tggtaacctt ccactttatc catttcattg
     5881 tttttatcaa gcatataatc aaccaatact tttgcattat tattgtcttt gtctaaaata
     5941 tagtttgata aatttttaaa acttgattta ttctgttttt tgcttggaat ctttttgatt
     6001 atcattttgt attatccttt tggcttgttc ttttaagagt atttgcaaat ctaaaatttg
     6061 atccacaatc tcatcaatat cttcataaga tcttttattt gaaaaattgg ctttattatc
     6121 ttcatttcta accaaccaat gtttaaaaag tccgcccaat cttcctatat cacccgcaat
     6181 atttaaaaca tcgtgtgcga ctttttgatc tattatgcaa gtaataggat aattcatcga
     6241 taaatcacgc aaatatcttg aaagtgttaa gccgtgattt tgtgcttttt ctgttaaaag
     6301 gttatattct tctaaagtca gtctaatatt tacctgtttt gtttttttca ttttggcgtc
     6361 ctattttaga gctttagcga taaaactttg cttttgtata gcaaaagcat atcctgtctt
     6421 attactccaa gcaattataa caaaatataa gctattttta caaacatttt aatcatttta
     6481 ctaaaataca ctataatttg ctaaaatata ctaaaatatc ttataatata ttatttaaaa
     6541 aggttgcata atgaaaagag gttttgcaaa aatagaattc ttcgctaatt tagaatactt
     6601 aaaacaagaa tataataaag gctatgtagt ttctaaaata ctttatgaaa aagcaaagca
     6661 agataaaaat atatcaatgg tttattcaca atttaataaa tacttcaatg aagtttttaa
     6721 aaataaaata gagaaaaaag aaataacaca ggaaaataat caatctttag ctttggaaaa
     6781 taaagagcct atcaaagtaa aaattgatac aaaatcaaaa aaagtatttg acgctaaatt
     6841 tggaaaagat atcaaagaag atgatttatt ataaatctga aacttctgca attctagcat
     6901 taaaacaatt caaatagcca gtcttacttc ttttaaattt aacagctaaa attctattat
     6961 tttcaaaaga attctccata tattctcgaa aattaaaatc tccgctccta ctaaaatatt
     7021 tattactaaa gaaaacacta aaataaaact ctatatttgt cccaagatca acacaattga
     7081 taagtatatt tgctttttta ccccacttga tattattaac aaaaatatat aattcattat
     7141 ctaaatttag atttttagtt ttttcactta atttttcaat tctttctttt ttactctttt
     7201 ccatttaagt tcctttaaaa atcttaacaa ttataaaaaa caaagcttaa cgccaaaaat
     7261 aaaaatgttt aagaaaacta aaaacttaaa tgattagaaa cctattttac cattacttta
     7321 agttttaaag aaaaacactc taaacttaaa aagaaatatt tttatttgta aaaagcttat
     7381 attatcgata atcaaagcaa ttaaacctta gtttgaaaac tctacttttc aaatcataac
     7441 ttctttttgg tgtatatagt aaattgcacc tgttaaggtg ctataatttg cataaatata
     7501 gggtgcgggg tgtgcagtcg cctagagcga caaacgaact tgaccccgcc ctattgttgt
     7561 aagaagagta agagacgctt agtctcttca aatttgcaaa tgagcgttag cgaaatttgc
     7621 tgtaaaaaat tatgtttcca aataaattgg gaaaaaattg ctttttttgc ttaaatatgt
     7681 ttcatttttt gggaaaattg gaaattgttt ttgaatttgt aagaatagat atagaagaga
     7741 tagcttaatt aaaaatgctt ttaaatatct attttatagt gctttgaagc acttttaatc
     7801 tgtctcatca gtgagacaaa gcgtctcatc agtgagacaa gttagctcac ctgtgagacg
     7861 gattaaagtt actttgtctc aaattatgat acaatatttt atattttata aaatatttat
     7921 tgctttttgt ctcaaattat gatacaatat tttatatttt ataaatcaga ggaataagat
     7981 atgaataatg aaatagaaat taaagattta aatgaaatta ataaaaataa caaacagcaa
     8041 gtagtttata gaaaagataa tctatctact gattgtatta ctggtgaagt tatagaaaga
     8101 aatcaaatta ttgttagaaa agttcaaaca agagaaagtt ttattaaact ttttactgaa
     8161 aatattcatt atattattaa tttagaacct caagaaaaaa ctttattttt tacattgctt
     8221 tcttcagtag attataaaaa tgttgtaaga tttgataaat ctatgaaaca aaatattatt
     8281 ttagacaaag ttttaagtag agctggaatg tatagagctt taaatggatt aatagaaaag
     8341 aaagtaattt ttaaaataga tcgagatttt gttaaatcgt atgctggtgt tggtagtgat
     8401 gattgttatt tatttaatcc aaatttagta ggacgtggat cttggaatga tttaaaaaat
     8461 ttaagacata ctattactag agaatgggat tttgaaaatt tagaagttag agaaaattta
     8521 gaaatagaag aagaatatct aggtcttgat gaaataaaaa acaatcaaaa gcaatatcaa
     8581 gtaaaagaaa taaatcaaga acatgatgaa acgactaaag taaaaaatac agaaattgtt
     8641 attgaagaaa aaaataactc tgcaaataat caatatagct tcgataaaaa agaagagccg
     8701 agcataaata aaaaagtctt aatctctaat gatacacaac cttctttatt cgatgaaaat
     8761 caaaaagaac gagaagctag actatttgta gaaaaatatg ctgggatact tactggtgga
     8821 tttgatccta caaaatccgc caaagaatta aaaagagaaa aattagataa agatttggaa
     8881 gaaggtagaa tataaaaatg aaaaaagttt atttagatac aaatattttc ctagattact
     8941 tcaatgctga aagaacttat cataatgaag ctaagcaatt gatatatttt ttaattgcaa
     9001 ataacattca aatagttttc tctgaagata tgatttctac tattgcttat cttattaaaa
     9061 aagaaaattt aaataatttc actcattttt taaaagatat ttcattagaa aaagatttta
     9121 atattgcatc ttttggtgca agtgtcatta atatggcttg tgattattat gataaatacc
     9181 gaggagactt tgaagactat ttgcaatatt tttgtgctga aaaagaaggt tgctgtgcaa
     9241 tttatactat ggataaaaat tttccaaatt taaaaatacc tataaaaaga tatggcgaga
     9301 ttgatatcta aactctattt tgtctcaaga aaatgaaaaa aatagaaaat tttttataaa
     9361 aaatgtatat ttttttacca aaaaatgaga caaaagcaaa aaatctatat tttgtctcaa
     9421 gaaaatgaaa aaaataaaca ttcaattgtt aaaaatgtat cattttatta gaaaaaaacc
     9481 ttgacaatta aattaaaaat aatataataa cggtattagt ttttaatttt tggagaattt
     9541 tttgagaaaa aataaactta atttttactt aatagctaga gagagagaga gagagagaga
     9601 gagcagaata atcttaaact tttcttaatt tttaaacttt tacaactcca caatccatac
     9661 aaaaaaaatc ctgacaaatt tttaactctt gtaattgaat caaaaggact cttcaatggg
     9721 taatcttgag tttcaagcaa ggatcaatga aaaaataaaa agagaatttg gcgatatttt
     9781 aactcattta gaagataaag aaacaataga gcttatgcta aattcagacg gcaaactttg
     9841 gcttgaaaag ctaggtcaag atatgatatg tcttggcgaa ttttcagaag ctaaagcaaa
     9901 atctatcatt accgcagttt ctacccttct tgatacaacc acaaatgcag aaaatcctat
     9961 tttagaatgt gaattgccac ttgatggatc aagatttgaa gctctattgc ctcctattgt
    10021 tgcaaaaccg accttcacaa ttagaaaaaa agctgtaaaa atctttactc ttgatgatta
    10081 tgtagaatct aagatcctca caccaaaaca aaaagaagtt ttaatcaatg ctattaaaga
    10141 acgccaaaat attttagttg ttggtggaac tggtagtggt aaaaccactt tttcaaatgc
    10201 cattattgac ggcatttcta aaatcacacc cgagcataga atagtaatca ttgaagatac
    10261 tgcagaactt caatgtgcga gtgagaataa agtaatttta agagctacgg ataaagtaga
    10321 tatgcttagg cttttaaaag ccacaatgcg acttcgtccc gatagaatta tagtaggcga
    10381 aacaagaggg aaagaggctt tagacttatt aaaagcttgg aatacaggac accctggagg
    10441 aatagccaca atccatgcta attctgcgaa tgggggactt acaagaatgg aacaattaat
    10501 ctctgaagca acaagtgcaa agatgagcaa attaattgct gaagctgtga atttaattgt
    10561 ttttatctca aaaactaagg agggcagaaa aataaaagaa atcataaaag taattgatta
    10621 tgaaaacgac aaatatatta cacaaggagt ttaaatgaaa aaatttttac tattattttt
    10681 aatattaggt ctaggttatg cactagcttc aactacaggt gctggtttgc cttgggaaag
    10741 tccattacag acaatcaaac aaagtatcag tggtccggta gcttttgtta tttcgctttt
    10801 ggcgataatt gctgcgggtg ctggtttaat ttggggagga gagcttagcg ggtttttgaa
    10861 aactttaatc tatattgtaa ttataatcgc tttagttgta ggagctaata gctttatgtc
    10921 cctattcaca acgagcggag cattaattta atggaagagt tacatagagt agatatttat
    10981 agtgcattga acaaaccaaa tttaatgctt ggtgcagata gagaactaat tatgatgaca
    11041 ggtcttattt ctgcatctct aatttttaca ggagcaacaa tagttactac tatcgttgga
    11101 gttgtattgt tttttatctg cagtcttctt ttaagattaa tggcaaaaag cgatcctctt
    11161 atgcgtcaaa tttttatacg ccaaaataag tataaaaaat tttactatcc gcaaagcaca
    11221 ccattttcaa aggattaaaa tgttagcact taaagaattc agaagtaaag caaaagcatt
    11281 tcccgatatt ctaaactatg caagttttat agatgaaggt attttactta acaaggacgg
    11341 gagtttaaca gcaggatttt attatcgtgc tggagatatt agttctatga ctataagtga
    11401 aagaaatact ttaagtgcta gaattaatgc aatattaaat actttaggta atggctgggc
    11461 ggttcatatt gattgctcaa gaattaaaac agaaaattat attgatggtg aaacttttta
    11521 taaaagcaat attgcacaaa ttcttgaaaa tgaaaaaaaa cattattttg aaaatgtaga
    11581 acattttgaa aatcttttta caatgatttt tacttattta cctccacata aaaatataag
    11641 taaaatcact aatttaatga taattgatga aaatgttaat aaaaatcaaa gcgataaaat
    11701 attggaatac tttaaaacta ctcttcaaaa actagaagat agtttgagca attatatcaa
    11761 aatagaaaga atgctaccaa gggtagttac tgatgaatat aataatgaat atattttaga
    11821 tgatatgctt gaatatatta atttttgtat ttgtggtgaa agacaaaaaa taatattacc
    11881 aaatgcccct atgtttttgg attgtttgtt gggcggaaaa cattttgaaa caggaatgta
    11941 tccaagaatt gataatcaat acataggaat tattgctatt gaaggttttc caagtgaaag
    12001 ttatccaaat attttaaatg cacttacaga gcttaatttt gactatagat ttaatactag
    12061 atttattttt ttagatcatt atgaagctga aaaatcactt aataaatatc gtaaaaaatg
    12121 gcaacaaaaa acaagaggtt ggttagatca attattagat cgccctacaa gaaaacaaga
    12181 tgatcatgct gtgcttatgg tgcaagaact agattctgca ttatcagaat caaaaagcgg
    12241 tatgataggg tatggttatt acactgctaa tattgtagtt ttcgatagag ataatgaaaa
    12301 tttagaatat aaattaaaag atataagaag agttttagaa ggtttaggtt tcttatcaag
    12361 aactgaaaca attaattctg tagaagctta tttgggaact ttacctggat ttgtttatcc
    12421 aaatttacgc cgtcctatat taaataccct taacttaaca catttaattc ctttggcgtc
    12481 tgtttgggca ggagaaaaat ataatccaag cgataaattt cctccaaatt ctcctccgct
    12541 gatgcaagtt gtaacttctg gcaatacgcc ttttaggtta aatttacatg tcagtgattt
    12601 agggcatact ttaatttttg gtcctcctgg gagtggtaaa tcaactcttt tggcaaatat
    12661 tttccttgct tggcaaaaat atccaaatgc taaaatttac gcatttgaca aaggacaaag
    12721 cttactagct cctacactcg caacaggtgg aattcattat aatattgcag gagaaaactc
    12781 atctttggcg tttgctcctt tagcaaatat caaaacagaa tctgagattg catgggctga
    12841 attttggatt gaaacttgtt taaaattgca aaatgtcaat attacaccaa aacacaaaaa
    12901 attaatacat gaagctttaa tttctcatac taatacaaat tctacttctt taactgaatt
    12961 tgtatcagca ttgcaagaca atgatttaag agatgcttta agttattaca caatttctgg
    13021 aacaggtggt tttttatttg attcagaaca agataaatta agtcttagta atgttacaac
    13081 ttttgaaata gaagatttaa tgagcttagg tgatcaatac atagttccta ctttacttta
    13141 tatttttaat cgtattgaaa agggattaga tggaagccct acattattga ttattgatga
    13201 agcatggatt gcattaaatc acccagcatt caaagataaa ataattagtt ggcttaaagt
    13261 tttaagaaaa gcaaatgtag ctcttgtaat ggctacacaa agtttaagtg atagtgcaaa
    13321 aagtggaatt ttagatattt tacaagaata ttgccctact aaaatatttt taccaaaccc
    13381 cgaagcttat aaaaaaggaa gtgaaaatgt tttagcccct tatgattttt ataaaatatt
    13441 tggacttaat gatgttcaaa taggaattat tactaatgct attcaaaaaa gagaatatta
    13501 ttacacttct ccacttggaa ctaggctttt taatctagca cttggaaaaa ctaatttagc
    13561 ctttacaggt attagcgata aagtaagcgt taaaagagta aatcaacttt atgaacaata
    13621 taaagagaat tgggcttata aatggttaga agaaaaagaa ataaactaca aaagatttga
    13681 taattcaaaa aaggagcaaa tatgaaaaat tttatttttg gaataacttg tttaagtgtt
    13741 atcacatcaa gcaatatttt tgctgatgat gttttaactg gggatacaaa attggcatgt
    13801 gaagcgattt tgtgcttaag tagcggaact cgtcctgctg aatgcggtcc ttcgttagct
    13861 agatattttg caatacactt taaaaaaccc tggaaaacaa ttgatgcaag aaaagctttt
    13921 ttaaaccttt gccctataca aaatgataca aatgtagaag atttggtatt aaaaaattta
    13981 gttgatgatg tattgccaag ttcagatcct agacaatgca caccaaatta tttaaacaca
    14041 caagtagaaa cacaaagaag ttattctact ttcggtatta tgagttatag gattaatcca
    14101 aatatgccta gcttttgcta cgcactaata aatcatcaat ataccgacta taaaatgcct
    14161 aaatacacat gcacagggga attttataat tctttagaat ggaaactaag tgcaaaatta
    14221 caacttataa ctcaacaagt ttatcaaagc cttccagata atcaaagata tatgatttct
    14281 aaaacttgcg gggatagaaa ttgttatgaa tattaccaaa aaatcccatt cactaaagaa
    14341 tgctggactt attaaaagga gtagatatga aaaaatcttt atttggcgta aaaaaagcca
    14401 cttcaacaat aattgcaact ttaattatag gaactaataa tgcctttgca ggtggtattc
    14461 ctgtaattga tcttagtgct attgctaatc aagtaaaaga ttatgcaatg caacttcaac
    14521 aatacgagca actttaccag caattgcaac aacaacttct catggtaaaa atgcaacaac
    14581 aaaacttaca aaacttgggt aaatatgatt gggaaaatct aggcacaatt ctttatcaag
    14641 ttaataatgt gatgaatcaa gttaatggtc tttcttatga tataggcaat gtttctaaaa
    14701 aattcgaaga tacttataaa gatttcacag gttatagcga tgatcttaca aacgccacaa
    14761 atgaaaagga aagatacgaa ctttattctg atagatataa acaaattgca caaacaaatc
    14821 aaaatacatt taaaggaaca ttacaacagc tcgagcttca atatcaagac ttacaaaatg
    14881 aagacactat tatttcaaaa cttaaagagc gttcagaagg ttctaaagga aatttacaag
    14941 caatacaagc cactaatgat cttatcactt atcaaattga tgaagtaaga aaattaagag
    15001 ttactttaat gaatcaaaat aatatgctta caaattattt agcgtcgcaa aataataaag
    15061 atgttttaga gcaaactaaa ttagaaaaac aaatgcaatc cgatagtcgc gttccttatg
    15121 gaattggcaa aaatcaaaac tatcaaacag acgcccttaa atggaaatag aataatgtta
    15181 aaatactatg tttcaaaatt ttataaaagg agataacaat gaaacatttt atttttggtg
    15241 gattaataag cttaggtgct ttagcttttt taataggttg tggtgatgaa gcaaaaacaa
    15301 gtgaatacta tgaaaaacac attgatgaag ctaaggctag agtagcagag tgtaaaaaaa
    15361 tggagaaaat gaatgaaact caacaaagag attgttctaa cgcaaaatgg gcagttgaaa
    15421 tgcaatccga tagtcgcgtt ccttatggaa ttggcaaaaa tcaaaactat caaacagacg
    15481 cccttaaatg gaaataaatt aagattaatt ttaatttttt gttttttaat tccaaattta
    15541 gcttttggag ctgaaactgc agaaggtgtc ctaaatatat tacgcaacgg gcttttatca
    15601 tggactcctc ttattaaaac cgcttgttta tgggtatttt ttactttagt cgttatcgat
    15661 ttggtttgga cttttggttt aaaagcttta agcggttttg aatttgggga gtttttagct
    15721 acccttatta aaaaaatcat ctatattgga atattcatat tcttatttaa tgtagattac
    15781 tggcttcaaa tcatttttaa tagcttttcg caattggcta caaatgtaaa taatggactt
    15841 gatatttatc caagtaatat tattcaaaat gcttttaaaa ttgttatgat aattttaaaa
    15901 tctatgagtg taacaagccc tggagaaagt ttttttaaag ttatttctgg aattattatt
    15961 ttaatagctt ttgtgcttat ggcgattgat ttgcttatcg tatatctcaa atttttctta
    16021 atgaatgtaa ttatatattt tgctttggcg ttaggtggtt taaaccattt taaacaaata
    16081 ggcttaaatc ctataacaac agccattaaa gttggaatag aactttttat gatacaaggt
    16141 ttgatgggat tatgtattac aataatagaa aaaacatata atgaaatgga tcaagaaata
    16201 tcatatgaaa ttacattagc tgttcttgtt acctctctca tcttctgcat gattacaaaa
    16261 atgattcctg gtattataga agctgtattt aatggtagta ttggagaaag tgcaggagct
    16321 gctgcaggtt ttagggctgt tgccaccatg gcagcagggg ctgctacggg tgcagctgta
    16381 ggagctgtcg gtgttactcg tgccatgaac gcagctaaag agttgcattt agcagaaggt
    16441 ggtaaaggtg gaatggatct agttaaaggc gtagcaaaac atttagcaac ttctggagga
    16501 gagcatttaa gagataatct tacaaaaggc agaatgcctc atcaaatggc taatcgctta
    16561 caagaaaaac ttaaagatat acaaggaaaa gcaagtgaag gcggtatatc agcaggaaca
    16621 ccaaaagaag aaagctatca atcaggagta aatcccgatg ttgcaaaata ataaaactaa
    16681 cgcaagggtg gtaagtcctt gcattagcgt ttcacaaacg gcgataattt actttttagg
    16741 cttaaaaaag atttttctta tttcttctct aaaaagtgta attactactg caattaccgc
    16801 aatgaaaaga ttaaaaagtt ccattatgga ctcctgtaaa ataaagtgtt tccaccccaa
    16861 gcccaactta atagccaaaa aaaaagctca attcctattg aaagaattga gccaaacaca
    16921 ttataaacag gttgtgaaac ttttagtcca tctaccaaat ggattaaatt aattatatca
    16981 taaaaaggag taaaaaaata atgaatattt ttaggcaaaa gcaaaagata gaaaagaatg
    17041 agtttgacac ttcaagcaat ccttatctta atgcaaaaac cgaatggcta gaaagatacg
    17101 gcgattatat cactcgtgct aaaaactggc aaattgtagc gatgatcagc ttagctatgt
    17161 gcttcgtatg tgttctcttt ataggctata tcggctctca aaacaaactt ataccttata
    17221 ttgtagaagt tgataaacta ggaaatacag ctaaagtagg catggttcaa aatattgatt
    17281 taaagaatcc aaatgtcata aagtatagtc taaatacttt catttattct tggcgttctg
    17341 tttgggggaa tccacaaact caaagaaaat ttatatttga tgcttacaca tatgtagaac
    17401 caaaatctaa agcatttaat tttttaaatg aagaatatcg taaaaataat ccttttgaac
    17461 gagcaactaa agaaaatgtg cgagttaaaa ttaaaaatat tgtccctcaa aatattgata
    17521 cttggcaagt tgaatgggaa gaaacaacta caaatttaaa tgaagatatt ctttctaagg
    17581 aaacttatag aggattattc caaatcaaac aaatcgttcc tacaactgaa gaacaaattt
    17641 taaaaaatcc tttagggatt tttattacag atcttaattt tgcaaaaatt ttataaggag
    17701 ttaaatatga aaaagtttat ttttaataca aatacagcca caagggaaat ccactacacc
    17761 ccaacaagtg gggcaaggct aaaaagcctt gactataatt atacaaagga gtataattac
    17821 aactatgatg aattttatgg cattcatctt agctccttta ggggcttaga ttttcgccac
    17881 aagggtgatg accttgtggc aaacacccca aaaaattata ctcaaaaact caaaaaactt
    17941 tctttaattg cgtctttact tttatttatt ggtagtagtg tatatgctaa caatctaaat
    18001 gaaagagatt ttgcaaatct cacaccaaaa gaaaaaaaag atttagcaat agctcaaaaa
    18061 tggataaatt caaaaaccac tactatacaa ggaaataatg gagaagtaat ttttctttat
    18121 ggcgaagcta tgccaagcat tgtaactgca cctttaagac ttactgatat ttctttagaa
    18181 cctggagaag tgattaaaga tgttcaaata ggcgatagta taagatgggc tatatcttta
    18241 agtattagcg gggaagaacc ttatttagtt tctcatatta tcgttaaacc tacggataaa
    18301 aacctacaaa caaccatgaa cataatgaca aataaacgag tttatcgctt aaatttaata
    18361 tctgaagcta agaaatttat gcctgcagtt tcattcaatt atacaaatca aatcattcat
    18421 acactagaag attataaaaa ccaaatgaaa gcaaaatctg aagctaaaaa tttctataaa
    18481 acaaaagatg atgaaattcc aagcaatatt gaaaatttag actttggtta tagtattgaa
    18541 ggtaatgcac cttttaaacc tttaagaatt tacaatgacg gcataaaaac ttatattcaa
    18601 atgccaaaaa atttaaaatt ctatgaagca cccgcactta tggttttaga ttctagtaat
    18661 gaaaaacaaa ttgtaaatta tcgcttaaaa tatgatacat ttattgtaga tagacttttt
    18721 aataaagcaa ttttactttc aaatgtaggc tcaaaacaag aaaaaattac aatcacaaag
    18781 cattctaaca aagccaatca agatatagtc aataacgtgc tttacgattt atcacttcaa
    18841 aataaaaata aaaaggataa taaatgagaa ttttattttt ggcgttaatc gctttattta
    18901 taacttcatg tgcaaaagtc aattcagaat attttacttc tagcttttcg gttaaagaaa
    18961 caaaaataaa ttacgacaaa atcgctgatg atttttcgca atttatcatt tcgtattatt
    19021 tgcctaacaa aactacattt tatttcaatg atataaatga caataaagca ttttcggatt
    19081 attttgtaaa tacattaaga aataaaggtt atgcaattag caacgatcat tcgagaaaaa
    19141 atttaacctt tctaagctat caggtttcgc aaattgacaa tgaaaatgta attgcaatat
    19201 ttaatatcaa tgaaagtaaa atcaatgtga tttataaaat cattgaaaac aagcttgtaa
    19261 aaataaatat gacaagtttt aattttactc cgcaaaatta aaggttgaat tatgcttgaa
    19321 attaatactt caccaaataa atttttacca aaaaataata aaagactttc taaagtccct
    19381 attataatat tatttactat tgctgtaatc gtattattta gcgtatttta tgtagcttta
    19441 tcaagaaaac aaaatttaga aaagcaagct acacaaactg caccaaaaga agaaacacaa
    19501 agcacaagta aaattgaaaa tattgcttct tatgttgatg aattatcaca aactaaacaa
    19561 ataaaagaac aaaactcaac cttacagcct gttaataata ctatccctat cactcaacaa
    19621 gttcagcaag aaatcaagcc tcaacctata caaacaccta ttcttatgca aaataatgaa
    19681 atagatgaaa gagaattaag attaaaaaaa gatatgcaac ttaaagcttt aatcagccaa
    19741 acttctttag ggattaaaag tgaaattcaa gaaaaatcaa caataggtaa tcattttacc
    19801 ccttctcaaa ccgattaccc taatattcca aatgatcaag tcaatacaag tgcaggatta
    19861 ggtggattag ataccaatgc aaataaagat gcacaaggtc agcaattttt atcacaaaaa
    19921 aatgacaatg ggtatttaaa acactcaaaa caaaaaccat taagtcctta tgaaattaaa
    19981 gcagggtgga acattcccgc tgttttaatc acaggagtta attccgattt accaggtcaa
    20041 atattggcac aagtaacaca aaatgtttat gatacttcaa caggtaaata tcttttaatc
    20101 ccacaaggca ctaaagttgt aggagcttat tcaagcaata tcatttatgg acaatcaagg
    20161 cttttagtag cttggaataa acttattttt ccaaatggag atacattaaa tatcgatagt
    20221 atgcaaggaa cttcacaaga tggatataca ggatttgaag atgaagtaga taatcattat
    20281 tttagaattt ttggttctgc atttttactt tcttcaataa ctgcaggaat tgcattatct
    20341 gataattcta gcacaaacgg agaaaaagaa accgcttcgg ataaggctat ttcccaagca
    20401 attcaacaaa tgggacaagt tgcaagtgag atgataagaa aaaatatgaa tgttagccct
    20461 actttaaaaa ttcgtcctgg atataaattt aatatctttg taactaaaga tattatttta
    20521 gaacctttgg agcttagata atgaataaat tgttaaaaga gcgtagaatt attatttttg
    20581 gtaatttatt ttgtattttt attttggtgt tttttactta tattaattgg aacaatttgt
    20641 caatgttaat tcctgcttgg attgttataa gtattttaga aataatttta atgattgctt
    20701 attttgacaa taaaaaaggc attcaaaatt ataaaaataa tattgaactt tataaaaatt
    20761 tagcaaagga tttaaacaat gattgatatt gctttaattg aacaatgcaa aaatccaaat
    20821 gtagaaacac aaatcataca aaaaattatt caaatagaaa gcaataatca acaatttgca
    20881 attaatatta ataaaatagg atctttcatt ccaaaaacaa aagatgaagc aaaaacacta
    20941 acgcaaagct ttatcaacaa aggttatagc gttgatattg gcttaatgca atttaattca
    21001 aataatctta aaactcctac atttaaaaat tatagcattg atgatctttt agatccatgt
    21061 aaaaatatta aagcgggtag tgatattttt tatttggcgt atgaaatgac aaatgaaaat
    21121 ttagcaaagg aggagcgtat aaatcaggca ttaagtattt ataatactgg agatttaaaa
    21181 aaaggatttt ctaatggcta tgtagctaaa tacgattcaa cggcaaaaat gatagataac
    21241 ttagaagaaa aagcaagaaa atcagataca agaattaaga ttgcttataa tcttttcaat
    21301 ttgcaaacac aaaaaaagga gtaaaaatgg aaaatgaaaa tttggaagag aataaaccta
    21361 cacaatttga tgataatgag ccaagcttat ttgataactt agaagatgag gaacaagata
    21421 atgattaata atattacaat aggcggaaga ttaacagctg acgctgaatt aagacacagc
    21481 aatcaaggta gcataatatg cacttttact ttagcaaata atagaaaata taaagagata
    21541 gagaattcaa cttatatcga agtatctctt tttggttctt ttgctaatgc catgcaccca
    21601 tatttaaaaa aaggcatttc agttgatgtg gttggagaac taactcaaga cacttgggag
    21661 catgaaggaa aaatttactc aaaacaccga ataaaagcaa aagagataga ttttagaaca
    21721 ccaaaaaaag aaaaacaaac aatacctaat attgaagaag gagaaaatta tgaaggattt
    21781 tagagaatta gaaacaatac caaatttcag ctatgaaatt gatccactaa ctgctgaaga
    21841 attaggtgca tttgaagaaa atgctttaag tgaagaagat gccaaagaag gcatagaaga
    21901 tcaaggataa ctctatgaaa aacaaagact ttatccaaga aacagctgat aaaattatag
    21961 aaagtttaaa aaatggaact gcaccatgga ttaaaccttg gaaaggtatc gatttagcta
    22021 ataacatgcc ttataatcct attacaaata agccttataa tggcataaat agtattaatt
    22081 taatgctaca aaattatagt gatcctagat ggcttactta taaacaagca caaagtatta
    22141 atgcacaagt taaaaagggt gaaaaatcta ctttaattca atattggcaa tttagcgaaa
    22201 tagttgataa attagatgaa gaaggcaatg ttatcacaaa tgaaaaagga gaagtagaac
    22261 aaatcgaaat aaaattagaa aatcctaaag tatttttcgc ttatgttttt aacgctgaac
    22321 aaatcgaaaa tatgccaaaa ctagaaccaa agcaagaaat tgataatttt caaataatta
    22381 aagaggcaca aaaaatttta gacgattcaa aagcgattat tcatcatcaa ggaaatagag
    22441 ctttttataa tgctacaaat gatactatta cactgccacc aaaagaaaat tttttaaatg
    22501 aaagtgctta ttacgcaact gctttacatg aattaggaca ttggagcggt cattcaagta
    22561 gattagatag agatttaaac aatccttttg gttctaaaga atatgccaaa gaagaattaa
    22621 gagccgaaat tgcaagtttt ctatttaatg gtaaaattgg tttagattat gatccaggac
    22681 aacatttatc atatattgat agttgggtgc aaattttaga agataaaccg aatgaaattt
    22741 ttaaagctac ctccgacgct acaaagattg ttaattttat tgaaagtctt tctttggagc
    22801 aaaaacaaaa aatagagctt gaaaactcaa atacacagaa acaagagctt acacaagata
    22861 aggagttaaa cttggtaact aaaaaaactt acctatatgt tccatttgaa gagaaagaaa
    22921 gtgctaaaaa agcaggtgca aaatgggata aggaagctaa aatgtggtat gctcctaagg
    22981 gaacagatct aaaaaatttc aatcaatggt taaatcaatc atcattaaca ccaaactata
    23041 gcaatacgca tgatgaattt aaagcttttt tagaaaaata tgaactcaac attgaaggac
    23101 aacctataat ggacggcaaa cttcatcgag ttagtgttat aggagataaa ggaagagaaa
    23161 aaagcggagc ttatgtagga tttttaaacg gacaccctgc gggatttgtg caaaattaca
    23221 aaactggtat taaagaaaat tggaaaagtg ctaattcttt tgaaaatact aaaaatcaag
    23281 aaataaactt taaaaatgca atagaacata ataaagcaat gaaagaagca agagaaaaag
    23341 aacttgcaca agcttatgaa aaaacagctt taaaacttga agaagaatat aataatgcaa
    23401 aatgggctaa ttcagaacac ccttatttaa aagaaaaagg atttgataaa aatttctatc
    23461 ttaagcaaga taaaaacggt aatttattaa ttcctttaag agatattgaa ggcaaatatt
    23521 gggctacaca aaggattttc gctaatggtg ataaaatgat aggagctaca cgcacagcag
    23581 aagaaaaaga gcaaggtata gaataccctg caaaaaagca aggcaatttt ttcttacttg
    23641 gtgcaaaaaa tttagataat gtcaatgaag tttatatttg cgaaggattt gcaacaagtg
    23701 ctagtgttta tgaagctaca aaatcaccta ctataatggg agtagatgct gggaatttag
    23761 aaattatcgt aacaagtata aaagaaaaat atcctaaaat gaatattatt attgcagggg
    23821 ataatgatat aaaaaaagaa ttaaacggca ataagaatgt aggcaaggaa acagctttag
    23881 gcatacaaaa aaaatatccc gaaataaaag ttgtattacc aaattttaca aatgaagaat
    23941 cacaaaaagg cttaagcgat tttaatgatt taatgaaaag caggggatta gaagaaatta
    24001 aaaaacaatt aaaagaacaa attgcaaagc aactaatggc tgaaaaagct actactaaag
    24061 cactggataa gaataaaggc attaataaag aaatttcaac taaaaaagat atagggattt
    24121 ctttatgaaa aaacaaacta atcaagcttt agtttatatg ttagggctta ttggaatttt
    24181 cctaacattt actattatta gccaaattgc aacgcaatat ttagcaaaat cgtttaatta
    24241 ttctcctagt ttaggagaaa cattatttta tggtttttat aatccattta aatggatttc
    24301 ttggagctat gtttattatt ctttttatcc tgattttttc aaaaaatttt ttatatcaat
    24361 gtttgcgggt attgcatttt gttttatcgt ttttattttg gtgaaactcg cctttttgcg
    24421 taaagcaaaa gcaatagaaa atcttcatgg atcggcacat tgggctactt tagaagaagt
    24481 caaagaaagt ggcgtatttg ataaagataa aggtgtgtat atcggtggtt ttgagcacaa
    24541 aaaaacactt cattatttaa gacacgatgg tcctgaacat ataatgcttt ttgcacctac
    24601 aagaagtggt aaaggtgtaa gcttactttt acctacactt ttatcttggg aagaatctgc
    24661 tcttatattc gacataaaag gcgagttatg ggctttaact gcgggttgga gacaaaaata
    24721 cgccaaaaat aaagtattaa aattagatcc tacttgttta gatgatagtg ccgtaaaatt
    24781 taatatttta gaagaaataa gattagaaac aatgcacgag attaaagaca ctcaaaatat
    24841 tgcaattaat ctcattttca aaggcgaaac tccccctact aatcctactc aaggtagcac
    24901 atcttatttt aaaagtgagg cgggaaattt cttagtttca attatacttt atgctttaca
    24961 tttaaaaaaa tatcgaggtg aaaatacccc aaatctaact gatatttata aattcatcaa
    25021 tgatccaaat caaagtatcg atgagctatt agaagaaatg gttgaatgcg atatttccac
    25081 gatggataaa aacacccaag aaattataca aagcatatca agatcaatga aaaataaagc
    25141 cactcaagaa ttaagcggtg taataggaac agcttcggaa actttaaatc tttatattga
    25201 tcctatctta gcaaagaata cagcaaaaag cgatttcaaa atcaaagatt taatgaatca
    25261 tgataaccct gttagtcttt atttgatcat tccaccagga caaaaagata gactgcgtcc
    25321 tttttttaat ttactcatta atcaaatctt tagaacttta actgatgatt ctttaagttt
    25381 caaaaatgga gaaaatgtca aaagatacaa acataaaatg ttagtgttag ctgatgagct
    25441 aactatgttt ggaaaattag gagtgcttga agaaaatctt gcttatatgg caggatatgg
    25501 aatgaagttt tacggatcta ttcaagatat acaacaactt tattctattt atggtgaaaa
    25561 agaaacaatt atttcaaact gccacataag aatagccttt gcaccaaata aaatcgaaac
    25621 tgcaaaactc ttatctgaaa tgggcggaat tacaactatt attaaaaaat ctcttacaag
    25681 ttctggaaaa agaactgcag taatgcttgg caatgttagt gaaactatac aagaagtgca
    25741 acgcccttta attacagctg atgagtgtat gcgattgcct tcagctaaaa aagataaaga
    25801 tgataagata atcgctcctg gtgatatgtt aatttttata gcaggtcaag cacctattta
    25861 tggaaaacaa attttatact ttaaagatcc cgcattctct gcaaggtcaa aagtaatgct
    25921 ggataaacaa atcagcgata ttttatgata caaaaggaat aaaaatggca aaaatacatt
    25981 ttgttttaaa tggcaaaggt ggtataggta aaagttttat aagctctttg ctatgtcaat
    26041 attttttaga taaaggagaa agtatcgtcg ctattgatac agatcctaac aatacaactt
    26101 tactcaatgt aaaagcttta aaagctaaat tcttacaact tattgatgat gaaggaaaat
    26161 ttgatgtccg tgcctttgat aaaattgtag aattagcttt tgaaaaaaag gctaaaaact
    26221 atattattga tagcggtgca actactttta tacctttaat cgattatctt aaagaaaatg
    26281 aagttttaga ctttttaaca agcaatagtt tagaagtttt tatgcatgtt ccgattgtag
    26341 gcggacaagc aagagatgat accattttgg gattaacaca actcacacaa gcttttaatt
    26401 gctcttttgt ggtgtgggtt aatgaatatc acggatcaat tatcaaagat gatttagagt
    26461 ttgaagaaac taaagaatat caagctatca aagaaaaaat caaagctatt atttatctta
    26521 atgctttaag taaagatact ttcggcaaag atttgttaga actcacttcc aagaatttaa
    26581 cttttggtga agctatgcaa gataaaaact tttctttaat gtcgaaacaa aggcttaaaa
    26641 ttttcaaaga taaagcattt atccaaatag gaaatatatt ataataatat ctttatgata
    26701 ttattatgat atttatttaa tttaatatta atattattat gatataatta tattaattat
    26761 tataaaggag taaaaatgca aaaacaatat cccgaagtgc atagcttaga agaaagtctt
    26821 gcgatactta aaaaatataa agatgattta actaaagagc aatatgaagg tattaaatct
    26881 gttatttgcg gacacgctat tgaagatatg tttgcaaatg aaaaagatgt tatcgatatg
    26941 ataaaaattg caaaagatga agcaaatgcc gatgaaataa tcgccgaata taaaagagaa
    27001 tggggagtaa atgattgata aagttttgaa atttttagat gatggtattc ctaaaaatga
    27061 ttttgacaga caacttttag cttctaattt agtaggcgca acaaatttaa tagagttaaa
    27121 taaacgagaa agagaaatta cattaaaaaa acaattaaaa ctacaactca atcccattaa
    27181 aggcaatttc gattatcagc atttaaaaga tatacataaa gcactttttg aagatgttta
    27241 tacttgggca ggacaagata gaatgcaaat gggactaaaa gaaaaatttg caaaatatgc
    27301 acccaatgga gcaattatta attttgttcc tggaaaagag ttagataaat actctaaaat
    27361 aatttttgat gaacttgcaa aaaataacta tctaaaaaac tccaaagatc taaatcattt
    27421 tgcaaaaaat ttagcaaaat ttatgggcga aatcaatgct ttacaccctt ttagagaagg
    27481 taacggcaga actcaaagaa tatttttaaa cgagttggct aaaaatgcag gttataaact
    27541 tgatttaaat ttaatttcta agcataaaat gatacatgct tgtgcagaag cttcacaatt
    27601 aaaacctgga agattggagg ctttaattaa agacaatcta aaaaacttta gacaaaattt
    27661 agatttggag caaaataaag gaatatcatt ataatgctat gagaaaaact attgcaatat
    27721 ttgccttttc ctttgtattt cttctaatcc tctcatatct tattttttat tttggtggct
    27781 ttcattttaa ccatacaaga tcaatgcctt tgggcttata taaagaaatt agctcttcca
    27841 tttttaacaa aaacgatatt gtgcttttaa aaataccaca aaagaaagaa attttattaa
    27901 aaaagattgt tgcaataaat ggagattttg tagaagttaa tagacaaggc gtgtttatta
    27961 ataaaacact tatgcctgat tctaaaattt tttcatttga tagcgaaggt aatccactag
    28021 aatttaaacc ttttaaatgc aagttaaaag aaaatgaact ttttgttatg ggtgaaaata
    28081 taaaaagtta tgatagtaga tattttggag taataaatat acttcaaaat gaagtaaaaa
    28141 aagttaagtc aataatatta ttttaatatc ataataata
//
LOCUS       DAZBIH010000011        27633 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.011, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000011 DAZBIH010000000
VERSION     DAZBIH010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 27633)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 27633)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..27633
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.011"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..743)
                     /locus_tag="ACHFOB_000390"
     CDS             complement(<1..743)
                     /locus_tag="ACHFOB_000390"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFN5799224.1"
                     /translation="MRINKFISHNTRYSRREADELIKQGLVKINNKIALLSDEVKFDD
                     KVFVKGKRVQKRTQFSVIIYHKQKGEIVSKKDDRGRKTIYDTLPRQFSTWLSVGRLDY
                     ASEGLLLLTDSPVIANALMHSDLEREYYLKVKGTVSKQVIEAMQNGLEIKNEKKGAHA
                     KTKITSMSFAPFIDFEIFGSSGGYTKLRVVINEGKNRELRRFFGHFDLEVMDLKRVAF
                     GALDLGMLKAGKHRYLENGEYEKLRDFLK"
     gene            complement(778..2772)
                     /locus_tag="ACHFOB_000391"
     CDS             complement(778..2772)
                     /locus_tag="ACHFOB_000391"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HFN5799225.1"
                     /translation="MNMDENKEINKNEQNPNSNSKNNKRYKYKNRRKKLADSLQNEND
                     TPKIDQNSNKENSENSENKTEKKKKKNRNLPSKLTGNEDWQIALAECIEANRVSHENR
                     LHPLKYNNSSEHKIRITPLGGLGEIGGNISVFETNKDAIIVDIGMSFPDGTMHGVDII
                     IPDFDYVRKIKDKIRGIVITHAHEDHIGAVPYFFKEFQFPIYATPLALGMISNKFEEH
                     GLKAERKWFRPVEKRRVYEIGEFDIEWIHITHSIIDASALAIKTKAGTIIHTGDFKID
                     QTPIDGYPTDLGRLAHYGEEGVLCLLSDSTNSYKEGYTKSESSVGPTFDQIFARTKGR
                     VIMSTFSSNIHRVYQAITYGLKYGRKVCVIGRSMERNLYTTMELGYIKLDRKIFIDAD
                     EVSKYKDNEVLIVTTGSQGETMSALYRMATDEHKFIKIKPTDQVIISAKAIPGNEASV
                     SAVLDYLLKAGAKVAYQEFSEIHVSGHASIEEQKLMLTLTKPKFFLPVHGEYNHITKH
                     KETAMKCGIPERNIYLMSDGDQVELCQKYVKRIKTVKTGKVFVDNQINKQIADDVVID
                     RQKLADSGIVVIIAQIDKATKTLINKPRVFSYGLVADKHDHAFSKDMAEVLGQFFINV
                     KDEVLNDPRFLENQIRQVLRKHIFRKIKKYPTIVPTIFVM"
     gene            complement(2741..3541)
                     /gene="rsmA"
                     /locus_tag="ACHFOB_000392"
     CDS             complement(2741..3541)
                     /gene="rsmA"
                     /locus_tag="ACHFOB_000392"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HFN5799226.1"
                     /translation="MVKAKKQYGQNFLIDKSVLAKIIQAIPKEMNNIIEIGPGLGDLT
                     QELLKISQVKAYEIDNDLIPILKKKFQKELECGKFNLIHQDASEAFNPSLDEKPYFLV
                     ANLPYYVASHIILKALEDKNCLGLIVMVQKEMAEKFCAKEGNSEFSSLGVLSAMICER
                     KILFDVDPQCFNPPPKVISAVMSLIKTKDFNELCEIENFKNFLKDCFKAPRKQLLGNL
                     KTYKAKVLEVLSTLGLKENIRPHEICVDSYLKIYDKLKDKYGRKQRDK"
     gene            3621..4157
                     /locus_tag="ACHFOB_000393"
     CDS             3621..4157
                     /locus_tag="ACHFOB_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HFN5799227.1"
                     /translation="MIVCAGGNENFSFAKAIGIGLVESAFHLGQLCFKEKPSKLIFIG
                     TCGLYDKGEILEIYRSSYAFNVEFSKISHAFYTPAKYEICLEKENVSRETIKINSSNY
                     ICQNSKAAKEFSKLGFFAENMEAFSVLSVAKNLNIDAECILCATNFCNENAHEDFIKN
                     HQKAKEKLEEYLKKYHYI"
     gene            4180..5250
                     /gene="rlmN"
                     /locus_tag="ACHFOB_000394"
     CDS             4180..5250
                     /gene="rlmN"
                     /locus_tag="ACHFOB_000394"
                     /EC_number="2.1.1.192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_function: GO:0016433 - rRNA (adenine) methyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA];
                     GO_process: GO:0070475 - rRNA base methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HFN5799228.1"
                     /translation="MKELVNILDFLPEELGEKIKPMFRVKQIYQWIYQKYANNFSDMS
                     SLPKDLRLELAQNFHFSPVKCVKNEQSKDGSIKYLFELIDGLRVESVLLPMKKEKINT
                     EGKRISHARYTICVSSQVGCKSGCSFCLTAKGGLKRNLSTGEIVGQILWIKKQNNIPY
                     ERRVNIVYMGMGEPLDNLKNVSKAVKILAQNDGLAISPRRQTISTSGLAKQIKELGQM
                     NLGVLLAISLHAVNDELRTELMPINKAYNIAAIMDAVREFPIDQRKRVMFEYLLIDGI
                     NDKLEHAKELVKLLNGIKAKVNLILFNPHEGSLYKRPSLENAIKFQDLLSNKGVTCTI
                     RESKGLDISAACGQLKERAKEQ"
     gene            5247..5345
                     /locus_tag="ACHFOB_000395"
     CDS             5247..5345
                     /locus_tag="ACHFOB_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799229.1"
                     /translation="MTMLDIFEIVFITAVVIIGFGGIVFVVTKEKK"
     gene            complement(5359..5435)
                     /locus_tag="ACHFOB_000396"
     tRNA            complement(5359..5435)
                     /locus_tag="ACHFOB_000396"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5399..5401),aa:Met,seq:cat)
     gene            5571..5658
                     /locus_tag="ACHFOB_000397"
     tRNA            5571..5658
                     /locus_tag="ACHFOB_000397"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5605..5607,aa:Ser,seq:gga)
     gene            6115..6726
                     /locus_tag="ACHFOB_000398"
     CDS             6115..6726
                     /locus_tag="ACHFOB_000398"
                     /inference="COORDINATES: protein motif:HMM:NF017497.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase family 90"
                     /protein_id="HFN5799230.1"
                     /translation="MENNINNILLKLDKNRHFCFLKDNINYENKKDIAIFRGAVYQKH
                     RKEFFDSYFGRTFCDIGDTSKQPSQWKKNFLNKKEQMKYKFIISLEGNDVASNLKWAM
                     NSNSLVLAPKITCETWFMEGTLKQNYHFALIDNENLSAVIEYFKSRPKDALEIINNAH
                     QYIKKFLDKKKEFHIGILVLTKYFYYSRQLELNKKRDILELIK"
     gene            6865..6940
                     /locus_tag="ACHFOB_000399"
     tRNA            6865..6940
                     /locus_tag="ACHFOB_000399"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6898..6900,aa:Ala,seq:ggc)
     gene            6944..7019
                     /locus_tag="ACHFOB_000400"
     tRNA            6944..7019
                     /locus_tag="ACHFOB_000400"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6977..6979,aa:Val,seq:gac)
     gene            7047..7577
                     /locus_tag="ACHFOB_000401"
     CDS             7047..7577
                     /locus_tag="ACHFOB_000401"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN5799231.1"
                     /translation="MQNTIIQKAIHKDLNSILEITKDALNAMKTMNFHQWDENYPNEI
                     VFQEDIQAQELYVFKENDEILGFICINEKFEPEFYKQVIFNKNYDDKAFYLHRLAVKQ
                     NAKGKGVAQKLLNFCENFALENHKASLRADTHSKNFPMNSLFKKLDFNFCGNFDIPNY
                     QDPFLAYEKILNQKAF"
     gene            complement(7557..8159)
                     /gene="leuD"
                     /locus_tag="ACHFOB_000402"
     CDS             complement(7557..8159)
                     /gene="leuD"
                     /locus_tag="ACHFOB_000402"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HFN5799232.1"
                     /translation="MQKFIIHKGIACPLEYANIDTDQIIPKQFLLAVSKQGFGKHLFH
                     DLRYLDDKESVLNMDFNLNKKEYQNSSILVSFENFGSGSSREHAPWALVDYGIRAIIA
                     PSFADIFKNNALGNGLLTIELAKDEVLGIVDELKKSQDKNIEISLLEKRVFFKDKIFS
                     FDLDDFHRICLLEGLDNIALTLKHEAQIKAYEKNSKSFLV"
     gene            complement(8161..9573)
                     /gene="leuC"
                     /locus_tag="ACHFOB_000403"
     CDS             complement(8161..9573)
                     /gene="leuC"
                     /locus_tag="ACHFOB_000403"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HFN5799233.1"
                     /translation="MTMAKTLYEKVFDAHVVYEGKNELPILYIDRHLIHEVTSPQAFS
                     GLKMAKRRMARADLTLATIDHDVSTKSVDLNACSDMAKEQITTLMQNTKEFGVRLLGL
                     GDKNQGIVHIVSPELGFTLPGVTLVCGDSHTATHGAFGALAFGIGTSEVEHVMATQTL
                     KQAKLKTMKIECKGQFQKGVYAKDLILYLIAQYGTAKGTGYAIEFCGELIRNLSMEAR
                     MTLCNMAIEFGAKVGMIAPDEITFEYIKGKEFAPKGEEFQKYCEYWKSLRSDEGAKYD
                     ESITLDVSKIKPQISYGTNPSQVIGIDEKIPKISDFKNQSEQKSLLDALSYVNLEQDQ
                     VIEGVKIDIVFIGSCTNGRLEDLKIAADILKGRKIHKNVKALIVPGSMQVRKEAENLG
                     LDKIFIEAGCEWRYAGCSMCLGMNDDKANSGQRVASTSNRNFVGRQGKGSITHLMSPA
                     SAAACAIEGVICDNRKYLGV"
     gene            complement(9560..10636)
                     /gene="leuB"
                     /locus_tag="ACHFOB_000404"
     CDS             complement(9560..10636)
                     /gene="leuB"
                     /locus_tag="ACHFOB_000404"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003862 - 3-isopropylmalate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - L-leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HFN5799234.1"
                     /translation="MKTYKVAVLAGDGIGPLVMKEALKILTFIAQKYNFSFEFNEAKI
                     GGASIDAYGVALSDETLKLCEQSDAILFGSVGGPKWDNLPIDQRPERASLLPLRKHFN
                     LFANLRPCKIYESLTHASPLKNEIIQKGVDILCVRELTGGIYFGKQDLGKESAYDTEI
                     YTKKEIERIAHIAFESARIRKKKVHLIDKANVLASSILWREVVANVAKDYKDISLEYM
                     YVDNAAMQIVKNPSIFDVMLCSNLFGDILSDELAAINGSLGLLSSASLNDKGFGLYEP
                     AGGSAPDIAHLNIANPIAQILSAALMLKYSFKEEQAAQDIENAISLALAQGKMTKDLN
                     AKSYLNTDEMGDCILEILKENDNG"
     gene            complement(10633..12168)
                     /gene="leuA"
                     /locus_tag="ACHFOB_000405"
     CDS             complement(10633..12168)
                     /gene="leuA"
                     /locus_tag="ACHFOB_000405"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003852 - 2-isopropylmalate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0019752 - carboxylic acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HFN5799235.1"
                     /translation="MKDNKIIIFDTTLRDGEQALGSSLGINQKLQIALALENLGVDVI
                     EAGFPVSSQGDFKAVQKIASKVKNSTICALSRALDKDIDMAYEALKVAKHFRIHTFIA
                     TSTLHMQDKLKKDFDEILSMAKRAIIRARSYTDDVEFSCEDAGRTPIDNLCFMVENAI
                     KAGAKTINIPDTVGYTLPSEFANIIKILFNKVPNIDKAIISVHCHNDLGVATGNSLSA
                     ILQGARQIECTINGLGERAGNCALEEVVMAIKTRKDYLKGFYTDIKCENIFKTSKLVS
                     AITNESIPSHKAIVGSNAFSHSSGIHQDGVLKNRQTYEIISPSAIGIHENRMLMTARS
                     GRAMIKTCLENLGYDENTYNLDDVYERFLRLADKKGQVYDYDLEALMFLSYENEEENE
                     FVIEKLSVISGNIPTACVCMRIKEELKTEACTGNGPVEAVFNCIARITNLKPALKAYS
                     INAKSSGVDAQGQVDVDLEFKGRKFHGKGISTDVIEASAQAFVSAYNAIYRSLKVEER
                     KMA"
     gene            12488..13117
                     /locus_tag="ACHFOB_000406"
     CDS             12488..13117
                     /locus_tag="ACHFOB_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799236.1"
                     /translation="MLKELLEIKKEMEPVIHEANVKLNVLAREVIVRKKEYEIYGPMV
                     DRVYLDNAIYVKVMSSGRDVKTDNVTIKNGFYMVFVAPEKESTKDIKNKLKVAYEGLD
                     NKFIATLIRSCQRFKEIINKTQATLAKASKMNVVVKTNLGEASAALKFNITIEYTKEN
                     QKLTRENSKSAGSFRDTKTYINLVVEKNTDSQICEKLLDDVEKYFIGGG"
     gene            complement(13153..13797)
                     /locus_tag="ACHFOB_000407"
     CDS             complement(13153..13797)
                     /locus_tag="ACHFOB_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002890434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane beta-barrel protein"
                     /protein_id="HFN5799237.1"
                     /translation="MNKKLLSIIASATLFSNLALADENSGFFIGADAAWMHAQVKSEL
                     KHKNTKQNFNGDISGNIPSFGLKLGYRLNENHRIYAGYNYSDEFSDFIKTPKIQIEGD
                     FATHKFLTGYDFTPKLFEKTRAVLGVYGGYARTDLTLKTSFLSLSQNFDGYFYGAKIG
                     ALYDLTPHNEIELGFKAEQIHYNSRNFYQNKVGSNFYDPKQTNYGVYLGYNYKF"
     gene            complement(13935..14318)
                     /gene="queF"
                     /locus_tag="ACHFOB_000408"
     CDS             complement(13935..14318)
                     /gene="queF"
                     /locus_tag="ACHFOB_000408"
                     /EC_number="1.7.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0033739 - preQ1 synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046857 - oxidoreductase activity, acting
                     on other nitrogenous compounds as donors, with NAD or NADP
                     as acceptor [Evidence IEA];
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preQ(1) synthase"
                     /protein_id="HFN5799238.1"
                     /translation="MRYGEKEIKEFDVENMEIWPNDAKNDYIIKITLPEFMCCCPRSG
                     YPDFATIYLEYMPDKFVVELKAIKLYINTFMYRNVSHEASINEIYNTLKDKLKPKWIK
                     VVGDFNPRGNVHTVIECRSDMVVPK"
     gene            14478..15077
                     /locus_tag="ACHFOB_000409"
     CDS             14478..15077
                     /locus_tag="ACHFOB_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HFN5799239.1"
                     /translation="MRKSIAIIGGSIAGLSAALFFASAKNKELDFDITVFDEGKADLK
                     AAAIYNVPFFPKGAKADEIYTHIKAQIASMLEVKYIDSKVVSISGEKGDFTVNDEQGL
                     GIKADYIIVATGANKSDIKELEDFVIPHELMPKPNKFCFKHHGRQIIKEGIYAAGLAS
                     GVTTMVACAMGSANEAACAILSDIKGAVSVYHDTPTTRV"
     gene            complement(15082..15963)
                     /gene="metA"
                     /locus_tag="ACHFOB_000410"
     CDS             complement(15082..15963)
                     /gene="metA"
                     /locus_tag="ACHFOB_000410"
                     /EC_number="2.3.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008899 - homoserine O-succinyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019281 - L-methionine biosynthetic process
                     from homoserine via O-succinyl-L-homoserine and
                     cystathionine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-succinyltransferase"
                     /protein_id="HFN5799240.1"
                     /translation="MPLIIPENIPAYELLKEHAFIMGLRRAKHQDIRPQEILIVNLMP
                     KKIETENQILSLLANSPLQVNITLLATTSYVGKNTPFTHLEKFYKGLEEVKKHKFDGA
                     IVTGAPVEQMDFEKVAYWEELLEIFDFLKQNVTSSMYICWGAMAALKYFYGVDKISLD
                     KKIFGVYKHDKVSPDLLLTNLDEKVLMPHSRHSSMDEEQILALQKQGKLKILLRNKKI
                     GSALLRDEKNIFILGHLEYFKETLHQEYVRDNFIQKAKNYYDKKGNIKYNWRSNANTI
                     FANWLNYDVYQSTPFVL"
     gene            complement(16046..17317)
                     /gene="metB"
                     /locus_tag="ACHFOB_000411"
     CDS             complement(16046..17317)
                     /gene="metB"
                     /locus_tag="ACHFOB_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HFN5799241.1"
                     /translation="MNFNKETLALHGAYNFDTQRSISVPIYQNTAYNFENLDQAAARF
                     NLQELGNIYSRLSNPTSDVLGQRLANIEGGAFGIPVTSGMAACFYALINLASSGDNVA
                     YSNKIYGGTQTLISHTLKNFGIEAREFDIDDLDSLEKVIDQNTKAIFFESLSNPQIAI
                     ADIEKISQIAKKHKIVSICDNTVATPFLLQPFKHGVDVIVHSLSKYVSGQGTALGGAL
                     IERKDLNDLLKNNDRYKAFNTPDPSYHGLNLNTLDLPIFSIRVIITWLRDLGASLAPQ
                     NAWLLLQGLETLAVRIEKHSQNAEKVANFLNSHPDIKGVNYPTLASNAYHNLFKKYFD
                     KNFASGLLSFEAKDYEHARRICDKTQLFLLAANLGDSKSLIIHPASTTHSQLSEEELQ
                     KAGITKATIRLSIGLENSDDLIADLKQAIES"
     gene            complement(17743..20319)
                     /gene="flgE"
                     /locus_tag="ACHFOB_000412"
     CDS             complement(17743..20319)
                     /gene="flgE"
                     /locus_tag="ACHFOB_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HFN5799242.1"
                     /translation="MMRSLWSGVSGLQAHQVAMDVEGNNISNVNTTGFKYSRADFGTM
                     FSQTVKIATAPTDGRGGSNPLQIGLGVSVSSTTRIHSQGSVQTTDKNTDVAINGDGFF
                     MVSDDGGLTNYLTRSGDFKLDAYGNFVNNAGFVVQGWNINWDTQSIDSSRTPQNIFID
                     PGMHIPAAQSTEVAIKANLNSGLNIGTASRPLYSLDSVHGFNQKTGETKDENDTGTTQ
                     FYTTSKNAVEVTEKGVDAGSLFNANGTGLNLRDGQGIWVSYADAKYSTNQLGVNAFDP
                     NLHQNQTAAFWGNGNQKTRLDIVINGVAIQNDTIGSIDEAIAYINTFTAPTDAREGTG
                     VRAVKNADGSGIDFVNDNADGTTDNMKNINLVVNATNTAGEAWTATWDAATNTFNQYT
                     SIPQNNASLWTATGGQAGTPNNLTGGRSAQIITAHKYIYSSSPQTLPPMYNPDGGFNY
                     IPGTPGNPPANPPTWNGTDAATIGSQNYYNAVMNGSLLNTNIRTFHTTEDLRELLQRD
                     ARYGVDYDGNGTFAAADVNENVKVVVNSSGAFSLTNVNETSNSPILVTGGAPLNFGSH
                     NMNFNITAYTDERGTVSTNDAFTKIFKGLDGSFPAGNQVKQSELLKLSAFSAGLEIYD
                     SLGSKHTLEVQFVKQSTTQDGGNEWQMIIRVPEPAEINTTGEGPNNIIVGTARFNNDG
                     SLSNYNPRTINFSPNNGAAPNQQIKLSFGTSGSNDGLVSSNSASTLTGQATDGYTSGN
                     LKPDAIRVDDKGNILGEFTNGKTFAVAKIAMASVANNSGLEEIGGNLFKVTANSGNIV
                     VGEAGTGGRGEMKTSALEMSNVDLSRSLTELIIIQRGYQANSKTISTSDQMLQTLIQL
                     KQ"
     gene            complement(20512..20994)
                     /gene="ruvC"
                     /locus_tag="ACHFOB_000413"
     CDS             complement(20512..20994)
                     /gene="ruvC"
                     /locus_tag="ACHFOB_000413"
                     /EC_number="3.1.21.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008821 - crossover junction DNA
                     endonuclease activity [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="crossover junction endodeoxyribonuclease RuvC"
                     /protein_id="HFN5799243.1"
                     /translation="MNLKILGIDPGSRNCGYAIIEANKGKNILIEAGLIKIKPSTLQY
                     QITELCEGLDLIFKNHSFDEVAIEDIFFAYNPKTVLKLAQFRGALSLKILQIHGDFAE
                     YTPLQVKKAVTGKAKATKEQVAFMVKRLLGLSKDIKPLDITDAIAVALTHAANLRVRV
                     "
     gene            21090..22412
                     /gene="dnaA"
                     /locus_tag="ACHFOB_000414"
     CDS             21090..22412
                     /gene="dnaA"
                     /locus_tag="ACHFOB_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003688 - DNA replication origin binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006270 - DNA replication initiation
                     [Evidence IEA];
                     GO_process: GO:0006275 - regulation of DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HFN5799244.1"
                     /translation="MNPSQILENLKKELNENEYENYLSNLKFNEKQSKADLLVFNAPN
                     ELMAKFIQTKYGKKIAHFYEVQSGNKAIINIQAQSAKQSNKSTKIDIAHIKAQSTILN
                     PSFTFDSFVVGDSNKYAYGACKAITHKDKLGKLYNPIFVYGPTGLGKTHLLQAVGNAS
                     LEMGKKVIYATSENFINDFTSNLKNGSLDKFHEKYRNCDVLLIDDVQFLGKTDKIQEE
                     FFFIFNEIKNNDGQIIMTSDNPPNMLKGITERLKSRFAHGIIADITPPQLDTKIAIIR
                     KKCEFNDINLSNDIINYIATSLGDNIREIEGIIISLNAYATILGQEITLELAKSVMKD
                     HIKEKKENITIDDILSLVCKEFNIKPSDVKSNKKTQNIVTARRIVIYLARALTALTMP
                     QLANYFEMKDHTAISHNVKKITEMIENDGSLKAKIEELKNKILVKSQS"
     gene            22572..23639
                     /gene="dnaN"
                     /locus_tag="ACHFOB_000415"
     CDS             22572..23639
                     /gene="dnaN"
                     /locus_tag="ACHFOB_000415"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HFN5799245.1"
                     /translation="MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLI
                     RASDYEIGINYKIKKIRVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLFIRQKS
                     TKYKLPMFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLD
                     IKTDKINFVGTDTKRLAIYTLEKANNQEFSFSIPKKAIMEMQKLFYEKIEIFYDQNML
                     IAKNENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEKMKLHF
                     NKDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNE
                     PNSAFIVKSQGLSMIIMPMIL"
     gene            23668..25977
                     /gene="gyrB"
                     /locus_tag="ACHFOB_000416"
     CDS             23668..25977
                     /gene="gyrB"
                     /locus_tag="ACHFOB_000416"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005694 - chromosome [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HFN5799246.1"
                     /translation="MQENYGASNIKVLKGLEAVRKRPGMYIGDTNIGGLHHMIYEVVD
                     NSIDEAMAGHCDTIDVEITTKGSCIVSDNGRGIPVDMHPTENMPTLTVVLTVLHAGGK
                     FDKDTYKVSGGLHGVGVSVVNALSKKLVATVERNGEIYRQEFSEGKVISEFGVIGKSK
                     KTGTTIEFWPDDQIFEVTEFDYEILAKRFRELAYLNPKITINFKDNRVGKHESFHFEG
                     GISQFVIDLNKKEALTKAIFFSVDEEDVNVEVALLYNDTYSENLLSFVNNIKTPDGGT
                     HEAGFRMGLTRVISNYIEANASAREKDNKITGEDVREGLIAVVSVKVPEPQFEGQTKG
                     KLGSTYVRPIVSKASFEYLTKYFEENPIEAKAIMNKALMAARGREAAKKARELTRKKE
                     SLSVGTLPGKLADCQSKDPSESEIYLVEGDSAGGSAKQGRERSFQAILPLRGKILNVE
                     KARLDKILKSEQIQNMITAFGCGIGEDFDLSKLRYHKIIIMTDADVDGSHIQTLLLTF
                     FFRFMNELVANGHIYLAQPPLYLYKKAKKQIYLKDEKALSEYLIETGIEGLNYEGIGM
                     NDLKDYLKIVAAYRAILKDLEKRFNVISVIRYMIENSNLVKGNNEELFSVIKQFLETQ
                     GHNILNHYINENEIRAFVQTQNGLEELVINEELFTHPLYEEANYIFDKIKDRGLEFDK
                     DILEVLEDVETNAKKGATIQRYKGLGEMNPEQLWETTMDPSVRRLLKITIEDAQSAND
                     TFNLFMGDEVEPRRDYIQAHAKDVKHLDV"
     gene            complement(26003..26344)
                     /locus_tag="ACHFOB_000417"
     CDS             complement(26003..26344)
                     /locus_tag="ACHFOB_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="monoheme cytochrome C"
                     /protein_id="HFN5799247.1"
                     /translation="MKKIILILALFLSASWAQNLEINPDTGLIIDPDSPLVEANCLAC
                     HGSNLITNMHASKKAWLAAIRWMQDSEGLWEIEPEDEEKILNYLEKYYGEKYDTRRRI
                     PLAIFLQNKTH"
     gene            complement(26347..27585)
                     /locus_tag="ACHFOB_000418"
     CDS             complement(26347..27585)
                     /locus_tag="ACHFOB_000418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase"
                     /protein_id="HFN5799248.1"
                     /translation="MKQNDQKENRRDFLKNIGLGLFGISVLSNFSFENFLGSKALAKE
                     LPDFKIEGKKDLIYHGEKPLTAETEIYALDSDFTKPENFFVRNNGLPPSLETIKERLH
                     KGWTLEIDGESIINKKSYTIEDLKKKFKTYTYALTVECGGNGRSEVIPSTKGTQWGYG
                     AVACGRWTGVRLKDILKDCGIKNDAVYIGYYGIDTKLNGEETSPISRGVPISKALQDE
                     TLIAWAYEGKDIPLVNGYPLRLVCGGYPASTSGKWLYKISVRNKIHDGEKMEGSYKVP
                     VNPVKPGDFNYKGEMKIIESMPIRSVITNIKNGSEIKANKKFEVRGKAWAGELEVSEV
                     YVSNDYGVTWTKAKVEKPLNRLAWQKWSAQISIPTKGYYEIWARAIDSQGNSQPMVLA
                     QWNPGGYINNACHRVNVYGV"
BASE COUNT         9419 a         4669 c         4135 g         9410 t
ORIGIN      
        1 aatttcaaaa aatctcttaa tttttcatat tctccatttt ccaaatagcg atgttttccc
       61 gcctttaaca taccaagatc taaagcccca aaagcaacac gcttaagatc catgacttca
      121 agatcaaaat gtccaaaaaa gcgtctaagc tctctatttt taccttcatt tataaccact
      181 ctaagcttag tataacctcc acttgatcca aaaatttcaa agtctataaa aggagcaaaa
      241 ctcatagagg tgattttggt ttttgcgtgt gcgccttttt tttcattttt aatctcaagc
      301 ccattttgca tggcttcgat gacttgtttg ctcaccgtac ctttaacttt aaggtagtat
      361 tctctttcta aatcgctatg cattaaagca ttagcaatca caggagaatc tgtaagcaaa
      421 agcaagccct cgcttgcata atccagccta cctacgctaa gccaagtact aaattgtctt
      481 ggcaaggtat cgtatatagt ttttcttcca cgatcgtctt ttttactgac aatttcacct
      541 ttttgtttat ggtagattat cacgctaaat tgcgttcttt tttgcactct tttgccctta
      601 acaaagactt tatcatcaaa tttaacttca tcgcttaaaa gggcaatttt gttgtttatt
      661 tttactaagc cttgtttgat aagttcatca gcttcacggc gtgaataacg agtgttatgg
      721 gatataaatt tattaattct catttgatct tccttaaaag ggcgtttttg ccctttttta
      781 cattacaaaa atagttggaa ctatggttgg gtatttttta atctttctaa agatatgttt
      841 tcttaagact tggcggattt gattttctaa aaatcttgga tcattgagta cttcatcttt
      901 aacattgatg aaaaattgtc ctaaaacttc agccatatct ttgctaaaag catgatcgtg
      961 tttgtcagct actaacccat agctaaatac tcttggttta ttgatcagtg tttttgtggc
     1021 tttgtcaatt tgtgcgataa taaccactat gccactatct gcaagttttt ggcgatctat
     1081 aactacatca tcggcgattt gtttgttgat ttgattatct acaaaaactt tacctgtttt
     1141 tacggttttt atgcgtttga catatttttg gcaaagttct acttgatcgc catcactcat
     1201 aagataaata tttctttcag ggataccgca cttcatcgct gtttctttgt gtttagtgat
     1261 gtgattgtat tctccatgaa ccggtaagaa aaatttaggt ttggtaaggg ttagcataag
     1321 tttttgctct tctatactag cgtgtccgct tacatgaatt tcactaaatt cttgatacgc
     1381 tactttagct cctgctttta aaagatagtc aagcaccgca gaaacacttg cttcatttcc
     1441 tggtatggct ttagctgaaa taatcacttg atctgtaggt ttgattttta taaatttatg
     1501 ctcatcagtt gccattctat aaagcgcact catggtttcg ccttgacttc ctgtagttac
     1561 gataagcact tcattgtctt tatatttgct tacttcatca gcatcgatga aaatttttct
     1621 atcaagtttg atgtagccta attccatagt ggtataaaga tttctttcca tagaacgacc
     1681 gatcacacaa acttttctgc cgtattttaa accataagtg atagcctgat aaacacggtg
     1741 gatattagaa ctaaaagtac tcatgatcac cctgcctttg gtacgtgcaa aaatttgatc
     1801 aaaagttggc cctacagagc tttcactttt tgtataacct tctttgtacg aatttgtact
     1861 atcgcttaaa agacataaaa ccccttcttc tccataatgt gccaaacgtc ctaagtctgt
     1921 tggatagcca tcgattgggg tttgatcaat tttaaaatca cctgtgtgga taatagttcc
     1981 tgcttttgtt ttgatcgcaa gtgctgaagc atcaatgata gaatgtgtga tatgaatcca
     2041 ctctatatca aattcgccta tctcataaac acggcgtttt tctacagggc gaaaccattt
     2101 gcgttctgct tttaagccat gttcttcaaa tttgtttgaa atcattccta aagccaaagg
     2161 tgtagcgtag ataggaaatt ggaattcttt aaagaaataa ggcactgcac cgatatgatc
     2221 ttcgtgtgca tgagtgatca ctataccacg aattttatct ttaatttttc ttacatagtc
     2281 aaaatcaggg atgataatat ctaccccatg catagttcca tcaggaaaac tcatacctat
     2341 atctactata attgcgtctt tattggtttc aaaaacactg atatttccac caatttctcc
     2401 taaacctcct aaaggagtga tgcggatttt atgctcgcta gaattattat attttaaagg
     2461 gtgtaagcgg ttttcatgtg aaacacgatt agcttctata cattctgcaa gagcgatttg
     2521 ccaatcttca ttacctgtga gttttgaagg aagattgcga tttttcttct tttttttctc
     2581 agttttattt tctgagtttt cagaattttc cttgttggaa ttttgatcaa tttttggagt
     2641 atcattttca ttttgcaaag aatcagctaa tttttttcta cgatttttat atttatagcg
     2701 tttattgttt tttgaatttg agttcggatt ttgttcgttt ttatttatct ctttgttttc
     2761 gtccatattt atcctttaat ttgtcataaa ttttaaggta tgaatcaacg caaatttcat
     2821 gtggtctgat gttttctttt aagccaaggg tgcttaaaac ttctaaaact tttgctttat
     2881 atgtttttaa atttcctaag agttgttttc taggagcttt aaaacagtct tttagaaaat
     2941 ttttgaaatt ttctatttcg caaagttcat taaaatcctt agttttaatc aaactcatta
     3001 ccgctgatat aacttttggc ggcggattaa aacattgtgg atcaacatca aaaagtattt
     3061 ttctttcgca aatcattgca cttaaaacac ctaaggaaga aaactcacta tttccttctt
     3121 tagcgcagaa tttttcagcc atttcttttt gcaccattac aataagccct agacaatttt
     3181 tatcttctaa agcttttaat ataatgtgac ttgcaacata ataaggcaaa tttgcaacca
     3241 aaaaatatgg tttttcatca agactaggat taaaagcttc gcttgcgtct tgatggatca
     3301 agttaaattt tccacattca agttcttttt gaaatttctt ttttaaaata ggtataagat
     3361 cattatcgat ttcataagct tttacttgag aaatttttaa aagttcttgc gttaaatcac
     3421 ctaagccagg cccaatctca atgatattgt tcatctcttt gggtatggct tggatgattt
     3481 ttgctaatac gcttttatcg attaaaaaat tttgtccgta ttgttttttt gctttaacca
     3541 taagaaataa ttttatctaa aaattcttaa ttaagtcttt ttaggtagaa ttatttttgt
     3601 aaaatttcat aaggatcaaa atgattgttt gtgcgggtgg aaatgaaaat ttttcttttg
     3661 caaaagctat aggtataggt ttggttgaat cagcttttca tttgggtcaa ctttgcttca
     3721 aagaaaaacc atcaaaactt atatttatag gaacttgtgg gctttatgat aaaggagaaa
     3781 ttttagaaat ttatagaagt tcatatgctt ttaatgtaga attttctaaa atttcacacg
     3841 ctttttatac tcctgcaaaa tatgaaattt gtttagaaaa agaaaatgtt tctcgtgaaa
     3901 caatcaagat caattcttca aattatattt gtcaaaattc aaaagcagca aaagaatttt
     3961 cgaaattagg tttttttgca gaaaatatgg aagccttttc tgttttgagc gtagctaaaa
     4021 atttaaatat tgatgcagag tgtattttgt gtgcaacaaa tttttgcaat gaaaatgctc
     4081 acgaagattt tataaaaaat catcaaaagg caaaagaaaa attagaagaa tacttaaaaa
     4141 aatatcatta tatttaaaaa ttcaaaaagg aaaataattt tgaaagagct tgttaatatt
     4201 ttagattttt tacctgaaga attaggagaa aaaatcaaac cgatgtttcg cgtgaaacaa
     4261 atttatcaat ggatttatca aaaatacgcc aataattttt ctgatatgtc aagtttacca
     4321 aaagatctac gtttagaact tgcgcaaaat tttcatttct ctcctgtaaa atgtgttaaa
     4381 aatgagcaaa gtaaagatgg aagtataaaa tatctttttg aacttatcga tggtttaagg
     4441 gtagaaagcg tgcttttacc tatgaaaaaa gaaaaaataa acacagaagg caaaagaatt
     4501 tctcatgcga gatacactat ctgtgtttct tctcaagtgg gttgtaaaag tggctgtagt
     4561 ttttgtctta ccgctaaagg tggcttgaaa agaaatttaa gcacaggaga gatagttgga
     4621 caaattttat ggatcaaaaa acaaaacaat atcccttacg aacgccgtgt aaatatagta
     4681 tatatgggta tgggcgagcc tttggataat cttaaaaatg tttctaaagc ggtaaaaatt
     4741 ttagcacaaa atgatgggct tgccataagt cctcgccgtc aaaccatcag tactagcggt
     4801 ttggcaaaac aaatcaaaga attaggtcaa atgaatttag gtgttttact tgctatatca
     4861 ttgcatgcag ttaatgatga gcttcgaacc gaacttatgc ctatcaataa agcttataat
     4921 atcgctgcga ttatggatgc ggtgcgtgaa tttcctatag atcaaagaaa aagggtaatg
     4981 tttgaatatc ttttaattga tggtatcaat gataagcttg aacacgctaa agaattagtc
     5041 aagcttttaa atggcattaa agctaaagtg aatttaatac tctttaatcc gcatgaagga
     5101 agcttatata aacgccctag tttagaaaac gcgattaaat ttcaagattt actcagcaat
     5161 aaaggtgtaa cttgtactat aagagaaagt aaagggcttg atatctcagc tgcttgtgga
     5221 cagcttaaag aaagggcaaa agaacaatga caatgctaga tatttttgaa atcgttttta
     5281 taacagctgt tgtgattata ggttttggtg gaattgtttt tgtagtaaca aaagaaaaaa
     5341 aataattatt acatttaatg gtgtcaaggg ggagacttga actcccgacc tccggcttat
     5401 gagaccagcg ctctaaccag ctgagctacc ctgactaaaa ataaaaatat aattatacta
     5461 ctttttacta aaaattttct gattttttta aaaaataatt ttattttcaa tatttaaaaa
     5521 atttctttat ttttaaagct tttatagata taatgaaagc tttatttcat agacaggtgt
     5581 ccgagcggtt gaaggagcac gcctggaacg cgtgtaaagt gcaagctttc gagggttcga
     5641 atcccttcct gtctgccatt cttattttta atatttaaaa tattattgtt ttgtcaaaag
     5701 ttattttatt gtttataaat tcttaaattt ttgataaaat attaaaaatt ttatttatta
     5761 ggttttttat aatgctacaa tcaagacttt taatgaattt aaaaggaata ggaatatctt
     5821 ttataccaag atatttttca aataaattta gataaaattt ttaatgatat tttaaaatac
     5881 aatattaaag acttagaaga aatacaaact cgagttaaat attataatca aataaatgaa
     5941 ttttttacac ctacagcaaa ggaaaaaata ggaaaatttc cttttaaaag cacctcttat
     6001 gcttttgatg cttatgaaat cagtaaatac tttaaagatg aatttttatg gaataaagaa
     6061 tttggcgatg taagacatac ttttaaagaa gcaactattt gcaaatcgag atctttggaa
     6121 aataatataa ataatatttt attaaaactt gataaaaata ggcacttttg ctttttaaaa
     6181 gataacataa actatgaaaa taaaaaggat atagcgatat ttagaggagc agtatatcaa
     6241 aaacatcgaa aagaattttt tgattcttat tttggtagaa ctttttgcga tataggagat
     6301 acttcaaaac aacctagcca atggaaaaaa aactttttaa acaaaaaaga acaaatgaaa
     6361 tataaattta taatttcttt agagggtaac gatgtagcaa gcaacttaaa atgggctatg
     6421 aattctaatt ctttagtttt agctccaaaa ataacttgcg aaacttggtt tatggaagga
     6481 actttaaaac aaaattatca ctttgctttg attgataatg agaatttgtc agcagtaatt
     6541 gaatatttta aaagtcgccc aaaagatgca ttggaaatta ttaataatgc tcatcaatat
     6601 attaagaaat ttttagacaa gaaaaaagaa ttccatatag gaattttggt tttgaccaaa
     6661 tatttttatt actctagaca acttgaactt aacaaaaaaa gagatatttt agaattaatc
     6721 aaatagtaaa ttactctcat taattctcta atttttcata aaaaataaat ctttttatac
     6781 atatattaca tcataaatta aaaatttgat tttagttttc agccaaaaac aagtaatatt
     6841 gcgataaaat ctcagactta taaaggggca ttagctcagc tgggagagca caacgctggc
     6901 agcgttgtgg tcagcggttc gaacccgcta tgctccacca tatggttccg tagctcagct
     6961 ggtagagcac taccttgaca tggtagtggc cgttggttca agtccaatcg gagccaccat
     7021 cacccttcct tatacaaagg attatcatgc aaaacactat catacaaaaa gccatccata
     7081 aagatttaaa ttctatactt gaaatcacaa aagatgcttt aaatgctatg aaaactatga
     7141 attttcacca atgggatgag aattatccca atgaaatagt ttttcaagaa gatatacaag
     7201 cacaagaact ttatgtgttt aaagaaaatg atgaaatttt aggctttatc tgtatcaatg
     7261 aaaaatttga acctgaattt tacaaacaag ttatttttaa caaaaattat gatgataaag
     7321 ccttttatct acaccgttta gccgtcaaac aaaatgcaaa aggcaaaggc gtggcacaaa
     7381 aacttttaaa tttttgcgaa aattttgcct tggaaaatca caaggcaagt ttaagagcag
     7441 atactcatag taaaaatttt cctatgaatt cgctttttaa aaagcttgat tttaattttt
     7501 gtggaaactt tgacatacct aattaccaag atcctttttt agcttatgaa aaaattctaa
     7561 accaaaaagc tttttgagtt tttttcatag gctttgattt gtgcttcatg ttttaaagtt
     7621 aaagctatat tatcaagtcc ttccaaaaga caaattctgt gaaaatcatc taaatcaaaa
     7681 gaaaaaatct tatctttaaa aaatactctt ttttccaaca aagaaatttc tatattttta
     7741 tcttgggatt tttttaactc atcaactatt cccaaaacct catctttagc aagttctatg
     7801 gtaagcaaac catttcctaa ggcattgttt ttaaaaatat ccgcaaaaga aggtgcgata
     7861 atagctctaa taccataatc aaccaaagcc caaggcgcat gctctcttga agagccacta
     7921 ccaaaatttt caaaacttac caaaatagag ctattttgat attctttttt attgagatta
     7981 aaatccatat ttaaaacact ttctttatca tctaaataac gcaaatcatg aaacaaatgc
     8041 ttaccaaaac cttgcttaga cactgcaagt aaaaattgct taggtataat ttgatctgtg
     8101 tctatattgg catattctaa aggacaagct atacctttat gtataataaa tttttgcata
     8161 ttaaactcct aaatactttc tattatcaca aataacacct tctatggcac aagctgccgc
     8221 acttgcagga ctcatcaaat gagtgataga acctttacct tgtctgccta caaagttacg
     8281 atttgaagtt gaagcaactc tttgacctga atttgctttg tcatcattca taccaagaca
     8341 catagaacac cctgcatatc tccactcaca ccctgcctcg ataaaaatct tatcaagtcc
     8401 taaattttca gcttcttttc ttacttgcat tgaaccaggc acgattaaag ctttaacatt
     8461 tttatgaatt ttacgccctt ttaagatatc ggcggctatt ttaagatctt ctaaacgccc
     8521 atttgtgcaa gatcctataa atacaatgtc gatttttacc ccttctataa cttgatcttg
     8581 ctctaaattt acataagata aagcatcaag caaagatttt tgctcgcttt gatttttaaa
     8641 atcacttatt tttggaattt tttcatctat gccaatcact tgcgaaggat ttgttccata
     8701 gctaatttgt ggttttatct tgcttacatc tagagtaata ctctcatcat attttgctcc
     8761 ttcatcgctt cttaaactct tccaatactc acaatacttt tgaaattctt ctcctttagg
     8821 tgcaaattcc tttcccttaa tatactcaaa agtgatctca tcaggagcta tcatacctac
     8881 tttagctcca aattctatag ccatattaca aagagtcatt ctagcttcca tacttaaatt
     8941 tcttataagt tctccgcaaa attctatagc ataacctgtg ccttttgccg tgccgtattg
     9001 tgcgatcaaa tacaaaatca aatccttagc ataaacgcct ttttgaaact gccctttaca
     9061 ttcgattttc atagttttaa gtttggcttg ttttaaagtt tgcgttgcca tgacatgctc
     9121 tacttcactc gtgcctatac caaaggctaa agctccaaaa gccccatgtg ttgccgtatg
     9181 agaatcccca caaactaaag taaccccagg taaagtaaag ccaagctcag gacttactat
     9241 atgaactatg ccttgatttt tatctccaag tcctaaaagc cttactccaa attccttagt
     9301 attttgcatc aaagttgtaa tttgctcttt tgccatatca gaacaagcat ttaaatccac
     9361 acttttagtt gaaacatcat gatctatagt agccaaagtt aaatccgctc ttgccattct
     9421 acgcttagcc attttaagcc ctgaaaatgc ttgagggctt gttacttcat ggattaaatg
     9481 tctatcgata taaagtatag gaagttcgtt tttgccttca taaaccacat gagcatcaaa
     9541 gactttctca tataaagttt tagccattgt cattctcctt taaaatttct aaaatacaat
     9601 cccccatttc atcggtattt aaatacgact tagcatttaa atccttagtc atttttcctt
     9661 gtgccaatgc taaagatata gcattttcta tatcctgtgc ggcttgttct tctttgaaac
     9721 tatactttaa catcaaagcc gcacttaaaa tttgagctat gggattggct atatttaaat
     9781 gagctatatc aggcgcactt ccacctgctg gctcataaag tccaaaacct ttatcattca
     9841 aacttgctga acttaacaaa cccaaagatc cattaatggc agctaactca tcgctcaaaa
     9901 tatcaccaaa aagatttgaa caaagcataa catcaaaaat gctaggattt tttacaatct
     9961 gcatcgcagc attatccaca tacatatact ctaagcttat atctttataa tcttttgcaa
    10021 catttgccac cacttctcgc cacaaaatag aacttgctaa aacatttgct ttgtcgatta
    10081 aatgcacttt tttctttctt attcttgcac tttcaaaagc aatatgagct atcctttcta
    10141 tctctttttt agtgtaaatt tcagtatcat acgcactttc tttacctaaa tcctgcttac
    10201 caaaataaat cccacctgta agctctctaa cacataaaat atccactcct ttttggataa
    10261 tctcattttt taaaggtgaa gcatgagtta aactttcata aattttacaa ggacgcaaat
    10321 ttgcaaacaa attaaaatgc tttcttaaag gcaaaagcga ggctctttca ggtctttgat
    10381 ctatgggcaa attatcccat ttaggcccac ccacagaacc aaataaaatc gcatcacttt
    10441 gctcacaaag ctttaaagtt tcatcactta aagccactcc ataagcatct atacttgcac
    10501 cacctatttt agcttcatta aattcaaaac taaaattgta tttttgtgcg ataaaagtta
    10561 aaatttttaa agcctctttc atcaccaaag gtcctatacc atctcctgct aggacagcta
    10621 ctttataagt tttcatgcca ttttcctttc ttctactttt aaagagcgat aaatcgcatt
    10681 gtaagcactc acaaaagctt gtgctgaagc ttctataaca tctgttgaaa ttccttttcc
    10741 atggaatttt ctccctttaa attccaaatc cacatccact tgtccttgag catctacccc
    10801 tgaacttttt gcattgatac tataagcttt tagcgcaggc tttaaattcg ttatcctagc
    10861 aatgcagtta aaaactgctt caacaggacc atttcctgtg caagcttcag tttttaactc
    10921 ttctttaata cgcatacaaa cacaagcagt tgggatattg ccactaatca cgcttaattt
    10981 ttcaatcaca aattcatttt cttcttcatt ttcatagctt aaaaacatca aagcttccaa
    11041 atcataatca tacacttgac cctttttatc cgcaaggcgt aaaaaacgct cataaacatc
    11101 atctaaatta taagtatttt catcatagcc taaattttca aggcaagttt ttatcatagc
    11161 ccttccactt cttgccgtca ttaacatacg attttcatga attcctatgg cactagggct
    11221 tatgatctcg taagtttgcc tatttttaag cactccatct tgatgaatgc ctgaactatg
    11281 agaaaacgca ttgctaccca ctatagcttt atgcgaaggt atactttcat tagtgatagc
    11341 tgaaactaat tttgaagttt taaagatatt ttcacattta atatcagtat aaaaaccttt
    11401 taaataatct ttcctagttt ttatcgccat aaccacttct tctaaagcac aattacccgc
    11461 cctttcgcca agtccattta tagtgcactc tatctgtctt gcaccttgta aaatagcact
    11521 taaactattg cccgttgcca cacctaagtc attgtgacaa tgcacagaaa tgatagcttt
    11581 gtctatattt ggcactttgt taaataaaat tttgatgata ttagcaaatt cgcttggcag
    11641 agtatagcct acggtatctg ggatatttat agttttagca cctgctttta tcgcattttc
    11701 caccataaaa caaagattat ctataggcgt tcttcctgca tcttcgcatg aaaattctac
    11761 atcatcagta taagatcttg ctcttataat cgctcttttt gccatagaca aaatttcatc
    11821 aaaatctttt tttaatttat cttgcatatg caaagtcgaa gtggctataa aagtatgaat
    11881 tctaaaatgc tttgccactt ttaaagcttc ataagccata tctatatctt tatccaatgc
    11941 tctagaaagt gcacaaatag ttgagttttt aaccttagaa gcgatctttt gcaccgcttt
    12001 aaaatcccct tgtgaagata ccggaaaacc tgcttctata acatctacgc ctaaattttc
    12061 aagcgctaaa gcgatttgta atttttgatt gatacccaaa gaactgccta aagcttgttc
    12121 tccatctcgc aaagtggtat caaagattat gattttatta tctttcatga tttaatcctt
    12181 taaaaccaaa cagactgaat gaattaaaaa ttcaaaaact taacaacaac aataaaaaat
    12241 taaaaatgta aaaaatgatt aaaaataaaa ttgagtttta gagtgaaagt tgcagtagca
    12301 gattaaaagt attgtcttta cttttttgtt gaactgaatt tgaaatttca aaaatttgtt
    12361 tcatcttttc ctcctttgtt aaaattaata cttaatgtat catattttta gtaaatgtgt
    12421 ttgtaaaatt cttaaattaa gaaaattatt gatataattg taattttaag taacaaaaag
    12481 gaagttgatg ttaaaagaac tcttagagat taaaaaagaa atggaacctg ttatccacga
    12541 agccaatgtg aaattaaatg tcctagctcg tgaagtcata gtccgaaaaa aagaatacga
    12601 aatttatggg cctatggtag atcgtgttta tcttgataat gccatttatg ttaaagttat
    12661 gtcaagcgga cgcgatgtaa aaacagacaa tgtgactata aaaaatggtt tttatatggt
    12721 ttttgttgcc cctgaaaaag aaagtacaaa agatatcaaa aataaactca aagtagctta
    12781 tgaaggactt gataacaaat ttatcgctac acttatacgc tcttgccaac gctttaaaga
    12841 gatcataaac aaaacccaag ctacacttgc taaagcttct aaaatgaatg tggtagtaaa
    12901 aacgaattta ggtgaagcaa gtgctgctct aaaatttaac atcactatag aatatactaa
    12961 agagaatcaa aaactcactc gtgaaaattc aaaatcagca ggaagtttca gagatactaa
    13021 aacttatatc aatcttgtag tagaaaaaaa tacagattct caaatttgtg aaaaactact
    13081 tgatgatgtt gaaaaatact ttatcggtgg aggttgattt cattaatgca agttataaaa
    13141 acttgcatta gattaaaatt tataattata tcctaaatat acaccataat ttgtttgttt
    13201 aggatcgtaa aagtttgaac ccactttatt ttgataaaaa tttctagaat tataatgaat
    13261 ttgctctgct ttaaagccta attctatttc attatgtggt gtcaaatcat ataaagcacc
    13321 tattttcgct ccataaaaat aaccgtcaaa attttgcgac aaagataaaa agcttgtttt
    13381 taaggtaaga tctgttcttg catatcctcc atacacacct aaaacagctc tggttttttc
    13441 aaaaagctta ggagtaaaat cataacctgt taaaaattta tgtgtagcaa aatcaccttc
    13501 gatttgaatt ttaggagttt tgataaaatc actaaattca tcagaataat tataaccagc
    13561 ataaattcta tgattttcat ttaaacgata tccaagtttt agaccaaacg atggtatatt
    13621 acctgaaata tctccattaa aattttgctt tgtattctta tgttttaact cactttttac
    13681 ttgagcatgc atccaagctg catcagcacc tataaaaaaa ccagaattct catctgctaa
    13741 agccaaattt gaaaacaaag tagcacttgc gataatgctt aataattttt tattcataac
    13801 ctaactcctt ataataaaat tcgatctaaa aaatttagat ctttttatat tatatattct
    13861 tcaaagatta aataagaatt ttttataaaa tacttaatct ttacataaaa atatgttaat
    13921 attttactta aatattattt tggcactacc atatcgctac gacattctat caccgtatgc
    13981 acatttccac gcgggttaaa atcccccaca actttaatcc attttggctt gagtttgtct
    14041 tttagagtat tataaatttc attgatactt gcttcatgtg aaacatttct atacataaaa
    14101 gtattgatat aaagttttat cgctttaagc tcaaccacaa atttatcagg catatactca
    14161 agataaatcg ttgcaaaatc aggataacct gaacgcggac aacaacacat aaattcaggc
    14221 aaggtgattt taatgatata gtcattttta gcatcatttg gccaaatttc catattttct
    14281 acatcaaatt ctttaatttc tttttcacca taacgcatga gctttcctta ttgaaaattt
    14341 ttagaaaatt atataaaaaa ttacttttag agcaattgaa aaataaacat ttttagcaaa
    14401 ttgcataaaa aagacaaata ttatattaaa taaagctttt tatactagaa taaggcaaat
    14461 ctttcaaaag gaaaaaaatg agaaaatcaa ttgcaattat aggcggtagc atcgcaggac
    14521 ttagcgcggc tttatttttc gcttcagcta aaaataaaga acttgacttt gatatcactg
    14581 tttttgatga gggtaaagca gatttaaaag cagcagcaat ttacaatgtt ccttttttcc
    14641 caaaaggtgc aaaagcagat gaaatttaca ctcacataaa agcacaaatt gcttctatgc
    14701 tcgaagtaaa atacatcgat tcaaaagtag taagcataag cggagaaaaa ggagatttta
    14761 ctgttaatga tgagcaaggc ttgggtataa aagcagatta tatcatcgta gcaacagggg
    14821 caaacaaaag cgatatcaaa gaacttgaag attttgtaat accgcatgag cttatgccaa
    14881 aaccaaacaa attttgcttc aaacatcacg ggagacagat tatcaaagaa ggaatttacg
    14941 cagcaggact tgcttcaggt gttacgacta tggtagcttg cgcgatggga agtgccaatg
    15001 aagcagcttg cgcgatttta agcgatatca aaggtgcagt aagcgtatat cacgatacac
    15061 ctactacaag agtttaaatc atcaaagcac aaaaggtgtg ctttgataca catcataatt
    15121 gagccaattt gcaaaaatgg tatttgcatt tgaacgccaa ttgtatttta tattgccctt
    15181 tttatcataa taatttttag ctttttgtat gaaattatct cttacatatt cttgatgtaa
    15241 agtctcttta aaatattcca aatgccctaa aataaaaata ttcttttcat ctcttaataa
    15301 agccgaaccg atttttttat ttctaagcaa aatttttaat ttcccttgtt tttgtagtgc
    15361 taaaatttgc tcttcatcca tgctagaatg tcttgaatga ggcattaaaa ccttttcatc
    15421 taaatttgtt aaaagcagat caggcgaaac tttatcatgc ttatagactc caaaaatttt
    15481 cttatctaaa gagattttat ccacaccata aaagtatttt aaagcagcca tggcacccca
    15541 acaaatatac atagaacttg ttacattttg ctttaaaaaa tcaaaaattt ctagcaattc
    15601 ttcccagtaa gcaacctttt caaaatccat ttgttccaca ggagctcctg taacaatagc
    15661 accatcaaat ttatgttttt taacctcttc aagacccttg taaaattttt ccaaatgagt
    15721 aaaaggagta tttttaccca catagctagt cgtggctaaa agtgtgatat ttacttgcaa
    15781 aggagaattt gcaagtaagc ttagaatttg attttctgtt tcaatttttt ttggcataag
    15841 attgacaatc aaaatttctt gcggcctgat atcttgatgc tttgctctcc ttaatcccat
    15901 gataaaagca tgctctttta aaagctcata agcgggtata ttttctggaa taatcagtgg
    15961 cattttttct cctttattta ataaacctta tttatgataa agcatggtgg aatttttatc
    16021 tcattcactc aatgcaaaca cacttttaac tttctatagc ttgttttaaa tccgctatca
    16081 aatcatcgct attttcaagt cctatgctta agcgtatagt agctttcgta atgcctgctt
    16141 tttggagttc ttcttcgctt agttgcgaat gagtagtaga agcaggatgg atgatcaaag
    16201 acttgctatc acccaaattt gcagcaagta agaaaagttg agttttatca caaattcttc
    16261 tagcatgctc ataatcttta gcttcaaagc ttaaaagccc gctagcaaaa tttttatcaa
    16321 aatatttttt aaataaatta tgataagcat tacttgctaa agtaggataa tttacgccct
    16381 tgatatcagg atgagaattt aaaaaattcg caactttttc agcattttga ctgtgttttt
    16441 ctatacgcac tgccaaggtt tcaagtcctt gtaaaagtaa ccaagcattt tgaggtgcta
    16501 agctagctcc tagatctcta agccaagtga tgatgactct aatactaaaa atcggcaaat
    16561 caagtgtatt taaattcagt ccatgataac ttggatcagg agtgttaaaa gctttatatc
    16621 tatcgttatt tttaagcaag tcgtttaaat cttttctttc tataagtgct ccacccaaag
    16681 cagtgccttg accgcttaca tatttactta aactatgcac gattacatcc acgccatgtt
    16741 taaaaggttg gagtaagaaa ggagtagcaa cggtattatc acaaatgcta acgattttat
    16801 gtttttttgc tatttggctt attttttcta tatcagctat ggcaatttga ggatttgaaa
    16861 gactttcgaa aaaaatcgct tttgtgtttt gatctataac tttttccaag ctatctaaat
    16921 catcgatatc aaattcccta gcttctatgc caaaattttt aagtgtgtga gaaattaaag
    16981 tttgagtccc accataaatt ttgttcgaat acgcgacatt atctcccgaa cttgctaaat
    17041 tgataagagc ataaaaacaa gctgccatac cgctagtaac aggaattcca aaagcccctc
    17101 cttcgatatt agcaagtctt tgtcctaaaa catcgcttgt aggattgcta agtcttgagt
    17161 aaatattgcc aagttcttga agattaaacc ttgctgcagc ttgatccaaa ttttcaaaat
    17221 tatacgcagt gttttgatat ataggcacac taatacttct ttgagtatca aaattataag
    17281 ctccgtgtaa tgctaaagtt tctttattga aattcatttt ttatccttat tgtgtcaatg
    17341 aaaaaatgtt aaaaagcttt ttatcggctt taaattaggc tatttgaaaa tgtaaattta
    17401 tagaatatga gtatatacga gtagattaag cgtgccaagc acgcatacag aaagaagaaa
    17461 gcattaagtt aaaactaata taagacattt tttctccttt ctaaaaaatt attaattatt
    17521 ctatctttaa aaaataaaat taaaattaaa ttttaaaaaa tttatatcac attgcttaaa
    17581 attttattgc aactcacccc tagcaagagt gagttagcaa taaattgaag gcagttcaag
    17641 cctaagccta gtattacaag actaccaaga taggcttgta aagcaaggct tgctccctta
    17701 aagggagcaa aaaacaatat tttatagaat actaagctta aattattgtt taagctggat
    17761 tagagtttga agcatttgat cactcgttga aatggttttt gaatttgctt gataacctct
    17821 ttgaatgata ataagctctg ttaaagaacg acttaaatcc acatttgaca tttcaagagc
    17881 tgaggttttc atctcaccac gacctcctgt tcctgcttca cctactacga tattaccact
    17941 atttgcagtg actttaaaaa gatttccacc gatttcttca aggcctgagt tatttgctac
    18001 tgaagccatt gctatttttg ctacagcaaa ggttttgcca ttagtaaatt cacctaagat
    18061 atttccttta tcatctacac ggatagcatc aggttttaag ttacctgaag tataaccatc
    18121 agttgcctgt cctgttagag ttgaagcaga atttgagctt acaaggccgt cattgcttcc
    18181 acttgttcca aaggaaagtt tgatttgttg atttggagcg gcaccattat ttggtgaaaa
    18241 atttatcgtt cttggattat aatttgacaa agatccatca ttattaaatc ttgctgttcc
    18301 tacgatgata ttatttggtc cttcgcctgt agtgttaatc tctgcaggtt cgggtacacg
    18361 gatgatcatt tgccattcat tacccccatc ttgagtggtg ctttgcttaa caaactgcac
    18421 ttctaaagta tgttttgaac ctaaggaatc ataaatttca agtcctgctg aaaaagcaga
    18481 aagttttaga agttcacttt gcttaacctg attgcctgca gggaaagaac catcaagtcc
    18541 tttaaagatt ttagtaaaag catcattagt acttactgtt cctctttcat ctgtataagc
    18601 agtgatattg aaattcatat tatgagagcc aaaattcaat ggcgcaccac ctgtaacaag
    18661 tattggacta tttgaagttt cattaacatt tgtaagagaa aaagctcctg aagaatttac
    18721 tacaacttta acattttcat tgacatctgc tgcagcaaaa gttccatttc catcatagtc
    18781 tactccatat ctagcatctc tttgtaaaag ctctcttaaa tcttcggtag tgtgaaaagt
    18841 ccttatattg gtatttaata aagaaccatt cattactgca ttataataat tttgcgaacc
    18901 tatagtagca gcatctgtac cattccaagt agggggatta gcagggggat tacctggtgt
    18961 acctggaata taattaaaac ctccatcggg attatacata ggaggaagag tttgaggcga
    19021 agaactatag atatatttat gcgctgttat tatttgagca cttctaccac ctgttaaatt
    19081 atttggtgtt ccagcttgac cacctgtagc tgtccataaa gaagcattat tttgtggtat
    19141 tgaagtatat tgattgaatg tatttgttgc agcatcccaa gtagctgtcc aagcttcacc
    19201 tgctgtattg gtagcattaa ctacaagatt aatatttttc atattatctg tagtaccatc
    19261 ggcattatca ttgacaaaat ctatacccga gccatctgca tttttaaccg ctcttactcc
    19321 tgttccctct cttgcatccg ttggtgcggt aaaggtattg atataagcga tagcctcatc
    19381 tatactgcct atagtatcat tttgaatagc aactccatta atcactatat ctaatcttgt
    19441 cttttgatta ccattgcccc aaaaagcagc ggtttgattt tgatgtaaat ttggatcaaa
    19501 agcattgact ccaagttgat tcgtagaata tttagcatcc gcataagata cccaaatccc
    19561 ttgtccatct ctaagattta atcctgtgcc attagcatta aaaagtgatc ctgcatccac
    19621 acccttttcc gtcacttcta cagcattttt agaagtcgta taaaactgag tagttcctgt
    19681 atcattttca tctttagttt cacctgtttt ttgattaaaa ccatgcacag aatcaagaga
    19741 atacaaagga cgacttgctg ttcctatatt taaaccacta tttaaattcg ctttgatggc
    19801 tacttctgtg gattgcgctg cagggatatg cataccggga tcgataaaaa tgttttgtgg
    19861 agttcttgaa ctatctatac tttgagtatc ccagttgata ttccaccctt ggacaacaaa
    19921 acctgcatta ttaacaaaat ttccataagc atcgagttta aaatccccgc tccttgtaag
    19981 atagtttgta agaccaccat catcactcac cataaaaaaa ccatcaccat ttatagcaac
    20041 atcagtgttt ttatctgtgg tttgaactga accttgagaa tgaattctag ttgtagaact
    20101 tactgaaacg ccaagaccga tttgaagtgg attagatccg cctcttccat cagttggagc
    20161 tgtagcgatt ttcacagttt ggctaaacat ggttccaaaa tctgcacggg agtatttaaa
    20221 accagtggta ttaacatttg aaatgttatt accttcaaca tccatcgcaa cttgatgtgc
    20281 ttgtagtccg cttacgccag accaaagtga tctcatcatc ttaaatcctt tataaaatat
    20341 tgctttaaaa aatttaacgc tttggcttta aaaaactttt gcgtttatgt gaagtttaca
    20401 agcaaattct gttccaactt ttgaaatttt ttaaaaattt atagaaaaaa tttaaaggta
    20461 ttttaggagt ttatgaagct ttgggctttt gtgtaataaa aattactaaa atcacaccct
    20521 aactcttaaa tttgctgcat gggttaaagc tactgcaata gcatctgtga tatccaaagg
    20581 cttgatatct ttactaagtc ctaaaagcct ttttaccata aaagcaactt gttctttagt
    20641 tgctttggct tttcctgtaa cggctttttt tacttgtaag ggagtgtatt ctgcaaagtc
    20701 tccatgaatt tgaagaattt ttaaagatag ggctccgcga aattgtgcga gttttaaaac
    20761 ggtttttgga ttgtaagcaa aaaagatatc ttctatagcc acctcatcaa aagaatgatt
    20821 tttaaaaatc aagtccaaac cctcacaaag ctctgtgatt tgatactgta aggtgcttgg
    20881 ctttatcttt ataagtcctg cttctatgag aatgtttttt cctttgttgg cttctatgat
    20941 agcataacca caatttctcg aacctggatc tatacctaaa attttcaaat tcataccttt
    21001 tgaaaaataa aatacgaaag cggattttaa ccttttttta taaaatttaa gataaaattt
    21061 atacattatg caaaatttaa agagagatta tgaatccaag ccaaatactt gaaaatttaa
    21121 aaaaagaatt aaacgaaaac gaatacgaaa actatttatc aaatttaaaa ttcaacgaaa
    21181 aacaaagcaa agcagatctt ttagttttta acgctccaaa tgaactcatg gctaaattca
    21241 tacaaacaaa atacggtaaa aaaatcgcac atttttatga agtgcaaagt ggaaataaag
    21301 ccatcataaa tatacaagca caaagtgcta aacaaagtaa caaaagcaca aaaatcgaca
    21361 tagctcatat aaaagcacaa agcacaattt taaatccttc ttttactttt gacagttttg
    21421 ttgtggggga ttctaacaaa tacgcttatg gagcatgtaa agctataaca cataaagaca
    21481 agcttggaaa actttataat cctatctttg tttatgggcc tacaggactt ggaaaaacac
    21541 atttacttca agcggttgga aatgcaagct tagaaatggg aaaaaaagtt atttacgcta
    21601 ccagtgaaaa ttttatcaat gattttactt caaatttaaa aaatggctct ttagataaat
    21661 ttcatgaaaa atatagaaac tgcgatgttt tacttataga tgatgtgcag tttttaggaa
    21721 aaaccgataa aattcaagaa gaatttttct ttatatttaa tgaaatcaaa aataacgatg
    21781 gacaaatcat catgacttca gacaatccac ccaacatgct aaaaggtata accgaacgct
    21841 taaaaagtcg ttttgcacat gggatcatag ctgatataac tccacctcaa ctagatacaa
    21901 aaatagccat cataagaaaa aaatgtgaat ttaacgatat caatctttct aatgatatca
    21961 taaactatat cgccacttct ttaggggata atataagaga aatcgaaggt atcatcataa
    22021 gtttaaatgc ttatgcaacc atactaggac aagaaatcac actcgaactt gccaaaagtg
    22081 tgatgaaaga tcatatcaaa gaaaagaaag aaaatatcac tatagatgac attttatctt
    22141 tggtatgtaa agaatttaac atcaaaccaa gcgatgtgaa atccaataaa aaaactcaaa
    22201 atatagtcac agcaagacgc attgtgattt acctagctag ggcacttacg gctttgacta
    22261 tgccacaact tgcgaattat tttgaaatga aagatcatac agctatttca cataatgtta
    22321 aaaaaatcac agaaatgata gaaaatgatg gttctttaaa agcaaaaatc gaagaactta
    22381 aaaacaaaat tcttgttaaa agtcaaagtt aagtgaaagg atgtgaaaaa taaattctag
    22441 agtgtgaaaa aaagaaatta agcaaagtat gataaaatac aaatttgatt attttgcttt
    22501 gaagaatttc acaatttcaa caagcttatt attacaacga atttaaaatt aaaataaacc
    22561 aaggagaaaa aatgaagtta agtatcaata aaaatacttt agaatctgca gtgattttat
    22621 gtaatgctta tgtagaaaaa aaagactcaa gcaccattac ttctcatctt ttttttcatg
    22681 ctgatgaaga taaacttctt attagagcta gtgattatga aataggtatc aactataaga
    22741 taaaaaaaat ccgcgtagaa tcaagtggct ttgctactgc aaacgcaaaa agtattgcag
    22801 atgttattaa aagcttaaac aatgaagaag ttgttttaga aaccattgat aattttttat
    22861 ttataagaca aaaaagcaca aaatacaaac ttcctatgtt taatcatgaa gattttccaa
    22921 attttccaaa tacagaagga aaaaaccaat ttgacattga ttcaagtgac ttaagtcgtt
    22981 ctcttaaaaa gatattacca agtattgata caaacaaccc aaaatactcc ttaaatggtg
    23041 catttttaga tataaaaaca gataaaatta acttcgtagg aactgataca aaacgccttg
    23101 caatctatac tttagaaaaa gcaaataatc aagaatttag ttttagtatc cctaaaaaag
    23161 ctattatgga aatgcaaaaa cttttctatg aaaaaataga aattttttat gatcaaaata
    23221 tgcttattgc taaaaatgaa aactttgaat tctttacaaa acttattaac gataaatttc
    23281 cagattatga aaaagttata ccaaaaactt tcaaacaaga actcagcttt tcaactgaag
    23341 attttataga tagtcttaaa aaaatcagcg ttgtaactga aaaaatgaaa cttcatttta
    23401 acaaagataa aatcatcttt gaaggtataa gtttagacaa tatggaagca aaaacagagc
    23461 ttgaaattca aacaggagta agtgaagaat ttaatcttac tataaaaatc aaatatttac
    23521 ttgatttctt aacttctata gaagaagaaa aattcacttt aagtgtaaat gaacctaatt
    23581 cagcatttat agtcaaatcc caaggactat caatgattat catgcctatg attttgtaat
    23641 aaaacaagta aaagataaag gaaaaatatg caagaaaatt acggtgcgag taatattaaa
    23701 gtcctaaaag gcctagaagc tgttagaaaa cgcccaggta tgtatatagg agatacaaac
    23761 ataggcggac ttcatcatat gatttatgaa gttgtggata attctatcga tgaagctatg
    23821 gcaggacatt gtgatactat agatgtagaa atcactacta aaggaagctg tatagttagt
    23881 gataatggtc gtggtattcc tgttgatatg cacccaactg aaaatatgcc aactttaact
    23941 gttgttttaa ctgtcctaca tgcaggggga aaattcgata aagatactta caaagtttca
    24001 ggcggtttgc acggtgttgg ggtttcagtt gtaaatgcac tctctaaaaa acttgtagct
    24061 acagttgaaa gaaatggaga aatttatcgt caagaatttt cagaaggtaa agttatcagt
    24121 gaatttggtg tgataggaaa aagtaaaaaa acaggaacaa ctatagaatt ttggcctgat
    24181 gatcaaattt ttgaagtgac tgaatttgat tatgaaattt tggctaaaag atttcgtgaa
    24241 cttgcatact taaatccaaa aatcactata aattttaaag ataaccgcgt aggcaaacat
    24301 gaaagttttc actttgaagg tggaatttct cagtttgtta tagacttaaa taaaaaagaa
    24361 gctttaacta aagcaatttt ctttagcgta gatgaagaag atgtgaatgt tgaagtagct
    24421 ttgctttaca atgatactta tagtgaaaat ttactctctt ttgtaaataa tatcaaaact
    24481 ccagatggtg gaacacacga agctggtttt agaatgggtt taactcgtgt gataagtaac
    24541 tatatagaag caaatgcaag tgctagagaa aaggataata aaatcacagg cgaagatgtg
    24601 cgtgaaggct tgatcgctgt tgtgagtgta aaggtgcctg aaccacaatt tgaaggacaa
    24661 accaaaggaa aacttggttc aacttatgtg cgtcctatag tttcaaaagc aagttttgaa
    24721 tatttgacta aatattttga agaaaatcct atcgaagcta aagctataat gaacaaagcc
    24781 ttaatggcag ctagaggaag agaagcagcg aaaaaagcta gagaattaac gcgtaaaaaa
    24841 gaaagtttaa gcgtaggaac tttaccaggg aaattagctg attgtcaaag taaagatcca
    24901 agtgaaagtg aaatttatct tgtggaaggg gattctgcag gaggttctgc aaaacaaggt
    24961 agagaaagat ctttccaagc tatactgcct ttgcgtggta aaattttaaa tgttgaaaaa
    25021 gcaagactag ataaaatttt aaaatctgag caaattcaaa atatgattac agcttttggc
    25081 tgtggtatag gtgaagattt tgatctttca aaacttagat atcataaaat catcatcatg
    25141 acagatgcgg atgttgatgg atcacatata caaaccttgc ttttaacttt cttcttccgt
    25201 tttatgaatg aacttgtagc aaatggacat atttatctag cacaaccacc tttatatctt
    25261 tataaaaaag ctaaaaagca aatttattta aaagatgaaa aagctttgag cgaatacctg
    25321 atagaaacag gaatagaagg tttaaactat gaaggtatag gaatgaatga tttaaaagat
    25381 tatttaaaaa tcgttgcagc ttatcgtgcg attttaaaag atcttgaaaa gcgttttaat
    25441 gtgatttctg tgatacgcta tatgatagaa aattcaaatt tagttaaagg aaataatgaa
    25501 gaattattta gtgtaatcaa acaattttta gaaacacaag gacacaatat cttaaatcat
    25561 tatatcaacg aaaatgaaat tcgagctttc gttcaaactc aaaatggctt agaagaactt
    25621 gtgatcaatg aagaactttt cactcatcca ctatatgaag aagcaaatta tatttttgat
    25681 aagattaaag atagaggctt ggaatttgat aaagatattt tagaagttct tgaagatgtt
    25741 gaaaccaatg ctaaaaaagg tgctactata caacgctata aaggtttagg ggaaatgaat
    25801 cctgagcaac tttgggaaac tacaatggat ccaagcgtaa gaagactttt aaaaatcact
    25861 attgaagatg cacaaagtgc aaatgatacc tttaatctct ttatgggtga tgaggttgaa
    25921 ccaagacgcg attatatcca agcacacgct aaagatgtaa agcatttgga tgtgtaaatt
    25981 tatcattgaa gaaatgattt cttcaatgag ttttgttttg taagaatata gctagaggaa
    26041 ttcttcttct tgtatcgtat ttttctccat aatatttttc aagataattt aaaatttttt
    26101 cttcatcttc aggttctatt tcccaaagtc cttcactatc ttgcatccat cttatagctg
    26161 ctaaccaagc ttttttactt gcatgcatat tagtaatgag attggatcca tgacaagcta
    26221 aacaatttgc ttccactaaa ggtgaatcag gatcgataat caatcctgta tcagggttaa
    26281 tttcaagatt ttgagcccaa cttgcactta aaaacaatgc taagatcaat ataatttttt
    26341 tcatacttaa actccataaa cattaactct atggcatgca ttattgatat atcctcctgg
    26401 attccactgt gctaaaacca taggttgact gttaccttga ctatcgatag ctcttgccca
    26461 aatttcataa tatccttttg ttggtattga tatttgagca ctccattttt gccatgctaa
    26521 tctatttaat ggtttttcta cctttgcttt agtccatgtt acgccataat cattgcttac
    26581 ataaacttca ctaacttcaa gttctccagc ccaagcttta cctctaactt caaatttttt
    26641 atttgctttt atttcagaac catttttgat attagtaatt acagatctta taggcattga
    26701 ttctatgatt ttcatctcgc ctttatagtt aaaatctcct ggttttaccg gatttacagg
    26761 aactttataa gaaccttcca ttttttcacc atcatgaatt ttatttctta ctgaaatttt
    26821 ataaagccat ttaccgcttg tacttgcagg gtaaccacca caaacaagtc taagtggata
    26881 gccattgact aaaggaatat ctttgccttc ataagcccaa gctattagag tttcatcttg
    26941 taaagcttta gaaataggaa ctcctctact aataggtgaa gtttcttcac catttaattt
    27001 tgtatctatg ccataatatc cgatataaac cgcatcattt ttgatgccac aatcttttaa
    27061 aatatctttt aaacgcactc ctgtccatct accgcaagct actgcaccat aaccccattg
    27121 agttcctttt gtgctaggta taacttcgga tctaccattt ccaccgcatt caactgttaa
    27181 ggcataagta taggttttaa atttcttttt taaatcttct atggtgtaag attttttatt
    27241 gataatgctt tctccatcga tttctaaagt ccaacctttg tgaagtcttt cttttatcgt
    27301 ttctaggctt ggtggtaagc cattatttct aacaaagaaa ttttcaggtt tagtaaaatc
    27361 agaatcaaga gcataaattt cagtttctgc tgttaatggt ttttcgccat ggtagataag
    27421 atctttttta ccttctattt taaaatcagg caattctttt gccaaagcct tacttcctaa
    27481 aaaattctca aaagaaaaat ttgacaatac actaatgcca aataaaccaa gtcctatatt
    27541 ttttagaaag tctctacgat tttctttttg atcgttctgt ttcattgaaa tatccttaaa
    27601 tatttatata atcttttatt ttattataaa ttt
//
LOCUS       DAZBIH010000012        25058 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.012, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000012 DAZBIH010000000
VERSION     DAZBIH010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 25058)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25058)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25058
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.012"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(1..1169)
                     /locus_tag="ACHFOB_000419"
                     /pseudo
     CDS             complement(1..1169)
                     /locus_tag="ACHFOB_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853682.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006486 - protein glycosylation [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
     gene            complement(1173..2720)
                     /locus_tag="ACHFOB_000420"
     CDS             complement(1173..2720)
                     /locus_tag="ACHFOB_000420"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFN5799249.1"
                     /translation="MNLKQISVIIIVKNAEQTLLECLNSLKDFDEIILLNNESIDNTL
                     NIANEFKKDFANLYIYHNAFIGFGALKNLALSYAKNDWILSIDADEVLENECIKELKN
                     LELQEDNIIALSRKNLYKGEWIKACGWSPDYVLRIFNKNFTRFNDNLVHESLVLPSNV
                     KKIHLKNGLKHYAFRDISHLINKMQYYSSLWAKQNIHKKSGVLKANLRAFWTFFRNYF
                     LKNGFLYGYQGFTISVCNALGTFFKYMKLYELQKQKPKTCALIITTYNQKERLKLVLD
                     SVKNLTFLPNEVLIADDGSKEDTARLIEEYQKDFPCSLKHIWQEDEGFRAAKNRNNAI
                     RVSKSEYIILIDGDMILEKDFIKNHFEFAKRKVILQGSRVILNKNESEEILKNDDYSL
                     AFSKKDFKSYKNSFLAKIIYKISKIDQKFFNTKEIIKGSKTCNMSFFKADFDELDGFN
                     ENFIGWGREDSEFVARFLFNKGIFRRLKFKAIAYHIYHEENSKKMLESNHQIYLDTIK
                     NKKISWR"
     gene            complement(2717..3604)
                     /gene="htrB"
                     /locus_tag="ACHFOB_000421"
     CDS             complement(2717..3604)
                     /gene="htrB"
                     /locus_tag="ACHFOB_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A biosynthesis lauroyl acyltransferase
                     HtrB"
                     /protein_id="HFN5799250.1"
                     /translation="MKNSDRIYLSLYYILKFFVTFMPDCILHFLALIVARIAFHLNKK
                     HRKIINTNLQICFPQYTQKERDKLSLKIYENFAQFGIDCLQNQNTTKEKILNKVNFIN
                     ENFLIDALALKRPIIFTTAHYGNWEILSLAYAAKYGAISIVGKKLKSEVMYEILSQSR
                     TQFDIELIDKKGGIRQMLSALKKERALGILTDQDCVENESVRLKFFNKEVNYQMGASL
                     IAQRSNALIIPVYAYKEGGKFCIEFFKAKDSQNASLEELTLYQAQSCEEMIKKRPWEY
                     FFFHRRFASYNEEIYKGAK"
     gene            complement(3594..4622)
                     /gene="waaC"
                     /locus_tag="ACHFOB_000422"
     CDS             complement(3594..4622)
                     /gene="waaC"
                     /locus_tag="ACHFOB_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase I"
                     /protein_id="HFN5799251.1"
                     /translation="MKIAIVRLSALGDIIQSAVVLQFIKNFKKDIEIHWFVDEKFEGI
                     LKNHPLIDKLYALPLKDKKILKSLKILLKARKNNYNAVIDLQGLIKSAIVSRILSRNN
                     FGFDKNSLKESFAHNFYNQKLELDYNENVFVRYLSLTSFMLNTDFNAKNLAFKQDVFS
                     VDENLKQLLNNKLKLDKNEKNILIHVGSSVENKIYPKTKLAILCKLLINEFQQTKIWL
                     AWGNVKEYEFAKEVLNLSGIDETHIELAPKFNLEELMAFTKMMDLIIGNDSGPTHLAF
                     ALNKASITIFGATPSYRNAFQTHINKIIDTGKKIQNAKHIDKSDFCITRIEEEDIFKL
                     AKGLLNEK"
     gene            4688..5482
                     /locus_tag="ACHFOB_000423"
     CDS             4688..5482
                     /locus_tag="ACHFOB_000423"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN5799252.1"
                     /translation="MAKNEGYICVFDCESVPDVELIRKTLGFEGSDLEVSLKALQWQK
                     EQSGSEFLPLPYHKIISICAVLSDNFGKFIKVNKIDGQNEKEMIENFFNFIENYEPKL
                     VSFNGKNFDMPVLVLRALKYNLKAATYLDTQSDKWNNYKTRFSELKHCDLLESLGSNG
                     RGIKLDTLCSMVGLPGKYDVHGDEVMKLFYENELEKIYEYCESDVLNTYMLFLKYELI
                     KANVSEEDYVDFLSYMRDFLREKKSDRSYTEVFAKACESEISKVRS"
     gene            5541..6527
                     /gene="galE"
                     /locus_tag="ACHFOB_000424"
     CDS             5541..6527
                     /gene="galE"
                     /locus_tag="ACHFOB_000424"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003978 - UDP-glucose 4-epimerase activity
                     [Evidence IEA];
                     GO_process: GO:0006012 - galactose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HFN5799253.1"
                     /translation="MKILISGGAGYIGSHTLRQFLKTDHEICVLDNLSKGSKIAIEDL
                     QKIRAFKFFEQDLSDFQGVKALFEREKFDAIVHFAASIEVFESMQNPLKYYINNTVNT
                     TNLIETCMQTGVNKFIFSSTAATYGEPQTPVVSETSPLAPINPYGRSKLMSEEVLRDA
                     SMANPEFKHCILRYFNVAGACMDYTLGQRYPKATLLIKVAAECAAGKRDKLFIFGDDY
                     DTKDGTCIRDFIHVDDISSAHLAALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSG
                     VDFKVELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEKQC"
     gene            6521..8215
                     /gene="pglK"
                     /locus_tag="ACHFOB_000425"
     CDS             6521..8215
                     /gene="pglK"
                     /locus_tag="ACHFOB_000425"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type lipopolysaccharide transporter PglK"
                     /protein_id="HFN5799254.1"
                     /translation="MLKKLFFILSKEDKNFLFFLLVFSVFISFIETFAISLVMPFITL
                     ASDFSYFDRNKYLISLKEYLNIPVFEIIVYFGVGLIVFYVFRALLNAYYFHLLARFSK
                     GRYHAIAYKVFSKFLNINYEKFTQKNQSEILKSITGEVYNLSTMISSFLLLMSEIFVV
                     LLLYALMLLINYKITLFLSIFMVLNAFILVKILSPIIKKAGVRREEAMKNFFEILNTN
                     LNNFKFIKLKTKEDGVLSLFKAQSEAFSKANITNESVAAVPRIYLEGIGFCVLVFIVV
                     FLVLKNESDISGILSTISIFVLALYRLMPSANRIITSYHDLLYYHSSLDIIYQNLRQE
                     EENLGEEKLSFNQELKICNLSFGYEGKKYLFKNLNLNIKKGEKIAFIGESGCGKSTLV
                     DLIIGLLKPKEGQILIDEQELNANNTKNYRQKIGYIPQNIYLFNDSIAKNITFGDAVD
                     EEKLNRVIKQANLEHFIKNLPQGVQTKVGDGGSNLSGGQKQRIAIARALYLEPEMLVL
                     DEATSALDTQSEAKIMDEIYKISKDKTMIIIAHRLSTITQCDKVYRLEHGKLKEEK"
     gene            8212..9291
                     /gene="pglH"
                     /locus_tag="ACHFOB_000426"
     CDS             8212..9291
                     /gene="pglH"
                     /locus_tag="ACHFOB_000426"
                     /EC_number="2.4.1.292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc-alpha-(1->4)-GalNAc-alpha-(1->3)-
                     diNAcBac-PP-undecaprenol
                     alpha-1,4-N-acetyl-D-galactosaminyltransferase"
                     /protein_id="HFN5799255.1"
                     /translation="MMKISFIIATLNSGGAERALVTLANALCKEHEVSIIKFHAGESF
                     YKLENEVKVTSLEQFRFDTLYHKIASRFKKFFALRKALKESKSDVFISFLDTTNIACI
                     AAKIGLKTPLIISEHSNEAYLKPKIWRFLRRVSYPFCDALSVLGSSDKVYYERFVKRV
                     KLLLNPCHFSDEISFDSSFEKENLVLFIGRLDHNKNPVMFLKAIAHLDKNLQENYKFV
                     IAGDGQLRQELEYKVKSLGIKVDFLGRVENVKALYEKAKVLCLCSFVEGLPTVLIESL
                     YFEVCRISSSYYNGAKDLIKDNHDGLLVGCDDEIALAKKLELVLNDENFRKELVNNAK
                     QRCKDFEISHIKEEWLKLIAEVKNA"
     gene            9284..10213
                     /gene="pglI"
                     /locus_tag="ACHFOB_000427"
     CDS             9284..10213
                     /gene="pglI"
                     /locus_tag="ACHFOB_000427"
                     /EC_number="2.4.1.293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GalNAc(5)-diNAcBac-PP-undecaprenol
                     beta-1,3-glucosyltransferase"
                     /protein_id="HFN5799256.1"
                     /translation="MPKLSVIVPTFNRQVLLEKAIKSIQNQDFKDLEIIVSDDNSSDD
                     TKSVVQNLQKDDDRIKYFLNQNYKQGPNGNKNNGLDQASGEFVTFLDDDDELLSGALS
                     TLMQKANEGYAHVFGNCLIEKEGNLSKEFSGKGLEKDSEISKKDFLMAKFSGEFFSVF
                     KKSLLENKRFNEEFYGNEATLWVNLYKEKSFYIHKAFRIYRIFRQDSVTLGASKNAYR
                     VYLGYLELAKILENELRMSKDKDYKKTCASYYKMAAYYAKLAKNYKALYKCLFKSLSI
                     KINAPALILLILSIIPNNMIEKLSKIRVALCKN"
     gene            10201..11298
                     /gene="pglJ"
                     /locus_tag="ACHFOB_000428"
     CDS             10201..11298
                     /gene="pglJ"
                     /locus_tag="ACHFOB_000428"
                     /EC_number="2.4.1.291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylgalactosamine-N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     4-alpha-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN5799257.1"
                     /translation="MQKLGIFIYSLGSGGAERVVATLLPILSLKFEVHLILMNDKISY
                     EIPECQIHFLECSKPSENPILKFLKLPFLALKYKKLCRNLGIDTEFVFLNRPNYIALM
                     ARMFGNKTRLVINECTTPSVMYMKNNFNSLVNKFLISLLYPKADLILPNSKGNLEDLV
                     QNFSISPKKCEILYNAIDLENIGQKALEDIALKDKFILSVGRLDKGKNHALLIRAYAR
                     LKTDLKLVILGEGVLKDELLALIKELNLEEKVLLLGFDNNPYKYMAKCEFFAFASVFE
                     GFSNVLIESLACSCAVVCTDHKSGARELFGDDEFGLLVEVDNENSMFQGLKTMLEDDK
                     LRKAYKNKAKTRAKAFDKVKIARDALKYLLG"
     gene            11302..13443
                     /gene="pglB"
                     /locus_tag="ACHFOB_000429"
     CDS             11302..13443
                     /gene="pglB"
                     /locus_tag="ACHFOB_000429"
                     /EC_number="2.4.99.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphooligosaccharide--protein
                     glycotransferase"
                     /protein_id="HFN5799258.1"
                     /translation="MLKKEYLKNPYLVLFAMIVLAYVFSVFCRFYWVWWASEFNEYFF
                     NNQLMIISNDGYAFAEGARDMIAGFHQPNDLSYYGSSLSTLTYWLYKITPFSFESIIL
                     YMSTFLSSLVVIPIILLANEYKRPLMGFVAALLASVANSYYNRTMSGYYDTDMLVIVL
                     PMFILFFMVRMILKKDFFSLIALPLFIGIYLWWYPSSYTLNVALIGLFLIYTLIFHRK
                     EKIFYIAVILSSLTLSNIAWFYQSAIIVILFALFALEQKRLNFMIIGILGSATLIFLI
                     LSGGVDPILYQLKFYIFRSDESANLTQGFMYFNVNQTIQEVENVDFSEFMRRISGSEI
                     VFLFSLFGFVWLLRKHKSMIMALPILVLGFLALKGGLRFTIYSVPVMALGFGFLLSEF
                     KAILVKKYSQLTSNVCIVFATILTLAPVFIHIYNYKAPTVFSQNEASLLNQLKNIANR
                     EDYVVTWWDYGYPVRYYSDVKTLVDGGKHLGKDNFFPSFSLSKDEQAAANMARLSVEY
                     TEKSFYAPQNDILKSDILQAMMKDYNQSNVDLFLASLSKPDFKIDTPKTRDIYLYMPA
                     RMSLIFSTVASFSFINLDTGVLDKPFTFSTAYPLDVKNGEIYLSNGVVLSDDFRSFKI
                     GDNVVSVNSIVEINSIKQGEYKITPIDDKAQFYIFYLKDSAIPYAQFILMDKTMFNSA
                     YVQMFFLGNYDKNLFDLVINSRDAKVFKLKI"
     gene            13453..14583
                     /gene="pglA"
                     /locus_tag="ACHFOB_000430"
     CDS             13453..14583
                     /gene="pglA"
                     /locus_tag="ACHFOB_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N,
                     N'-diacetylbacillosaminyl-diphospho-undecaprenol
                     alpha-1,3-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN5799259.1"
                     /translation="MRIGFLSHAGASIYHFRMPIIKALKDRKDEVFVIVPQDEYTQKL
                     RDLGLKVIVYEFSRASLNPFVVLKNFFYLAKVLKNLNLDFIQSAAHKSNTFGILAAKW
                     AKIPYRFALVEGLGSFYIDQGFKANLVRFVINSLYKLSFKFAHQFIFVNESNAEFMRN
                     LGLKENKICVIKSVGINLKKFFPIYVESEKKELFWKNLNIDKKPIVLMIARALWHKGV
                     KEFYESATMLKDKANFVLVGGRDENPSCASLEFLNSGAVHYLGARSDIVELLQNCDIF
                     VLPSYKEGFPVSVLEAKACGKAIVVSDCEGCVEAISNAYDGLWAKTKNAKDLSEKISL
                     LLEDEKLRLNLAKNAAQDALQYDENIIAQRYLKLYDRVIKNV"
     gene            14576..15178
                     /gene="pglC"
                     /locus_tag="ACHFOB_000431"
     CDS             14576..15178
                     /gene="pglC"
                     /locus_tag="ACHFOB_000431"
                     /EC_number="2.7.8.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl phosphate
                     N,N'-diacetylbacillosamine 1-phosphate transferase"
                     /protein_id="HFN5799260.1"
                     /translation="MYEKVFKRIFDFILSLVLLVLFSPVILITALLLKITQGSVIFTQ
                     NRPGLDEKIFKIYKFKTMSDERDEKGELLSDELRLKAFGKIVRSLSLDELLQLFNVLK
                     GDMSFVGPRPLLVEYLPLYNKEQKLRHKVRPGITGWAQVNGRNAISWQKKFELDVYYV
                     KNISFLLDLKIMFLTALKVLKRSGVSKEGHVTTEKFNGKN"
     gene            15165..15755
                     /gene="pglD"
                     /locus_tag="ACHFOB_000432"
     CDS             15165..15755
                     /gene="pglD"
                     /locus_tag="ACHFOB_000432"
                     /EC_number="2.3.1.203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine N-acetyltransferase"
                     /protein_id="HFN5799261.1"
                     /translation="MARTEKIYIYGASGHGLVCEDVAKNMGYKECIFLDDFKGMKFES
                     TLPKYDFFIAIGNNEIRKKIYQKISENGFKIVNLIHKSALISPSAIVEENAGILIMPY
                     VVINAKAKIEKGVILNTSSVIEHECVIGEFSHVSVGAKCAGNVKIGKNCFLGINSCVL
                     PNLSLADDSILGGGATLVKNQDEKGVFVGVPAKRKI"
     gene            15853..17013
                     /gene="pglE"
                     /locus_tag="ACHFOB_000433"
     CDS             15853..17013
                     /gene="pglE"
                     /locus_tag="ACHFOB_000433"
                     /EC_number="2.6.1.34"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylbacillosamine transaminase"
                     /protein_id="HFN5799262.1"
                     /translation="MRFFLSPPHMGGNELKYIEEVFKSNYIAPLGEFVNRFEQSVKDY
                     SKSENALALNSATAALHLALRVAGVKQDDIVLASSFTFIASVAPICYLKAKPVFIDCD
                     ETYNIDVDLLKLAIKECEKKPKALILTHLYGNAAKMDEIVEICKENEIVLIEDAAEAL
                     GSFYKNKALGTFGEFGAYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLH
                     YEHLDYGYNYRLSNVLGAIGVAQMEVLEQRVLKKREIYEWYKEFLGEYFSFLDELENS
                     RSNRWLSTALIDFDKNELNACQKDVNISQKNIALHPKISKLIEDLKNEQIETRPLWKA
                     MHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVCEISKLILKSIKA"
     gene            17015..18787
                     /gene="pglF"
                     /locus_tag="ACHFOB_000434"
     CDS             17015..18787
                     /gene="pglF"
                     /locus_tag="ACHFOB_000434"
                     /EC_number="4.2.1.135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 4,6-dehydratase
                     (configuration-retaining)"
                     /protein_id="HFN5799263.1"
                     /translation="MIFYKSKRLAFFLISDIVLILLSVYLAFSLRFSGDIPSIFYHGM
                     MVSAIILLVLKLSFLFVFRIYKVAWRFFSLNEARKIFIALLLAEFCFFLIFYFFSDFF
                     NPFPRSAIVIDFVLSYMFIGTLRISKRMLVDFKPSRMKEEETPCIVVGATSKALHLLK
                     GAKEGSLGLFPVGVVDARKELIGTYCDKFIVEEKEKIKSYAEQGVKTAIIALRLEQEE
                     LKKLFEELVAYGICDVKIFSFTRNEARDISIEDLLARKPKDLDDSAVAAFLKDKVVLV
                     SGAGGTIGSELCKQCIKFGAKHLIMVDHSEYNLYKINDDLNLYKEKITPILLSILDKQ
                     SLDEVLKTYKPELILHAAAYKHVPLCEQNPHSAVINNILGTKILCDSAKENKVAKFVM
                     ISTDKAVRPTNIMGCTKRVCELYTLSMSDENFEVACVRFGNVLGSSGSVIPKFKAQIA
                     NNEPLTLTHPDIVRYFMLVAEAVQLVLQAGAIAKGGELFVLDMGKPVKIIDLAKKMLL
                     LSNRNDLEIKITGLRKGEKLYEELLIDENDAKTQYESIFVAKNEKVDLNWLNKEIENL
                     QICEDISEALLKIVPEFKHNKEGV"
     gene            18787..19680
                     /gene="pglG"
                     /locus_tag="ACHFOB_000435"
     CDS             18787..19680
                     /gene="pglG"
                     /locus_tag="ACHFOB_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HFN5799264.1"
                     /translation="MYIKDIHRFEDNRYRARAYMSYILTRNLPNKLPDIHLETIKTAL
                     DKIAHEVVVFDALYILDISGMQIENAISLNKAHEIGQDEDRSTRSYFYRAVKLRRCVL
                     SDPYPSVLNNELCVTASMPIYDDKNNLLFVVCIDIKLEDILKIIQAGKFEFVFTQFSR
                     LVYFCFALVLFVITCFLFQKGFFSLFDNQAIGIEHMFESTIAITLALAIFDLAKTLIE
                     QEVLGRTKKEEGGIQKTMVRFLGSIIIALAIEALMLVFKLAIGDLSQMVYAIYLIGGV
                     SLLLLGLSVYLFTVKYKNNNI"
     gene            19793..20185
                     /gene="cheY"
                     /locus_tag="ACHFOB_000436"
     CDS             19793..20185
                     /gene="cheY"
                     /locus_tag="ACHFOB_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis response regulator CheY"
                     /protein_id="HFN5799265.1"
                     /translation="MKLLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKN
                     EDVKVLITDWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNY
                     IVKPFTPQVLKEKLEDVLGTGSGEGAAE"
     gene            20208..21053
                     /gene="prmA"
                     /locus_tag="ACHFOB_000437"
     CDS             20208..21053
                     /gene="prmA"
                     /locus_tag="ACHFOB_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HFN5799266.1"
                     /translation="MQKKYYELFFIVEERYKNLFLDFAFDLGIEAIEEKDNGVYIRSH
                     ESLEDLSWALEIFAQKLTTTFNLNHKIISNLSLVEKENKDWIQEYKKGIKPILVDNVY
                     IHTTWQEEKKNCINIKINPALAFGSGHHESTYSCVKFLQKFSKSKLRALDLGCGSGIL
                     GIIMAKFGCNVEICDTDELAIDSSLENARLNGVDFYKAWCGSIDKANGLYNLIVANII
                     ADVILILEKDIKNHLEDNAILILSGILDKYSTRIKEKFQDLELIDEMQINEWCSFVYK
                     NNKKG"
     gene            21057..22994
                     /gene="ftsH"
                     /locus_tag="ACHFOB_000438"
     CDS             21057..22994
                     /gene="ftsH"
                     /locus_tag="ACHFOB_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HFN5799267.1"
                     /translation="MNNNTPNNKGNLQGNNFFNKNPIFIFAIFAIVMIIIFKGFFDGN
                     GSFGGALNGNEVNKNVPYSELKKLIESGQINQVSIGQTTIKAISSSHNTVYTAKKVND
                     PELVSLLDSKNIAYGAYSETNWFTDILFSWVLPVFIFFGIWMFLASRMQKNMGSSILG
                     IGSSKKLVNSEKPKVKFSDVAGVEEAKEEVKEIVDFLKYPERYIKLGAKIPKGLLLVG
                     PPGTGKTLLAKAVAGEADVPFFSVSGSSFIEMFVGVGASRVRDLFENAKKEAPAIVFI
                     DEIDAIGKSRAASGMMGGNDEREQTLNQLLAEMDGFGTESSPVIVLAATNRPEVLDAA
                     LLRPGRFDRQVLVDKPDFKGRCDILKVHMKDVKISPKVKVEDIARLTAGLAGADLANI
                     INEAALLAGRDSKKYVEQNDLVEAVERAIAGLEKKSRRINEKEKKIVTYHECGHALIA
                     ETTKGAKRVSKVSVIPRGLAALGYTLNTPEENKFLMQKHELIAEVDVLLGGRAAEEVF
                     IGEISTGASNDLERATDIIKAMISMYGMSEIAGLMVLEKQRNTFLSGGQTIKDYSEKM
                     AESLDDYVKKTLDERYKDVKDTLNTYKGAIETMVAALYEEETIEGNKVREIIKEFEDQ
                     NSLPTRLQELEEVKTEVKVEE"
     gene            22991..23608
                     /locus_tag="ACHFOB_000439"
     CDS             22991..23608
                     /locus_tag="ACHFOB_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFN5799268.1"
                     /translation="MKDFIAKDGYLSLIILSLIFIFMWIFYSFSILLLALIVICIFLF
                     RTPKRELVCSDEKAIFAPIDGRVTKIENIHHKDLGECVEITIKNALYDAGNFNTPFAM
                     SIIDIRLRHGLFLCSELKSAKMMNERAFILAKVKENKTIALRIYAGSFDRKLKLDNIS
                     HDLKAGDRMGFLINGSISLLLPKDTRIHIGLNDEIKAGSLLGYFA"
     gene            23618..24346
                     /gene="pssA"
                     /locus_tag="ACHFOB_000440"
     CDS             23618..24346
                     /gene="pssA"
                     /locus_tag="ACHFOB_000440"
                     /EC_number="2.7.8.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003882 - CDP-diacylglycerol-serine
                     O-phosphatidyltransferase activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--serine
                     O-phosphatidyltransferase"
                     /protein_id="HFN5799269.1"
                     /translation="MNNRPQLIYILPNLFTAASAFLGVISIIASIHGNYYTALIYIIL
                     SLICDGLDGRVARLTNSTSKFGVEFDSLADLVAFGVAPAVLFYMAIGYDFGKLGSLIT
                     AFFVVFGAIRLARFNVTTGTYEPSVFIGLPIPTAAVVSAIWTYAFISYDFLKPYGVVF
                     LVLQAILGLLMVSNIRYPSFKKLDFNRSSVLKVLIILIIIFSFLYLCPLESLVILASL
                     YVLYGIIRVLYTIIVSKFKIRNQE"
     gene            complement(24337..>25058)
                     /locus_tag="ACHFOB_000441"
     CDS             complement(24337..>25058)
                     /locus_tag="ACHFOB_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ferritin-like domain-containing protein"
                     /protein_id="HFN5799270.1"
                     /translation="NFYEDFKSRKFIFNHEHQSIFKKNTSQQITLLHPTRIRRPKFLN
                     STHALAKIIHSVAHIEFNAINLALDASYRFKNLPLQFYYDWLEVADEEIKHFKLLNSA
                     LEELGYKYGDFPVHDNLESALEATKDSLSFRMGIVHRGLEAKGLDANPFVVQKLQSSN
                     HSIKNLLMEYLEIILNDEIKHVKKGDTWWKFANQNRYDFIELCKTFKQFSLAGKKLNI
                     QARIKAGFTQKECEVIEKFYS"
BASE COUNT         8459 a         3020 c         4454 g         9125 t
ORIGIN      
        1 attaattttt tttatttttt gccaaaattt ccaaatatcg taaggaagtt ttgtttgaat
       61 aaaaggctta attaaaacta attgttcctt taaatttaaa ggatcttttt taaatttttt
      121 aatcattaaa gcttttttgg catagcaagg taaaaatgtt tcttttatag caagtgcatt
      181 ttcgcttttt tgatctttaa aaaattctat caattttaaa gcagttgtaa ccctgcttgc
      241 tgcttttaaa taattttttg cttccttagc gttttccccg aaagtttcat atatatcttt
      301 aaaatactct gacacatttg cttttgtaat cttcttatca tgatttgata tactgtttgc
      361 tcttaaacgg cataaataca acttttgtga taaaatataa attttattag cactagcaaa
      421 caaaattatc ccaaagtgta tatcttcatt gataataaaa tttataaatt taagtttaat
      481 tttctttaaa aaattaaaat caatcattcc attccatcca aaagaaatat ctctagatcc
      541 tacacttaat gctcgatttg catattcttt tggagtgatt atacattctt ttttaaaatc
      601 aaaaatttcc atccttgttt ttttgtgctt attttttata ttgtcttcat aggtgcaatc
      661 atggtcaaac cacaatacat ccacattttt cattcttata acacattctt ctatgcagtt
      721 taactcccaa taatcatcag aatctaaaaa tataatataa tctatattag gataagtaaa
      781 attagttaaa tctttttcat tattaaaagc ttgagagctt ttatatgctt tatatatatt
      841 ataaggatta ttaccatcca attgaaattc tattaaagaa ttttctttta tatgttgagt
      901 tttgtttttt aatttatact ccccactaaa gtattctata cctacatttc tagctgaact
      961 taaaccccca tttttcttat caaaaagtat aaatctttca tcttttaaag tatattcttt
     1021 ggctatattg agtgagtttt catctgtgct accatcattt acaagtatga tttctaagtt
     1081 agtataagtt tgattgatga cgctgttaaa cattctctca aatattcttc tacgttgtat
     1141 attggtataa ctacacctat tttcttcatg ttttatctcc aagaaatttt tttatttttg
     1201 atggtatcta aataaatttg atgattgctt tcgagcattt ttttgctatt ttcttcatga
     1261 taaatatgat aagcaatagc tttaaatttt aagcgtctaa aaatgccttt attaaataaa
     1321 aatctagcca caaattcact atcttctcta ccccaaccaa taaaattttc attaaaacca
     1381 tcaagttcat caaaatcggc tttaaaaaaa ctcatattgc aggttttact tccctttatt
     1441 atttctttgg tattaaaaaa tttttgatct atttttgaaa ttttatagat aattttggct
     1501 aaaaaagaat ttttatagct tttaaaatct tttttactaa aagctaaact ataatcatca
     1561 ttttttaaga tttcttcgct ttcattttta tttaaaatta ctcttgaacc ttgtaaaatt
     1621 actttgcgtt tcgcaaattc gaaatgattt tttataaagt ctttttctaa aatcatatca
     1681 ccgtcaatta aaattatata ttcactttta gaaactctaa tggcattatt tctatttttt
     1741 gcagcgcgaa aaccctcatc ttcttgccaa atgtgtttta aagagcaagg aaaatctttt
     1801 tgatattctt caataagcct tgctgtatct tctttgctac catcatctgc gattaaaact
     1861 tcattgggta aaaaggttag atttttaaca ctatcaagca ctaatttaag gcgttctttt
     1921 tgattatagg ttgttattat taaagcacaa gtttttggct tttgcttttg aagttcatat
     1981 aatttcatat atttaaaaaa agtccctaag gcattgcaaa cgctgatcgt aaagccttga
     2041 taaccataca aaaagccatt ttttaaaaaa taatttctaa aaaaagtcca aaaagctctt
     2101 aaatttgctt ttaaaacacc acttttttta tgtatatttt gttttgccca aaggcttgag
     2161 tagtactgca ttttattgat taagtgagaa atatctctaa aagcataatg cttcaatcca
     2221 tttttaagat gaattttttt aacattactt ggtaaaacaa ggctttcatg cactaaatta
     2281 tcattaaaac gagtgaaatt tttattaaaa attcttaaaa cataatcagg cgaccaacca
     2341 caagccttta tccattcgcc tttatagaga tttttccgac taagtgcgat gatattatct
     2401 tcttgaagtt ctaaattttt aagctcttta atacactcat tttcaagtac ttcatcagca
     2461 tcaatgctta aaatccaatc attttttgca tagcttaagg caagattttt taaagctcca
     2521 aaacctataa aagcattgtg ataaatatat aaattagcaa aatctttttt aaattcatta
     2581 gctatattta gggtattatc aatgctttca ttgttaagta aaataatttc atcaaaatct
     2641 tttaaagaat ttaaacactc aagcaaagtt tgctcagcat tttttacgat gataataacg
     2701 cttatttgct ttagattcat tttgcaccct tgtaaatttc ctcattataa ctagcaaagc
     2761 gtctatgaaa aaaaaagtat tcccaaggtc tttttttaat catttcttcg caactttgtg
     2821 cttgataaag tgtcagttct tctaaacttg cattttgaga atcttttgct ttaaaaaact
     2881 ctatgcaaaa tttaccacct tctttatagg cataaacagg gatgatcaaa gcattgcttc
     2941 tttgtgcgat aaggcttgct cccatttgat aattcacttc tttgttaaaa aattttaatc
     3001 ttacgctttc gttttctacg cagtcttgat cagttaaaat tcccaaagct ctctcctttt
     3061 ttagagcact tagcatttgt cttataccgc cttttttgtc aataagttct atgtcaaatt
     3121 gggtgcgact ttggcttaaa atttcataca taacttcact ttttaacttt tttcccacta
     3181 tggaaatcgc accatattta gccgcataag caaggcttaa aatttcccag tttccatagt
     3241 gtgcagttgt gaagataata ggacgcttta aagccagggc atctataaga aaattttcat
     3301 tgatgaaatt tactttattg agaatttttt ctttggtggt gttttgattt tgcaaacaat
     3361 caatcccaaa ttgagcaaaa ttttcataaa tttttaaaga caatttatcg cgttcttttt
     3421 gagtgtattg aggaaaacag atttgcaaat ttgtattgat gattttgcgg tgttttttgt
     3481 taagatgaaa agcgattctt gctacaatca aagctaaaaa atgcaagata caatcaggca
     3541 taaaagtaac aaaaaatttc aaaatataat aaagactaag atatattcta tcactatttt
     3601 tcattaagta agcctttggc aagtttgaag atatcttctt cttctatacg cgtgatacaa
     3661 aaatcacttt tatcgatatg cttggcattt tggatttttt tacctgtatc aatgatttta
     3721 ttgatatgag tttgaaaagc attgcggtag cttggtgttg caccaaaaat cgtaatagat
     3781 gctttattta aagcaaaagc taaatgtgtt ggaccgctat catttcctat gataagatcc
     3841 atcatttttg taaaagccat tagctcttca agattaaatt ttggcgctaa ttctatatgt
     3901 gtttcatcaa taccactaag atttaaaacc tctttagcaa attcgtattc ttttacattt
     3961 ccccaagcga gccaaatttt tgtttgttga aattcattga ttaaaagttt gcaaagtata
     4021 gcaagtttgg ttttaggata gattttattt tctacacttg agcccacatg tatgagtatg
     4081 tttttttcgt ttttgtcgag cttgagttta ttgtttaaga gttgttttaa attttcatct
     4141 acgctaaaaa catcttgttt aaaggctaaa tttttggcat taaaatcagt atttaacata
     4201 aaggaggtaa gacttaagta tcttacaaat acattttcat tgtaatctaa ctcaagtttt
     4261 tggttgtaaa aattatgagc aaaactttct ttaaggctat ttttatcaaa accaaaatta
     4321 tttctactta aaattcgact tacaatagca gattttataa gcccttgtag atctattact
     4381 gcattatagt tgttttttct tgctttaaga agaattttta ggctttttaa aatttttttg
     4441 tcttttaagg gtagggcata gagtttgtct attaaaggat ggtttttaag tatgccttca
     4501 aatttttcat ctacaaacca atgaatttct atatcttttt taaaattttt gataaattgc
     4561 aaaaccacgg cactttggat aatatcacca agtgctgaca aacgaacaat tgctattttc
     4621 attaaaagcc taatatttta aaatttttgc tatgatttta gcgaaattat ttaaaaaaag
     4681 gttaaaaatg gcaaaaaatg aaggttatat ttgtgttttt gattgtgaga gtgtgccaga
     4741 tgttgagctt atccgcaaaa ctttgggttt tgaaggaagt gatttagagg taagtttaaa
     4801 agcacttcag tggcaaaaag aacaaagtgg gagtgagttt ttgcctttgc cttatcataa
     4861 aatcattagt atttgtgcgg ttttaagcga taattttgga aaatttatca aagtaaataa
     4921 aattgatggg caaaatgaaa aagaaatgat tgagaatttt ttcaatttta tagaaaatta
     4981 tgagccaaaa ttagtcagct ttaatggtaa aaatttcgat atgcccgttc ttgttttaag
     5041 ggctttaaaa tacaatttaa aggcagcaac ttatttagat actcaaagtg ataaatggaa
     5101 taattataaa acaagatttt cagaattaaa acattgtgat ttattagaat ccttaggatc
     5161 taatgggcgt ggaataaagc ttgatacact ttgctctatg gtgggtttgc caggaaaata
     5221 tgatgtgcat ggcgatgagg tgatgaaact tttttatgaa aatgaacttg aaaaaattta
     5281 cgaatattgt gaaagtgatg ttttaaacac ctatatgctt tttttaaaat atgaacttat
     5341 taaagctaat gttagtgaag aagattatgt tgattttctt tcttatatga gagatttttt
     5401 gcgtgaaaaa aaatcagatc gttcttatac agaagttttt gcaaaagctt gtgagagtga
     5461 aatttcaaaa gttcgatctt aagtatttaa gaaaatatat taaaatttat ttttgacatt
     5521 tttaaaaaaa aggaatgatg atgaaaattc ttattagcgg tggtgcaggt tatataggtt
     5581 ctcatacttt aagacaattt ttaaaaacag atcatgaaat ttgtgtttta gataatcttt
     5641 ccaagggttc taaaatcgca atagaagatt tgcaaaaaat aagagctttt aaattttttg
     5701 aacaagattt aagtgatttt caaggtgtaa aagcattgtt tgagagagaa aaatttgacg
     5761 ctattgtgca ttttgcagcg agtattgaag tttttgaaag tatgcaaaac cctttaaaat
     5821 actatataaa caacactgtt aatacaacaa atctcatcga aacttgtatg caaactggag
     5881 taaataaatt tatattttct tcaacggcgg ccacttatgg cgaaccacaa actcccgttg
     5941 tgagcgaaac aagtccttta gcacctatta atccttatgg gcgtagtaag cttatgagtg
     6001 aagaagtttt gcgtgatgca agtatggcaa atcctgaatt taagcattgt attttaagat
     6061 attttaatgt tgcaggtgct tgtatggatt atactttagg acaacgctat ccaaaagcga
     6121 ctttgcttat aaaagttgca gctgaatgtg ccgcaggaaa acgtgataaa cttttcatat
     6181 ttggcgatga ttatgataca aaagatggta cttgcataag agattttatc catgtagatg
     6241 atatttcaag tgcacattta gcggctttgg attatttaaa agagaatgaa agcaatgttt
     6301 ttaatgtagg ttatggacat ggttttagcg taaaagaagt gattgaagcg atgaaaaaag
     6361 ttagcggagt ggattttaaa gtagaacttg ccccacgccg tgcgggtgat cctagtgtat
     6421 tgatttctga tgcaagtaaa atcagaaatc ttacttcttg gcagcctaaa tatgatgatt
     6481 tagagcttat ttgtaaatct gcttttgatt gggaaaaaca gtgttaaaaa aacttttttt
     6541 tattttaagt aaggaagata aaaatttttt atttttcttg cttgtttttt cagtatttat
     6601 ttcttttata gaaacttttg caatttcttt ggtaatgcct tttatcactt tggctagtga
     6661 tttttcttat tttgatcgta ataaatattt aatcagccta aaagaatatc ttaatatccc
     6721 tgtttttgaa atcattgttt attttggagt ggggcttatt gttttttatg tgtttagagc
     6781 tttgttaaat gcgtattatt ttcatctttt ggcaagattt tctaaagggc gttatcatgc
     6841 gatcgcttat aaggtttttt ctaaattttt aaatattaat tatgaaaaat ttactcaaaa
     6901 aaatcaatct gaaattttaa agtccattac aggggaagtt tataatctaa gcactatgat
     6961 ttcatcattt ttacttttga tgagtgaaat ttttgtagta cttttgcttt atgctttaat
     7021 gcttttgatt aattataaaa tcactttgtt tttaagtatt tttatggtgt taaatgcctt
     7081 tattttagtg aaaattttaa gccctatcat taaaaaagca ggagtaagac gcgaagaagc
     7141 gatgaaaaat ttctttgaaa ttttaaatac aaatttaaat aatttcaaat ttattaagct
     7201 taaaaccaaa gaagatggag tattaagtct ttttaaagcg caaagtgaag ctttttctaa
     7261 agcaaatatt accaacgaaa gcgtagctgc ggtgcctaga atttatcttg aaggaatagg
     7321 cttttgcgta cttgttttta tcgtggtatt tttggttttg aaaaatgaaa gtgatatttc
     7381 aggtatttta tccacgattt ctatttttgt tttagcgctt tatcgcttaa tgccaagtgc
     7441 aaatcgtatt attacaagtt atcatgattt gctttattat cattcttctt tggatattat
     7501 ttatcaaaat ttaagacaag aagaagaaaa tttgggcgag gaaaaattaa gctttaatca
     7561 agagcttaaa atttgcaatc ttagctttgg ttatgaggga aaaaaatatt tatttaaaaa
     7621 tcttaactta aatattaaaa aaggcgaaaa aatcgctttt ataggggaga gtggttgtgg
     7681 aaaaagtacc ttagtagatc ttatcatagg acttttaaaa ccaaaagaag ggcaaatttt
     7741 aattgatgag caagaattaa atgcaaataa tacaaaaaat tatcgccaaa aaataggcta
     7801 tatcccgcaa aatatctatc tttttaatga cagtatagct aaaaatatca cttttggaga
     7861 tgcggttgat gaagaaaaac ttaatagggt tatcaaacaa gcaaatttag agcattttat
     7921 aaaaaattta cctcaaggag tgcaaacaaa agtgggcgat ggggggagta atttaagcgg
     7981 gggacaaaaa caacgcatag ctatagcaag agctttatat ttagagcctg aaatgttagt
     8041 gcttgatgaa gcaacttctg cgcttgatac tcaaagtgaa gcaaaaatta tggatgaaat
     8101 ttataaaatt tctaaagata aaaccatgat tattatcgca catcgccttt ctacgataac
     8161 acaatgtgat aaggtttatc gtttagaaca cggtaagctt aaagaggaga aatgatgaaa
     8221 ataagcttta ttatcgcaac tttaaattca ggaggtgctg agcgtgcttt agtaacctta
     8281 gctaatgcac tttgcaaaga gcatgaagta agtattatta aatttcatgc aggagaatct
     8341 ttttataagc ttgaaaatga agttaaagtt acaagtttgg aacaatttag atttgacacg
     8401 ctttatcata aaatcgcaag tcgttttaag aaattttttg ctttaagaaa ggctttgaaa
     8461 gaaagtaagt ctgatgtttt tatttctttt ttggatacga ctaatattgc ttgtattgct
     8521 gcgaaaatag ggcttaaaac tccactcatt ataagtgagc atagcaatga agcgtattta
     8581 aaacctaaaa tttggcgttt tttaagaagg gtaagctatc ctttttgtga tgctttaagt
     8641 gtgcttggaa gcagtgataa ggtgtattat gaaagatttg taaaaagggt taagctttta
     8701 ttaaaccctt gtcattttag cgatgaaatt tcttttgatt ctagttttga aaaggaaaat
     8761 ttggttcttt ttatagggcg tttagatcac aacaaaaacc ctgtaatgtt tttaaaagct
     8821 atagcgcatt tggataaaaa tttacaagaa aattataaat ttgttatagc aggagatgga
     8881 cagttaagac aagaacttga atacaaggta aaatctttag gaataaaagt tgatttttta
     8941 ggacgcgttg aaaatgtcaa ggctctttat gaaaaagcaa aagtgctttg cctttgttct
     9001 tttgtagagg gtttgccaac ggttttaatt gaaagtttgt attttgaggt ttgtagaatt
     9061 tcaagttctt attataatgg tgctaaggat ttaatcaaag ataatcatga tgggcttttg
     9121 gtaggttgtg atgatgaaat agcacttgct aaaaaacttg aacttgtttt aaatgatgaa
     9181 aattttagaa aagaacttgt aaataatgcc aaacaaaggt gtaaagactt tgaaatttct
     9241 catatcaaag aagaatggct taagcttata gccgaggtta aaaatgccta aactttctgt
     9301 tatagtacca acttttaatc gtcaagtttt gttagaaaag gctattaaaa gcatacaaaa
     9361 tcaagatttt aaagatttag aaattattgt aagcgatgat aattctagcg atgatactaa
     9421 aagtgtggtg caaaatttac aaaaagatga tgatcgcatt aagtattttt taaatcaaaa
     9481 ttacaaacaa ggtccaaatg gcaataaaaa caatggctta gatcaagcaa gtggcgagtt
     9541 tgtaactttt ttagatgatg atgatgagct tttatccggg gctttaagta ccttgatgca
     9601 aaaagcaaat gagggttatg ctcatgtttt tggaaattgt ttgatagaaa aagaaggaaa
     9661 tttaagcaag gaatttagcg gcaagggctt ggaaaaagat agtgaaattt ctaaaaaaga
     9721 ttttttaatg gctaaattta gcggagagtt tttttctgtt tttaaaaaat ccctacttga
     9781 aaataagcgt tttaatgaag aattttatgg caatgaagcc acgctttggg taaatttata
     9841 caaagaaaaa agtttttata tccataaggc ttttaggatt tatagaattt ttaggcaaga
     9901 tagcgtgact ttaggggcga gtaaaaatgc ttatagggtg tatttgggat atttagagct
     9961 tgctaaaatt ttagaaaatg aacttagaat gagtaaggat aaagattata aaaaaacttg
    10021 tgcgagttat tataaaatgg cagcttatta tgcaaaactt gcaaaaaatt ataaagccct
    10081 ttataaatgt ttgtttaaaa gcctaagtat aaaaatcaac gctcctgctt tgatattact
    10141 cattttaagt ataattccaa ataatatgat tgaaaaatta tcaaaaattc gggtggcttt
    10201 atgcaaaaat taggcatttt tatttattct ttaggaagtg gtggtgctga aagagttgtg
    10261 gcgactttat tgcctatttt aagtttgaaa tttgaagtgc atttgatctt gatgaatgat
    10321 aaaatttctt atgaaattcc agagtgtcaa attcattttt tagaatgttc aaaacctagt
    10381 gaaaatccta ttttgaaatt tttaaaacta ccttttttgg ctttaaaata caaaaaactt
    10441 tgcagaaatt taggtattga tacagaattt gtttttttaa atcgacctaa ttatatagct
    10501 ttaatggcaa gaatgtttgg aaacaaaact cgccttgtga tcaatgaatg cactacgcca
    10561 agtgtgatgt atatgaaaaa taattttaat tctttggtaa ataaattttt aatttctttg
    10621 ctttacccaa aagctgattt aatcttgcct aattctaagg gaaatttaga agatttagtg
    10681 caaaatttta gtataagtcc aaaaaaatgt gaaattttat acaatgccat cgatttagaa
    10741 aacatagggc aaaaagccct tgaagacata gctttaaaag ataaatttat tttaagtgta
    10801 ggcaggcttg ataaaggtaa aaatcatgct ttattaattc gtgcttatgc gagattgaaa
    10861 acagatttaa agcttgtgat tttaggtgaa ggtgtgctta aggatgagct tttagctttg
    10921 attaaagaat taaatttgga agaaaaggtt ttgcttttag gatttgataa taatccttat
    10981 aaatacatgg ctaaatgcga attttttgct tttgcttctg tgtttgaagg tttttcaaat
    11041 gttttaatcg aaagtttggc ttgttcttgt gcggtggttt gcactgatca taaaagtggt
    11101 gcaagagagc tttttggcga tgatgaattt ggacttttag tagaagtaga taatgaaaac
    11161 tctatgtttc agggtttaaa aactatgctt gaagacgata aattaagaaa agcgtataaa
    11221 aacaaagcta aaactagggc taaagccttt gataaagtaa aaattgcacg cgatgctttg
    11281 aaatatttat taggataaaa gatgttgaaa aaagagtatt taaaaaaccc ttatttagtt
    11341 ttgtttgcga tgattgtatt agcttatgtt tttagtgtat tttgcaggtt ttattgggtt
    11401 tggtgggcaa gtgagtttaa cgagtatttt ttcaataatc aattaatgat catttcaaac
    11461 gatggctatg cttttgctga gggcgcaaga gatatgatag caggttttca tcagcctaat
    11521 gatttgagtt attatggatc ttctttatct acgcttactt attggcttta taaaatcaca
    11581 cctttttctt ttgaaagtat cattttatat atgagtactt ttttatcttc tttggtggtg
    11641 attcctatta ttttactagc taatgaatac aaacgccctt taatgggctt tgtagctgct
    11701 cttttagcaa gtgtagcaaa cagttattat aatcgcacta tgagtgggta ttatgatacg
    11761 gatatgctgg taattgtttt acctatgttt attttatttt ttatggtaag aatgatttta
    11821 aaaaaagact ttttttcatt gattgccttg ccattattta taggaattta tctttggtgg
    11881 tatccttcaa gttatacttt aaatgtagct ttaattggac tttttttaat ttatacactt
    11941 atttttcata gaaaagaaaa gattttttat atagctgtga ttttgtcttc tcttactctt
    12001 tcaaatatag catggtttta tcaaagtgcc attatagtaa tactttttgc tttatttgct
    12061 ttagagcaaa aacgcttaaa ttttatgatt ataggaattt taggtagtgc aactttgata
    12121 tttttgattt taagtggtgg ggttgatccc atactttatc agcttaaatt ttatattttt
    12181 agaagcgatg aaagtgcgaa tttaacacag ggctttatgt attttaatgt taatcaaacc
    12241 atacaagaag ttgaaaatgt agattttagc gaatttatgc gaagaattag tggtagtgaa
    12301 attgttttct tgttttcttt gtttggtttt gtatggcttt tgagaaaaca taaaagtatg
    12361 attatggctt tacctatatt ggtgcttggg tttttagcct taaaaggagg acttagattt
    12421 accatttatt ctgtacctgt aatggcttta ggatttggtt ttttattgag cgagtttaag
    12481 gctatattgg ttaaaaaata tagccaatta acttcaaatg tttgtattgt ttttgcaact
    12541 attttgactt tggctccagt atttatccat atttacaact ataaagcgcc aacagttttt
    12601 tctcaaaatg aagcatcatt attaaatcaa ttaaaaaata tagccaatag agaagattat
    12661 gtggtaactt ggtgggatta tggttatcct gtgcgttatt atagcgatgt gaaaacttta
    12721 gtagatggtg gaaagcattt aggtaaggat aattttttcc cttctttttc tttaagtaaa
    12781 gatgaacaag ctgcagctaa tatggcaaga cttagtgtag aatatacaga aaaaagcttt
    12841 tatgctccgc aaaatgatat tttaaaatca gacattttac aagccatgat gaaagattat
    12901 aatcaaagca atgtggattt atttctagct tcattatcaa aacctgattt taaaatcgat
    12961 acaccaaaaa ctcgtgatat ttatctttat atgcccgcta gaatgtcttt gattttttct
    13021 acggtggcta gtttttcttt tattaattta gatacaggag ttttggataa accttttacc
    13081 tttagcacag cttatccact tgatgttaaa aatggagaaa tttatcttag caacggagtg
    13141 gttttaagcg atgattttag aagttttaaa ataggtgata atgtggtttc tgtaaatagt
    13201 atcgtagaga ttaattctat taaacaaggt gaatacaaaa tcactccaat cgatgataag
    13261 gctcagtttt atatttttta tttaaaggat agtgctattc cttacgcaca atttatttta
    13321 atggataaaa ccatgtttaa tagtgcttat gtgcaaatgt tttttttggg aaattatgat
    13381 aagaatttat ttgacttggt gattaattct agagatgcta aagtttttaa acttaaaatt
    13441 taagggttga aaatgagaat aggattttta tcacatgcag gagcgagtat ttatcatttt
    13501 agaatgccta ttataaaagc gttaaaagat agaaaagacg aagtttttgt tatagtgccg
    13561 caagatgaat acacgcaaaa acttagagat cttggcttaa aagtaattgt ttatgagttt
    13621 tcaagagcta gtttaaatcc ttttgtggtt ttaaagaatt ttttttatct tgctaaggtt
    13681 ttgaaaaatt taaatcttga ttttattcaa agtgcggcac acaaaagcaa tacttttgga
    13741 attttagcag caaaatgggc aaaaattcct tatcgttttg ccttagtaga aggcttggga
    13801 tctttttata tagatcaagg ttttaaggca aatttagtgc gttttgttat taatagtctt
    13861 tataaattaa gttttaaatt tgcacaccaa tttatttttg tcaatgaaag taatgctgag
    13921 tttatgcgga atttaggact taaagaaaat aaaatttgcg tgataaaatc tgtagggatc
    13981 aatttaaaaa aattttttcc tatttatgta gaatcggaaa aaaaagagct tttttggaaa
    14041 aatttaaaca tagataaaaa acccattgtg cttatgatag caagagcttt atggcataag
    14101 ggtgtaaaag aattttatga aagtgctact atgctaaaag acaaagcaaa ttttgtttta
    14161 gttggtggaa gagatgaaaa tccttcttgt gcaagtttgg agtttttaaa ctctggcgcg
    14221 gtgcattatt tgggtgctag aagtgatata gtcgagcttt tgcaaaattg tgatattttt
    14281 gttttgccaa gctataaaga aggctttcct gtaagtgttt tggaggcaaa agcttgcggt
    14341 aaggctatag tggtgagtga ttgtgaaggt tgtgtggagg ctatttctaa tgcttatgat
    14401 ggactttggg caaaaacaaa aaatgctaaa gatttaagcg aaaaaatttc acttttatta
    14461 gaagatgaaa aattaagatt aaatttagct aaaaatgccg cccaagatgc tttacaatac
    14521 gatgaaaata taatcgcaca gcgttattta aaactttatg atagggtaat taagaatgta
    14581 tgaaaaagtt tttaaaagaa tttttgattt tattttatct ttagtgcttt tagtgctttt
    14641 ttctccggtg attttaatca ctgctttact tttaaaaatc actcaaggaa gtgtgatttt
    14701 tacccaaaat cgtcccgggt tagatgaaaa aatttttaaa atttataaat ttaaaaccat
    14761 gagcgatgaa agagatgaaa agggtgagtt attaagcgat gaattgcgtt tgaaagcttt
    14821 tggaaaaatc gttagaagct taagtttgga tgagcttttg caacttttta atgttttaaa
    14881 aggggatatg agttttgttg gacctagacc tcttttggtt gagtatttgc ctctttacaa
    14941 taaagagcaa aaattgcgtc ataaagtgcg tccaggtata acaggatggg cgcaggtaaa
    15001 tggtagaaat gctatttctt ggcagaaaaa attcgaactt gatgtgtatt atgtgaaaaa
    15061 tatttctttt ttgcttgatt taaaaatcat gtttttaaca gctttaaagg ttttaaaacg
    15121 aagtggggta agcaaagaag gccatgttac aacagagaaa tttaatggca agaactgaaa
    15181 aaatttatat ttatggtgct agtggtcatg ggcttgtttg tgaagatgtg gctaaaaata
    15241 tgggttataa agaatgtatt tttttagatg attttaaagg aatgaaattt gaaagtacct
    15301 tacctaaata tgattttttt atagccatag gaaacaatga aattcgaaaa aagatttatc
    15361 aaaaaatttc agaaaatggc tttaaaattg tcaatcttat ccataaaagc gcgcttataa
    15421 gtcctagcgc aatcgtggaa gaaaatgcag ggattttaat tatgccttat gtagtgatta
    15481 acgctaaagc taaaatagaa aaaggtgtga ttttaaatac ttcaagcgta attgagcatg
    15541 aatgtgtgat aggggaattt tctcatgtga gtgtgggagc taaatgtgcg ggtaatgtaa
    15601 aaattggtaa aaattgtttt ttagggatta attcttgtgt tttgcctaat ttaagtttgg
    15661 cagatgatag tattttaggt ggtggagcaa ctttagttaa aaatcaagat gaaaaaggtg
    15721 tttttgtggg agtacctgca aaaagaaaaa tatgaaatga ttataaaaag atttttgttt
    15781 gattctttgt aaattttttt aggtaaaata gagttaattt ataaaaattt tgttttatac
    15841 aaaggataaa tcatgagatt ttttctttct cctccgcata tgggcggtaa tgaattaaaa
    15901 tatatagaag aagttttcaa aagcaattat atagcacctt tgggtgaatt tgtaaatcgc
    15961 tttgagcaaa gtgtaaaaga ttatagcaaa agtgaaaatg ccttagcttt aaattcagct
    16021 acagcagctt tgcatttagc tttaagggtg gcaggggtaa aacaagatga tattgttttg
    16081 gcttcttctt ttacttttat cgcttcagtg gcgcctattt gttatcttaa agcaaaacct
    16141 gtatttatag attgtgatga aacttataat atcgatgtag atttgttaaa acttgctatt
    16201 aaggaatgtg aaaaaaaacc aaaagcattg attttaactc atctttatgg caatgcggct
    16261 aaaatggatg aaattgttga aatttgcaag gaaaatgaaa ttgttttaat cgaagatgct
    16321 gctgaagctt taggaagttt ttataagaat aaagccttag gaacttttgg agaatttgga
    16381 gcttattctt ataatggcaa taaaattatc accacttcag gtggaggtat gcttatagga
    16441 aaaaataaag aaaagattga aaaagcaaga ttttatagca ctcaagctag ggaaaattgt
    16501 ttgcattatg aacatttaga ttatggttat aattaccgtt taagcaatgt tttaggagct
    16561 attggcgtag cacaaatgga ggttttagaa caaagagtgc ttaaaaaaag agaaatttat
    16621 gagtggtata aagaattttt aggagagtat tttagctttt tagatgaatt agaaaattca
    16681 agaagtaatc gctggttaag tacagctttg attgattttg ataaaaatga acttaatgct
    16741 tgtcaaaaag atgtaaatat tagtcaaaaa aatatcgctt tacatccaaa aatttcaaaa
    16801 ctcatagaag atttgaaaaa tgaacaaata gaaacaagac cattatggaa agctatgcac
    16861 actcaagaag tatttaaagg agctaaggct tatcttaatg gcaatagtga gttatttttc
    16921 caaaaaggaa tttgtttgcc aagtggcacg gcgatgagta aagatgatgt ttgtgaaatt
    16981 tcaaaactga tcttaaagag cataaaggct taaaatgatt ttttataaaa gcaaaagatt
    17041 agcatttttt ttaatttcag atattgtttt aattttactt agcgtttatc tggctttttc
    17101 tttgagattt agtggagata ttccgagcat tttttatcat ggcatgatgg tttctgctat
    17161 tattttgctt gttttaaaac tttcattttt atttgttttt agaatttaca aagtagcttg
    17221 gagatttttt tctctcaatg aagcaagaaa aatttttatc gctttgcttt tagctgagtt
    17281 ttgttttttt cttatttttt atttttttag tgattttttt aatccttttc caagaagtgc
    17341 tattgtgata gattttgttc tttcttatat gtttataggt actttaagaa ttagcaaaag
    17401 aatgcttgtg gattttaaac cttctagaat gaaagaagaa gaaactcctt gtattgtagt
    17461 aggggcaact tctaaggctt tgcatttgtt aaaaggtgca aaagaaggtt ctttagggct
    17521 ttttcctgta ggcgtagttg atgcgagaaa agagcttata gggacttatt gtgataaatt
    17581 tattgtagaa gaaaaagaaa aaataaaatc ttatgcagaa caaggggtaa aaactgccat
    17641 tattgcttta agacttgaac aagaagagct taaaaaactt tttgaagaac ttgtagctta
    17701 tggtatttgc gatgtaaaaa tattttcttt tacaagaaac gaagcaagag atatcagtat
    17761 agaagacttg cttgctagaa aaccaaaaga tttagatgat agtgctgtgg cggctttttt
    17821 aaaagataag gtagttttgg taagtggagc aggtggaact ataggcagtg aactttgtaa
    17881 gcaatgtatt aaatttggtg ctaagcatct tatcatggtt gatcatagtg agtataatct
    17941 ttataagatc aatgatgatt taaatttata taaagaaaaa attactccta ttttactgag
    18001 tattttagat aagcaaagtt tagatgaggt attaaaaact tataaacccg agcttatttt
    18061 acatgcagcc gcttataaac atgtgcctct ttgcgaacaa aatccacatt cagcagtaat
    18121 caataatatt ttaggaacta aaattttatg cgatagtgct aaagaaaaca aagtagctaa
    18181 atttgtgatg ataagtacag ataaagcagt acgaccaaca aatattatgg gttgcactaa
    18241 gagagtttgc gagctttata ctttaagtat gagtgatgaa aattttgaag ttgcttgtgt
    18301 gcgttttggt aatgttttag gttctagtgg tagtgtgata ccgaaattta aagcacaaat
    18361 tgccaataat gagcctttaa ctttaacgca ccctgatata gtgcgttatt ttatgcttgt
    18421 ggctgaggca gtgcaacttg ttttacaagc tggagctatc gcaaaagggg gagaactttt
    18481 tgttttggat atgggtaagc ctgtgaaaat catagattta gctaaaaaaa tgcttttact
    18541 ttctaatcgc aatgatttag aaattaaaat cacaggctta agaaaaggtg agaagcttta
    18601 tgaagagctt ttgattgatg aaaatgatgc taaaacacaa tatgagagta tttttgtagc
    18661 aaagaatgag aaggttgatc ttaattggct taataaagag atagaaaatt tacaaatatg
    18721 tgaagatatt tcagaggctt tattaaagat tgtacctgaa tttaaacaca ataaagaagg
    18781 tgtataatgt atataaaaga tatacataga tttgaagata accgctatcg tgctagagct
    18841 tatatgagtt atattttaac aagaaatctg cccaataaac ttcctgacat tcaccttgaa
    18901 acgattaaaa cagccttgga taaaatagct catgaagttg ttgtttttga tgctttgtat
    18961 attttagata tttcaggcat gcaaatagaa aatgcgattt ccttaaataa ggctcatgaa
    19021 ataggacagg atgaagatag aagtactcgt tcttattttt atagagctgt aaaattaaga
    19081 cgatgtgttt tgagcgatcc ttatccttcg gttttaaata atgagctttg cgtgacagct
    19141 tctatgccaa tttacgatga taaaaataac ttgctttttg ttgtttgtat tgatatcaag
    19201 cttgaagata ttttaaagat tattcaagca ggaaaatttg agtttgtttt tactcaattt
    19261 agtcgtttgg tatatttttg cttcgcactg gttttatttg tgattacttg ttttttattt
    19321 caaaaaggtt tttttagtct ttttgataat caagctatag gtatagaaca tatgtttgaa
    19381 agtaccattg ctataacttt ggctttagct atttttgatt tggcaaaaac tttgatcgaa
    19441 caagaagtat taggaaggac aaaaaaagaa gaaggtggaa ttcaaaaaac tatggtgaga
    19501 tttttgggtt ctattatcat tgctttagct atagaagctt tgatgttggt atttaaactt
    19561 gctattggtg atctttctca gatggtttat gcaatttatc ttattggtgg agtaagctta
    19621 cttcttttgg gtttaagtgt atatttattt acggttaagt ataaaaataa taatatttga
    19681 gtaaaaattt aagtaaaaga tgatataatg ctgtttttta aaatttttta gcttgattaa
    19741 taaggctaaa aagggtaaaa taaaactata aaaactttga aaggacgaaa ttgtgaaatt
    19801 gttagttgtt gatgacagtt ctactatgag aaggattatt aaaaataccc taacaagact
    19861 tggacacgat gatgttttag aagctgagca tggcgttgaa gcttgggatt tattaactaa
    19921 aaatgaagat gtaaaagttt taattacaga ttggaatatg ccagaaatga atggcttgga
    19981 gttggtaaaa aaagtaagag cagagaaaaa atatgaagat atgcctatta tcatggttac
    20041 aactgagggc ggaaaagctg aagtgattac tgctttaaaa gctggcgtaa ataactatat
    20101 tgtaaaacct tttactccac aagttttaaa ggaaaaactt gaagatgttt taggaacagg
    20161 aagtggagaa ggtgcagctg agtaaaggct gatttttaaa attctaaatg caaaaaaaat
    20221 attacgaatt gttctttatc gtagaagagc ggtataaaaa tttatttctt gattttgctt
    20281 ttgatttagg tatagaagcc atagaagaga aagataatgg tgtttacatt agatcccatg
    20341 agagtttaga agatctttca tgggcacttg aaatatttgc tcaaaaactt acaactactt
    20401 tcaatttaaa ccataaaatt atttctaatt taagtcttgt agagaaagaa aacaaggact
    20461 ggatacaaga atataaaaaa ggcataaaac ctattttagt ggataatgtt tacatccata
    20521 ctacttggca agaagaaaag aagaattgta taaatataaa gattaatcca gccttagcct
    20581 ttggctcagg acatcacgaa agcacatatt cttgtgtaaa atttttacaa aaattttcta
    20641 aaagtaaatt aagagcttta gatcttggtt gtggtagtgg aattttgggt attattatgg
    20701 caaagtttgg ttgtaatgtt gaaatttgtg atactgatga gttggctatt gatagttctt
    20761 tagaaaatgc aagattaaat ggtgtcgatt tttacaaggc ttggtgtgga tctatagata
    20821 aagcaaatgg tttatataat ctaattgttg caaatatcat tgcagatgtg attttaattt
    20881 tagaaaaaga tattaaaaac catttagaag ataatgctat acttattttg tcaggaattt
    20941 tagataaata ttcaacaaga attaaagaaa aatttcaaga tttagaactc attgatgaaa
    21001 tgcaaatcaa tgagtggtgt agttttgtat ataaaaataa taaaaaagga taagtaatga
    21061 ataataatac cccaaataat aagggtaatc tgcagggtaa taattttttt aacaaaaatc
    21121 ccatttttat ttttgcgatt tttgcaattg taatgataat tatttttaag ggattttttg
    21181 atggtaatgg ttcttttggc ggggcattga atggcaatga agtaaataaa aatgtccctt
    21241 attctgagtt aaaaaagctt attgaaagtg gacaaatcaa tcaagttagt ataggacaaa
    21301 caacaatcaa agcgatttca agctctcaca atactgttta tacagcaaaa aaagttaatg
    21361 atcctgagct tgtgagttta ctagatagta aaaatatcgc ttatggtgcg tattctgaaa
    21421 caaattggtt tacggatata cttttttcat gggttttgcc agtatttatt ttctttggta
    21481 tttggatgtt tttggcaagt cgtatgcaaa aaaatatggg aagttctata ttgggtatag
    21541 gaagttctaa gaagcttgta aattcagaaa aacctaaagt aaaatttagc gatgtagctg
    21601 gtgttgaaga agctaaagaa gaagtaaaag aaattgtaga ttttttaaag tatcctgaaa
    21661 gatatattaa attgggagct aaaattccaa aagggctttt acttgttggg cctccaggta
    21721 caggaaaaac tttgcttgca aaagcagttg caggtgaagc tgatgtgccg ttttttagtg
    21781 tttcaggttc gtcttttata gaaatgtttg tgggtgtagg tgcttctcgt gtgagagatt
    21841 tgtttgaaaa tgcaaaaaaa gaagctcctg ctattgtttt tatagatgaa atagatgcta
    21901 ttggtaaaag tcgtgcagca agtggcatga tgggtggaaa cgatgaaaga gagcaaactt
    21961 taaatcagct tttggctgaa atggatggct ttgggacaga aagttcccca gtcattgttt
    22021 tagcagcaac aaatcgccca gaagttttag atgcagcgct tttaagacca ggaaggtttg
    22081 atagacaagt tttagttgat aaacctgatt ttaaaggtag gtgtgatatt ttaaaagtgc
    22141 acatgaaaga tgtcaaaata tctccaaaag ttaaagtaga agatatagca cgcttaaccg
    22201 cagggcttgc aggagctgat cttgcaaata ttattaatga agcggcactt ttagcaggta
    22261 gggattctaa aaaatatgta gaacaaaatg atttagttga agctgttgaa agagctatag
    22321 caggacttga gaagaaatca cgtcgtatta atgaaaaaga aaagaaaatt gttacttatc
    22381 atgaatgcgg tcatgccttg attgctgaaa ctaccaaagg tgcaaaacgt gtaagtaagg
    22441 tttctgtgat tccacgtggt cttgcggctt taggttatac tttaaacacc cctgaggaaa
    22501 ataaattttt aatgcaaaaa catgaactta ttgccgaagt agatgtgctt ttgggtggtc
    22561 gtgcggctga agaagtgttc ataggtgaaa tttcaacggg tgcaagtaat gatttagaaa
    22621 gagcaactga tatcataaaa gctatgattt ctatgtatgg tatgagtgaa attgcaggac
    22681 ttatggtgct tgaaaaacaa agaaatactt tcttaagtgg tgggcaaact ataaaagact
    22741 attctgaaaa gatggcagaa tctttagatg attatgtaaa gaaaacctta gatgaacgct
    22801 ataaagatgt taaagatact ttaaatactt ataaaggagc gattgagact atggttgcag
    22861 ccctttatga agaagaaact attgaaggta ataaagtgcg tgagattatt aaagagtttg
    22921 aggatcaaaa tagtctacca actcgtttac aagaactcga agaagttaaa actgaagtta
    22981 aagtagaaga atgaaagatt ttattgcaaa agatggatat ttaagtctta ttattttaag
    23041 cttgattttt atttttatgt ggatttttta ctctttttcc atcttgctat tagcattaat
    23101 tgtaatttgt atttttcttt ttagaacacc taaaagagaa cttgtttgta gtgatgaaaa
    23161 agctattttt gcacctatag atggtagggt tactaaaata gaaaatattc atcataaaga
    23221 tttgggtgaa tgtgttgaaa ttactattaa aaatgctctt tatgatgctg ggaattttaa
    23281 tacacctttt gcaatgtcta taatagatat tcgtttacga catgggcttt ttttgtgcag
    23341 tgaattaaaa tctgcaaaaa tgatgaatga aagagctttt attttggcaa aagttaaaga
    23401 gaataaaacg atagccttgc gaatctatgc aggttctttt gatagaaaat taaagctcga
    23461 taatatttct catgatttaa aagcaggaga tagaatgggt tttttaatca atggctctat
    23521 aagtttactt ttaccaaaag atactagaat tcacataggc ttaaatgatg aaattaaagc
    23581 aggttcattg ttgggctatt ttgcgtaagg aaaaataatg aataacagac cgcaattaat
    23641 ttatatttta cccaatcttt ttacagctgc ttcagctttt ttaggggtta tttctattat
    23701 agcttcaata catggaaatt attatacagc tttgatttat attattttat ctttgatttg
    23761 cgatgggctt gatggccgtg ttgcaagact tacaaattct acttccaaat ttggagtaga
    23821 atttgattct ttagctgatc tagtagcttt tggagttgct ccagcagttc ttttttatat
    23881 ggctataggt tatgattttg gaaaacttgg atctttgatt acagcttttt ttgtggtttt
    23941 tggagctatt cgtttggcga gatttaatgt taccacaggc acttatgaac cttctgtttt
    24001 tataggtctt cctataccta ctgcagcagt tgtaagtgct atatggactt atgcgtttat
    24061 cagttatgat tttttaaagc cttatggcgt agtttttttg gtgcttcaag caattttagg
    24121 gcttttaatg gtaagtaata tacgctatcc tagctttaaa aagcttgatt ttaatcgttc
    24181 tagtgtttta aaagttttga ttattttaat tataatattt tcatttttat atctttgccc
    24241 tcttgaaagt ttagtaattt tagcaagctt gtatgtgctt tatggaatta ttcgggtttt
    24301 atataccatt attgtttcaa aatttaagat aagaaatcaa gagtaaaatt tttcaatgac
    24361 ttcgcattct ttttgagtga agccagcttt gattcttgct tgaatgttaa gtttttttcc
    24421 tgcaagagag aattgtttaa atgttttgca aagctcaata aaatcatacc tgttttgatt
    24481 tgcaaatttc caccaagtat ctcctttttt aacgtgtttt atttcatcat taagtataat
    24541 ttcaagatat tccattaaaa gatttttaat ggaatgattg gaactttgaa gtttttgaac
    24601 aacaaagggg ttggcatcaa gccctttagc ttctaaacct ctatgaacta ttcccattct
    24661 aaagcttaaa gagtcttttg tagcttctag agcagattct aaattatcat gcactggaaa
    24721 atctccatat ttataaccaa gttcttcaag tgctgaattt aaaagtttga aatgtttaat
    24781 ttcctcatct gctacctcca gccaatcgta ataaaattgc aaaggtagat ttttaaagcg
    24841 ataactcgca tctaaagcca ggttaattgc attaaattct atatgagcga ctgaatgaat
    24901 tattttagca agcgcatgag ttgaattgag aaatttaggc cttcttatac gcgtaggatg
    24961 aagcaaggta atttgttgcg atgtattttt tttgaaaatg ctttgatgct cgtgattaaa
    25021 aataaatttg cggcttttaa agtcttcata aaaatttt
//
LOCUS       DAZBIH010000013        24267 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.013, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000013 DAZBIH010000000
VERSION     DAZBIH010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24267
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.013"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(69..1064)
                     /locus_tag="ACHFOB_000442"
     CDS             complement(69..1064)
                     /locus_tag="ACHFOB_000442"
                     /EC_number="3.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004067 - asparaginase activity [Evidence
                     IEA];
                     GO_process: GO:0006528 - asparagine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II asparaginase"
                     /protein_id="HFN5799271.1"
                     /translation="MKKAKSRIAILGTGGTIAGFIDSTIATTGYTAGAIDIDVLIKAV
                     PQIRDLADISWEQIANIDSSNMCDEIWLRLAKKIAKLFAEGIDGVVITHGTDTMEETA
                     YFLNLTIKSDKPVVLVGAMRPSTAISADGPKNLYNAVALVANKEAKNKGVMVAINDKI
                     LSARGVVKTHSLNVDAFSSPDFGDLGYIVDGKVFFYNNVTKAHTKNAPFDVSKLTSLP
                     KVDILYSYSNDGSGVAAKALFEHGTKGIVVAGSGAGSIHKNQKDVLKELLKKGLKVVV
                     SSRVVAGCVAVSDSDEKLGFISAEDLNPQKARVLLMLALTKTSDPKKIQEYFLKY"
     gene            complement(1160..2731)
                     /gene="recJ"
                     /locus_tag="ACHFOB_000443"
     CDS             complement(1160..2731)
                     /gene="recJ"
                     /locus_tag="ACHFOB_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008409 - 5'-3' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HFN5799272.1"
                     /translation="MKIINKNEIKKILASRFEKDLHTKLCDLPLPCCLKDAYKAANRI
                     KEAVEKNEKVAIVGDYDVDGIISCVIMAEFFDDIGFDYIIRIPNRFKDGYGLNAEIIN
                     ELDVNLIITVDNGIAALEAAKLCKEKNIDLIITDHHMPQDILPDAFAIINPKQKDCDF
                     PEIEICGAQVAWYLIAALKEVCKLKYDMCKFLELLAIAIVADMMELRDLNRALVRRGI
                     DHINKSKRAAFRAIKHYYQKDKFALDNIGFLIAPLINSAGRMDDASISYEFLHTKDFN
                     KALEYLEQIVSFNESRKDEEKQLFEDSLNQIDENDSCIVVSGLNWHEGVLGIVASRLA
                     KHFNKPAFVFSQNEEHLKGSARSVGKIDILALISKTNSILSNYGGHKGAAGISLNSEN
                     FEQFKNKIKKECSQISESEFLDTDEILGILEPSEIDFEMLEILESFEPFGHKNPRPFF
                     VLENLCVKNKKLLGKDEKHLKLVLTKENKTIEALFFNFDKEPELNQNISLLGSISKNE
                     FRGMVTPQFVVKEIL"
     gene            complement(2718..4349)
                     /locus_tag="ACHFOB_000444"
     CDS             complement(2718..4349)
                     /locus_tag="ACHFOB_000444"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HFN5799273.1"
                     /translation="MKQTKYIFVTGGVLSSLGKGIAAASIATLLKNSGLKVSILKADP
                     YINVDPGTMSPFEHGEVFVTDDGAETDLDLGHYERFLDESLSQDNNFTTGRVYQSVIE
                     KERRGEYLGKTIQVIPHIVGEIKDRIKKAGEGKDILIVEIGGTVGDIEGLPFLEAIRA
                     LRLEVGKNNAMNIHLTLVPFIKAAGELKTKPTQHSVGELRRIGISPDMIICRSEKALD
                     RDLKDKIAISCGVEKNCVIESVDAASIYQIPLNFLKQDILSPIAEILDLKNLKPNMEN
                     WDSLVKRVIAPSNEVKIAFVGKYVDLKESYKSLTEAIIHAGAALDTKVELKWVDSEKL
                     ENMESSEVFKDVSGILVAGGFGYRGVEGKIKAIQYARENKIPFLGICLGMQLALVEFA
                     RNVLKLKDVNSSEFNEKCQNPVVYLIDEFMDTNGEKQIRTAKTPLGGTMRLGAYKCDI
                     KEKSLLAKVYNEVKSVKERHRHRYEANPKYRADFEKYGLIVSGESKGLIEAVELNCHP
                     FFLAVQFHPEFTSRLEHVNPVICSFIKAAINYEDN"
     gene            4469..5092
                     /gene="thyX"
                     /locus_tag="ACHFOB_000445"
     CDS             4469..5092
                     /gene="thyX"
                     /locus_tag="ACHFOB_000445"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HFN5799274.1"
                     /translation="MQITLLFHTPLSVCSHATRTCWQSFEKGDCGGEKDKELIDRVGN
                     KFKHASTLEHLNYTFYIQGISRACLQEVARHRHTSPSVKSTRYTLKELRNEAEFKIGD
                     FENASRYLVLCGNEEVDNASIKALENLRTILQKSISLDIAKYCLPESYKTELTLTINA
                     RSLQNFISLRSSKSALWEIRNLANALFEALPQEHKFIFEHCLHKDIE"
     gene            5212..6597
                     /locus_tag="ACHFOB_000446"
     CDS             5212..6597
                     /locus_tag="ACHFOB_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HFN5799275.1"
                     /translation="MDKQFFQDFLMLSQAHTIATLAILCVVFYALKKMRDIKINFSLR
                     MLFALLMGLGFGFALQYLANFPDAEEASNILWYSETKHWFAFVSSVFVAFIKMLVVPL
                     VSICIIKVIIEIDKNIKISSLLGISLFWILFSTAIAATLGIFLGYSFDLGSNFAIHEG
                     DKQIREIQTFSNIILGLIPSNIIAAINKENIIAIVIFSFFIGISAKKISKKEEYEQAF
                     KSFHNFILTFYNIMMNMTATVIRFMPYAVVCMMANVLLSNGFEAIKTAGLFIMLIYIA
                     MLIMFGVHFLLLASQGLNPIKYAKKAFPVWLFAFSSRSSLGTLPMTTSTLQNKFGVNS
                     AIANFVASIGTTTGLNGCAGYFPALAAVFVAFATHTHIDFTFALMIVLVAVIGSLGIA
                     GVPGSATMAASIMLAGIGFGNNFVMLSLILAIDPIIDMARTASNVSGAMTSALCTAKN
                     LKALDKEIYNS"
     gene            complement(6636..9005)
                     /locus_tag="ACHFOB_000447"
     CDS             complement(6636..9005)
                     /locus_tag="ACHFOB_000447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HFN5799276.1"
                     /translation="MKVIKRNGRTEELDVSKIKKCTSDAVKDLEGVNLSELELDAKIQ
                     FRDGISTEEIQKTLIKTAVDKIDIDCPNWTFVAARLFLFDLYKKVNGMNRYNHLREYF
                     QKGEKEGRILLGLKEKYDLDDLNAYIKPERDMQFTYLGIKTLYDRYLIKDSKGMPIEL
                     PQQMFMAIAMFLAQNEFNPQEWAKKFYDLISKFELMLATPTLSNARTTRHQLSSCYIG
                     STPDNIEGIFDSYQEMALLSKFGGGIGWDWSKVRAMGGSIDGHKNAAGGIIPFLKITN
                     DIAVAVDQLGTRKGAIAVYIEPWHMDISDFIDLRKNSGEERRRAHELFPALWINDLFM
                     KRVRANDKWTLFDPADTADLCDLYGEAFEKRYEEYEKDESITKEIVEAKELWKKILLN
                     YFETGLPFLCFKDSANRANPNAHVGIIRSSNLCTEIFQNTEPNYYQIKVVFENGDELH
                     FDEEQKVAIDGGYEKPAKKISTLDSIDGNKVYIVEKYKNDGKTAVCNLASINLSKVYT
                     KEDIERVVPTAIRMLDNVIDLNFYPHRKVKDTNLKSRAIGLGVMGEAQMLAEAKIYWG
                     SDEHLNKIDEIMEQISFEAINASSNLALEKGSYEDFEGSNWSKGIFPIDVASPKAKAL
                     TLREGLFDQSECDWVKLREKVKKDGMRNGYLMAIAPTSSISILVGTTQTIEPVYKRKW
                     FEQNLSGMIPVVVPNLSLDTWQYYTPAYELDQKILVKAAAVRGKWIDQGQSLNIFLSL
                     DKASGGYLNEIYQLAWELGVKSTYYLRSESPDSEKVNVADRSIECEGCQ"
     gene            complement(9021..10349)
                     /gene="purB"
                     /locus_tag="ACHFOB_000448"
     CDS             complement(9021..10349)
                     /gene="purB"
                     /locus_tag="ACHFOB_000448"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN5799277.1"
                     /translation="MVERYSREIMAKKWDMQAKYDAWLKVELAAVKAWNKLGLIDDTD
                     CEKILKNAKFDIARIDEIEKTTKHDVIAFLTSVSESLGEESRFVHYAMTSSDCIDTAV
                     ALQIKESLELILEDVSLLLEAIKKRALEHKNTLMVGRSHGIHGEPITFGLVLAIWYDE
                     ISHAKELLEHAKEVISYGKISGAMGNFAHAPLEFEEEVCKNLGLKAAPVSNQVIQRDR
                     YAQVISAIAILASSCEQIAVAIRHFQRTEVYEAEEYFSVGQKGSSAMPHKRNPVLSEN
                     ITGLCRVLRSFVTPALENVALWHERDISHSSVERFILPDAFITADFMLMRLTNLIDKL
                     LVYPENMMKNLNLTGGLVFSGRVLLELPFKGISREEAYKIVQRNAMKVWADLQNGKAA
                     INEKNESLFLLALLSDEDLRKSLSEEDVRKCFDYNYYTKNVDAIFKRTFK"
     gene            10427..11329
                     /locus_tag="ACHFOB_000449"
     CDS             10427..11329
                     /locus_tag="ACHFOB_000449"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HFN5799278.1"
                     /translation="MAYIKIKLSNNGKKAFQVLMENLKISINEAQKLIDKKRLFCDGI
                     LVEEKNKILNGLVELIVYENNPKGVEIVFENEDFAILEKESGILSHPNGRHCKYSLSD
                     EIWHLWGKEACVAHRLDKETSGLILIAKNKKAQIDLKSLFEKKLVQKEYLALAHGKIE
                     ENFIVDKAINLTKNYDDVKTRMQICKEGKQAITEFEILEYFPKINATLLLCKPLTGRQ
                     HQIRVHLHYKNHTILGDPLYGLSKQQIESILDEKLNPKERLKLTGALRLCLHSYRLKF
                     QYKNQNFDINSKINIKEIFNNSIK"
     gene            11441..12319
                     /locus_tag="ACHFOB_000450"
     CDS             11441..12319
                     /locus_tag="ACHFOB_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HFN5799279.1"
                     /translation="MKFVNFIQGQKHNLGVLNSSGKIVSFTDLGIETNDMNEFIIYFD
                     KFKHKLTDLDSKIAYEIPKENYLAPIIEPRQDIICLGINFLDHAKESAKFKGEKFEER
                     EYPVYFGKRCNQATAPFGDIPLHADVTSQLDYECELAFILSKDAYKIKAKDAKDYIFG
                     YTIINEISARELQKRHKQFYRAKSLEGSTIMGPYITSVDEISYPPKLQLQSYVNDELR
                     QNSNTQLFIFDIAYVLEELSAGMLLKAGSIISMGTPSGVGMGLNPPTFLKSGDKVRCV
                     IENLGELCNKIKNINY"
     gene            12382..13296
                     /locus_tag="ACHFOB_000451"
     CDS             12382..13296
                     /locus_tag="ACHFOB_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HFN5799280.1"
                     /translation="MKKIIMILCLSYANIVFAVDMITPIPNSISYDKEKAKLGKSLYM
                     DKSLSKDGKVSCNTCHRLDQHGVDGLEFSIGVDNQLDKPFNTPTTFNSVFNFVQFWNG
                     RAKDLAEQATVPFFNPKEMGLSPELLLQKVNSNENYVKTFKKLYGEVTVENIALAIAE
                     FEKTLITPNSPFDRYLSGDQNAISAQAKKGYEDFKANGCISCHQGQNIGGNMFQKIGI
                     FEEYPNQEDLGRYEITKREADKMVFKVPSLRNIAKTAPYFHDGSIPTLDACVQFMAYY
                     QLGKFLDQETVDNIVAFLESLTGEYHDK"
     gene            13286..15064
                     /locus_tag="ACHFOB_000452"
     CDS             13286..15064
                     /locus_tag="ACHFOB_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN5799281.1"
                     /translation="MTNKKSSFLIKFIILSTLVLAFILVLLGIIFNNYSSSKDNKELI
                     NIVQQLEISDEKINSVFQNSFNFINYDPSVQAIKKMQENFTKLKTFGIDINKAEEIFN
                     AKLIQLNYFKSANSIAVNSKLYLFELAKNYFEELEQNHETNKNNYKTMSSMLSVLSTE
                     NILQKTTLNQLNNLMKEIKNDTKSENLQLFLKHYNMIVKQISIMQDNSSIYENNSLMK
                     ELKQLNTFTQNTIEQSNLFKFYIALAVFGITLVLFVFFILLTLKKVIMPIHTLEKLSA
                     NLASKEANLHSRLNIDPKSELGQSAQYINSFISTVQNSIIEAIENAKSSHQNSQKLKN
                     NSMMLENSSNSQHEQIQGVKEITHVLDDHINLAGNLAQESIENMQDMHILMDKVELTL
                     SELVNLINENNEKEQNIVANMDNLTQSADNIIEITNSIKDIADQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVGQLADKTSKSLLNINATVNTIVQQINDNKALMDLIHDSMKETS
                     SKTNDLQQELVNSMHKLESSIESTQTMKDKSMEVKDKMLILGTNIDKVNELANSVKDL
                     SCEINNISQNVLNGASKLSEKLSSFQ"
     gene            15170..15337
                     /gene="dba"
                     /locus_tag="ACHFOB_000453"
     CDS             15170..15337
                     /gene="dba"
                     /locus_tag="ACHFOB_000453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein Dba"
                     /protein_id="HFN5799282.1"
                     /translation="MEFLELLLVLIALILIIKKPEKENLAFGLVMVAWLLMVFFYVGH
                     KTGALLTIMNL"
     gene            15349..16875
                     /gene="dsbI"
                     /locus_tag="ACHFOB_000454"
     CDS             15349..16875
                     /gene="dsbI"
                     /locus_tag="ACHFOB_000454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="disulfide bond formation protein DsbI"
                     /protein_id="HFN5799283.1"
                     /translation="MNEINKTKNFYTLMCLAGFLIILLPVGIANLIFGYMLGDSPCTL
                     CWGQREAMIFIGVMALFIVRYGMKGKYLAALLIMTAVGLYQSFAHYGNHAHRDLDQGF
                     GLAVFGIHTYFWAEVVFWAVVLLLGVIFAFAPKFNAFEAELNGEKFRKYTKFSFAAVL
                     ISAIIVASNVFQAFVSTGIPPYVGQGDPVRFSLNPKYIIWSKEGWNGLWQNISFLGKR
                     DVKAPDYAFAPASEKLGIKFDNDINNAPFAKINDELKITNEQTINFDKAINTLDYINN
                     EFVASSKWDVAFLDNNFSVKEGFELDPYFSASIDPIIGIIPYMNDKFILMGSNKSFLR
                     FAKNPNASEEDIAKQYADFVKGNDKFKGQGESLGRGRLDTVRAKFNHVASMTTDGNYL
                     YLATVPNNKDAKTFVISKVSLKDRVLSGEFTPKANLKEGKTLGDLYVTSMTFKDGEIY
                     ALSKNHNVIAVIDPVKEEVVKTIAFPSSITNARSIFFKDGKINILSYQDGANKLYTLN
                     "
     gene            complement(16896..17570)
                     /gene="queC"
                     /locus_tag="ACHFOB_000455"
     CDS             complement(16896..17570)
                     /gene="queC"
                     /locus_tag="ACHFOB_000455"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008616 - queuosine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase QueC"
                     /protein_id="HFN5799284.1"
                     /translation="MSKKALCIISGGMDSTLCAYLAKKEGYEIIALHFDYEQRTQEKE
                     KECFKQICKALKVEKSYILDVSFIKDIGGNALTDKSIDIPKNELCISDVPPITYVPFR
                     NGIFLSIAGSLAEKENCESIFIGVVEEDGSGYPDCTDEFIQKAQEFINEGTSKNFKVC
                     IKTPLVRLNKAKIVELALKENVPLELTWSCYESEDEACGECDSCLLRLRGFEKAGFKD
                     KIKYKS"
     gene            17647..18873
                     /locus_tag="ACHFOB_000456"
     CDS             17647..18873
                     /locus_tag="ACHFOB_000456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HFN5799285.1"
                     /translation="MINIKLIEHIFKAASISRWNDYPRMANLVELDKQAHKFIIAYFI
                     AKMEKDVDMRVIIEGGIFEFLSRVVVTDIRPDVYHEIVRQKKAEVNAWVLSKIEPMIE
                     DIEDGEFLKRFEAYLNGNAYAKERLILKAASYFATRWEFNIVYQTSAFLNDIDEIKNK
                     VEEELEDYYELIGARKIALNQKIAKIIDLSGRLRFQKRWAQTPRIPETAVLGHMLVVA
                     ILGYFYSLKIKACDKRLENNFYCALFHDLPESLTRDIISPVKYGIDGLHDIINDYEMK
                     LINERILPFVPEGLRAEFSYILGIREGRNGESNFVKNEFENRTYKNAKIELCSGSLSS
                     FNENEFGAIDGKALKYCDKIAAYIEAGLSISYGVKSKELESGFLGMHEFFKENPTIDG
                     VNFFEICESLREYFKI"
     gene            18965..19361
                     /locus_tag="ACHFOB_000457"
                     /pseudo
     CDS             18965..19361
                     /locus_tag="ACHFOB_000457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343486.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1440 domain-containing protein"
     gene            complement(19373..21049)
                     /gene="ilvD"
                     /locus_tag="ACHFOB_000458"
     CDS             complement(19373..21049)
                     /gene="ilvD"
                     /locus_tag="ACHFOB_000458"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009082 - branched-chain amino acid
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HFN5799286.1"
                     /translation="MRSDAIKKGHLKAPNRSLLRACGLKDEDFDKPFIGVANSYIDII
                     PGHYFLNDYAKIIKDEIRKNGCVPFEFNTIGVDDGIAMGHEGMLYSLPSREIIANSIE
                     TVMNAHQLDALICIPNCDKITPGMLMGALRVNVPTIFVSGGPMASGVTKKGEKISLSS
                     VFEAVGAYEAKKISEEEFKDIECSACPSGGSCSGMFTANSMNTLCEAMGIALEGNGTI
                     LALSKEREELLRKAARRICEIALDERFKIRNIITQKAVRNAMVVDMAMGGSSNTVLHM
                     LAISREAGVALDIKDLNFISSKVAHIAKIAPSLNSVYMDDIHKAGGVSAVMAEISSRQ
                     GHILELDALTITGESLEERLKNAKIKDENIIRKVDNAYSKVGGLAILFGNLAEQGCVI
                     KTAGIIGERKFKGEAVCFNSQDEAIKGIIKGKVKKGNVCVIRYEGPKGGPGMQEMLSP
                     TSLLMGMGLGADVALITDGRFSGATRGLSVGHISPEAAEGGLIGLLKDGDEIEIDVDA
                     YTIHANLSEEEITQRKKEFVLPQKEVPSRWLRMYQKLVSNASKGAVLDME"
     gene            21209..21856
                     /locus_tag="ACHFOB_000459"
     CDS             21209..21856
                     /locus_tag="ACHFOB_000459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ferritin family protein"
                     /protein_id="HFN5799287.1"
                     /translation="MRQYETYKCQKCGNEVEVQNVGGGKLSCCGEEMKCITTDLTAVN
                     LMKAFAGESMARNKYDLFADVAEEEGWHAVARHFREAAENEKWHARAEFKAYHEIVDG
                     KPLEVTTKNLVTAAEGENYEHTTMYPNFAKIAEDEGKKAIARLFTAIGKVEIEHEREY
                     LALKKMLEEEEFFNSEVEELWVCEVCGHIHRGKKAPAACPLCKAPKEYFKREFLG"
     gene            21921..22160
                     /locus_tag="ACHFOB_000460"
     CDS             21921..22160
                     /locus_tag="ACHFOB_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComEA family DNA-binding protein"
                     /protein_id="HFN5799288.1"
                     /translation="MKKLLFLFFALTAFLFGAVNINTATLKELKSLNGIGEAKAKAIL
                     EYRKEANFTSIDDLKKVKGIGDKLFEKIKNDITVE"
     gene            22193..22768
                     /locus_tag="ACHFOB_000461"
     CDS             22193..22768
                     /locus_tag="ACHFOB_000461"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HFN5799289.1"
                     /translation="MKTLFDTKELLNEFDINLIGIDEAGRGALAGPMMMAACKLNKQL
                     DGLCDSKKLSEKKREELYEIIIKNSNYLILAFSSEQIDALGLSTCLKKGLKLIKKHFK
                     TENNFLYDGNTNLGINGIKTQIKADTSILQVSAASILAKVSKDRVMNFLAKDFPCYEF
                     EKNKAYGTKAHKEFIAKFGICKLHRKSFKLL"
     gene            complement(22769..24214)
                     /locus_tag="ACHFOB_000462"
     CDS             complement(22769..24214)
                     /locus_tag="ACHFOB_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HFN5799290.1"
                     /translation="MGNTRGFLDFKRMDFKKIAPKERILNYKEFTIPLDKKEQEIQGG
                     RCMDCGVAFCHTGVMSEGKDVGCPLNNLIPEWSDLIYRSLWEEAYERLDLTNPFPEFT
                     GRVCPAPCEDSCVCAINGTSVSIKNNELSIIENAFKENLVRVNKPKQYNGKKIAIIGS
                     GPAGLACANTLNSLGYKVSVFERSDKIGGLLMYGIPDMKLDKSIVQRRVDLLKKSGIE
                     FKVNENIDNKDKVSKLLKEFDALVLCTGASKPIDLDIEGRKLKGVEFALDFLTQNTKT
                     LLKTGKGADVAKGKNVLVIGSGDTSVDCIAVATRQGAKSIVRFERSPKKPLQRSQNNP
                     WPLKADIFTTDYGLEEAIAVYGKDPREYQKMTKKFLGKTYVEGVEANDLKREFKEGKA
                     INVEIPNSKKTYKVDLVLLAMGFSGCEEAIAKNFGVKLDEKNNISTENFQTTHKKIFA
                     CGDARKGQSLVVWAIKDGIECALSLHQNLAK"
BASE COUNT         8269 a         4297 c         3495 g         8206 t
ORIGIN      
        1 attaatagga ttgaaaggct tgacttaggg aagataagtt ccctaagttt agaaatattt
       61 aaaaaatttt aatattttaa aaaatactct tgaatttttt taggatcact tgtttttgta
      121 agtgctaaca taagcaaaac tcttgctttt tgaggattta aatcttcagc actaataaaa
      181 cctaattttt catctgaatc actcacagca acacaacctg ctacaaccct tgaacttaca
      241 acaaccttaa gccctttttt taaaagctct tttaaaacat ctttttgatt tttgtgtata
      301 cttcctgctc cacttcctgc aacaactatg cccttagttc catgttcaaa taaagctttt
      361 gcagcgacac cactaccatc atttgaatag ctataaagaa tatctacttt tggcaaactt
      421 gtgagtttgc ttacatcaaa aggagcgttt tttgtgtgag ctttagtaac attattatag
      481 aaaaagactt taccatctac tatataaccc aaatccccaa aatcaggaga agagaaagca
      541 tcaacattta aactatgagt ttttactacg cctctagcgc ttaaaatttt atcatttata
      601 gctaccataa cacccttatt cttagcttct ttattggcaa ctaatgctac agcattgtaa
      661 agatttttcg gaccatccgc acttatagca gttgatggac gcatagcgcc aactagaact
      721 acgggcttat cacttttaat ggttaaattt aaaaaataag cagtttcttc catagtatca
      781 gtaccatgag ttatcaccac accgtctatc ccctcagcaa aaagcttagc aattttttta
      841 gcaagcctta accaaatttc atcacacata tttgaactat caatatttgc tatttgctcc
      901 caactaatat ctgctaaatc tctaatttgc ggaactgctt taattaatac atctatatca
      961 atggctccgg ccgtatatcc tgttgtagca atagtgctat caatgaagcc tgctatcgtt
     1021 ccgcctgttc ctaaaatagc aatccttgat ttagcttttt tcatacatac tcctataaaa
     1081 agacgacata taaataattt tttaatctct tgtatattaa ttttttaatg ttattaatgc
     1141 aaattataag taaaaatttt tataaaatct ctttaacaac aaactgtgga gttaccattc
     1201 ccctaaattc attcttagaa atacttccaa gcaaagaaat attttgattc aattctggct
     1261 ctttatcaaa attaaaaaat aaagcttcta tggttttatt ttccttagtt aaaacaagct
     1321 ttaagtgttt ttcatcttta cctagaagtt ttttattttt tacacaaaga ttttctaaaa
     1381 caaaaaaagg tcgtggattt ttatgtccaa aaggttcaaa agattctaaa atttcaagca
     1441 tttcaaaatc aatttcgcta ggttctaaga ttcctaaaat ttcatctgta tccaaaaatt
     1501 cactttcaga aatttgcgaa cattcttttt tgattttatt tttaaattgt tcaaaatttt
     1561 cagagtttaa actgattcca gcagcacctt tatgaccacc ataattgctt aatatagaat
     1621 ttgtcttaga aattaaagct aaaatatcaa tcttgccaac acttcttgcg ctgcctttta
     1681 agtgttcttc attttgagaa aatacaaaag caggtttatt aaaatgttta gctaaacgac
     1741 ttgccacaat ccctaaaaca ccttcatgcc aatttaaacc cgataccaca atacaagaat
     1801 cgttttcatc gatttgattt aaactatctt caaaaagctg tttttcttca tctttacgac
     1861 tttcattaaa actaacaatt tgctctagat attctaaagc tttattaaaa tctttagtgt
     1921 gtaaaaattc ataagaaata cttgcatcat ccattcttcc agcactattt ataagcggag
     1981 caattaaaaa tcctatatta tcaagagcaa atttatcctt ttgataataa tgcttaatag
     2041 cccgaaaagc agccctttta gatttgttaa tatgatctat accacgcctt actaaagcac
     2101 gatttaaatc tctaagttcc atcatatctg caacaattgc aatcgccaaa agttctaaaa
     2161 atttacacat gtcatattta agcttgcaca cctcttttaa agccgctatc aaataccatg
     2221 cgacttgagc tccacaaatt tcaatttctg gaaaatcaca atctttttgc tttggattga
     2281 taatggcaaa agcatcaggt aaaatatctt gaggcatatg atgatcagtg ataatcaaat
     2341 ctatattttt ttctttacag agtttggctg cttcaagagc agctattcca ttatctactg
     2401 ttattattaa atttacatca agttcgttga tgatctcagc atttaatcca tatccatctt
     2461 taaaacgatt cggaattctt ataatataat caaaacctat atcatcgaaa aattctgcca
     2521 taataacaca agaaatgatt ccatcaacat cataatctcc tactatagcg actttctcat
     2581 ttttttctac agcttctttg atgcgattag ctgctttata tgcatccttt aaacagcatg
     2641 gcaaaggcag atcacaaagt ttggtatgca aatctttttc aaagcgtgaa gccaaaattt
     2701 ttttaatttc atttttatta attatcttca tagtttatag ctgccttgat aaaactgcaa
     2761 atcacaggat taacatgctc aagtcttgat gtaaattctg gatgaaactg cacagccaag
     2821 aaaaaaggat gacagttaag ctcaactgct tcaatcaatc ctttgctttc accacttaca
     2881 atcaaaccgt atttttcaaa atctgctcta tattttggat ttgcttcata gcgatgacga
     2941 tggcgttctt ttacactctt tacttcatta taaaccttag ccaaaaggga tttttccttg
     3001 atatcacatt tataagcccc taaacgcata gttccaccta aaggagtttt tgcagtacga
     3061 atttgttttt ctccatttgt atccataaat tcatcaatca aataaaccac aggattttgg
     3121 catttttcat taaattcact tgaatttaca tctttaagtt ttaatacatt tctagcaaat
     3181 tccaccaaag caagctgcat acctaaacaa attcctaaaa aaggaatttt attttctctt
     3241 gcgtattgaa tggcttttat cttaccttct acaccacgat atccaaatcc cccagcaacc
     3301 aaaattccac tcacatcttt aaatacttca gaactttcca tattttcaag tttttcacta
     3361 tctacccatt ttaactccac tttagtatct agggctgcac ctgcatgtat aatagcttca
     3421 gtaaggcttt tataactttc ttttaaatcc acatatttgc ctacaaaagc gattttaact
     3481 tcattgcttg gagctataac tctttttacc aaagagtccc aattttccat attaggtttt
     3541 aaatttttca aatccaaaat ttcagcaata gggcttaaaa tatcttgctt taaaaaatta
     3601 agtggaattt gataaatact agccgcatca acactttcta tcacgcaatt tttttctacc
     3661 ccgcaagaaa tagcaatttt atcttttaaa tctctatcaa gagctttttc actacgacaa
     3721 ataatcatat caggactaat gcctatgcgt cttaactcgc ctacactatg ttgagttggc
     3781 tttgttttta attcccctgc agccttaata aaaggtacta gagtaagatg aatattcata
     3841 gcattatttt tacccacttc caaacgcaaa gcacgaatag cttctaaaaa aggcaagcct
     3901 tctatatccc caacagttcc gcctatttca acgataagta tatctttgcc ttctcctgct
     3961 tttttaatgc gatctttgat ttctcctact atatgaggga taacttgaat ggttttgcca
     4021 agatattctc cacgcctttc tttttcaatc acactttgat aaacccgtcc tgtagtgaag
     4081 ttattatctt gagataaact ctcatccaaa aaacgctcat aatgccccaa atcaagatcc
     4141 gtttctgctc catcatcagt tacaaaaacc tctccatgct caaaaggact catagtgcct
     4201 ggatcaacat tgatataagg atcagctttt aaaatactca ctttaagccc tgaatttttt
     4261 aaaagtgttg cgatagaagc agcggctatc cctttaccca aagaacttaa aactccacct
     4321 gttacaaaaa tatattttgt ttgtttcatt gataataagc cttatttttt tatctaatta
     4381 tagcttgata aaacttttta tttcattaga attttaagta aaaaatgcaa gaattacaaa
     4441 aaatattttt atcaaaaaag gaataagcat gcaaatcact ttactttttc acactccatt
     4501 atctgtttgt tctcatgcaa caagaacttg ttggcaaagc tttgaaaaag gcgattgcgg
     4561 tggcgaaaaa gataaagaac ttatcgatcg cgtgggtaat aaattcaaac acgcttcaac
     4621 cttagaacat ctaaactata ctttttatat acaaggaatt tcaagagctt gcttacaaga
     4681 agttgcaaga caccgtcaca ctagtcctag tgtaaaaagc acgcgttata ccttaaaaga
     4741 acttcgcaat gaagctgaat ttaaaatagg agattttgaa aatgcaagcc gttatcttgt
     4801 gctttgtggt aatgaagagg ttgataacgc aagcattaaa gccttagaaa atttacgcac
     4861 tattttacaa aaaagcatta gtctagatat agccaaatac tgcttaccag aaagctataa
     4921 aaccgaactt acactaacga ttaatgcaag aagtttacaa aattttatat ctttgcgtag
     4981 ttcaaaatca gctctttggg agattagaaa tttagcaaat gctttatttg aagccttacc
     5041 acaagaacac aaatttatat ttgaacattg cctacataaa gatatagaat aaatcatact
     5101 aattttatct tatttaaaat atttttatgc taccatttat aaaatcaagc tttatgcaag
     5161 tatattttca tataccttgt gcttgattat agtttcttat aaggactttt tatggataaa
     5221 caattttttc aagattttct aatgctttca caagctcata ctatagctac tcttgctata
     5281 ctttgtgttg ttttttacgc attaaaaaaa atgcgggata taaaaatcaa tttttctctt
     5341 cgcatgctat ttgcgctttt aatgggtttg gggtttggtt ttgctttgca atatttggca
     5401 aattttccag atgctgaaga agcaagcaat attctttggt atagtgaaac aaaacattgg
     5461 tttgcatttg taagttctgt ttttgtagct tttataaaaa tgctagttgt tcctcttgta
     5521 agcatttgca ttataaaagt aattatagaa attgataaaa atatcaaaat atcttccttg
     5581 cttggaataa gtcttttttg gatactcttt agcacagcca tagctgcaac cttgggtata
     5641 tttttaggtt atagttttga tttaggaagt aattttgcca tacatgaagg agataaacaa
     5701 attcgcgaaa ttcaaacttt ttcaaatatt atactagggc taatacctag caacatcatt
     5761 gcagctatta ataaagaaaa tattatagct attgttattt tttctttttt tataggaatt
     5821 agtgctaaaa aaatttctaa aaaagaagag tatgaacaag cctttaaaag ttttcataat
     5881 tttatcctaa ccttttataa tattatgatg aacatgactg ctacagttat tagatttatg
     5941 ccttatgctg tagtttgtat gatggctaat gtgcttttaa gcaatggttt tgaagctatc
     6001 aaaacagctg gactttttat aatgcttatt tatatagcta tgttaataat gttcggggtg
     6061 cattttttac ttcttgcttc acaagggcta aaccctataa aatatgcaaa aaaagcattt
     6121 cctgtatggt tatttgcatt tagctcaaga tcttctttgg gcactttgcc tatgactact
     6181 tcaactttgc aaaataaatt tggagttaat tcagctatag ctaattttgt agcatctata
     6241 ggtacaacaa caggacttaa tggttgtgcg gggtattttc cagctttagc ggcagttttt
     6301 gtagcttttg ctacacatac acatattgat tttacatttg ctttaatgat agttttggta
     6361 gctgttattg gatccttggg tatagctgga gtacctggaa gtgcaactat ggcagcttct
     6421 attatgctag cagggattgg atttggtaat aattttgtca tgctaagttt gattttagct
     6481 atagatccta ttatagatat ggcaagaaca gcaagtaatg tctcaggagc tatgacttcg
     6541 gcactttgta ctgcaaaaaa tctaaaagcc ctagataaag aaatttacaa ttcttaatct
     6601 cttaaaaccc aatatttttc attgggtttt agtatttatt ggcaaccttc acattctatg
     6661 ctacgatctg caacattgac tttttcacta tcagggcttt cgcttcttag ataataagta
     6721 gattttactc caagctccca agcgagttga taaatttcat ttaaatatcc cccacttgct
     6781 ttatcaagcg ataaaaagat atttaaactc tgcccttgat cgatccattt accacgcaca
     6841 gcagcagcct ttacaagaat tttttgatca agttcgtagg ctggagtata gtattgccaa
     6901 gtatcaaggc ttaaatttgg cacaacaaca ggtatcatac cacttaaatt ttgttcaaac
     6961 cactttcttt tgtaaacagg ttctatagtc tgcgtagtac ccaccaaaat agaaatagaa
     7021 gaagtaggtg caatggccat caaataacca tttctcatac catctttttt aactttttct
     7081 ctaagtttaa cccagtcgca ttcactttga tcaaataagc cctctcttaa agttaaagct
     7141 ttagccttag gacttgctac atcaatagga aaaatcccct tgctccaatt tgatccttca
     7201 aaatcctcat aagaaccttt ttcaagagct aaatttgaac tcgcattaat agcctcaaag
     7261 ctaatttgtt ccataatctc atcgatttta tttaaatgct catcgcttcc ccaataaatc
     7321 ttagcttcag caagcatttg tgcctcaccc atgactccaa gacctatggc gcgagatttt
     7381 aaatttgtat cttttacttt tctatgagga taaaaattta aatctatcac attatcaagc
     7441 atacgaatag ccgttggcac aacacgctct atatcttctt tagtatatac tttgctaaga
     7501 tttatacttg ctagattaca aacggctgtt tttccatcat ttttatattt ttctactata
     7561 taaactttat taccatcaat actatctaaa gttgagattt ttttggctgg tttttcatat
     7621 cccccatcga tcgcaacttt ttgttcttca tcaaaatgaa gttcatctcc attttcaaaa
     7681 actactttaa tttgataata atttggctcg gtattttgaa aaatttcagt acataaattt
     7741 gaacttctaa taattcctac atgagcattt ggatttgctc tattagcact atccttaaaa
     7801 cataaaaatg gcaagcctgt ttcaaaataa tttagcaaaa ttttcttcca aagctcttta
     7861 gcttctacga tttctttggt aatgctttca tctttttcat attcttcata gcgtttttca
     7921 aaagcctcgc catataaatc acataaatct gctgtatctg caggatcaaa aagagtccat
     7981 ttatcattag ctcttactct cttcataaaa agatcattga tccataaagc agggaaaagt
     8041 tcatgagcac ggcgtctttc ttcacctgaa tttttacgca aatcaataaa atcacttata
     8101 tccatgtgcc aaggttctat ataaacagct atagctcctt ttctggttcc tagctgatct
     8161 actgccacgg caatatcatt agtaattttc aagaaaggta taatccctcc tgcggcattt
     8221 ttatgcccat ctatgcttcc acccatagca cgcactttag accaatccca acctataccg
     8281 ccaccaaatt tagaaagcaa agccatttct tggtaagaat caaaaatacc ttcaatatta
     8341 tcaggggttg atcctatata acaagaacta agctgatggc gcgttgttct tgcattagat
     8401 aaagtcggag ttgcaagcat gagttcaaat ttagaaataa gatcgtaaaa tttcttcgcc
     8461 cattcttgag gattaaattc attctgcgct aaaaacatcg caatggccat aaacatttgt
     8521 tgaggaagtt ctataggcat acctttacta tctttaatca agtatctatc atataaagtt
     8581 ttaataccaa gataagtaaa ttgcatatcg cgttcaggtt taatataagc atttaaatca
     8641 tctaaatcat atttttcttt aagaccaagt aaaattcttc cttctttttc acccttttga
     8701 aaatactcac gcaaatgatt atagcgattc ataccattaa cttttttata taaatcaaat
     8761 aaaaaaagtc tagctgcaac aaaggtccaa tttggacaat caatatctat cttatctact
     8821 gcagttttaa ttaaagtttt ttgaatctct tcagttgaaa ttccatcacg aaattgaatc
     8881 tttgcatcaa gttcaagttc gcttaaattc acaccttcta aatcttttac agcatcagag
     8941 gtgcattttt tgatcttaga aacatccaat tcttctgtac gaccatttct tttaataact
     9001 ttcattgcct tccttgcttt ttatttaaat gttcttttaa aaattgcatc aacatttttt
     9061 gtatagtagt tataatcgaa acattttctt acatcctctt cgctcaaact ttttcttaaa
     9121 tcttcatcgc ttaaaagcgc taacaaaaac aaactttcat ttttttcatt gatagcagcc
     9181 ttgccatttt gcaaatctgc ccaaactttc atagcgtttc tttgaactat tttataagct
     9241 tcttcacggc taatgccttt aaatggaagt tctaaaagca ccctccctga aaatacaagc
     9301 ccgcctgtaa gatttaaatt tttcatcata ttttcaggat aaaccaaaag cttatcaatc
     9361 aaatttgtaa gacgcataag cataaaatca gccgtgataa aagcatcagg caaaataaat
     9421 ctttcaacac tagaatgaga tatatctctt tcatgccaaa gtgcaacatt ttccaaagct
     9481 ggagttacaa aagatctaag cacacgacaa agtcctgtga tattttcact taaaacagga
     9541 tttcttttat gtggcatagc tgaacttcct ttttgtccta cactaaaata ctcctcagcc
     9601 tcataaactt cagttctttg aaaatgtctt atggctacag cgatttgctc acaacttgaa
     9661 gctaaaatcg caatagcaga aataacctga gcataacgat ctctttggat cacttgattt
     9721 gaaacaggag cggccttaag acctaaattt ttacaaactt cttcttcaaa ttctaaagga
     9781 gcatgagcaa aatttcccat tgcaccgctg atttttccat agcttatcac ttcttttgca
     9841 tgttctaaaa gctcttttgc atgcgaaatt tcatcatacc aaatagctaa caccaaacca
     9901 aaagtaatag gttctccatg aattccatga cttcttccta ccattaaggt gtttttatgc
     9961 tccaaagcac gctttttgat cgcttctaaa agcaaagaaa catcttctaa aataagctcc
    10021 aaactctctt ttatctgtaa agcaacagct gtatctatac aatcagaact tgtcattgca
    10081 taatgcacaa aacgactctc ttctcccaaa ctttcactta cacttgtaag aaaagctata
    10141 acatcatgtt ttgtggtttt ttctatttcg tctattcttg caatatcaaa ttttgcattt
    10201 ttaagaattt tttcgcagtc tgtgtcatca atgagaccga gtttattcca agcttttaca
    10261 gcggctaatt ctacttttaa ccacgcatcg tattttgctt gcatgtccca ttttttagcc
    10321 atgatttctc tgctatatct ttcaaccatc tttgaaacct ttttagctat aattttatat
    10381 tttaaaaaac agaaattata tcaaattatc ctaagaaagt tattaaatgg cctacataaa
    10441 aataaaactc tcaaacaatg gaaaaaaggc gtttcaagtc cttatggaaa atttaaaaat
    10501 tagcataaat gaagcacaaa aactcataga caaaaaaaga cttttttgtg atggaatttt
    10561 agtagaagaa aagaataaaa ttttaaatgg tttagtagag cttatagtct atgaaaacaa
    10621 tcccaaagga gtagaaattg tctttgaaaa tgaagacttt gccatacttg aaaaagaaag
    10681 tgggatctta agccatccaa atggtagaca ttgcaaatac agtcttagtg atgaaatttg
    10741 gcatctttgg ggaaaagaag cttgcgtagc acacaggctc gataaagaaa cgagcggact
    10801 tatacttata gccaaaaata aaaaagctca aattgatctt aaaagcttgt ttgaaaaaaa
    10861 actagttcaa aaagaatacc ttgctctagc tcatggaaaa atagaagaaa attttatagt
    10921 tgataaagct ataaatttaa ctaaaaacta cgatgatgta aaaacaagaa tgcaaatttg
    10981 caaagaagga aaacaagcta tcactgaatt tgaaatttta gaatactttc ctaaaatcaa
    11041 cgctactctt ttactttgta aacccttaac aggcagacaa catcaaataa gagtgcattt
    11101 acactataaa aatcatacca ttttaggcga tccactttat gggcttagca aacaacaaat
    11161 cgaaagtatt ttagatgaaa aattaaatcc taaagaacgc ttaaaactta caggtgcctt
    11221 gcgtttgtgt ttgcattctt atcgtttgaa atttcaatat aaaaatcaaa attttgatat
    11281 caactcaaaa ataaacataa aagaaatttt caacaattcc ataaaataaa atgatgtttc
    11341 actacgctac aatcaatcac ttttttacca aattttaaaa caaaaaaata attcttgcta
    11401 aaactttaag tataattaaa taaaaaagcg agattttcca atgaaatttg ttaattttat
    11461 acagggtcaa aaacacaatc taggagtact aaattctagt ggaaaaattg taagttttac
    11521 tgatcttggc attgaaacta acgatatgaa tgaatttatt atctattttg ataaatttaa
    11581 acacaagctt acagacttgg attctaaaat agcctatgaa attccaaaag aaaattatct
    11641 agcccctatt atagaacctc gccaagatat tatatgtctt gggattaatt ttttagatca
    11701 tgccaaagaa tctgccaaat ttaagggtga aaaatttgaa gaaagagaat atcctgtata
    11761 ttttggaaaa cgctgcaatc aagctacggc accttttggc gatatacctt tacatgcaga
    11821 tgtaacttct cagcttgatt atgaatgtga gcttgcattt attttaagta aagatgctta
    11881 taaaatcaaa gctaaagatg caaaagatta tatctttggc tatactatta tcaatgaaat
    11941 ttcagctcgc gaacttcaaa aacgccacaa acaattctac cgagcaaaaa gtcttgaagg
    12001 tagcactata atgggacctt atatcacaag cgtagatgaa atttcttatc ctcctaaact
    12061 ccaacttcaa agctatgtca atgatgaact acgccaaaac tctaacactc aattgtttat
    12121 ttttgatatt gcttatgtct tagaagaact tagcgcaggc atgcttttaa aagctggaag
    12181 tattatatct atgggaactc ctagtggagt aggtatgggg ttaaatccac ctactttttt
    12241 aaaatcagga gataaagtac gttgcgtcat agaaaattta ggagaacttt gcaataaaat
    12301 aaaaaatatc aattattaaa caatttacta aaattacact atatggcatt ttaaaaactt
    12361 aaattaaggc agaaatttac catgaaaaaa ataataatga ttttatgttt atcttatgca
    12421 aatatagtct ttgcagtaga tatgataacc cctattccaa attccatctc ttatgataaa
    12481 gaaaaagcta aacttggaaa aagtctttat atggataaaa gtttatccaa agatggaaaa
    12541 gtttcgtgca atacttgcca taggcttgat caacacggcg ttgatggact tgaattttca
    12601 ataggagttg ataatcaact cgataaaccc tttaacactc ctacaacctt taattctgta
    12661 tttaattttg tgcaattttg gaatggtaga gctaaagatt tagcagaaca agctacagta
    12721 ccttttttca atcctaaaga aatggggcta agtcctgaac ttcttttaca aaaagttaat
    12781 tcaaatgaaa attatgtaaa aacttttaaa aaactttatg gagaagttac ggtagaaaac
    12841 atagctcttg caatcgccga atttgaaaaa accttgatca ctccaaattc tccttttgat
    12901 cgctatctta gcggggatca aaatgctatt tcagctcaag ctaaaaaagg ttacgaagat
    12961 tttaaagcta atggctgcat ctcttgtcat caaggtcaaa atataggtgg gaatatgttt
    13021 caaaaaatcg gtatttttga agaataccca aaccaagaag atttagggcg ctatgaaatc
    13081 acaaaaagag aagctgataa aatggtattt aaagttccta gtcttagaaa tatagccaaa
    13141 accgcacctt attttcatga tggatctata cctactttag atgcttgtgt tcagtttatg
    13201 gcttactatc aactaggaaa atttttagat caagaaacag ttgacaatat agttgcattc
    13261 ttagaaagct taacaggaga atatcatgac aaataaaaaa agttcatttt tgataaaatt
    13321 tattatttta tctacactag ttttagcttt cattcttgtt ttattaggta ttatttttaa
    13381 taactattct tcatctaaag ataataaaga attgataaac atagttcaac aactagaaat
    13441 ttcagatgaa aaaatcaatt ctgtttttca aaatagtttt aattttatca actacgatcc
    13501 aagtgttcaa gcaataaaaa aaatgcaaga aaactttaca aaacttaaaa cttttgggat
    13561 tgacataaac aaagcagaag aaatttttaa tgccaaatta atccagctta attattttaa
    13621 atccgcaaat tccatagcag taaattcaaa actttattta tttgaactag ctaaaaatta
    13681 ttttgaagaa ttggaacaaa accatgaaac aaataaaaac aactataaaa caatgagttc
    13741 tatgttaagc gttctttcaa ctgaaaatat tttacaaaaa acaacactaa atcaactcaa
    13801 caatcttatg aaagaaatca aaaatgatac aaaaagtgaa aatttacaac tttttttaaa
    13861 acactataac atgattgtaa agcaaatttc tattatgcaa gataattctt ctatttatga
    13921 gaataattct ctcatgaaag agttaaaaca acttaacact tttacccaaa atactataga
    13981 acaatctaat ttatttaaat tttatatcgc tttagcagta tttggaatta ctcttgtatt
    14041 atttgtattt tttattttat taacactaaa aaaagtcatc atgccaattc atactttaga
    14101 aaaactaagc gctaatttag ctagcaaaga agccaatcta cactctcgtt taaatataga
    14161 tccaaaaagt gagcttggac aaagtgctca atatattaat tcatttattt ccaccgttca
    14221 aaactcaatc atagaagcca tagaaaatgc taaatcaagt catcaaaatt cacaaaaact
    14281 caaaaacaac tctatgatgc ttgaaaacag ctctaattcg caacatgaac aaattcaagg
    14341 agttaaagaa atcactcatg ttttagatga tcatatcaat cttgcgggaa atttagcaca
    14401 agaaagtata gaaaatatgc aagatatgca catactaatg gataaagtag aacttactct
    14461 atctgaactt gtaaatttaa taaatgaaaa caatgaaaaa gaacaaaata tagtagccaa
    14521 tatggacaat ctaacccaaa gtgcggataa tattatagaa atcacaaact ccattaaaga
    14581 catagctgat caaactaatt tacttgccct aaatgcagct attgaagctg caagagcagg
    14641 cgaacatggg cgtggatttg ctgttgtagc cgatgaagtt ggacagcttg ctgataaaac
    14701 aagtaaatct cttttaaaca tcaatgctac tgttaatact atagtccaac aaatcaatga
    14761 caacaaagcc ttaatggatc ttatccatga ttctatgaaa gaaacctctt caaaaaccaa
    14821 tgatttacaa caagaacttg taaattctat gcataaattg gaaagctcta tagaatcaac
    14881 ccaaaccatg aaagataaaa gcatggaagt aaaagataaa atgcttatct taggaacaaa
    14941 tatagataaa gttaacgaac ttgcaaattc tgttaaagat ttatcatgtg aaatcaataa
    15001 tatctctcaa aatgttctaa atggtgcctc taaactctcc gaaaaattaa gtagctttca
    15061 gtaacttttt tcacgttaat ttaacttaac gtgaaatttc aataaaaatt ttatttttaa
    15121 tttatgtttt tcaagtaaaa ttagcagttt ttatttcaaa ggagatacta tggagtttct
    15181 tgaactttta ttagttttaa tcgccttgat actgattatc aaaaaaccag aaaaagaaaa
    15241 tttggctttt ggtttggtaa tggtagcttg gcttttaatg gtttttttct atgttggcca
    15301 caaaacaggc gcactattaa caataatgaa tctgtaagga agggctaaat gaacgaaatc
    15361 aataaaacaa aaaatttcta cacactaatg tgtttagcag gctttttgat tatactcttg
    15421 cctgtaggta ttgcaaattt gatatttggt tatatgttgg gcgatagtcc ttgcacgctt
    15481 tgctggggac aaagagaagc aatgatcttt atcggtgtaa tggcgctttt cattgttcgt
    15541 tatggtatga aaggtaaata ccttgctgct cttttaatca tgacagcagt agggctttat
    15601 caatcttttg ctcactatgg taatcacgct catagagatt tagatcaagg ttttggttta
    15661 gcagtttttg gtatccatac ttatttttgg gctgaagtag tattttgggc tgttgtattg
    15721 ctcttaggtg tgatttttgc ttttgctcct aaatttaatg cttttgaagc tgaactaaat
    15781 ggagaaaagt ttagaaaata tactaaattt agctttgcag cagttttaat cagtgctatc
    15841 atcgtagcat caaatgtttt ccaagccttt gttagcacag gtattcctcc ttatgtagga
    15901 caaggcgatc ctgtaagatt tagtttaaat ccaaaataca tcatttggag taaagaaggt
    15961 tggaatggtt tatggcaaaa tatttctttc ttaggaaaac gcgatgttaa agctcctgat
    16021 tatgcttttg cacctgcaag tgaaaaactt ggcataaaat ttgataatga tatcaacaat
    16081 gctccatttg caaaaatcaa tgatgagctt aaaatcacaa atgaacaaac tataaatttt
    16141 gacaaagcca tcaatactct tgattatatc aataacgaat ttgtagcaag ttctaaatgg
    16201 gatgtagctt tcttagataa taattttagc gttaaagaag gttttgaact tgatccttat
    16261 ttttcagctt ctatcgatcc aatcatcggt atcatacctt atatgaacga taaattcatt
    16321 cttatgggct caaacaaatc tttcttaaga tttgcaaaaa atcctaatgc aagtgaagaa
    16381 gatatcgcta aacaatacgc tgactttgta aaaggcaatg ataaatttaa aggtcaaggc
    16441 gaaagtttag gtcgcggaag acttgatacc gtaagagcaa aatttaacca tgtagcaagt
    16501 atgactacag atggaaatta tctttatctt gcaactgttc caaacaacaa agacgctaaa
    16561 acttttgtaa tctctaaagt ttctttaaaa gatcgtgttc tttcaggaga atttactcca
    16621 aaagcaaatc ttaaagaagg taaaacttta ggcgatcttt atgtaacttc tatgactttt
    16681 aaagatgggg aaatttatgc acttagcaaa aatcacaatg tgattgccgt aattgatcca
    16741 gtcaaagaag aagtagtgaa aactatcgct ttcccaagct ctatcactaa tgctagaagc
    16801 attttcttta aagatggaaa aatcaatatt ctttcttatc aagatggagc aaacaagctt
    16861 tatactttaa actaagcttt aagtcctagt gaaaactagg acttatattt aatcttatct
    16921 ttaaatcctg ctttttcaaa acctcttaaa cgaagcaaac aactatcgca ctccccacaa
    16981 gcttcatctt cactctcata acaagaccaa gtaagttcta aaggtacatt ttcttttaag
    17041 gctagttcta caattttagc tttgtttagt ctaacaagcg gagtttttat acaaactttg
    17101 aaattcttac tcgtaccttc attgataaat tcttgtgcct tttgtataaa ctcatcagta
    17161 cagtcaggat aaccactgcc atcttcttct accaccccta taaaaatact ctcacaattt
    17221 tccttttcag ccaaagatcc tgctatgctt aagaaaattc cattgcgaaa aggcacataa
    17281 gtgataggtg ggacatcgct tatgcaaagc tcatttttag ggatatctat acttttatcg
    17341 gttaaggcat taccccctat atctttgata aaactcacat ctaaaatata agatttttct
    17401 acttttaaag ccttgcaaat ttgcttaaaa cattcttttt ctttttcttg agtgcgttgt
    17461 tcatagtcaa aatgcaaagc gatgatttca taaccttctt ttttggccag ataagcacac
    17521 aaagtactat ccataccgcc acttatgata caaagtgctt ttttactcat ttttatcctt
    17581 aaatttgcta taatttcaca attttaacga aaatttttaa atttaaattg caaaaaaggc
    17641 aaaagcatga taaacataaa actcatagaa cacattttta aagccgcttc tatcagtcgt
    17701 tggaatgatt atccaagaat ggcaaatttg gttgaacttg acaaacaagc tcataaattc
    17761 atcattgcat attttatcgc taaaatggaa aaagatgtgg atatgagagt gattatagaa
    17821 gggggaattt ttgagttttt aagtcgtgtg gtagtaaccg atatacgccc tgatgtgtat
    17881 catgaaatcg tgcgtcaaaa aaaagctgaa gttaatgctt gggttttaag caaaatcgaa
    17941 cctatgatag aagatataga agatggggaa tttctaaagc gttttgaagc gtatttaaac
    18001 ggtaatgctt atgctaaaga aagacttatc ttaaaagcag cttcatattt tgctacaaga
    18061 tgggaattta acatagttta tcaaacctca gcttttttaa atgatattga tgagattaaa
    18121 aacaaagttg aagaagaatt agaagattac tatgaactta taggagctag aaaaatcgct
    18181 ttaaatcaaa aaatagccaa aatcatcgat cttagcggaa gacttcgctt tcaaaagcgt
    18241 tgggctcaaa ctccacgcat accggaaact gctgttttag gacatatgct tgtggtggcg
    18301 attttaggat atttttactc actaaaaatc aaggcttgcg ataaaagact tgagaataat
    18361 ttttattgtg ctttgtttca tgatttgcca gagtctttaa cacgtgatat tatcagccct
    18421 gtaaaatacg gcattgatgg acttcatgat atcataaatg attatgaaat gaaacttatt
    18481 aatgaaagaa ttttaccctt tgtacctgag ggtttaaggg ctgagttttc ttatatttta
    18541 ggcattagag aaggtagaaa cggtgagtca aattttgtaa aaaatgagtt tgaaaatcgc
    18601 acttataaaa atgctaaaat cgagctttgc agcggaagtt taagctcttt taatgaaaat
    18661 gaatttggtg ctatagatgg taaggcgctt aaatactgcg ataaaattgc tgcttatata
    18721 gaagcaggac ttagtataag ttatggtgta aagtctaaag aacttgaaag tggtttttta
    18781 ggaatgcatg agttttttaa agaaaatcct accatagatg gggtgaattt ttttgaaatt
    18841 tgcgaaagtt taagagaata ttttaaaatt taaataagat ttttatactc ctattttcaa
    18901 tatgttttaa ataaaaatat tataaattca aattttattt tgtataaaac ataaaggagt
    18961 tattatgaaa aaatactttc aaaagcgcta tactttagcc ttttttatag gtatattagc
    19021 gggtattttc ggagctattg ttaaatgggg ttgggaagta ccttttcctc caagaaatcc
    19081 caatgttttt tggccagcag atgctttaga acgtgttact ccacctaaaa tttttctaga
    19141 acaactaggc ttacctactg aaaggtgcag tttttggatt ttttgtttat ctttttgccc
    19201 atgttattgt aatgccttta attgcagaag ttccaccact ttgtgaaatt ccttttgatg
    19261 aacacctatc tgaaattttt ggccatattg tttggctgtg gggtatggaa atagttcgta
    19321 gagatataag aaatcgtata accaaagaaa tagaagaatg aaaggaaacc tttcattcca
    19381 tatctaaaac cgcaccttta ctagcattgc taacaagttt ttgatacatt ctaagccatc
    19441 ttgaaggcac ttctttttga ggcaatacaa attctttttt gcgttgagtg atttcttctt
    19501 cgcttaaatt tgcatggatg gtataagcat ctacatcaat ttctatttca tctccatctt
    19561 ttaaaagtcc tataagacca ccttcagctg cttcagggga aatatgaccg acgcttaaac
    19621 cccttgtagc cccactaaaa cgaccatcgg tgattaaagc tacatcagca cccaaaccca
    19681 tacccattaa aagtgaagta ggacttaaca tttcttgcat accagggcca ccttttggac
    19741 cttcatagcg tatcacacaa acatttcctt ttttcacctt gcctttgata atgcctttta
    19801 tagcttcatc ttgagagtta aaacaaacag cttcgccttt aaattttctt tctccgatta
    19861 ttcctgcggt ttttataaca caaccttgct cagctaaatt tccaaacaaa atagcaagtc
    19921 cacctacttt tgagtaagca ttgtctactt tgcgaatgat attttcatct ttgattttag
    19981 cattttttaa gcgttcttcg agactttctc ctgtgatagt cagtgcatca agttctaaaa
    20041 tatgtccttg tctgcttgaa atttcagcca taactgcact cacaccccct gctttatgaa
    20101 tatcatccat ataaacacta tttagcgatg gggctatttt tgctatgtgt gcaactttac
    20161 ttgagatgaa atttaaatct ttaatatcta gtgccacccc tgcttcacgc gaaatggcaa
    20221 gcatgtgtaa aacagtattg ctacttccac ccattgccat atctactacc atagcattac
    20281 gcacggcttt ttgagtgatg atattgcgaa ttttaaaacg ctcatctaag gcgatttcac
    20341 aaatacgacg cgctgctttt cttaaaagct cttctctttc tttgcttaaa gctaagatgg
    20401 ttccattacc ttctagtgct atacccatag cttcgcataa ggtattcata gaatttgctg
    20461 taaacattcc cgagcaagat ccaccacttg gacaggctga acattctata tctttaaatt
    20521 cttcttcgct aatttttttg gcttcataag cccctacggc ttcaaaaaca gagctaagac
    20581 tgatcttttc tccttttttg gttactcctg aagccatagg tccaccactt acaaaaatgg
    20641 ttggaacatt tactcttaaa gctcccatta acataccagg agtgatttta tcgcagtttg
    20701 gaatacagat taaagcatca agttgatgag cattcatcac tgtttcaatg gaatttgcga
    20761 tgatttcacg acttggtaaa gaataaagca taccttcatg tcccatagct ataccatcat
    20821 ctacacctat ggtattaaac tcaaaaggca cacaaccatt tttgcgtatc tcatctttaa
    20881 tgattttagc ataatcattt aaaaaataat gtcctgggat tatgtctata tagctatttg
    20941 ctacacctat aaaaggtttg tcaaaatctt catctttcaa accacaagca cgaagtaaag
    21001 aacgattagg tgcttttaaa tgtccttttt ttatcgcatc gcttctcatt gtaactcctg
    21061 ataataattt tttaaaatta tatttagcaa agcttaattt ttgtgaaatt tattttgata
    21121 tacattttca taaatgataa aaattattaa ttgacaaaaa tattttttta taatacaatg
    21181 ctttttgata atcaaaaaag gagtcaaaat gagacaatat gaaacctata aatgccaaaa
    21241 atgtggtaat gaagtagaag ttcaaaatgt aggtggaggt aagcttagtt gttgtggtga
    21301 agaaatgaaa tgtatcacta cagatttaac tgcagtaaat ttaatgaaag cttttgcagg
    21361 cgaatctatg gcaagaaaca aatacgattt atttgctgat gtggctgaag aagaaggttg
    21421 gcatgcggtt gctagacatt ttagagaagc ggctgaaaat gaaaaatggc atgcaagagc
    21481 agaatttaaa gcttatcatg aaatcgttga tggcaaacct ttagaagtaa ctacaaaaaa
    21541 cctagtaact gctgcagaag gtgaaaacta tgagcacaca actatgtatc caaattttgc
    21601 aaaaatcgct gaagatgaag gcaaaaaggc tatagcgaga ttatttacag ctattggtaa
    21661 agtagaaatc gaacacgaaa gagaatatct agcgcttaaa aaaatgctcg aagaagaaga
    21721 attttttaat agtgaagtag aagaattatg ggtttgtgaa gtatgcggac atatacatcg
    21781 tggcaaaaaa gctccagcag cctgtccttt atgtaaagca ccaaaagagt attttaaacg
    21841 cgaatttttg ggttaagtta agaaattctt atccttttta agataatatt ataattattt
    21901 tttaataaaa ggataagaaa atgaaaaaat tactattttt attttttgct ttaacagctt
    21961 ttctctttgg tgctgtaaat atcaacactg caacactaaa agaattaaaa agtttaaatg
    22021 gtattggcga agctaaggct aaagcgattt tagaataccg caaagaagca aattttacaa
    22081 gtattgatga tcttaaaaaa gttaaaggca taggtgataa gctttttgaa aaaatcaaaa
    22141 atgatatcac agtagaataa aagggcattt ttgcccttct ttttagaaaa atttgaaaac
    22201 tttatttgac acaaaagaac ttttaaacga atttgatata aatttaatcg gtattgatga
    22261 agcaggacgc ggtgctttag caggtcctat gatgatggca gcttgcaaac tgaacaaaca
    22321 acttgatggg ttgtgtgatt ctaaaaaact aagcgaaaaa aaacgcgaag aactttatga
    22381 aatcatcatc aaaaattcaa actatctcat acttgctttt tcttcagaac aaatcgacgc
    22441 actaggctta agcacttgtt taaaaaaagg cttaaaactt ataaaaaagc attttaaaac
    22501 agaaaataac ttcttatatg atggaaacac caacctaggt ataaacggga taaaaacaca
    22561 aatcaaagcc gacactagca ttttgcaagt aagtgcagct agcatactcg caaaagttag
    22621 taaagatagg gtgatgaatt tcttagctaa agactttcct tgttatgaat ttgaaaaaaa
    22681 caaagcctat ggcacaaaag ctcataaaga atttatagct aaatttggaa tttgcaaact
    22741 ccaccgaaaa agttttaaac ttttatgatt attttgctaa attttgatgc aaactcaaag
    22801 cacattctat accatctttt atagcccaaa caactaaaga ttgtcctttt ctagcatctc
    22861 cacaagcaaa gattttttta tgagtggttt ggaaattttc tgtgcttatg ttgtttttct
    22921 catctaattt cactccaaaa tttttagcga tagcttcttc gcacccgcta aaacccatag
    22981 ccaaaagtac taaatccact ttataagttt ttttagaatt tggaatttca acatttatag
    23041 ccttgccttc tttaaactcg cgttttaaat catttgcttc aacgccttct acataagttt
    23101 tccctaaaaa tttctttgtc attttttgat attctctagg atctttgcca tatacagcaa
    23161 tggcttcttc taaaccataa tcagtagtaa aaatgtcagc ttttaaaggc caaggattgt
    23221 tttggcttct ttgcaaaggt ttttttggac ttctttcaaa acgcactata gatttagccc
    23281 cttgtcttgt cgccacagca atacaatcca cacttgtatc cccgcttcct ataaccaaga
    23341 catttttacc tttggctaca tctgcaccct tgcctgtttt taacaaagtt ttggtatttt
    23401 gcgttaaaaa atcaagggca aattcaaccc cttttagctt tctaccttct atatcaagat
    23461 ctataggctt acttgctcct gtgcaaagca ccaaagcatc aaattctttt agaagttttg
    23521 aaaccttatc tttgttgtct atattttcat tcactttaaa ttcaatccca ctttttttaa
    23581 gcaaatccac ccgtctttga actatacttt tatcaagctt catatcaggg ataccataca
    23641 tcaaaagtcc gcctatttta tcgcttcttt caaaaacact tactttataa cctagtgaat
    23701 ttaaagtatt agcacaagca agcccagcag gcccacttcc tatgatagcg atttttttac
    23761 cattgtattg cttaggttta tttactctta ctaaattttc tttaaaagca ttttctataa
    23821 tggataattc attatttttg atactcacac ttgtgccatt tatcgcacac acacaagaat
    23881 cctcacaagg agcagggcaa acacggccag taaattcagg aaaaggattg gtaagatcaa
    23941 gtctttcata agcttcttcc cataaagaac gataaataag atcgctccat tcaggaatga
    24001 gattgtttaa aggacagccc acatcttttc cttcgctcat cacacccgta tgacaaaagg
    24061 ccacaccaca atccatacaa cgcccgcctt gaatttcttg ttctttttta tccaaaggta
    24121 tagtaaattc tttgtaattt aaaatccttt ctttaggagc aattttttta aaatccattc
    24181 ttttaaagtc caaaaaacct cttgtatttc ccatttttta ctccttattt ttgtgtgatt
    24241 ttcaaaaaat ctacaaaaaa ttttcta
//
LOCUS       DAZBIH010000014        24184 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.014, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000014 DAZBIH010000000
VERSION     DAZBIH010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 24184)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24184)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24184
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.014"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..952)
                     /gene="mnmH"
                     /locus_tag="ACHFOB_000463"
     CDS             complement(<1..952)
                     /gene="mnmH"
                     /locus_tag="ACHFOB_000463"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-selenouridine(34) synthase MnmH"
                     /protein_id="HFN5799291.1"
                     /translation="MLSEVEFAEFQKENFSLLIDARSPREFLHSHLIGALNFYALNDE
                     EYQEIGTIYKKNQALAKARGASYICQNTAKHILKITQNFRIGEKVGIYCSRGGLRSKS
                     IAVILSELGFRVVRLKGGFKAYRTFVTHYFENEINFDFFTLCGNTGCGKTELLEQLPQ
                     AINLEKIANHLGSSFGDILGKQPTQKAFEAELFHNMQNLENFAFIESESRKIGDIILP
                     LKFYEKMQKAFKIYCFCSLENRVKRIQKIYQEKMTPLKFQQCVQKISPYISLNLRQDL
                     LQSYERKEWQKLIVMLLEYYDKTYKKPDKIDLELNTDDILK"
     gene            complement(942..1427)
                     /locus_tag="ACHFOB_000464"
     CDS             complement(942..1427)
                     /locus_tag="ACHFOB_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HFN5799292.1"
                     /translation="MQYLYAPWRSEYFEKEKSVCPFCDCANKIKSDEDLGVIFRAKHC
                     FGVMNRYPYSAGHFMVIPYVHEEHIENLSDEIWQEMSHFVRLGVKILKEQIHANGVNI
                     GMNLSKDAGAGIAFHCHYHLVPRWAGDTNFITTIGETRVCGTNIEQVYQKLVLAFKNA
                     Q"
     gene            complement(1437..2213)
                     /gene="trpC"
                     /locus_tag="ACHFOB_000465"
     CDS             complement(1437..2213)
                     /gene="trpC"
                     /locus_tag="ACHFOB_000465"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HFN5799293.1"
                     /translation="MILDKIFEKTKEDLKERKLKLPYDMLGRSLASNPFFPKDVIKAL
                     KRVEKEVKIIAEVKKASPSKGVIREDFDPLSIALNYEKNKATAISVLTEPHFFKGSLE
                     YLSLIRRYTQIPLLRKDFIFDEYQILEALVYGADFVLLIAKMLSMKELKKLLEFARHL
                     GLEALVEIHDKEDLSKAIFAGADIIGINHRNLEDFTMDMSLCEKLIPQIPNSKIIIAE
                     SGLENKEFLEHLQNLGVDAFLIGEYFMREEDEGKALKALL"
     gene            complement(2210..3487)
                     /locus_tag="ACHFOB_000466"
     CDS             complement(2210..3487)
                     /locus_tag="ACHFOB_000466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN5799294.1"
                     /translation="MYRYLLFVLAAFFLVACGSSKINVVYPDYTKYKSNDFDLRVMKA
                     YNYEYYKQYKEARDEFLSLYQDYNNTNFLENAFLLTLANNLDRQAELNNLAKPYLNQN
                     DNLKRLSALYALNSNDINNAQKLMKELLVKKDSDPRNLELYGDILVKKNDLKNATKYY
                     RSAYNQVQNEEILFKLIGIYAILNDTLNIKNVLEFSRKTNGCTLKTCVLLAKIYFDEK
                     NIEALKSIYKELYQLTKNKSFALALVELLNSQGKTEEALKISLQYDLDDDIKFALYQN
                     LKRFDDAKKMSLALYHKTKNKEYLLRAAVFEFEAANEAKKITPKVIDSVKEKFEQAID
                     KDSNALYLNYYGYLLIDYDLDVKKGIELVKLALEKDPQNLYYLDSLAWGYYKLGDCRQ
                     AWEILKQTLDDKEFANSDESKAHIKAIKACVKP"
     gene            complement(3460..3834)
                     /locus_tag="ACHFOB_000467"
     CDS             complement(3460..3834)
                     /locus_tag="ACHFOB_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HFN5799295.1"
                     /translation="MIFDKNFSYAFDENACEKCGGKCCTGESGNIFASKEELEALRKH
                     LKLESKEFAEKYLRKVGFKMSFKEVEFEDGFACIFFDTQKRNCSIYDFRPKQCRTFPF
                     WEYFKTHQKELEKECIGICYLS"
     gene            complement(3824..4525)
                     /locus_tag="ACHFOB_000468"
     CDS             complement(3824..4525)
                     /locus_tag="ACHFOB_000468"
                     /EC_number="2.1.1.223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016430 - tRNA
                     (adenine-N6)-methyltransferase activity [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HFN5799296.1"
                     /translation="MSDLITLAQLSQGYRYNSDSLILADFILKQGIKGAVFDVGAGCG
                     IIGILLKKNIANLSLSLIDIQKENIKLIEKNLKSNQIQGDIFYDDFNQFQSIKKFDFI
                     VCNPPFYRQGAYKSEDQHKAISKFQEFLPLHSFLTKANSMLKPNGTLYFCYEALALDE
                     ICFILKDMKMKITKLCFVHTHQNKKARLVLIQVKKGSKSPCEILPPFFVYENEILSKQ
                     MQEIHLRFRLKSYDI"
     gene            complement(4531..4680)
                     /locus_tag="ACHFOB_000469"
     CDS             complement(4531..4680)
                     /locus_tag="ACHFOB_000469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799297.1"
                     /translation="MIKIAFFIIFVISFLTAQSPVNFKEDNNITKEQNIFKEQPPKRI
                     KIPTH"
     gene            complement(4698..4774)
                     /locus_tag="ACHFOB_000470"
     tRNA            complement(4698..4774)
                     /locus_tag="ACHFOB_000470"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4738..4740),aa:Arg,seq:cct)
     gene            complement(4803..6878)
                     /gene="fusA"
                     /locus_tag="ACHFOB_000471"
     CDS             complement(4803..6878)
                     /gene="fusA"
                     /locus_tag="ACHFOB_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HFN5799298.1"
                     /translation="MSRSTPLKKVRNIGIAAHIDAGKTTTSERILFFTGMSHKIGEVH
                     DGAATMDWMEQEKERGITITSAATTCFWKDHQINLIDTPGHVDFTIEVERSMRVLDGA
                     VAVFCSVGGVQPQSETVWRQANKYGVPRIVFVNKMDRIGANFYNVEDQIRNRLKANPV
                     PLQIPIGAEDNFKGVIDLVTMKALVWEDDTKPTDYVEKEIPAELKEKAEEYRTKMIEA
                     VSETSDELMEKYLGGEELSLEEIKTGIKAGCLSLSIVPMLCGTAFKNKGVQPLLDAVV
                     AYLPAPDEVPNIKGEYEDGTEVSVKSTDDGEFAGLAFKIMTDPFVGQLTFVRVYRGCL
                     ESGSYAYNSTKDKKERIGRLLKMHSNKREEIKVLYAGEIGAVVGLKDTLTGDTLASEK
                     DKVILERMDFPDPVISVAVEPKTKADQEKMSIALNKLAQEDPSFRVSTDEESGQTIIS
                     GMGELHLEIIVDRMLREFKVEAEVGQPQVAYRETIRKTVEQEYKYAKQSGGRGQYGHV
                     FLRLEPLEPGSGYEFVNDIKGGVIPKEYIPAVDKGVQEALQNGVLAGYPVEDVKVTVY
                     DGSYHEVDSSEMAFKLAASMGFKEGARKAGAVILEPMMKVEVETPEDYMGDVIGDLNK
                     RRGQVNSMDERGGNKIITAFCPLAEMFGYSTDLRSQTQGRATYSMEFDHYDEVPKNVA
                     DEIIKKRNG"
     gene            complement(6891..7361)
                     /gene="rpsG"
                     /locus_tag="ACHFOB_000472"
     CDS             complement(6891..7361)
                     /gene="rpsG"
                     /locus_tag="ACHFOB_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HFN5799299.1"
                     /translation="MRRRKAPVREVLPDPIYGNKVITKFINSLMYDGKKSTATTIMYG
                     ALEAIDKKGGEKKGIDIFNDAIENIKPLLEVKSRRVGGATYQVPVEVRPARQQALAIR
                     WIISFARKRSERTMIDKLAAELLDAANSKGASFKKKEDTYKMAEANKAFAHYRW"
     gene            complement(7431..7817)
                     /gene="rpsL"
                     /locus_tag="ACHFOB_000473"
     CDS             complement(7431..7817)
                     /gene="rpsL"
                     /locus_tag="ACHFOB_000473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HFN5799300.1"
                     /translation="MPTINQLVRKERKKVLEKSKSPALKNCPQRRGVCTRVYTTTPKK
                     PNSALRKVAKVRLTSGFEVISYIGGEGHNLQEHSIVLVRGGRVKDLPGVKYHIVRGAL
                     DTAGVAKRTVSRSKYGAKRPKAGAAK"
     gene            complement(7937..12490)
                     /gene="rpoC"
                     /locus_tag="ACHFOB_000474"
     CDS             complement(7937..12490)
                     /gene="rpoC"
                     /locus_tag="ACHFOB_000474"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HFN5799301.1"
                     /translation="MSKFKVIEIKEDARPRDFEAFQLRLASPEKIKSWSYGEVKKPET
                     INYRTLKPERDGLFCAKIFGPIRDYECLCGKYKKMRFKGVKCEKCGVEVANSKVRRSR
                     MGHIELVTPVAHIWYVNSLPSRIGTLLGVKMKDLERVLYYEAYIVENPGDAFYDNEST
                     KKVEYCDVLNEEQYQNLMQRYENSGFKARMGGEVVRDLLANLDLVALLNQLKEEMAAT
                     NSEAKKKTIIKRLKVVENFLNSNLNANTDSDEAVPNRPEWMMITNLPVLPPDLRPLVA
                     LDGGKFAVSDVNDLYRRVINRNTRLKKLMELDAPEIIIRNEKRMLQEAVDALFDNGRR
                     ANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFSGRSVIVVGPKLRMDQCGLPK
                     KMALELFKPHLLAKLEEKGYATTVKQAKKMIENKTNEVWECLEEVVKGHPVMLNRAPT
                     LHKLSIQAFHPVLVEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSQEAIAECKVLMLS
                     SMNILLPASGKSVTVPSQDMVLGIYYLSLEKAGAKGSHKICTGIDEVMMALESKCLDI
                     HASIQTMVDGRKITTTAGRLIIKSILPDFVPENSWNKVLKKKDIAALVDYVYKQGGLE
                     ITASFLDRLKNLGFEYATKAGISISIADIIVPNDKQKAIDEAKKQVREIQNSYNLGLI
                     TSGERYNKIIDIWKSTNNVLSKEMMKLVEKDKEGFNSIYMMADSGARGSAAQISQLAA
                     MRGLMTKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKTANAGYLTRKL
                     IDVAQNVKITIEDCGTHEGVEINEITADSSIIETLEERILGRVLAEDVIDPITNSVLF
                     AEGTLMDEEKAKILGESGIKSVNIRTPITCKAKKGICAKCYGINLGEGKLVKPGEAVG
                     IVSAQSIGEPGTQLTLRTFHSGGTASTDLQDRQVSAQKEGFIRFYNLKTYKNKEGKNI
                     VANRRNAAILLVEPKIKTPFKGVINIENIHEDVIVSIKDKKQEVKYILRKYDLAKPNE
                     LAGVSGSIDGKLYLPYQSGMQVEENESIVEVIKEGWNVLNRIPFASEILVEDGEPVVQ
                     NIKAGEKGTLKFYILKGDGLDRVKNVKKGDIVKEKGFFVVIADENDREAKRHYIPRES
                     KIEFNDSEKIDDANTIIASAPKKERKVIAEWDAYNNTIIAEIDGVVSFEDIEAGYSAD
                     EQIDEATGKRSLVINEYLPSGVRPTLVIAGKGDKAVRYQLEPKTVIFVHDGDKIAQAD
                     ILAKTPKAAAKSKDITGGLPRVSELFEARKPKNAAVIAEIDGVVRFDKPLRSKERIII
                     QAEDGTSAEYLIDKSKHIQVRDGEFIHAGEKLTDGVVSSHDVLKILGEKALHYYLISE
                     IQQVYRGQGVVISDKHIEVIVSQMLRQVKVVDSGHTKFIEGDLVSRRKFREENERIIR
                     MGGEPAIAEPVLLGVTRAAIGSDSVISAASFQETTKVLTEASIAGKFDYLEDLKENVI
                     LGRMIPVGTGLYGEQNLKLKEQE"
     gene            complement(12483..16619)
                     /gene="rpoB"
                     /locus_tag="ACHFOB_000475"
     CDS             complement(12483..16619)
                     /gene="rpoB"
                     /locus_tag="ACHFOB_000475"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HFN5799302.1"
                     /translation="MCDMLDNKLGNRLRVDFSNISKQIEIPNLLQLQKKSFDYFLNLD
                     NGESGIEKVFKSIFPIHDPQNRLSLEYVSSEIGKPKYTIRECMERGLTYSVNLKMKIR
                     LTLHEKDEKTGEKVGVKDIKEQEIYIREIPLMTDRVSFIINGVERVVVNQLHRSPGVI
                     FKEEESSTVANKLVYTAQIIPDRGSWLYFEYDAKDVLYVRINKRRKVPVTMLFRALGY
                     KKQDIIKLFYPIQTIHVKKDKFLTEFNPNDFMDRIEYDIKDEKGKIVHQAGKRLTKKK
                     AEQLIKDGLKWIEYPVEILLNRYLANPIIDKESGEVLFDSLTLLDESKLAKIKEQKSF
                     DIANDLANGVDAAIINSFAQDGETLKLLKQSENIDDENDLAAIRIYKVMRPGEPVVKD
                     AAKAFVNDLFFNPERYDLTKVGRMKMNHKLGLEVPEYVTVLTNEDIIKTAKYLIKVKN
                     GKGHIDDRDHLGNRRIRSIGELLANELHLGLAKMQKAIRDKFTSLNADLDKVMPYDLI
                     NPKMITTTIIEFFTGGQLSQFMDQTNPLSEVTHKRRLSALGEGGLVKERAGFEVRDVH
                     ATHYGRICPVETPEGQNIGLINTLSTYAKVNELGFVEAPYRKVVNGKVTNEVVYLTAT
                     QEEGLFIAPASTKVDAKGNIVEEFVEARQDGETILARREEVQLIDLCSGMVVGVAASL
                     IPFLEHDDANRALMGSNMQRQAVPLLTASAPIVGTGMEQIIARDAWEAVKAKRGGVVE
                     KVDNKSIFILGEDDKGPFIDHYTMEKNLRTNQNTNYIQHPIVKKGDIVKAGQIIADGP
                     SMDQGELAIGKNALIAFMPWNGYNYEDAIVVSERIIREDTFTSVHIYEKEIEARELKD
                     GIEEITKDIPNVKEEDVAHLDESGIAKIGTHIKPGMILVGKVSPKGEVKPTPEERLLR
                     AIFGEKAGHVVNKSLYATASLEGVVVDVKIFTKKGYEKDDRAIKSYDKEKMALEKEHH
                     DRLLMMDREEMLRVCALLSKAPLNSDQKIGDKNYKKGQTADISELEKINRFTLTTLIK
                     AYSKEIQKEYDDLKNHFQNEKKKLKAEHDEKLEILEKDDILPSGVIKLVKVYIATKRK
                     LKVGDKMAGRHGNKGIVSTIVPEVDMPYLPNGKSVDIALNPLGVPSRMNIGQILESHL
                     GLIGLRLGDQIQEIFDRRQKDFLKELRAKMLEICSIPRLASEKEFIKSLSDEELLNYA
                     RDWSKGVKFATPVFEGVNIEEFSKLFEMAKIDMDGKTELYDGRTGEKIAERVHVGCMY
                     MLKLHHLVDEKVHARSTGPYSLVTQQPVGGKALFGGQRFGEMEVWALEAYGAAHTLRE
                     MLTIKSDDVEGRFSAYKALTKGENVPATGIPETFFVLTNELKSLALDVEIFDKDEDNE
                     "
     gene            complement(16729..17106)
                     /gene="rplL"
                     /locus_tag="ACHFOB_000476"
     CDS             complement(16729..17106)
                     /gene="rplL"
                     /locus_tag="ACHFOB_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HFN5799303.1"
                     /translation="MAISKEDVLEYISNLSVLELSELVKEFEEKFGVSAAPVMVAGGA
                     AAGGAAAAAEEKTEFDIVLTDGGAKKIEVIKIVRALTGLGLKEAKDAVEQTPSTLKEG
                     VAKAEAEEAKKQLEEAGAKVELK"
     gene            complement(17127..17606)
                     /gene="rplJ"
                     /locus_tag="ACHFOB_000477"
     CDS             complement(17127..17606)
                     /gene="rplJ"
                     /locus_tag="ACHFOB_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HFN5799304.1"
                     /translation="MTRSEKVEIIAKLEEGFKASEAIVVCNYRGLSTKKLEELRNNAR
                     ENNVKVQIVKNTLANIALNNSGKTGLVLKDTNIYLWGEDQLSVSKVAAKFEENNDKFE
                     IKTAHIEGEVADVAKVKALAKMPSRNELLAMLLQVWNAPITNFTIGLNALKNKKESE"
     gene            complement(17758..18459)
                     /gene="rplA"
                     /locus_tag="ACHFOB_000478"
     CDS             complement(17758..18459)
                     /gene="rplA"
                     /locus_tag="ACHFOB_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HFN5799305.1"
                     /translation="MAKIAKRLKELSQKIDSNKEYALSDAIDTIKTLKSAKFDETVEI
                     ALKLNVDPRHADQMVRGSVVLPAGTGKKVRVAVIAKDAKADEAKNAGADIVGSDDLVE
                     EIQKGNMNFDVLIATPNLMGLVGKVGRILGPKGLMPNPKTGTVTMDVAQAVNNAKSGQ
                     VNFRVDKQGNIHAGLGKVSFSKEQLWDNVSTFVKAINKHKPAAAKGRYIKNAALSLTM
                     SPSVKLETQELLDMK"
     gene            complement(18514..18939)
                     /gene="rplK"
                     /locus_tag="ACHFOB_000479"
     CDS             complement(18514..18939)
                     /gene="rplK"
                     /locus_tag="ACHFOB_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HFN5799306.1"
                     /translation="MAKKVVGEIKLQIAATKANPSPPVGPALGQQGVNIMEFCKAFNE
                     RTKDMAGFNIPVVITVYADKSFTFITKQPPATDLIKKAAGISKGTDNPLKNKVGKLTR
                     AQVLEIVDKKIADLNTKDRDQAAKIIAGSARSMGVEIVD"
     gene            complement(18965..19498)
                     /gene="nusG"
                     /locus_tag="ACHFOB_000480"
     CDS             complement(18965..19498)
                     /gene="nusG"
                     /locus_tag="ACHFOB_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HFN5799307.1"
                     /translation="MSTHKWYAIQTYAGSEMAVKRAIENLVKDNGIEEQLKEIVVPTE
                     DVIEFKNGKEKISERSLYSGYVFALLDLNTELWHRIQSLPKVGRFIGESKKPTPLTEK
                     DINLILEKVHNRAAPKPKISFEEGENVRITEGPFANFTAIVEEYDMVRGLLKLNVSIF
                     GRSTPVEILYSQVEKII"
     gene            complement(19508..19687)
                     /gene="secE"
                     /locus_tag="ACHFOB_000481"
     CDS             complement(19508..19687)
                     /gene="secE"
                     /locus_tag="ACHFOB_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015450 - protein-transporting ATPase
                     activity [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HFN5799308.1"
                     /translation="MEKLITYFKLSKAELRKVIFPLKEQVRNAYITVFVVVAVISLFL
                     ALVDWLMSSIVSAIV"
     gene            complement(19706..19781)
                     /locus_tag="ACHFOB_000482"
     tRNA            complement(19706..19781)
                     /locus_tag="ACHFOB_000482"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(19746..19748),aa:Trp,seq:cca)
     gene            complement(19794..19952)
                     /gene="rpmG"
                     /locus_tag="ACHFOB_000483"
     CDS             complement(19794..19952)
                     /gene="rpmG"
                     /locus_tag="ACHFOB_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HFN5799309.1"
                     /translation="MRIKVGLKCEECGDINYSTYKNSKNTTEKLELKKYCPRLKKHTL
                     HKEVKLKS"
     gene            complement(20005..21204)
                     /gene="tuf"
                     /locus_tag="ACHFOB_000484"
     CDS             complement(20005..21204)
                     /gene="tuf"
                     /locus_tag="ACHFOB_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HFN5799310.1"
                     /translation="MAKEKFSRNKPHVNIGTIGHVDHGKTTLTAAISAVLSRRGLAEL
                     KDYDNIDNAPEEKERGITIATSHIEYETDNRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKADMVDDAELLELVEMEIRELLSS
                     YDFPGDDTPIISGSALKALEEAKAGQDGEWSAKIMDLMAAVDSYIPTPTRDTEKDFLM
                     PIEDVFSISGRGTVVTGRIEKGVVKVGDTIEIVGIKDTQTTTVTGVEMFRKEMDQGEA
                     GDNVGVLLRGTKKEEVIRGMVLAKPKSITPHTDFEAEVYILNKDEGGRHTPFFNNYRP
                     QFYVRTTDVTGSIKLADGVEMVMPGENVRITVSLIAPVALEEGTRFAIREGGKTVGSG
                     VVSKIIK"
     gene            complement(21273..21347)
                     /locus_tag="ACHFOB_000485"
     tRNA            complement(21273..21347)
                     /locus_tag="ACHFOB_000485"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21313..21315),aa:Thr,seq:ggt)
     gene            complement(21452..21528)
                     /locus_tag="ACHFOB_000486"
     tRNA            complement(21452..21528)
                     /locus_tag="ACHFOB_000486"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21492..21494),aa:Gly,seq:tcc)
     gene            complement(21535..21620)
                     /locus_tag="ACHFOB_000487"
     tRNA            complement(21535..21620)
                     /locus_tag="ACHFOB_000487"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21584..21586),aa:Tyr,seq:gta)
     gene            complement(21670..21745)
                     /locus_tag="ACHFOB_000488"
     tRNA            complement(21670..21745)
                     /locus_tag="ACHFOB_000488"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(21710..21712),aa:Thr,seq:tgt)
     gene            complement(21837..22597)
                     /locus_tag="ACHFOB_000489"
                     /pseudo
     CDS             complement(21837..22597)
                     /locus_tag="ACHFOB_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343903.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
     gene            complement(22599..23255)
                     /locus_tag="ACHFOB_000490"
     CDS             complement(22599..23255)
                     /locus_tag="ACHFOB_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5799311.1"
                     /translation="MLEFLNTDTLLRLWQGLFVTLEISFISIIITSIGGLFLGILMSF
                     KNTYIYAFCRLGLEFVRVMPLLVWLFVVYFGFPRWFGWDLSSVSAAIIVFSIWGCFEM
                     MDLVRVSLQSIPKHQYESASSLGLNTVQSFVYIIIPQAMRRLTPMSMNLLTRMIKSTT
                     FAYLIGAVELVKVGQQIIEFHNRNDFAPFIIYGLIFFIFFILCYPITLYSRKLEKKWS
                     "
     gene            complement(23248..23949)
                     /locus_tag="ACHFOB_000491"
     CDS             complement(23248..23949)
                     /locus_tag="ACHFOB_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5799312.1"
                     /translation="MDFDFILVQAPAFLTAAWLTIKLSFFGIIFSLIIGLFCILMSYF
                     KIKILENICKLYIEFSRNTPLLIQLFFLYYALPKFNIHLEQIPPLDLICLSVEETLRP
                     SFACAIAGLSFLGGSYMAESLRAGFEAIRKQQFEAGLSLGFSKFGNLRYVILPQALAI
                     SMPSISANIIFLIKETSVVSIIALPDLVNLMKSLNSLTYKTDELLFLLFMGYLCIILP
                     LSFILLKFEKRLLHA"
     gene            complement(23966..>24184)
                     /gene="nssR"
                     /locus_tag="ACHFOB_000492"
     CDS             complement(23966..>24184)
                     /gene="nssR"
                     /locus_tag="ACHFOB_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HFN5799313.1"
                     /translation="NALDLRTRLLKYLLENEKNLDTISQKQIAIDLNVRAQSLSRVLK
                     ELKISELIDTKKGRIEILNKDMIMKELW"
BASE COUNT         7565 a         4885 c         3219 g         8515 t
ORIGIN      
        1 cttttaaaat atcatcagta tttaactcaa gatcaatctt atctggtttt ttataagttt
       61 tatcataata ctccaaaagc ataacaataa gcttttgcca ttcttttctc tcataacttt
      121 gaagcaaatc ttggcgtaaa tttaagctga tataagggct aattttttgc acacattgtt
      181 gaaattttaa aggagtcatt ttctcttgat aaattttttg tattctttta acgcgatttt
      241 ccaaagaaca aaaacaataa attttaaaag ccttttgcat tttttcataa aatttcaaag
      301 gtaagatgat atcccctatt ttgcgacttt cgctttctat gaaagcaaaa ttttctaaat
      361 tttgcatatt gtgaaaaagt tctgcttcaa aagctttttg cgtaggttgt tttcctaaaa
      421 tatcaccaaa agacgagcct aaatgatttg ctattttttc caaatttata gcttgtggga
      481 gttgttctaa aagctctgtt tttccacagc ctgtattgcc gcaaagagta aaaaaatcaa
      541 aatttatttc attttcaaaa taatgcgtta caaaagttct ataagcttta aagccacctt
      601 ttaaacgcac cactctaaag ccaagctcac ttaaaatcac tgcgatagac tttgaacgca
      661 aacccccacg agaacaataa atccccacct tttctcctat gcgaaaattt tgggtgattt
      721 ttaatatatg cttagcggta ttttgacaaa tataactcgc acccctagcc ttggctaaag
      781 cttgattttt cttataaatt gttcctattt cttgatattc ttcatcattg agtgcataaa
      841 aatttaaagc tcctatcaaa tgagaatgca aaaattctct agggcttctt gcatcgatta
      901 aaagagagaa attttctttt tgaaactctg caaattcaac ttcactgagc atttttaaaa
      961 gccaaaacaa gtttttgata aacttgctcg atattagtac cacaaaccct agtttctcct
     1021 atggttgtga taaaatttgt atctcctgcc cagcgtggca ctagatgata atgacaatga
     1081 aaagctatgc cagctcctgc atctttgctt aaattcatac cgatattgac cccatttgca
     1141 tgaatttgct cttttaaaat tttcactccc aaacgcacaa aatggctcat ttcttgccaa
     1201 atttcatcgc ttaaattttc tatatgctct tcatgtacat aaggaatcac cataaaatgc
     1261 cccgcagaat aaggatagcg gttcatcact ccaaaacaat gttttgctct aaaaattacg
     1321 cctaaatctt catcgctttt aatcttatta gcacaatcac aaaatggaca aacgcttttt
     1381 tctttttcaa aatactcact ccgccatggt gcatacaaat actgcatttt ccctccttaa
     1441 agcaaagctt ttaaagcctt tccttcatct tcttcacgca taaaatattc gccgattaaa
     1501 aaagcatcaa cgcctaaatt ttgtaaatgc tctaaaaatt ctttattttc taaaccactt
     1561 tctgcgatga tgatttttga atttgggatt tgtgggataa gtttttcgca caaactcata
     1621 tccatagtaa aatcctctaa attacgatga ttgataccga taatatccgc tccagcaaaa
     1681 atagccttac tcaaatcctc tttatcatga atttcaacca aagcctcaag acctaaatgt
     1741 cttgcaaact caagcagttt tttaagctct ttcatgctta gcattttagc gattaacaat
     1801 acaaaatctg ccccataaac caaagcttct aaaatttgat actcatcaaa gataaaatct
     1861 tttctaagta aaggaatttg cgtataacgg cgtataagac ttaagtattc taaagaacct
     1921 ttaaaaaaat gtggctcagt caaaacagaa atcgccgtag ctttgttctt ctcataattt
     1981 aaagcgatac tcaaaggatc aaagtcttct ctaataaccc ctttgctagg acttgctttt
     2041 tttacttctg ctatgatttt aacttctttt tctactcttt ttaaagcttt aatcacatct
     2101 tttggaaaga aaggatttga agctaaagaa cgccctaaca tatcataagg aagttttagt
     2161 ttgcgttctt ttaaatcttc ttttgttttt tcaaaaattt tatccaatat catggtttta
     2221 cacacgcctt tatcgctttt atatgagctt tactctcatc agaatttgca aattctttat
     2281 catctaatgt ttgttttaaa atttcccatg cttgcctaca atcgcctagt ttataatacc
     2341 cccaagctaa agaatctaaa taatacaaat tctgcggatc tttttctaag gcaagtttca
     2401 caagctctat acctttttta acatctaaat cataatctat aagcaaatat ccatagtagt
     2461 ttaaatacaa agcattgcta tctttatcga tagcttgttc gaatttttct tttacagaat
     2521 caattacttt cggagtgatt tttttagctt catttgcagc ttcaaattca aaaactgccg
     2581 ctcgtagaag atattcttta ttttttgttt tatgataaag agctaaactc atttttttag
     2641 catcatcaaa gcgttttaaa ttctgataca aagcgaattt aatatcatca tctaaatcat
     2701 actgcaaaga aatttttaaa gcttcttctg ttttgccttg agaatttaaa agctcaacca
     2761 aagccaatgc aaaactttta tttttggtaa gttgataaag ctctttatat atacttttta
     2821 aagcttcgat atttttttca tcaaaataaa ttttagcaag caagacgcaa gttttgagag
     2881 tgcaaccatt ggtttttctt gaaaattcta aaacattttt aatatttaaa gtatcattca
     2941 aaatcgcata aattcctatg agtttaaata aaatttcttc attttgcact tgattataag
     3001 cagatctata gtattttgta gcatttttta aatcattttt tttaaccaaa atatctccgt
     3061 aaagctctaa atttctagga tcactatcct tttttaccaa aagttctttc ataagttttt
     3121 gagcattgtt gatatcattt gaatttaaag cataaagagc actaagtcgc ttaagattgt
     3181 cattttgatt taaataaggc tttgctagat tatttaactc tgcttgcctg tcaagattgt
     3241 ttgctaaagt aagtaaaaat gcattttcta aaaaattagt attattataa tcttgataaa
     3301 gacttaaaaa ttcatctctg gcttctttgt attgtttata atactcataa ttataagcct
     3361 tcataaccct taaatcaaaa tcattgcttt tatattttgt ataatcagga taaacaacat
     3421 tgatttttga acttccacaa gctaccaaaa aaaaggctgc taagacaaat aacaaatacc
     3481 tatacattct ttttctaatt ccttttgatg tgttttaaaa tattcccaaa atggaaaagt
     3541 tctgcattgt tttggacgaa aatcgtagat actgcaattt cttttttgag tatcaaaaaa
     3601 aatgcaagca aagccatctt caaattcgac ttccttaaaa ctcattttaa agcccacttt
     3661 tctcaagtat ttttcagcaa attctttgct ttctaatttt aaatgctttc ttaatgcttc
     3721 taattcttcc ttgcttgcaa aaatattgcc actttctcca gtgcaacact ttccaccgca
     3781 tttctcacaa gcattttcat caaaagcata agaaaaattt ttatcaaata tcataacttt
     3841 ttaacctaaa tcttaagtga atttcttgca tttgtttgct taaaatttca ttttcatata
     3901 caaaaaaagg aggtaaaatc tcacaaggcg attttgaacc tttttttacc tgtatcaaaa
     3961 caagtcttgc ttttttgttt tgatgtgtat gtacaaagca aagctttgtt attttcattt
     4021 tcatatcttt taaaataaaa caaatttcat ctaaagctaa agcttcatag caaaaataca
     4081 aagtaccatt tggcttaagc atagaatttg ctttagttaa aaagctatgc aagggtaaaa
     4141 attcctgaaa tttacttata gctttatgct gatcttcact cttgtaagct ccttgtctat
     4201 aaaatggagg attgcaaact atgaagtcaa atttttttat gctttgaaat tgattgaaat
     4261 catcataaaa aatatcgcct tgtatttggt tggattttaa atttttttca atcaatttta
     4321 tattttcttt ttgaatatca atcaaagata aacttaaatt tgcaatattt tttttaagca
     4381 aaatacctat gataccacag cctgcaccta catcaaaaac agcgccttta attccttgtt
     4441 ttaaaataaa atcagctaaa attaaagaat cactattgta acgataccct tgtgataatt
     4501 gtgctagcgt aatcaaatct gacatatatt ttaatgcgtt ggaattttaa tgcgttttgg
     4561 aggttgttct ttaaatatat tttgttcttt tgttatatta ttatcttctt taaaatttac
     4621 tgggctttgt gctgtcaaaa aagaaattac aaaaattata aaaaaagcaa tttttatcat
     4681 aataacacct catagaatgg tgtccacggc gagattcgaa ctcacggcct caaaattagg
     4741 aattttgcgc tctatcctgc tgagctacga ggacagaaag cgggaaaaat cccgctaaaa
     4801 atttaaccgt ttcttttttt gatgatttca tccgcaacgt ttttaggaac ttcatcataa
     4861 tgatcaaatt ccatagaata agtcgcacga ccttgagttt gacttctaag atcagttgaa
     4921 tatccaaaca tttcagccaa aggacaaaat gctgtgatga ttttatttcc accacgctca
     4981 tccatgctat ttacttgacc acggcgtttg ttaagatctc caataacatc acccatgtaa
     5041 tcttcaggag tttctacttc aactttcatc ataggctcta agatcacagc acctgctttt
     5101 ctagcacctt ctttaaagcc catagaagca gcaagtttaa atgccatctc agatgaatcc
     5161 acctcgtgat aacttccatc ataaacagtt actttaacat cttccacagg ataacctgct
     5221 aaaacaccat tttgtaatgc ttcttgaaca cctttatcaa ctgcaggaat gtattctttt
     5281 ggaattaccc cacctttaat atcattaaca aattcatatc cactacctgg ctcaagcggt
     5341 tcaaggcgta agaatacatg tccatactga ccacgaccac ctgattgttt agcgtatttg
     5401 tattcttgtt caacagtttt tctaatagtt tcgcgataag caacttgtgg ttgacctact
     5461 tcagcttcaa ctttaaattc acgaagcatt ctatcaacga taatttcaag gtgtaactca
     5521 cccatacctg aaatgatagt ttgaccactt tcttcatctg tagaaactct aaaacttgga
     5581 tcttcttgtg ctaatttatt taaagcaata gacatttttt cttgatcagc tttagttttt
     5641 ggctcaactg caacagaaat aactggatct ggaaaatcca ttctttcaag gattacctta
     5701 tctttttcac ttgcaagagt atcccctgtt aaagtatctt taagtcctac aacagcacca
     5761 atttcgcctg cgtaaagcac tttaatctct tctcttttgt tagagtgcat ttttaacaaa
     5821 cgaccaattc tttctttttt atctttagtt gagttatatg cataagaacc gctttctaaa
     5881 caaccgcgat aaacacgcac gaaagtaagt tgtcctacaa atggatctgt catgatttta
     5941 aatgcaagtc ctgcaaactc gccatcatca gttgatttta cagaaacttc tgtgccatct
     6001 tcatattcac ccttgatatt tggcacttca tcaggagctg gcaaataagc cacaacagca
     6061 tcaagtaaag gttgaacccc tttattttta aacgctgtac cgcaaagcat aggaacgata
     6121 gaaagactta aacatcctgc tttaatccct gttttaatct cttcaaggct taattcttct
     6181 ccgcctaaat atttttccat caactcatct gaagtttcag aaactgcttc tatcattttt
     6241 gtgcgatatt cttctgcctt ttctttaagt tcagctggaa tttctttttc tacataatcc
     6301 gttggcttag tatcatcttc ccaaactaaa gctttcatag ttacaagatc gattacgcct
     6361 ttaaaattat cctcagcacc aattggaatt tgaagtggaa ctggattagc ttttaaacgg
     6421 ttgcgaattt gatcttctac attataaaaa tttgcaccga ttctatccat tttatttaca
     6481 aatactattc ttggaacacc gtatttattt gcttgtctcc aaactgtttc actttgaggc
     6541 tgcaccccac ccactgaaca aaataccgca acagcaccat caagaacacg catagatctt
     6601 tcaacttcaa ttgtaaaatc cacgtggcct ggagtgtcaa taagattgat ttgatgatct
     6661 ttccaaaaac aagttgtagc cgcagaagtg atagtaatcc cacgctcttt ctcttgttcc
     6721 atccagtcca tagttgcagc accatcatga acttcaccga ttttatgact cataccagta
     6781 aagaaaagaa ttctttcaga tgtagtcgtt ttacccgcat cgatgtgagc agcaataccg
     6841 atatttctaa ctttttttaa aggagtactt cttgacatac acactccttc ttaccaacga
     6901 tagtgagcaa atgctttatt tgcttcagcc attttataag tatcttcttt cttcttaaat
     6961 gaagcacctt tgctatttgc tgcatctaaa agctcagctg caagtttatc aatcatagtt
     7021 ctttcgcttc tttttcttgc aaaagaaata atccaacgaa tcgccaaagc ttgttgtcta
     7081 gcagggcgaa cttctactgg aacttgatag gttgcaccac ctacacgacg agatttcact
     7141 tctaataaag gcttaatatt ttcaatcgca tcattaaaaa tatcaatacc ttttttctcg
     7201 ccaccttttt tatcaatagc ctccaaagca ccatacataa ttgttgtagc tgtgcttttt
     7261 ttaccatcat acattaaaga attaataaat tttgtgatta ctttattacc ataaatcgga
     7321 tcaggcaaga cttctcttac cggagctttt cttcttctca ttatttttcc ttcaaatttt
     7381 aaattttact caaacaaaat caaatctaac ggatttgtct gtatgaatga ttattttgca
     7441 gcgcctgctt tagggcgttt agcaccatat ttagaacgag aaactgttct ttttgcaaca
     7501 cctgctgtat caagagcacc acgaacgatg tgatatttaa cccctggtaa gtcttttacc
     7561 ctaccaccac gcactaaaac aatgctgtgt tcttgcaagt tatgaccttc accgccgata
     7621 tagctgatca cttcaaagcc actagtaagt cttactttgg caacttttct taacgctgag
     7681 tttggttttt taggtgttgt agtataaacc ctagtgcaaa ctccccttct ttgtggacaa
     7741 tttttaagcg ctggagattt agatttttct aaaacttttt tgcgctcttt tctaaccaat
     7801 tgatttatgg taggcacaat aattcctttc tttaaaaatg taataaactt tggatgatat
     7861 ctaaattttg cttatatttt agttaaaaag attgaaaatg aagaaatata gcccagaagg
     7921 gctataaaat agagttttat tcttgttctt taagttttaa attttgttcg ccataaagcc
     7981 ctgttccaac aggaatcatt ctacctagaa taacattttc ttttaaatct tctaagtagt
     8041 caaatttacc cgctatactt gcttcggtta gaactttagt agtttcttgg aatgaagccg
     8101 cagaaatcac actatcactt ccaatcgctg ctcttgttac acctaaaagc acaggctcag
     8161 caatagcagg ttctccaccc attctaatga ttctttcgtt ttcttcacgg aatttacgtc
     8221 ttgaaaccaa atcaccctcg ataaatttcg tatgtccact atctacaact tttacttgtc
     8281 ttagcatttg agaaacgata acttctatat gtttatcaga aatcacaaca ccttgtccgc
     8341 gataaacttg ttgaatttca gaaatcaaat aataatgcaa ggctttttca cctaaaattt
     8401 taagcacatc atgacttgaa acaactccat ctgtaagttt ttcacctgca tggataaact
     8461 cgccatctct tacttgaatg tgttttgatt tatcgattaa atactcagcg cttgttccat
     8521 cttctgcttg gataataatt ctttctttag aacgcaaagg tttatcaaaa cgaacaacac
     8581 catcaatttc tgcaatcaca gccgcatttt ttggttttct tgcttcaaaa agttcagaaa
     8641 ctcttggaag acctcctgta atatcttttg atttagctgc agcttttgga gtttttgcta
     8701 aaatatctgc ttgagcgatt ttatcaccat catgaacaaa aataacggtt tttggttcaa
     8761 gctgataacg cacagcctta tcaccttttc ctgcgattac caaagttggt ctaactccgc
     8821 ttggcaaata ctcattaatc actaaagaac gcttgcctgt agcttcatca atttgctcat
     8881 cggcactata acctgcttca atatcctcaa agcttacaac accatcaatt tctgcaatga
     8941 tagtattatt ataagcatcc cattctgcaa tcacttttct ttctttttta ggagcacttg
     9001 caatgatagt atttgcatca tcgatttttt cactatcgtt aaattctatc ttagattctc
     9061 ttggaatata gtgtcttttt gcttctctat cattttcatc agcaatcact acaaagaatc
     9121 ctttttcttt aacaatatcg ccttttttaa cattttttac tctatctaaa ccatcgcctt
     9181 taaggatata aaatttaagc gttccttttt cgcctgcttt gatattttga actacaggct
     9241 caccatcttc tactaaaatt tcacttgcaa aagggatacg atttagtaca ttccaaccct
     9301 ctttaatcac ttctacgata ctttcatttt cttctacttg cataccgctt tgatatggca
     9361 aataaagttt tccatctata ctgccactta cacctgctaa ttcatttggt ttagcaagat
     9421 cgtattttct tagtatgtat tttacttctt gttttttatc tttaatagaa acaatcacat
     9481 cttcatgaat attttctata ttaatcacac ctttaaatgg agttttgatt tttggctcca
     9541 caagtaaaat cgccgcattt ctacgatttg ctacgatatt tttaccttct ttgtttttat
     9601 aagttttaag attataaaat ctgataaaac cttctttttg tgcacttact tgtctatctt
     9661 gtaaatccgt acttgcagtt cccccactgt ggaaagttct tagagttagc tgcgttcctg
     9721 gttcaccgat agattgagcg gaaacaattc ctactgcttc gcctggtttt accaatttac
     9781 cttcaccaag attgatgcca taacattttg cacaaattcc ttttttagct ttgcaggtaa
     9841 taggagtgcg gatattgaca ctttttatac cgctttctcc aagaattttt gctttttcct
     9901 catccattaa agtaccttct gcaaaaagca cagaatttgt aataggatca atcacatctt
     9961 cagctaaaac cctgcctaaa attctttctt ctaaagtttc tataatagag ctatctgcgg
    10021 taatttcatt gatttcaaca ccctcatgcg ttccacaatc ttcaatggta atttttacat
    10081 tttgtgcaac atcgataagt tttcttgtca aataaccggc atttgctgtt ttaagagcgg
    10141 tatctgcaag accttttcta gcaccgtgag ttgaaataaa gtattcaaga acatttagcc
    10201 cttcacggaa attcgaaata ataggagttt cgataataga accatcaggt ttagtcataa
    10261 gtcctctcat cgcagcaagc tgagaaattt gagccgcact acccctagca ccagaatctg
    10321 ccatcatata aatagagtta aaaccttctt tatctttttc tacaagcttc atcatctctt
    10381 ttgaaaggac attatttgta cttttccaaa tatcaatgat tttattgtat ctttcccctg
    10441 aagtaatcaa accaagatta taagaatttt gaatttctct tacttgtttt tttgcttcat
    10501 cgatagcttt ttgcttatca ttaggaacaa taatatctgc aatcgaaatt gaaatacctg
    10561 ctttagttgc atactcaaaa cctaaatttt taagtctatc caagaaactt gctgtaatct
    10621 ctaaaccacc ttgtttataa acataatcca caagcgcggc aatgtctttt ttctttaaga
    10681 ctttattcca actattttca ggcacaaaat caggtaaaat ggatttaata atcaatcttc
    10741 ctgctgtagt ggtaatcttt ctaccatcta ccatggtttg tatactcgca tgaatatcca
    10801 aacacttgct ttcaagtgcc atcattactt catcaatgcc tgtacaaatt ttatgcgaac
    10861 ctttagcacc tgctttttcc aatgaaagat aataaattcc taaaaccata tcttgcgatg
    10921 gaacggttac agacttacca cttgctggca aaagaatatt cattgatgaa agcataagca
    10981 ctttacattc tgcaatagcc tcttgagaaa gtggcacatg caccgccatt tgatccccat
    11041 caaagtctgc gttaaacgct gcacaaacta aaggatgaag ttgtatagcc ttaccttcca
    11101 ctaaaacagg atgaaaagct tgaatagaaa gtttatgtaa agtaggcgca cggtttagca
    11161 taacaggatg cccttttact acctcttcta aacattccca aacttcattg gttttgtttt
    11221 ctatcatttt tttagcttgt tttactgtgg ttgcataacc tttttcttca agcttagcta
    11281 aaagatgtgg cttaaagagc tctaaagcca tttttttagg taaaccacat tgatccattc
    11341 taagttttgg acccacaaca ataacactac gacctgaaaa atccaccctt ttaccaagta
    11401 agttttgtct aaaacgccct tgcttccctt tgataatttc acttaaagat tttaatgggc
    11461 gtttatttgc tccttttaca gcattagcac gacgaccgtt gtcaaaaagt gcatcaacag
    11521 cctcttgaag cattcttttt tcatttctta taatgatttc aggtgcatca agttccataa
    11581 gttttttaag acgtgtattt ctattgataa cacgacgata taagtcattc acatcagaaa
    11641 ctgcaaattt tccaccatct aaagccacta aaggacgtaa atctggcggt aaaactggaa
    11701 gatttgtaat catcatccat tcaggacgat ttggtacggc ttcatcgcta tcagtattgg
    11761 cgtttaaatt tgaatttaag aaattttcta ctacttttaa gcgtttaatg atggtttttt
    11821 tcttagcctc tgaatttgta gccgccattt cttctttaag ctgatttaaa agtgccacaa
    11881 gatctaaatt tgcaagtaaa tcacgaacaa cttctccacc cattcttgct ttaaagccac
    11941 tattttcata gcgttgcatt aaattttgat attgctcttc gtttaaaaca tcacaatatt
    12001 ctactttttt ggtgctttca ttatcataga aagcatcgcc tggattttca acgatataag
    12061 cttcataata aagcacacgc tcaagatctt tcatcttaac acccaaaagc gttcctatac
    12121 gacttggaag agaattaaca taccaaatat gagccacagg agttacaagc tcgatatgtc
    12181 ccattctaga acgacgcact tttgaattgg ctacttcaac gccacatttt tcgcacttaa
    12241 cacctttaaa acgcattttt ttatacttac cacaaagaca ttcataatct cttataggtc
    12301 caaaaatctt tgcgcaaaaa agcccatctc tttcaggctt taaggttcta taattgatag
    12361 tttctggttt ttttacttct ccataagacc atgatttgat tttttcagga cttgcaagtc
    12421 ttagttgaaa cgcttcgaaa tccctaggtc ttgcatcttc tttgatttct attactttaa
    12481 atttactcat tatcttcatc cttatcaaaa atctcaacat ctaaagcaag agatttaagc
    12541 tcattggtta atacaaaaaa tgtttcagga attcctgttg ctggaacatt ttcacctttt
    12601 gtcaatgctt tataagcact aaatctacct tctacatcgt ctgatttgat agttaacatt
    12661 tctcttaaag tatgagccgc tccataagct tcaagtgccc aaacttccat ctccccaaat
    12721 ctttgtcccc caaagagtgc tttaccaccc acaggttgtt gggtaactaa gctgtaaggt
    12781 cctgtacttc ttgcgtgaac tttctcatca accaagtggt ggagttttag catatacata
    12841 catcctacat gaacacgctc tgcgattttc tcacccgtgc gtccatcata aagttctgtt
    12901 ttgccgtcca tatctatctt ggccatttca aaaagcttgc taaattcttc tatatttaca
    12961 ccttcaaaaa caggagtagc aaatttaact cctttactcc agtctctagc atagtttaaa
    13021 agctcttcat cgcttaagct tttaataaat tctttttcgc ttgcaagtct tggaatagaa
    13081 caaatttcaa gcatttttgc tcttaattct ttaagaaaat ctttttgcct tctgtcaaaa
    13141 atttcttgaa tctgatctcc aagtctaagt ccaattaaac ccaaatggct ttctaaaatt
    13201 tggcctatat tcatacgact tggaacgcca agtggattaa gtgcaatatc cacactttta
    13261 ccatttggta aataaggcat atccacttca ggaactatag ttgaaactat acctttgttt
    13321 ccgtgacgtc ctgccatttt atcaccgact ttaagctttc tctttgtagc aatataaact
    13381 ttaacaagct taattacccc acttggtaaa atatcatctt tttctaaaat ttcaagcttt
    13441 tcatcgtgtt ctgcttttaa ttttttcttc tcattttgga aatgattttt taaatcatcg
    13501 tattcttttt gaatctcttt agaataagct ttaatcaaag ttgttaaagt aaaacgattg
    13561 attttttcaa gttcgctaat atctgcggtt tgtccttttt tataattttt atctccaatt
    13621 ttttgatcac tatttaaagg ggctttggaa agaagagcac aaacacgaag catttcttct
    13681 ctatccatca tcaaaagtct atcatgatgt tctttttcta aagccatttt ttctttatca
    13741 taagatttta ttgcgcgatc atctttttca tagccttttt tagtgaaaat tttaacatcc
    13801 acaacaacac cctctaaaga agcggttgca taaagggatt tattcacaac atgtcctgct
    13861 ttttccccaa aaatagctct taaaagtctt tcttcaggag ttggtttaac ctcacctttt
    13921 ggagaaacct tacccaccaa aatcatacct ggtttgatat gggtgccaat ttttgcaata
    13981 ccgctctcat caagatgtgc aacatcttct tcttttacat ttgggatatc tttggtaatt
    14041 tcttctatgc cgtcttttag ttctcttgct tcaatttctt tttcataaat gtgcacgctt
    14101 gtaaaggtat cttcacgaat aattctctca cttacaacta tagcatcctc atagttataa
    14161 ccattccaag gcataaaagc gattaaagca tttttaccta tagcaagttc gccttgatcc
    14221 atagaaggac catctgcgat aatttgtcct gcttttacta tatcaccttt tttaacaata
    14281 ggatgttgaa tataatttgt attttgattg gttcttaaat ttttctccat agtataatgg
    14341 tcaataaatg gacctttatc atcttcacct aaaatgaaaa tgcttttatt atccactttc
    14401 tcaaccacac cgccacgctt tgctttaaca gcttcccaag catcacgcgc aataatttgt
    14461 tccatacctg ttcctactat cggagctgaa gcagtaagaa gtggcacagc ttgacgttgc
    14521 atgtttgaac ccattagtgc tctgtttgca tcatcgtgct ctaaaaacgg aatcaaagaa
    14581 gccgcaaccc caacaaccat acctgagcaa agatcgatta attgcacttc ttcgcgtctt
    14641 gcaagtatag tttcaccatc ttgtctagcc tcaacaaatt cttctactat attgccttta
    14701 gcatcaacct tagttgaagc tggtgcgata aataagcctt cttcttgtgt tgctgtaaga
    14761 taaacaactt cattagtcac tttaccattt acaacttttc tatatggtgc ttcaacaaag
    14821 ccaagttcat ttacttttgc ataagtagaa agagtgttaa tcaaaccaat attttgacct
    14881 tcaggtgttt caactggaca aattctacca taatgtgtcg cgtgaacatc acgcacttca
    14941 aaacctgctc tttcttttac aagcccacct tcaccaagcg ctgacaaacg acgcttatga
    15001 gtaacctcac ttaaagggtt ggtttgatcc ataaattgcg aaagctgacc tcctgtaaaa
    15061 aattcaatga tagttgtagt aatcatttta ggattgatta aatcataagg cattacttta
    15121 tcaagatccg catttaaaga agtaaattta tctctgatcg ccttttgcat ttttgcaaga
    15181 cctaaatgaa gttcattggc taaaagttca cctatagaac ggatacgacg atttcctaaa
    15241 tgatctctat catcaatatg tcctttacca ttttttactt taattaaata ttttgcagtt
    15301 ttaataatat cttcattagt caaaacagta acatactcag gcacttcaag acctaactta
    15361 tggttcattt tcatacgacc taccttggta agatcgtatc tttcaggatt gaagaataaa
    15421 tcatttacaa aagccttcgc tgcatctttt accacaggtt cacctgggcg cataactttg
    15481 taaattctaa tcgcagctaa atcattttca tcatcgatat tttcactttg tttaagaagt
    15541 tttagagttt ctccatcttg agcaaaggag ttaataatcg ctgcatcaac gccattagcc
    15601 aagtcatttg ctatatcaaa acttttttgc tctttaatct tagcaagctt actttcatct
    15661 aacaaagtta aagaatcaaa taaaacctct ccactttctt tatcaataat aggatttgct
    15721 aaataacgat taagtaaaat ttctacagga tattctatcc attttaaacc gtctttaata
    15781 agctgttctg cttttttctt tgtaagtctt tttccagctt gatgaacgat ttttcctttt
    15841 tcatctttaa tatcatattc tattctatcc ataaaatcat ttggattaaa ttctgttaaa
    15901 aatttatctt ttttcacatg tatagtctga ataggataaa acaacttaat aatatcttgt
    15961 tttttatacc ctaaagctct aaaaagcata gttacaggaa cttttctacg cttgttgatt
    16021 cttacataca aaacatcttt ggcatcgtat tcaaaataaa gccacgaacc acgatcagga
    16081 ataatttgtg ctgtataaac aagcttattt gcaaccgttg agctttcttc ttctttaaaa
    16141 ataacaccag ggcttctatg taattgattt acaaccaccc tctcaacccc attaatgata
    16201 aaagatacac gatctgtcat taaaggaatt tcgcggatat aaatttcttg ttctttaata
    16261 tcttttacgc caactttttc ccctgttttt tcatcttttt catgcagagt aagacggatt
    16321 ttcattttta aatttacaga ataagtcaaa cctctttcca tgcattcgcg aatggtatat
    16381 tttggcttgc ctatttcact actaacatat tcaagactca atctattttg cggatcatga
    16441 ataggaaaaa ttgatttaaa aactttttct ataccacttt caccattatc aagatttaaa
    16501 aaataatcaa aactcttttt ttgtaattgt agaagatttg ggatttctat ttgttttgaa
    16561 atgtttgaga agtctactct taaacgattt cctaatttat tatctaacat atcgcacata
    16621 cctcatggta aattttgtaa atttaaaaaa gaagacctaa aaattaggta aaaataaaaa
    16681 aagaagactt gccttggcaa atcttcttct aaactttaaa gcttaaaatt acttaagttc
    16741 tactttagca ccagcttctt caagttgttt tttagcttcc tcagcttcag ctttagccac
    16801 accctctttt agagttgaag gagtttgctc aactgcatct tttgcttctt taagaccaag
    16861 gcctgtaaga gcacgaacga ttttaataac ttcaatcttt ttagctccgc catcagttaa
    16921 aacgatatca aattcagttt tttcttcagc agcagctgca gcaccaccag ctgcagcacc
    16981 accagctacc attacaggag cagcagacac accaaatttt tcttcaaatt cttttacaag
    17041 ttctgataac tcaagaacac ttaaatttga aatatattct aatacatctt ctttagaaat
    17101 tgccattttt tatcctttta tttaatttat tcagattctt ttttattttt aagcgcattt
    17161 aaacctattg tgaaattggt aattggcgca ttccaaactt gcaaaagcat agcaagcaac
    17221 tcattgcgtg aaggcatttt agcaagagct ttaaccttag caacatctgc aacttcgcct
    17281 tcaatatgag ctgttttgat ttcaaattta tcattatttt cttcaaattt agcagctact
    17341 tttgaaacac ttagctgatc ttcgccccaa agataaatat ttgtatcttt aagaactaga
    17401 cctgttttac cggaattgtt aagagcaatg ttagccaaag tatttttaac aatttgaact
    17461 tttacattgt tttctcttgc attatttcta agctcttcta gtttttttgt gctaagacct
    17521 ctgtaattac aaactacaat agcttcacta gctttaaaac cttcttcaag tttagcaata
    17581 atctcaactt tttcgcttct agtcacattt tctcctttcc gattgagatt tcaagtagag
    17641 tggaaatcca attaagctta cgcctcgact atcttcaatc taaaataaac atctcaaaaa
    17701 atcaaaaatt ttttcaaatg tttattttaa aacaaaagag ttgcaaaaaa gcaactctta
    17761 tttcatatca agcaattctt gtgtttcaag ctttacagaa gggctcattg tcaaagataa
    17821 agccgcattt ttaatatatc tacctttagc tgcggcaggt ttgtgtttgt taattgcctt
    17881 tacaaaagtg ctaacattgt cccataattg ttctttggaa aaacttactt taccaagacc
    17941 tgcatggata tttccttgct tatcaacacg gaaatttacc tgaccacttt ttgcattatt
    18001 aactgcttga gcaacatcca tagtcactgt tccggtttta ggatttggca ttaaaccttt
    18061 tggccctaaa attctaccaa ctttaccaac aagtcccatt aaatttggag tagcaatcaa
    18121 aacatcaaaa ttcatattac ctttttgaat ttcttctact aaatcatcgc tacccacaat
    18181 atctgcacca gcatttttcg cttcatcagc ttttgcgtct tttgcaatta cagcaacacg
    18241 aactttttta cccgttccag caggcaaaac aacagatcct cttaccattt gatctgcatg
    18301 tcttggatca acattaagtt ttaaagcaat ttctacagtc tcatcaaatt tagcagactt
    18361 taaagtcttt attgtatcaa ttgcatcgct taaagcatac tctttatttg aatcaatttt
    18421 ttgtgataat tcttttaatc tttttgctat cttagccatt tattttctcc gcattttaaa
    18481 gtgctaccgc cttttacctt ggcggtgaaa ggattaatct acgatttcaa cacccataga
    18541 acgagctgaa cctgcaataa ttttagcagc ttgatctcta tctttagtat ttaaatctgc
    18601 aattttctta tctactattt ctaaaacttg agcacgagtt aacttaccca ccttattttt
    18661 aagtggatta tccgtacctt tagaaattcc agctgctttt ttgatcaaat ccgtagctgg
    18721 cggttgtttt gtaataaaag taaaactttt atctgcataa acagtgataa caacagggat
    18781 attaaaacct gccatatctt ttgttctttc attaaaagcc ttacaaaact ccataatatt
    18841 aacaccttgc tgacccaaag caggaccaac aggtggtgat gggtttgctt ttgtggcagc
    18901 aatttgcaat ttaatttcgc ctacgacttt tttagccata acaaatctcc ttacttgata
    18961 taaattaaat tattttctca acttgagaat ataagatctc cactggagtt gaacgtccaa
    19021 aaatagaaac atttaatttt aataaaccac gaaccatatc atactcttct acaattgcag
    19081 taaagtttgc aaatggccct tctgtgattc tcacattttc cccttcttca aaagaaatct
    19141 ttggtttagg cgctgcacga ttgtgaactt tttccaaaat caaattaata tctttttctg
    19201 ttaaaggggt tggctttttg gattctccaa taaaacgacc aacctttgga agagattgaa
    19261 tgcgatgcca aagctctgta tttaaatcaa gaagtgcaaa aacgtatcct gaatacaaac
    19321 ttctttcgct aatcttctcc tttccattct taaattcaat aacatcttca gttggaacaa
    19381 caatttcttt aagttgttct tcaattccgt tatcttttac taaattttca atggctcttt
    19441 taactgccat ttcactgcca gcataagttt gaattgcata ccatttatga gtactcattt
    19501 actctcctta tacgatcgca gaaacaatag aggacataag ccaatccact aacgccaaaa
    19561 acaaagaaat caccgcaaca accacaaaaa ctgtaatata ggcatttctt acctgttctt
    19621 ttaaaggaaa aattactttc cttaattcgg cttttgataa tttaaaataa gttattaatt
    19681 tttccattta tttaaacctt aattatggca gggcaagagg gattcgaacc cccaaccatc
    19741 ggatttggaa tccggcgctc taccgttgga gctattgccc taagggcgca agcttaactt
    19801 tttagcttaa cttctttgtg aagtgtatgt ttttttaatc ttgggcaata tttttttaat
    19861 tctaattttt cagtagtatt tttactattt ttataggtgc tataattaat atcaccacat
    19921 tcttcacact ttaaaccaac tttaattctc atttcaattt tccttaaaaa attaaagcca
    19981 agcttttaac ttggctttat taaattattt aataatttta gaaacaacac ctgaaccaac
    20041 agttttacca ccttcacgaa tagcaaaacg agttccttct tcaagtgcta ctggagcgat
    20101 caagcttaca gtaattctca cattttcacc tggcataacc atttcaacac catcagctaa
    20161 tttaatcgaa cctgtaacat cagttgttct tacataaaac tgtggtctat agttgttaaa
    20221 gaatggagta tgtctaccac cttcatcttt atttaagata taaacttcag cttcgaagtc
    20281 agtgtgtgga gtaattgatt ttggtttagc aagaaccata ccacggataa cttcttcttt
    20341 tttagtacca cgaagaagaa cacctacgtt atctcctgct tcgccttgat ccatttcttt
    20401 tctgaacatt tcaacacctg ttacagttgt tgtttgagta tctttaatac caacgatttc
    20461 gatagtatca cctactttta caacaccttt ttcaattcta cctgtaacaa cagtaccacg
    20521 acctgaaatt gagaaaacgt cttctattgg catcaagaag tctttttcag tatcacgagt
    20581 tggagttgga atatagctat caactgcagc cataagatcc ataatttttg ctgaccattc
    20641 accatcttgt ccagctttag cttcttcaag agcttttaaa gcagaaccag aaataatagg
    20701 tgtatcatcg cctgggaaat cataagagct taataattct ctaatttcca tttcaactaa
    20761 ctctaaaagt tcagcatcat caaccatatc tgctttattc ataaaaacaa caatatatgg
    20821 aacgcctact tgacgagaaa gaagaatatg ctctctagtt tgtggcatag ggccatctgc
    20881 agcagaaaca accaagatcg ctccatccat ttgtgcagca cctgtaatca tgtttttaac
    20941 ataatctgcg tgacctgggc agtcaacgtg tgcatagtga cgattgtctg tttcatattc
    21001 aatatgagaa gtagcaatag taataccacg ctctttttct tctggagcat tatcgatatt
    21061 atcataatct ttaagctctg ctaaacctct tctagaaaga acagcagaaa tagcagctgt
    21121 taaagtagtt ttaccatggt caacgtgacc aatagtacca atatttacgt gtggcttatt
    21181 acgtgaaaat ttttctttag ccattttttt cctccgtata aaaaataaat tgagcaaagc
    21241 aagtcttata tctatataat tttttcaatt catggagctc atagcgggaa ttgaacccgc
    21301 gacctctccc ttaccaaggg agtgctctac ctctgagcca tacgagcgct cagaaaaatt
    21361 atacacaata acagacaaca aaaactctta aatgggatat atactgtaag ttaaaggttt
    21421 taaaatacag ctcccagttc ttttaaatta ttggagcggg aaacgggact cgaacccgcg
    21481 accctcagct tggaaggctg atgctctagc caactgagct actcccgcaa agcatggtgg
    21541 tgagtcgtgg attcgaacca cggaaggcga aagccagcag atttacagtc tgccctcgtt
    21601 ggccacttga gtaactcacc ataaaaatat tgctttttca atattctggt caaacactgc
    21661 taaaataaat ggagctggtt aagggacttg aacccccgac ctgctgctta caaggcagct
    21721 gctctaccaa ctgagctaaa ccagcaaaaa taaaagtgag attataactc aaaaaaaaat
    21781 ttttgtcaag acttttttag tttttctata aaattttagt cttgtaaagt ttattatcat
    21841 aaaccaatat tatttttatc tatttatgat aatcaaacaa atttaaaaat ttctttgctc
    21901 tttcgctttt tggattttca aaaaaacttt taggatcatt ttcttcgatg atttttcctt
    21961 catccataaa aataatttta tctgctacag ctttagcaaa acccatttca tgagtaacaa
    22021 taagcatagt cataccctct tttgcaagat ttaacatcac ttctaaaact tctctaacaa
    22081 tctcaggatc caacgctgct gtaacctcat caaaaagcat taactcagga ttcatacata
    22141 aacttcttac tatggcaatt ctttgctttt gtcctccgct aagttctctt ggataagcat
    22201 gaattttatg caaaagcccc accttttcga gccaaatttt agcctctttt aaaacctcat
    22261 ctttctttct tttttgcact ttcataggcc ctaaaagtat attttcttca acacttaaat
    22321 gctcaaaaag ctcataagat tgaaaaacca taccaacttt ttgacgcatt cttggccatt
    22381 ctttaaaatc tttatctatt ttctcattat caatataaat attaccactt gcaatctctt
    22441 caagcccatt aatacaacgc aaaagcgtag attttccaca tccactagga cctaaaatca
    22501 ccacaacttc tttagcctta acttctaaat taatatcttt taaggcgtga tgcgaaccat
    22561 aatacttttg taaattttct atttttagta tgctcatttt agctccattt tttctctaat
    22621 tttcttgaat ataaagtgat gggataacaa agtataaaaa agataaaaaa aatcaaacca
    22681 taaataataa aaggtgcaaa atcatttcta ttatgaaatt ctataatttg ttgccctact
    22741 tttacaagct ctaccgcacc gattaaataa gcaaaggttg tacttttaat catgcgagta
    22801 agtaaattca tgctcatagg agttaaacga cgcatagctt gtggaataat aatataaaca
    22861 aaactttgca ccgtatttaa acctaaagat gatgcacttt catactgatg ttttggaata
    22921 ctctgcaagg aaacacgcac caaatccatc atctcaaaac aaccccaaat gctaaaaaca
    22981 ataatagctg cacttacaga actcaaatcc cacccaaacc atctaggaaa accaaaatac
    23041 accacaaaaa gccataccaa aagtggcata acacgcacaa attctaaacc taaacgacaa
    23101 aaagcataga tataggtatt tttaaaactc attaaaattc ccaaaaacaa cccacctatc
    23161 gaagtgataa taatactgat aaatgaaatt tcaagagtga caaaaagccc ttgccagagt
    23221 cttaaaagcg tatcggtatt taaaaattca agcatgaagc aacctttttt caaactttag
    23281 caaaataaaa gacaaaggca aaataatgca taaatatccc ataaacaaca aaaacaatag
    23341 ctcatctgtc ttataggtta aggaatttaa actcttcatt aaattcacca aatctggcaa
    23401 ggcaataatg ctaacaactg aagtttcttt gattaaaaat ataatattag cactaatact
    23461 tggcatagaa atagccaaag cttgcggcaa aatcacataa cgcaaatttc caaattttga
    23521 aaaacccaaa gaaagtcccg cttcaaactg ctgttttctt atggcttcaa atcccgctct
    23581 taaactttca gccatataag aacctcctaa aaaactaagt cctgctatag cacaagcaaa
    23641 agaaggcctt aaagtttctt ctacgcttaa gcaaatcaaa tcaagcggtg gaatttgctc
    23701 taaatgtata ttaaatttag gtaaagcata atataagaaa aaaagttgaa ttaataaagg
    23761 cgtatttctt gaaaactcta tataaagctt gcaaatattt tctaaaattt ttattttaaa
    23821 ataactcatt aaaatgcaaa acaagcctat tatcaaagaa aaaataattc caaaaaagct
    23881 tagttttatc gtaagccaag cagccgttaa aaaagcagga gcttgaacta atataaaatc
    23941 aaaatccatt ctctacctta aatttttacc aaagttcttt catgatcata tctttattta
    24001 aaatttcaat tctacctttt tttgtatcaa taagttctga aattttaagt tcttttaaca
    24061 ctcgagataa agattgtgct ctaacattta aatcaattgc aatttgtttt tgtgaaattg
    24121 tatctaaatt tttttcattt tccaaaagat actttaataa tctcgtcctt aaatctaatg
    24181 catt
//
LOCUS       DAZBIH010000015        22503 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.015, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000015 DAZBIH010000000
VERSION     DAZBIH010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22503)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22503)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22503
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.015"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            61..1869
                     /gene="thrS"
                     /locus_tag="ACHFOB_000493"
     CDS             61..1869
                     /gene="thrS"
                     /locus_tag="ACHFOB_000493"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004829 - threonine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006435 - threonyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HFN5799314.1"
                     /translation="MEKEVIAYLDNETIIDSQSVKNTNLKEIYFDNSKESLEVIRHSC
                     AHLMAQAIKSLYPEAKFFVGPVIEDGFYYDFRVESKIGEEDLVKIEKKMKELAEAKIE
                     ISKYEITKSEALAKFQNDDLKQEVLLRIPDGAVSIYKQGEFEDLCRGPHAPNTKFLRF
                     FKLTRVAGAYLGGDEKREMLTRIYGTAFADKESLKEYLTIIEEAKKRDHRKLGTELKL
                     FTFDDEIGGGLPIWLSNGARLRSKLEHMLYKIHRLRGYEPVRGPELLKADAWKISGHY
                     ANYKENMYFTQIDEQEYGIKPMNCVGHIKIYQSDVRSYRDLPLKFFEYGVVHRHEKSG
                     VLHGLFRVREFTQDDAHIFCMPSQIKEQVLEILAFVDNLMKLFDFSYEMEISTKPEKA
                     IGDDEIWEIATKALKEALNEQGLKYGIDEGGGAFYGPKIDIKITDALKRKWQCGTVQV
                     DFNLPSRFKLEYTDSDNEKKQPVMLHRAILGSFERFIGILTEHCAGEFPFFIAPTAVG
                     IVPIGEAHIAYAKEIQKELLELNIDSEVYEKNESLSKKIRIAEKQKLPMILVLGDDEV
                     VKRSVALRDRRAKEQKNLSLDEFIKLVKEKMSEVHF"
     gene            1866..2384
                     /gene="infC"
                     /locus_tag="ACHFOB_000494"
     CDS             1866..2384
                     /gene="infC"
                     /locus_tag="ACHFOB_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HFN5799315.1"
                     /translation="MSKEKEVLLNEEIRADEIRCVGDDGKVYGIISSDEALEIANRLG
                     LDLVMIAADAKPPVCKIMDYGKFRYQQEKKQKEAKKKQKVIDIKEIKLSVKIAQNDIN
                     YKVKHALEFLEQGKHVRFRVFLKGREMATPEAGVALLEKIWTMIENEANRDKEPNFEG
                     RYVNMLVTPKKA"
     gene            2423..3514
                     /locus_tag="ACHFOB_000495"
     CDS             2423..3514
                     /locus_tag="ACHFOB_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HFN5799316.1"
                     /translation="MKENPSFLKEQIITYLGNKRALLSFLNNGFKVAKKELGKDKFSF
                     CDIFSGSGVVSRFAKAHSNYILANDLEDYSKLINECYLANKDKDLLQNIKKYYKNLIQ
                     NLDFQKGFISELYAPKDDDDIKKNERVFYTFKNALYLDTIRQKIENEIPKELRHFFIA
                     PLIYEASVHSNTSGVFKGFYKGKDGIGKFGGEGQNALKRIKGEIELKIPIFSNFSCEF
                     EVMQKDANMLAKELDFFDVVYLDPPYNQHPYSSNYFMLNLIANYKKPEEISKISGIPK
                     DWNRSTFNKSKFAQDALFELINDLKARVILLSYNCEGFVKKEIFLKRLSTLGKCRILE
                     QKYNTFRASRNLKNRNIHLHEQLYILVKN"
     gene            3554..7006
                     /gene="vvfC"
                     /locus_tag="ACHFOB_000496"
                     /pseudo
     CDS             3554..7006
                     /gene="vvfC"
                     /locus_tag="ACHFOB_000496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_172669436.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="autotransporter serine protease VvfC"
     gene            7087..8115
                     /gene="argC"
                     /locus_tag="ACHFOB_000497"
     CDS             7087..8115
                     /gene="argC"
                     /locus_tag="ACHFOB_000497"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0070401 - NADP+ binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HFN5799317.1"
                     /translation="MKIKVGILGASGYAGNELVRILLNHPKVEISYLGSSSSVGQNYQ
                     DLYPNTLLNLCFENKNLDELELDLLFLATPHEFSAKLLNENLLKKMKIIDLSADFRLK
                     NPKDYELWYKFTHPNQELLQNAVYGLCELYKEEIKKASLVANPGCYTTCSILSLYPLF
                     KEKIIDFSSVIIDAKSGVSGAGRSAKVENLFCEVNENIKAYNLALHRHTPEIEEHLSY
                     AAKKKITLQFTPHLVSMQRGILISAYANLKEDLQEQDIRDIYTKYYQNNKFIRLLPPQ
                     SLPQTRWVKSSNFADINFSVDQRTKRVIVLGAIDNLIKGAAGQAVQNMNLMFDFDEDE
                     GLKFFANL"
     gene            8124..8570
                     /locus_tag="ACHFOB_000498"
     CDS             8124..8570
                     /locus_tag="ACHFOB_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HFN5799318.1"
                     /translation="MLIRAMQKSDYEAVYKLWCEIKGFGIRSIDDSKENIENFLDRNP
                     DLSVVAVLGEEIVGSILCGHDGRTGGFYHVCVHKDHRKKGIAHEMTKFCLEALKAQKI
                     NKIALIAFKNNDLGNEFWKHYGFTLREDANYYDLSLNEYNQTSFNA"
     gene            8574..9419
                     /gene="argB"
                     /locus_tag="ACHFOB_000499"
     CDS             8574..9419
                     /gene="argB"
                     /locus_tag="ACHFOB_000499"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003991 - acetylglutamate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HFN5799319.1"
                     /translation="MIMQKYLEKANVLIEALPYIRKFNSKIILIKYGGSAMENEELKH
                     CVMQDIALLKLVGLKPIIVHGGGKDISAMCEKLGVKSEFKNGLRVSDKATTEVASMVL
                     NHINKNLVHSLQNLGVKAIGLCGKDGALLECVKKDENLAFVGTIQKVNSKILEELLEK
                     DFLPIIAPIGMDENFNTYNINADDAACAIAKALRAEKLAFLTDTAGLYEDFNDKNSLI
                     SKISLEQAKILAPKIEGGMHVKLKSCIDACENGVKKVHILDGRVKHSLLLEFFTDEGI
                     GTLVG"
     gene            9423..10610
                     /gene="argD"
                     /locus_tag="ACHFOB_000500"
     CDS             9423..10610
                     /gene="argD"
                     /locus_tag="ACHFOB_000500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HFN5799320.1"
                     /translation="MKMDYKEQSHIIPTYKRFDIVLEKGQGVYLFDDKAKKYLDFSSG
                     IGVCALGYNHAKFNAKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSG
                     TESIEGVMKTARKYAFNKGIKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISG
                     VKFAKYNDISSVEKLVNEKTCAIILESVQGEGGINPANKDFYKALRRLCDEKDILLIA
                     DEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGLSVGAFVINQKVASNSLEAGDHG
                     STYGGNPLVCAGVNAVFEIFKEEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGF
                     MQGLSLDKNVKVAKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKAL
                     KSF"
     gene            complement(10630..11259)
                     /gene="pcm"
                     /locus_tag="ACHFOB_000501"
     CDS             complement(10630..11259)
                     /gene="pcm"
                     /locus_tag="ACHFOB_000501"
                     /EC_number="2.1.1.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004719 - protein-L-isoaspartate
                     (D-aspartate) O-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="protein-L-isoaspartate(D-aspartate)
                     O-methyltransferase"
                     /protein_id="HFN5799321.1"
                     /translation="MNAFEQKRCQNMAEEIAQKVFINEELFNAFCQIPREIFSPLKAH
                     AYRLDALPLANSQWISSPLTVAKMTMALDFKNADSILEIGCGSGYQAAILSKVIRRVF
                     TIERIENLAKKAAQTFRELELFNINVKFDDGQNGWKNYAPYDRILFSAYATQIPEILL
                     DQLSDDGILVAPILHNGKQFITRLRKNGTNLQKEILEECLFVPIVDGKE"
     gene            11348..11896
                     /locus_tag="ACHFOB_000502"
     CDS             11348..11896
                     /locus_tag="ACHFOB_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma carbonic anhydrase family protein"
                     /protein_id="HFN5799322.1"
                     /translation="MLIKFKNHSPKLGQNVFVAEGAKIIGEIEIGDESSIWFNCVLRA
                     DVNFIKIGKRTNIQDLSTVHVWHREFDEKGKLKDAGFPTIIGDDVTIGHNCVIHACVI
                     KNRVLIGMNAVIMDNALIEEDSIVGAGSVVTKGKKFPPRSLILGNPAKFVRELNDEEI
                     SFLKQSALNYMDFKNEFLKDLQ"
     gene            complement(11865..13238)
                     /locus_tag="ACHFOB_000503"
     CDS             complement(11865..13238)
                     /locus_tag="ACHFOB_000503"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004516 - nicotinate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HFN5799323.1"
                     /translation="MMTSKTSLALLCDFYEFTMSQGYFKNNKKDQICYFDIFFRKIPD
                     SGSFAIFAGLEDILDFVENLSFDAEDIEFLRKQGIFDTEFLDFLANFKFKGEIYAMRE
                     GEVIFPNEPLLCIKATTIEAQLLETFLLLSLNHQSLIATKTNRIVRAAKDSKILEFGS
                     RRAQGSEAALKGARAAFIGGCIGSACTLAGKIYNIPINGTMAHSWVQMFENELEAFKA
                     YVKIYPKNPVFLIDTYDCLNSGLKNAIKVFKEFGIQKGGVRIDSGNLLKLSLKIRQEL
                     DQAGLQKCKIIVSNALDEWSIKKLKEQNAPIDIFGVGERLITASSDPIFSCVYKLAAL
                     EDQGIKPKIKISENNEKSTLPHFKKLFRVYDKNTQKILFDELYVFDENPNQDENLERK
                     ELLKLVYKEKRLLKKSSLNTMQDYTKEQISKLDESFLDLDRFVKFEVKLSPKLQNITE
                     DLLKTRF"
     gene            complement(13225..14247)
                     /gene="nrdB"
                     /locus_tag="ACHFOB_000504"
     CDS             complement(13225..14247)
                     /gene="nrdB"
                     /locus_tag="ACHFOB_000504"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009263 - deoxyribonucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HFN5799324.1"
                     /translation="MQRKRIYNPSSNETLGDRKVFDGNPHGILNFTKAKYTWALKLWD
                     LMEANTWFPKEVDTTKDALDYRCNLTAGEKRMYDLVWSQLISMDSFQTNNLADNINPY
                     ITAPEINAVLARQAYEEANHSKSYAVMVEAICDNTDLIYEMEKHDETLREKNDFISSI
                     YEELAGDVDDNKLLLAMVANQILEGVYFYSGFTAIYALARAGKMLGSAQMIRFIQRDE
                     ITHLLLFQNMINSVRKERPDLFHDENINKIYDMFKKAGDLEIKWGKYITQNQIMGFTD
                     DIIEEYIHYLVDQRLSAINLDKLYNAKHPIKWVDDFSKFNDQKSNFFESKVTNYSKGS
                     ISFDDF"
     gene            complement(14261..14671)
                     /locus_tag="ACHFOB_000505"
     CDS             complement(14261..14671)
                     /locus_tag="ACHFOB_000505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HFN5799325.1"
                     /translation="MKTKAKISSRWLRFRALLIDIFLIYVPILYLFYFLLGSKEAFLN
                     NHFITTLCTFLFGLIQAIFLTKKAQSPGLKAYDLYLIDIKTGKKLSFLRILLRYVIFI
                     ISFGLLFGLFVSFARKDRLNLHDILTQSCIVTKA"
     gene            complement(14672..15280)
                     /gene="pyrE"
                     /locus_tag="ACHFOB_000506"
     CDS             complement(14672..15280)
                     /gene="pyrE"
                     /locus_tag="ACHFOB_000506"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HFN5799326.1"
                     /translation="MNLEQIYKDCGAYLEGHFLLSSGKHSQFYLQSAKVLEDPKLAAK
                     LCNELAKIIASYKIEFDSICSPALGGILAGYELARACSKRFIFTERVNKEMTLRRGFE
                     VKKGEKFIICEDIITTGGSALESAKIIESLGGIVVGFAALANRGFCAVENLKSPRKDN
                     AKLPENLPLFTLGNFEFEIYDETNCPLCKKGSKAIKPGSRGN"
     gene            complement(15283..15846)
                     /gene="frr"
                     /locus_tag="ACHFOB_000507"
     CDS             complement(15283..15846)
                     /gene="frr"
                     /locus_tag="ACHFOB_000507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008135 - translation factor activity, RNA
                     binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HFN5799327.1"
                     /translation="MIMLNEIFNKQKTQSEKSLEALKKDFTTLRTGKVNIHILDHITV
                     DYYGTQTPLNQVATVLASDASTISITPWEKPLLKTIESAIAAANIGVNPNNDGESVKL
                     FFPPMTREQREENVKQAKAMGEKAKVSIRNIRKDANDAVKKLEKDKAISEDEAKKAYD
                     EVQKLTDTYTTKIDESVKSKESELLKV"
     gene            complement(15856..16227)
                     /gene="secG"
                     /locus_tag="ACHFOB_000508"
     CDS             complement(15856..16227)
                     /gene="secG"
                     /locus_tag="ACHFOB_000508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015136 - sialic acid transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015739 - sialic acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HFN5799328.1"
                     /translation="MITLLIILQFIIVVVICIAVLLQKSSSIGLGAYSGSNESLFGAK
                     GPAGFLAKFTFVMGILLIANTIGLGYLYNKASKDSLAEKIKVENNNTTIPSAPIVPTT
                     PNTNSIAPSAPQLPSDVNSSK"
     gene            complement(16331..17026)
                     /locus_tag="ACHFOB_000509"
     CDS             complement(16331..17026)
                     /locus_tag="ACHFOB_000509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HFN5799329.1"
                     /translation="MSLYDRDYSRSKEFENTRSSELSIFIKQTYQLFAASLLAATVGA
                     YVGIFALASFFIQSQVTFWILFAVEIGLLFALQWKKREAPLNLVLLFGFTFCSGLTLT
                     PLLISVLALPAGGIIIAQAFALTTVAFAGLSVFAMNTKKDFTVMGKALFIVLIVIVAA
                     SLLNLFFQSSIVNLAISAVAAILFSFYILYDTQNIIRGNYETPIEGAVALYLDFVNLF
                     VSLLNILRSFNSR"
     gene            17186..17821
                     /gene="cynT"
                     /locus_tag="ACHFOB_000510"
     CDS             17186..17821
                     /gene="cynT"
                     /locus_tag="ACHFOB_000510"
                     /EC_number="4.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004089 - carbonate dehydratase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HFN5799330.1"
                     /translation="MENLISGAIKFMQEDFKEHEELFESLKNKQNPHTLFIGCSDSRV
                     IPNLITNTGPGELFVIRNIANIVPPYRVGEDYLATTSAIEYALNSLHIKNIVVCGHSN
                     CGGCNALYYSDEELNKIPNVKKWLTMLDPIKKDVMIFARDDLAMRSWLTEKLNLVNSL
                     QNILTYPGVQEALDEGKIEVHAWYYIIETGEIYEYDFKAKIFTLIQDRKVQ"
     gene            17818..19701
                     /locus_tag="ACHFOB_000511"
     CDS             17818..19701
                     /locus_tag="ACHFOB_000511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008381 - mechanosensitive monoatomic ion
                     channel activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HFN5799331.1"
                     /translation="MKKIIFSLCFFILYLGAQEFKFIDANISKEDEGIYALVEKYVDL
                     NNQIKEFKKNNDENSSTFNGILSEFEKDKKTILAKIPDMIVGQKINEEAVARFLKAKE
                     KLLDVQKKNINKPYIYTDATLNLVYFNIVESFYSSLFEVEKLFKNTASSEDLIATVDK
                     AMENLQNSSSINLNSFKSKITNPEELEKITLKERYISNAVDSYSEILKYLRSNADLLE
                     SNYIFSLLELQVWIDRINEAIGVGFINIGKIVISALVLAFFISLRRFFANIVYFFLVQ
                     LFYRNKNDVDDIKVIFIENIKKPVGFLLIVYAISLCLTIATYPAPLSVNLSNFFHIVY
                     AVLIAWLILRMLDGYGVVLVSKLAQKSGKKEVVNLIIKILYFVIIIIALLYILAQLGF
                     NISAIIASLGIGGLAVALAAKDIIANFFASILLLFDNSFNQGDWVEVSGIEGTVVETG
                     LRKTTIRTFDNCLVFLPNSTIMGANIKNWSKRRMGRHVRMYLGVGYDATPEKLEQCVK
                     DLREFLHTSDLVAHDEDSALKYGDHTTKYRQNLVSINDLEGYKNACYVALSEFADSSI
                     NIELYFYIKEIGGKDFREARQSLMLEFMRIIEKNGLTFAFPSRSIYIENLPPLDLQAK
                     AIK"
     gene            complement(19726..20697)
                     /locus_tag="ACHFOB_000512"
     CDS             complement(19726..20697)
                     /locus_tag="ACHFOB_000512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly scaffold protein
                     NifU"
                     /protein_id="HFN5799332.1"
                     /translation="MGKNSLIGGSIWDEYSQKVQDRMNNPQHMGEFSEEDAKARNAKL
                     IVADFGAESCGDAVRLFWLVDEKTDKIIDAKFKSFGCGTAIASSDTMVDLCIGKTVDE
                     AVKITNLDVEFAMRDNPETPAVPPQKMHCSVMAYDVIKQAAAHYKGISPEDFEDQIIV
                     CECARVSLGTIKEVIKLNDLHSVEEITQYTKAGAFCKSCIKPGGHEKRDYYLVDILAE
                     TRAEIDREKLKNTMKSDVAFDEMTVVGQLKAVESVLDAEIRPMLHNDGGDLEVIDIQK
                     AEGAAIDVYIRYLGACSGCSSGSGATLYAIETILQEELSPNIRVMPV"
     gene            complement(20707..21888)
                     /gene="iscS"
                     /locus_tag="ACHFOB_000513"
     CDS             complement(20707..21888)
                     /gene="iscS"
                     /locus_tag="ACHFOB_000513"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NifS family cysteine desulfurase"
                     /protein_id="HFN5799333.1"
                     /translation="MKVYLDNNATTMLDPNAYELMLPFLKDMYGNPNSLHQYGSATHP
                     ALREALDKLYTGLGANDLDDIVVTSCATESINWVLKGVYFDHILDKERNEVIISSVEH
                     PAVTAAAYFLKSLGVKVIELPVNEEGVSTVEDLRKVISDKTALVSVMWANNETGMIFD
                     IKAMAELAHEFGALFHTDATQAVGKIKVNLTQVGVDFASFSAHKFHGPKGVGGLFIKK
                     GLKLTPLLHGGEHMGGRRSGTLNVPYIVAMGEALRIANTMLDFEDSHIRRLRDKLEDQ
                     ILALPDTTVVGKRERRVPNTILASIKGVEGEAMLWDLNKNGIAASTGSACASEALESN
                     PIMEAIGAEHDLAHTALRLSLSRFNTEEEIDYAAKQIKNATQRLRAISCTYAYNPNNY
                     K"
     gene            complement(22066..22467)
                     /locus_tag="ACHFOB_000514"
     CDS             complement(22066..22467)
                     /locus_tag="ACHFOB_000514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HFN5799334.1"
                     /translation="MTYNEKIISMNNDLLDHQHKELFEISKKLSLMNQRHVGTKELKI
                     VLRELLIMINRHFSDEEAFMREIGYPYINHHTRIHRKIILEIEEIIISEAKFVNIMTE
                     KLNLVVQDFIFKHTAKEDSKIVKYYEEKFKK"
BASE COUNT         7831 a         3103 c         3859 g         7710 t
ORIGIN      
        1 agttaaaatt agaactttat aaacactcac agggtaagtg agcgacaaag ggttaaaaat
       61 atggaaaaag aagttattgc gtatttggac aatgagacaa taattgactc tcaaagtgtg
      121 aaaaatacaa atttaaaaga aatttatttt gataattcta aagaaagttt agaagtaatc
      181 cgtcattctt gtgcgcattt aatggcacag gcgattaaga gtttgtatcc tgaagctaaa
      241 tttttcgttg gtcctgttat agaagatgga ttttattatg attttcgtgt ggaaagtaag
      301 attggcgaag aagatttagt aaaaattgaa aaaaagatga aagaacttgc tgaagcaaag
      361 attgaaattt caaaatatga aatcacaaaa agcgaagctt tggctaaatt tcaaaatgat
      421 gatttaaaac aagaagtttt attgcgtatt cctgatggag ctgtaagtat ttataaacaa
      481 ggtgaatttg aagatttgtg tcgtggtcct catgcgccaa atacgaaatt tttacgcttt
      541 tttaaactca ctcgtgttgc aggagcgtat ttgggtggcg atgaaaaaag agaaatgctt
      601 actcgaattt atggaactgc ttttgcagat aaggaaagtt taaaagagta tttaaccatt
      661 attgaagaag ctaaaaaacg cgatcataga aagcttggaa cagagcttaa gctttttacc
      721 tttgatgatg agatcggagg aggtcttcct atttggttga gtaacggtgc aagacttaga
      781 tctaaacttg aacatatgct ttataagatc catcgtttac gtggttatga gcctgtgcgt
      841 gggcctgaac ttttaaaagc agatgcatgg aaaatcagtg ggcattatgc aaactataaa
      901 gaaaatatgt attttacaca aattgatgaa caagaatatg gcattaagcc tatgaactgt
      961 gtgggacata ttaaaattta tcaaagtgat gtaagaagtt atcgtgattt gcctttgaaa
     1021 ttttttgaat acggcgtggt acatcgtcat gaaaaaagtg gcgttttgca tggacttttt
     1081 agagtgagag aattcactca agatgatgca catatttttt gtatgccaag tcagattaaa
     1141 gagcaggttt tagaaatttt agcttttgtg gataatttga tgaaattatt tgattttagc
     1201 tatgaaatgg aaatttcaac taaacctgaa aaagccatag gtgatgatga aatttgggaa
     1261 atagcgacta aggctttaaa agaagcttta aatgaacaag gtttaaaata cggtattgat
     1321 gaaggtggcg gggcttttta tgggccaaag attgatatta aaattaccga tgctttaaaa
     1381 agaaagtggc aatgtggaac tgtacaagta gattttaacc taccaagtcg ttttaaactt
     1441 gaatacactg atagtgataa tgaaaaaaaa caacctgtaa tgttgcatcg tgcgatttta
     1501 ggttcttttg aaagatttat aggaatttta accgagcatt gtgcgggtga gtttccattt
     1561 tttatcgcac caactgcggt gggtatagtg ccaataggcg aagcacatat tgcttacgca
     1621 aaagaaattc aaaaagaatt attagagctt aatatcgata gcgaggtgta tgaaaaaaat
     1681 gagagcttaa gtaaaaaaat tcgtatcgct gaaaagcaaa aattacctat gattttagtt
     1741 ttaggcgatg atgaggtggt aaagcgtagc gttgctttaa gagatagaag agctaaagaa
     1801 caaaaaaatc ttagcttgga cgaatttatt aaattagtta aggagaaaat gagtgaggta
     1861 cacttttgag taaagaaaaa gaagtattgc tcaatgaaga aataagagcg gatgaaatca
     1921 gatgtgttgg cgatgatggc aaagtttatg gtattatcag tagtgatgaa gctttagaaa
     1981 ttgcaaatcg tttaggactt gatcttgtaa tgatagctgc agatgctaag ccacctgttt
     2041 gcaagatcat ggactatggt aaattccgtt atcaacaaga gaaaaaacaa aaagaagcaa
     2101 agaaaaaaca aaaagtgatt gatataaaag aaatcaaact ttctgtaaaa attgctcaaa
     2161 atgatattaa ttacaaggta aaacatgctt tagaattttt agaacaaggt aagcatgtga
     2221 gatttcgtgt gttcttaaaa ggacgtgaaa tggcaactcc tgaagcaggt gtagctttgc
     2281 ttgaaaaaat ttggactatg atagaaaatg aagctaatcg tgacaaagag ccaaattttg
     2341 aaggtcgtta tgtaaatatg cttgtaactc caaaaaaagc ttaatccact tttgtggata
     2401 aggcttttaa aggttttaaa ttttgaaaga aaatccttct tttttaaaag agcaaattat
     2461 aacttatctt ggaaataaaa gagcactttt aagtttttta aataatggct ttaaggtagc
     2521 taaaaaagaa cttggtaaag ataaatttag tttttgtgat atatttagtg gctcaggtgt
     2581 tgtaagtcgt tttgcaaaag cacactcaaa ttatatttta gccaatgatt tagaagatta
     2641 ttcaaaactc atcaatgagt gttatcttgc taataaagac aaagatttac ttcaaaatat
     2701 aaaaaagtat tataaaaatt taatccaaaa tttagatttt caaaaaggtt ttatcagtga
     2761 gctttatgct ccaaaagatg atgatgatat taaaaaaaat gaaagggttt tttatacttt
     2821 taaaaatgct ttatatcttg atactataag gcaaaaaatc gaaaatgaaa ttccaaaaga
     2881 attgaggcat ttctttatag ctcctttgat ttatgaagcc agtgttcatt caaatactag
     2941 cggagttttt aaaggttttt ataagggtaa ggatggtatc ggaaaatttg gaggagaagg
     3001 acaaaatgca cttaaacgca ttaaaggaga aatagagctt aaaatcccta ttttttcaaa
     3061 tttttcttgt gaatttgaag tgatgcaaaa ggatgcaaac atgcttgcaa aagaacttga
     3121 tttttttgat gtagtgtatc ttgacccccc ttataatcag cacccttata gttctaatta
     3181 ttttatgcta aatttaattg caaattataa aaaacctgaa gaaatttcta aaatcagtgg
     3241 cattccaaag gattggaacc gcagtacttt taataagtca aaatttgccc aagatgcttt
     3301 atttgaactt attaatgatt taaaagcaag agtgatttta ctttcttata attgtgaagg
     3361 ttttgtaaaa aaagaaattt ttttaaagcg tttaagtact cttggaaaat gtcggatttt
     3421 agaacaaaaa tataatactt ttagagcttc tcgcaatctt aaaaatcgta atatccatct
     3481 tcatgaacaa ctttatattt tagttaaaaa ttaaattttg tgctaaaatt atatttataa
     3541 aaaggaggga tttatgaaac taaaattatc tttttgtaca ttaatggcat ttggtttttc
     3601 taactatctt tttgcttcag ctattgatcc aaagttattt tcaagaatat cttgattttg
     3661 ccagtaataa aggcaaattt caagtaggtt aaagtggctt tgaaatttta gcaaaaaatc
     3721 ctagtcaaaa tatctctttt aatgtggcta tgattgattt ttctacttca aatcgtggag
     3781 gaaaattcca aggagaattt accaatatag gacaatctta tatagtcagc gcttctcata
     3841 tgagtacaag tttaaatact gggaagtaaa taaaggctat gtgaaacaag gtagtgtttt
     3901 acactttgga ggggtaacaa atagaatcgt aagctcaagt gataatttta cttataaaaa
     3961 agaaaatgtg ggttttgctg ttttaaaaat gagtaagatt agtctcaata aaagtgcaaa
     4021 tttgagtaaa gatttaaatc ttattgaaaa aaattctggc gatggtggag atatttatga
     4081 atacaaggat ccattttggg atagttgtca aagtggaaaa tgtgattatt caaaaggtaa
     4141 aggcaagctt tttgatagtt cgcgttatga gtactttgta agagagggaa gtggtattgt
     4201 agctttaggt tttgaagata caaataaagt acccattaag atttttgatt ctaatgaaat
     4261 caatttagga ggttttgtca gtttaactcc taaaaatact gaagataagc gttttaagtt
     4321 gcaatttctt aattatacca atgataaaag aaattctttt acaagttctt caatatcccg
     4381 ggattctgga agtggagttt atgtttatga taagatggat aaaaatggta tttagtgggt
     4441 gtggtaagta cgagtaattg taatgtccat tttactatgg atatacttgt ttataggttg
     4501 attatgcttt gatcaatcaa gtaaagatca atgaatttta aaatgctcat aaaatagtca
     4561 taggatctgg aacttataca cttagtagcg atggcttggt gaaagatggt aaaaaaatag
     4621 aaaatgtaag tttgatttct aagactaatg tgggttatgt aagctataaa aattcttttg
     4681 atgataaaaa taattgtgat aagagaattg aagaaatgca aaatagcaag gatttgtatt
     4741 tttctcaaaa tggaagtata aatttaaata gcgatgtgga tttaggcgct agtgttttaa
     4801 atttgataaa aattcaaatt ggcaaataac aggcgataaa tggcttatac atggcggaat
     4861 ttatgctgat aagggttcaa ggtagaatat aatgttaaaa ccaaaaaaga tgattttctt
     4921 tataaaatgg gcgaaggaga gcttgttgtc aaaagtcaaa gtgtggatac aggacttaga
     4981 atgggtgagg accaaggtaa gtcttgaggg tgaaggttta agttttggcg aaatttatat
     5041 gaatggcaga actttggatt tatcaggctt aacattaaat tttgatcaaa ttaaaactaa
     5101 ctctaataat gtttttatca caagttctca atcaggaaca catttaaatt tagaaaacaa
     5161 gcaagattat ctttatcatg gcaatatctt ttcagatgaa gctgtaacaa tgagtgccaa
     5221 tacagacaaa gctttgattt ttgatggtaa tatttacaat aaagaaggtg tttttaggac
     5281 agaaaatgcc aagttaaatt ttcaaggaca tgctagaata cacgcttatg taagcaaaga
     5341 acaagctaaa aaacttcaag aacatggttt aagtgcttta accaaacctg taagttttac
     5401 acaagaagat tgggtttttg ttttaaaaga gcttaattta gaaaaaaagc gagttttatt
     5461 tagggcgtaa tgtaagctta aaagtagaaa accttaatgc taaaaattcc aaaatagagc
     5521 ttggaagtaa aaatttgtgg atcgatgaaa aagatgggga aaatattatt gataagactg
     5581 atgattattc ttatggagat gttgtataaa caggagttgg caaagaaatg gcttttgagc
     5641 aaaagcttca aaatacccaa aatgctaaga tagaaaaggt ttattttagt gtaaatttaa
     5701 atcttgatca ttctgatgtt actttgcaaa acacattttt tagtggtaat atcaaaggta
     5761 tcaatgatac gcaaaaaaat cttgcgatta aagattcttt gcttgagtct catatacaaa
     5821 tgagcaatct tcaagtagaa aaaagtgcta tttataggaa agttgatgca aaaaaaatta
     5881 agtgcaaata atacaatatt taaaatcaat gtggattttg aaaattctaa agcagattat
     5941 attaattcta aggaaagcac acaaggagta aataatactt tagtattaat ttttcttaat
     6001 aatcctagta aaaagcgggt ttaaatatct tactagctca tttaaaagat gaaaataaac
     6061 atttaacaaa ggaatttttt actatgtcaa atgtgagcaa ggttttagta cgtatacccc
     6121 aaatgttgtt ttttctcata atgaggaaaa ttttgcccag agtggaattt agaaaaaatt
     6181 aattctaaga ttaaagatga atattttttt actaatgata atactcaagc tattgtaaaa
     6241 actaaatcta tacttgctca agctatttta ggctccatga tagaatggaa taatatgcac
     6301 aaaagaatgg gggaattacg caataatcct tatgaaagtg gtgtatagtt aagaactttt
     6361 ggatggggta cgagtgatga gtataatagt ggaaaatact ttgaaattca aagcggacat
     6421 gataaattaa acgagtattc gaattttgag ctttacagtg gagtaagttt ttatagtgat
     6481 tttgttttag atatatttat tatcaaaatg aaataaatgc aaattttatt ccaggaaatc
     6541 aaggtagatt agatgataat gatggtttgc ataatattat cttaagtgct gagttgggtt
     6601 atagaaaagc ttatgataaa ttttatcttg agctgagttt ggaatttatc agtggttatg
     6661 taggagctat ggatctaaaa ggagatattg ctagtttaaa acgattttct tatattcctt
     6721 tagtcgtaaa aacagcattt ttcataggaa gtcaaaatta aaatttaaat tttagaacag
     6781 gacttggttt gtatgcggat ctgattaaag caggagatca aatcttggag gatcaagcaa
     6841 gtcagagaag atatgaagga aaaaagatca aagaatgttt ataaatttag gaaatgatta
     6901 taagcttaac gataaaacac gctttagttt tgaatttgaa aagacatttt ttggcgattt
     6961 aaatgtagat tggagtgcaa atgctaattt aagatatagt ttttaaataa aaaataattt
     7021 aaaaattgta tttttatttt aagctttttt gtttataata cttgctttta catttaaagg
     7081 ataaagatga aaataaaagt tgggatttta ggagcgagtg gttatgctgg aaatgaactt
     7141 gttcgcattt tgcttaatca tcccaaggtt gaaatttctt atttgggttc gagttctagc
     7201 gtggggcaaa attatcaaga tctttatcct aacacccttt taaatttatg ttttgaaaat
     7261 aaaaatttag atgaacttga acttgatctt ttgtttttgg ctactccgca tgaatttagt
     7321 gctaaacttt taaatgagaa tttattaaaa aagatgaaaa tcattgattt aagtgcggat
     7381 tttcgtctta aaaatcctaa agattatgag ctttggtata aattcactca tcctaatcaa
     7441 gagcttttgc aaaatgcggt ttatggactt tgtgagcttt ataaagaaga gataaaaaaa
     7501 gcaagtttag tggcaaatcc aggttgttat accacttgtt ctatcttaag tctttatccg
     7561 ctttttaaag aaaagatcat tgattttagc tcagttatta ttgatgcaaa aagtggggta
     7621 agtggagcag gaagaagtgc aaaggtggaa aatctttttt gtgaagttaa tgaaaatatc
     7681 aaagcttata atttagcttt gcatcgccat actcctgaaa ttgaagagca tttaagctat
     7741 gcagccaaaa agaaaatcac tctacaattt acccctcatc ttgtgtctat gcaaagagga
     7801 attttaatca gtgcttatgc aaatttaaaa gaggatttgc aagaacaaga tatacgcgat
     7861 atttatacaa aatactatca aaacaataaa ttcataaggc ttttaccgcc gcagtcgctt
     7921 ccgcagactc ggtgggttaa atcaagcaat tttgcggata taaattttag tgtagatcaa
     7981 cgcacaaagc gtgttattgt gcttggtgct attgataatt taatcaaagg tgcagcagga
     8041 caagctgttc aaaatatgaa tttaatgttt gattttgatg aagatgaagg acttaaattc
     8101 tttgcaaatt tgtaaaggat aaaatgttaa tacgagctat gcaaaaaagc gattatgaag
     8161 ccgtttataa gctttggtgc gagataaaag gctttgggat aagaagtatt gatgatagca
     8221 aagaaaatat agaaaatttt ttagatagaa acccagatct tagtgttgta gcagtgcttg
     8281 gtgaagaaat tgtaggaagc atactttgcg ggcatgatgg acgcacaggg ggattttatc
     8341 atgtatgtgt gcataaagat catagaaaaa agggtatagc acacgagatg acaaaatttt
     8401 gtcttgaggc cttaaaagct caaaagatca ataaaatcgc cttaatcgct tttaaaaaca
     8461 atgatttagg caatgagttt tggaaacatt atggttttac tttaagagag gatgcgaatt
     8521 attacgatct ttctttaaat gagtataatc aaactagctt taatgcttaa ggaatgatca
     8581 tgcaaaaata tttagaaaaa gccaatgtct taatcgaagc tttgccttat atacgcaaat
     8641 ttaattccaa gattatactt ataaaatacg gcggatcagc tatggaaaat gaagagctaa
     8701 agcattgcgt gatgcaagat atagctcttt taaaacttgt gggtttaaag cctatcatcg
     8761 tacatggtgg gggaaaagat atttctgcta tgtgtgaaaa attaggcgta aagagtgagt
     8821 ttaaaaacgg tcttagggtt agtgataaag ccactactga agtagccagt atggttttaa
     8881 atcatatcaa taaaaattta gtccatagtt tgcaaaattt aggagttaaa gccatagggc
     8941 tttgtggtaa agatggcgcg cttttagaat gtgtgaaaaa agatgaaaat ttagcttttg
     9001 ttggcacgat acaaaaggta aattcgaaaa ttttagaaga gcttttggaa aaagattttt
     9061 tacctatcat tgctcctatt ggcatggatg agaattttaa tacttataat atcaacgctg
     9121 atgacgcagc ttgtgcaatc gctaaggctt taagggctga aaaacttgct tttttaactg
     9181 atactgcagg gctttatgag gattttaatg ataaaaattc tttaatttct aaaatcagcc
     9241 ttgaacaggc taaaatttta gctcctaaaa tagaaggtgg tatgcatgta aaattaaaat
     9301 cttgcattga tgcttgtgaa aatggagtca aaaaggtaca tattttagat gggcgtgtga
     9361 aacattcttt gttgcttgag ttttttaccg atgaaggtat aggcactttg gtgggttaaa
     9421 ggatgaaaat ggattataaa gaacaaagtc atattatccc tacctataag cgttttgata
     9481 tagttttaga aaaagggcag ggggtttatc tttttgacga taaggctaaa aaatatcttg
     9541 atttttcaag tggcataggt gtttgtgctt taggatataa tcatgctaaa tttaatgcca
     9601 aaatcaaagc gcaagtggat aagcttttgc atactagcaa tttatattat aatgaaaata
     9661 tagctgctgc agctaaaaat ttagccaaag ctagtgcttt agagcgtgtt ttttttacaa
     9721 attctggtac agaaagtata gaaggagtga tgaaaacagc tagaaaatac gcctttaaca
     9781 aaggtattaa gggtggacaa tttatcgctt ttaagcattc ttttcatggg cgtactttag
     9841 gggctttatc gcttactgct aatgaaaaat atcaaaagcc ttttaaacct ttaatttcag
     9901 gggttaaatt tgcaaaatat aatgatattt caagcgttga aaaactggtg aatgaaaaaa
     9961 cttgtgccat tatcttagaa agcgtgcaag gagaaggtgg aataaatcct gcaaataaag
    10021 atttttacaa agccttaaga aggctttgcg atgaaaaaga tatattatta atcgctgatg
    10081 aaattcaatg tggcatgggt agaagtggaa aattttttgc ctatgagcac gcacaaattt
    10141 tgcctgatat catgacttca gctaaggcct taggttgtgg gcttagtgtg ggtgcttttg
    10201 taataaatca aaaggtagca agcaattctt tagaagcagg cgatcatggt agtacttatg
    10261 gtggaaatcc tttagtttgt gcaggagtga atgcagtttt tgaaattttt aaagaagaaa
    10321 aaattttaga aaatgtcaat aaactcacgc cttatttaga gcaaagttta gatgagttga
    10381 taaatgaatt tgatttttgt aaaaaacgca aaggcttagg gtttatgcaa gggctgagtc
    10441 ttgataaaaa tgtaaaagta gctaaggtca ttcaaaaatg ccaagaaaat gcacttttac
    10501 tgataagttg cggggagaat gatttgagat ttttacctcc tttgattttg caaaaagaac
    10561 atattgatga aatgagtgaa aagttaagaa aggctctaaa gagtttttga taaattttgt
    10621 aaaaaaagtt tattctttcc catctactat aggcacaaat aaacattctt ctaaaatttc
    10681 tttttgtaaa tttgtgccat tttttctaag gcgtgtgatg aattgtttgc cattgtgtaa
    10741 aataggagca actaaaatac catcatcgct taattgatcg agtaaaattt caggaatttg
    10801 tgtcgcataa gcagaaaata aaatcctatc ataaggagca taatttttcc agccattttg
    10861 tccatcatca aattttacat tgatattaaa aagttctaat tctctgaaag tttgagcggc
    10921 ttttttggct aaattttcta tgcgttctat ggtaaaaaca cgccttataa ctttgcttaa
    10981 aatcgcagct tgatagccac ttccacaacc tatctctaaa atactatcag catttttaaa
    11041 atctaaagcc atagtcattt tagctacagt taaaggtgaa ctaatccatt gagaatttgc
    11101 taaaggcaaa gcatcaaggc gataagcatg ggcttttaaa ggagaaaaaa tttcacgcgg
    11161 aatttgacaa aaagcattaa aaagctcttc attgataaaa actttttgtg caatttcttc
    11221 agccatattt tgacatcttt tttgttcaaa tgcgttcatt acttctccta taaatttaaa
    11281 taaaaattgt aactaaaaaa gttgaaatag agttaaactt agctatactt aaataaaaag
    11341 gaaaaaaatg cttataaaat ttaaaaatca tagtcccaaa ctaggtcaaa atgtttttgt
    11401 tgcagagggc gctaaaatca taggagaaat agaaatagga gatgaaagta gtatttggtt
    11461 taattgtgtt ttaagagccg atgttaattt tataaaaatt ggcaaaagaa ccaatattca
    11521 agatcttagc acggtacatg tttggcatag ggaatttgat gaaaaaggaa agttaaaaga
    11581 tgctggtttt cctacaataa taggagatga tgtaactata ggacataatt gcgttatcca
    11641 tgcttgtgtg ataaaaaatc gtgttttaat cggaatgaat gctgttatca tggataatgc
    11701 tttgatagaa gaagatagca tagtgggtgc tggaagcgtt gtaacaaagg gtaaaaaatt
    11761 tccgccacgc tctttgatac ttggaaatcc tgcaaaattt gtgcgtgaat taaacgatga
    11821 agaaataagc tttctaaaac aatccgcttt aaattatatg gattttaaaa acgagttttt
    11881 aaaagatctt cagtgatatt ttgaagttta ggcgagagtt ttacttcaaa tttcacaaaa
    11941 cgatcaagat ctaaaaaact ctcatcgagt tttgaaattt gctcttttgt ataatcttgc
    12001 atagtattta aagatgactt tttaagaagt cttttttctt tgtagactaa ttttaaaagt
    12061 tctttgcgtt ctaaattttc atcttgattt gggttttcgt caaaaacata aagttcatca
    12121 aaaaggattt tttgcgtgtt tttatcataa accctaaaaa gctttttaaa atgaggtagg
    12181 gttgattttt cgttattttc gctgattttg attttaggtt ttatgccttg atcttctaag
    12241 gctgcgagtt tataaacaca actaaaaata gggtcacttg aagcagtgat caatctttca
    12301 cctacaccaa agatatcaat aggtgcattt tgttctttga gttttttaat gctccattca
    12361 tcaagtgcgt tagaaactat gattttacat ttttgaagtc ctgcttgatc aagttcttgt
    12421 ctgattttca aactcaactt aagtaaattt ccagaatcta ttctcacgcc gcctttttga
    12481 ataccaaatt ctttaaaaac tttaatcgca tttttaagtc cgctatttag acaatcataa
    12541 gtatcaatca aaaaaacagg attttttgga taaattttca cataagcttt aaaagcttca
    12601 agttcatttt caaacatttg cacccaagaa tgtgccatag ttccattgat agggatatta
    12661 taaatttttc ctgctaaagt acaagcactt cctatgcaac ctcctataaa agctgctctt
    12721 gctcctttta aggctgcttc acttccttgt gctctgcgtg aaccaaattc taaaatttta
    12781 ctgtctttag ctgcacgcac gatacgattg gttttggtag caataaggct ttggtggttt
    12841 aaacttaaaa gtaaaaaagt ttctaaaagc tgtgcttcta tggttgtagc tttaatacat
    12901 agcaaaggtt cgtttggaaa aatcacttct ccttcacgca tagcataaat ttcaccctta
    12961 aatttaaagt tagctaaaaa atctaaaaat tctgtatcaa aaataccttg ttttcttaaa
    13021 aattctatat cttctgcatc aaaactcaaa ttttcaacaa agtctaaaat atcttcaaga
    13081 cctgcaaaaa tagcaaaaga tcctgaatct ggaatttttc taaaaaatat atcaaaataa
    13141 caaatttgat cttttttatt gtttttgaaa tagccttgag acattgtaaa ttcataaaaa
    13201 tcacaaagca aggctaaaga agttttagaa gtcatcaaag cttatactac ccttagaata
    13261 attcgttact ttactttcaa agaaattgct cttttgatcg ttaaattttg aaaaatcatc
    13321 cacccattta ataggatgtt ttgcattgta taacttatct aaattgatcg cacttaatct
    13381 ttgatctaca agataatgga tatattcttc tatgatatca tcagtaaagc ccatgatttg
    13441 attttgagtg atgtatttac cccatttgat ctcaagatct ccagcttttt taaacatatc
    13501 ataaatttta ttgatatttt catcatggaa caaatcaggt ctttctttgc gtactgaatt
    13561 gatcatattt tgaaataata aaagatgtgt gatttcatct ctttggataa agcggatcat
    13621 ttgtgctgaa cctagcattt ttcctgcacg cgcaagtgcg taaatagcag taaaaccact
    13681 gtaaaaatat actccttcta aaatttgatt tgccaccata gctaaaagaa gtttattatc
    13741 atctacatcg cctgctaatt cttcataaat gcttgaaata aagtcatttt tttcacgcaa
    13801 agtttcatca tgcttttcca tttcataaat caaatctgta ttatcgcaaa tcgcttctac
    13861 cataacagcg taagattttg aatggtttgc ctcttcataa gcttggcgtg ctaaaactgc
    13921 attgatttca ggagctgtga tgtaagggtt gatattgtct gctaaattat tggtttgaaa
    13981 actatccata gaaataagct gactccaaac caaatcatac attctttttt cacctgcagt
    14041 taaattacag cgataatcaa gtgcatcttt agttgtatcc acttcttttg gaaaccaagt
    14101 atttgcttcc attaaatccc aaagttttaa agcccaagta tattttgcct tagtgaaatt
    14161 taaaattcca tgtgggttac catcaaaaac tttacgatct cctagagttt cgtttgagct
    14221 tggattgtaa attctttttc tttgcatttt taacctttct ttatgctttg gtaactatac
    14281 aactttgagt taaaatatcg tgtaaattta aacgatcttt tcttgcaaaa ctgacaaata
    14341 aaccaaagag taagccaaaa cttataataa atatcacata tcttagtaaa attctaagaa
    14401 aacttagttt ctttcccgtt tttatatcaa taagatataa atcatatgct ttaagacccg
    14461 gactttgtgc cttttttgtt aaaaaaatag cttgaatcaa accaaataaa aaagtacata
    14521 aagttgtgat aaaatggttg tttaaaaaag cttctttaga gcctaataga aaataaaata
    14581 aatacaaaat aggaacataa ataagaaaaa tatctataag caaagctcta aatcttagcc
    14641 atctagagct aatttttgct ttagttttca tttaatttcc acgacttcct ggttttatag
    14701 ctttactccc ttttttacaa agtgggcaat ttgtttcatc ataaatttca aattcaaaat
    14761 ttcctagagt aaagagtggt aaattttcag gtaatttcgc attatctttt cttggagatt
    14821 ttaaattttc tactgcacaa aaaccacgat ttgccaatgc tgcaaaacct acaacaatgc
    14881 cacctaaact ttcaatgatt tttgcactct ctaaagcact accacctgta gtaatgatat
    14941 cttcacaaat tataaatttt tcaccctttt ttacttcaaa accacgtctt aaagtcattt
    15001 ctttatttac tctttcagtg aagataaaac gtttgctaca agctcttgca agctcataac
    15061 ctgctaaaat tccacctaac gcaggagaac aaatgctgtc aaattctatc ttatagcttg
    15121 caataatctt tgcaagttca ttacaaagtt ttgctgctaa ttttggatcc tctaaaactt
    15181 ttgcactttg aagataaaat tgcgaatgtt tacctgaact tagtaaaaaa tgcccttcta
    15241 aataagcacc acaatcttta taaatttgct ctaaattcat cgttaaacct ttaaaagttc
    15301 actttctttg ctttttacac tctcatcaat ttttgttgta taggtgtcgg taagtttttg
    15361 cacttcatca taagcttttt ttgcttcatc ttcgcttatt gccttatctt tttctagttt
    15421 tttaactgca tcgttggcat ctttgcgtat atttcttata gaaacttttg ccttttcacc
    15481 catagcttta gcttgcttta cgttttcttc tctttgctct ctagtcatcg gagggaaaaa
    15541 taattttaca ctttcgccgt cattgtttgg attgacaccg atatttgcag ctgcaatagc
    15601 gctttctatg gtttttagta aaggtttttc ccaaggagtg atgctaatag ttgaagcatc
    15661 acttgctaaa acagttgcta cttgatttaa aggagtttga gttccataat aatccactgt
    15721 aatatgatct aaaatatgga tattaacttt tccagttctt aaagtggtaa agtctttttt
    15781 taaggcttct aaagattttt cactttgggt tttttgtttg ttaaaaattt catttagcat
    15841 tatcatttcc tttaattatt tacttgaatt aacatcgctt ggaagttgtg gtgcacttgg
    15901 agcgatagaa tttgtgtttg gggtagtagg cacaatagga gcacttggaa tagtagtgtt
    15961 gttgttttct actttaattt tctctgctaa agagtccttg ctagctttat tgtataaata
    16021 accaagacca atagtatttg caataagtaa aattcccatg acaaaggtaa attttgccaa
    16081 aaatccagcc ggtcctttgg caccaaataa actttcattg cttccactat aagctccaag
    16141 tcctatactt gaactttttt gaagtaaaac tgctatacaa ataactacaa cgatgataaa
    16201 ttgtaaaatg attaaaagag tgatcattga aaattcctaa aagttaattt ttaaatgatt
    16261 attttaacta aataaaactt gaaaagtttt gaaacttgaa aagtttttgt gagaaaaatc
    16321 ccacaaaaac ttatctgcta ttgaagcttc ttaagatatt aagtaaagat acgaaaagat
    16381 taacaaaatc aagataaagt gctactgcac cttcgattgg agtttcataa tttccgcgga
    16441 taatattttg cgtatcataa agaatgtaaa atgaaaataa tattgcagct actgctgaaa
    16501 tagctagatt aactatactg ctttggaaga aaaggtttag taaagatgct gctacaataa
    16561 cgatcaatac tataaataaa gctttaccca taacagtaaa atcttttttt gtattcatag
    16621 caaatacact aagtcctgca aaagcaactg ttgttaaagc aaaagcttga gcgatgataa
    16681 ttcctccagc tggtagagct aaaaccgaaa taagcaaagg tgtaagcgtt aaacctgagc
    16741 agaaagtaaa accaaaaagt aaaacaagat ttaatggagc ctctcttttt ttccattgca
    16801 aagcaaataa aagtccgatt tcaacagcaa aaaggatcca aaaagttact tgtgattgta
    16861 taaaaaatga tgctaaagca aaaattccta catacgcacc tactgttgca gctaataatg
    16921 aagcagcaaa aagttgataa gtttgtttaa taaaaatact taattcgctt gagcgtgtat
    16981 tttcaaattc ttttgatctt gagtagtctc tatcataaag actcataaaa ttctccttgt
    17041 aaaattgtta gattttttaa aatcttgagc gaaatctaac atattagact aaataaaaag
    17101 ttaatttata taatatctta tgcttaaatg aaatctttgc tgaaattttg ttataatttc
    17161 aagattttag tttcaggttg gttttatgga aaatcttatt agcggtgcga ttaagtttat
    17221 gcaagaagac tttaaggagc atgaagaact ttttgaaagt ctaaaaaata agcaaaatcc
    17281 ccatactctt tttataggtt gttctgattc tagagtaatt ccaaatttga tcactaatac
    17341 gggtccaggt gagctttttg taatacgaaa tattgcaaat atagttccac cttatcgcgt
    17401 tggagaagat tacttggcga caacttcagc aatagagtat gctttaaatt cattgcatat
    17461 taaaaatatc gtcgtttgtg gccatagtaa ttgtggaggt tgcaatgctc tttattattc
    17521 tgatgaagag ttaaataaaa ttcctaacgt gaaaaaatgg cttactatgt tagatccgat
    17581 aaaaaaagat gtaatgattt ttgcaagaga cgatttggct atgcgttcat ggcttacaga
    17641 aaaattaaat ttagtaaatt ctttgcaaaa tatacttact tatccaggcg tgcaagaagc
    17701 tttagatgaa ggaaaaatag aagtacatgc ttggtattat attatagaga caggtgaaat
    17761 ttatgagtat gattttaaag caaaaatttt tactttaata caggatagga aagttcaatg
    17821 aaaaaaatta tttttagttt atgttttttt attttatacc ttggagcaca agaatttaaa
    17881 tttattgatg cgaatattag taaagaggat gaaggaattt atgctttagt tgaaaaatat
    17941 gttgatctta acaatcaaat taaagaattt aagaaaaaca atgatgaaaa ttcaagcact
    18001 tttaatggta ttttaagtga atttgaaaaa gacaaaaaga ctattttagc aaaaataccc
    18061 gatatgatag taggacaaaa gattaatgaa gaggcagtgg ctagattttt aaaagcaaaa
    18121 gaaaaattac tagatgttca aaaaaagaat attaataagc cttatattta tacagatgcc
    18181 actcttaatc tagtttattt taatattgtg gaaagttttt attcttcttt gtttgaagtg
    18241 gaaaaacttt ttaaaaatac agcaagtagt gaagatttga ttgctactgt tgataaagca
    18301 atggaaaatt tacaaaattc ttctagtata aatttaaaca gttttaaaag caaaattaca
    18361 aatccagaag aattagaaaa aattacccta aaagaaagat atatcagtaa tgctgtagat
    18421 tcttattctg aaattcttaa gtatttacgc tcaaatgcag atttgcttga aagtaattat
    18481 attttttcat tacttgagct tcaagtttgg atagatcgta taaatgaggc aattggagta
    18541 ggtttcatta atatcggaaa aatagtaatt tctgctttgg ttttagcatt ttttatatct
    18601 ttaagacgtt tttttgcaaa tatagtatat tttttccttg ttcagctttt ttatagaaat
    18661 aaaaatgatg tagatgatat taaagtcatt tttattgaga atattaaaaa acccgtaggt
    18721 ttcttgttga ttgtctatgc tatttctctt tgtcttacta tagcaactta tcctgcacct
    18781 ttgagtgtaa atttaagtaa tttttttcat atagtttatg cagttttaat tgcatggctt
    18841 attttaagaa tgcttgacgg ttatggtgtg gtattggttt ctaaacttgc tcaaaaaagt
    18901 ggaaaaaaag aagttgtaaa tttaattatt aaaattttat attttgtcat tattatcata
    18961 gctttattat atattcttgc tcaacttggt tttaatattt cggctattat tgcatctttg
    19021 ggaattggtg gtttagctgt tgctttagcg gcgaaagata tcattgcaaa tttctttgct
    19081 tctatactct tactttttga taatagcttt aatcaaggag attgggtaga ggtttcaggc
    19141 atagaaggaa ccgtggttga aacaggactt agaaaaacta ctattagaac ttttgataat
    19201 tgtcttgtat ttttaccaaa ttcaactatt atgggagcta atatcaaaaa ttggagcaaa
    19261 agacgcatgg gtcgccatgt tagaatgtat ttgggtgttg gttatgatgc tactcctgaa
    19321 aaactagaac aatgtgtaaa agatctaaga gaatttttgc atacaagtga tttagtagct
    19381 cacgatgagg atagtgcatt aaaatatggc gatcatacaa caaaatatcg tcaaaatctt
    19441 gtatctatta atgatttaga aggctataaa aatgcttgtt atgtggcttt aagtgaattt
    19501 gcagatagta gtattaatat agagctttat ttttatatca aagaaatagg tggaaaagat
    19561 tttagagaag ctagacaaag tttaatgctt gagtttatgc gtataattga aaaaaatggt
    19621 ttaacctttg ctttcccaag tcgtagtatt tatatagaaa atttaccacc ccttgatttg
    19681 caagcaaaag ctataaaata gcaagataaa atcttgctat tttttttaaa ctggcataac
    19741 gcgtatattt ggacttaatt cttcttgtaa aattgtttca atagcataaa gtgttgcacc
    19801 acttccacta gaacaaccac tacaagcacc aagataacga atataaacat caattgctgc
    19861 accttcagcc ttttgtatat caatcacttc caaatctccg ccatcattat gaagcatagg
    19921 gcgaatttca gcatctaaaa cactttcaac tgcttttaat tgtcccacta cggtcatttc
    19981 atcaaaagcc acatcacttt tcattgtatt tttgagtttt tctctatcta tttcagctct
    20041 agtttcagct aaaatatcta caaggtaata atctcttttt tcatgtccgc ctggtttgat
    20101 acaggattta caaaaagcac ccgctttagt atattgtgtg atttcttcta cgctatgcaa
    20161 atcattaagt ttaatcactt ctttaatagt tccaagactt accctagcac actcgcaaac
    20221 tataatttga tcttcaaaat cttcaggact tataccttta taatgcgctg ctgcttgttt
    20281 gattacatca taagccataa ccgaacagtg cattttttga ggtggaacag ctggagtttc
    20341 tggattgtca cgcatagcaa attccacatc taaatttgtg atttttactg cttcatctac
    20401 agtttttcct atacaaagat ccaccatagt atcactactt gctatagctg taccacaacc
    20461 aaaactttta aattttgcat cgataatttt atcagttttt tcatctacaa gccaaaaaag
    20521 tcttactgca tcgccgcaac tttctgcacc aaaatcagct acgatcaatt ttgcattgcg
    20581 tgctttagca tcttcttcac taaattctcc catatgttga ggattattca ttctatcttg
    20641 aactttttgt gaatactcat cccaaatgga tccaccaatt aaactatttt ttcccatttt
    20701 tcatccttat ttgtaattat ttggattata agcataagta caagaaattg ctcttaatct
    20761 ctgtgttgca tttttaattt gttttgctgc ataatcaatt tcttcttcag tattaaaacg
    20821 tgacaaagaa agccttaaag ctgtatgtgc taaatcatgc tccgcaccga tagcttccat
    20881 aataggattg ctttctaaag cttcacttgc acaggctgag cccgtacttg cagctatacc
    20941 atttttattt aagtcccaaa gcattgcttc gccttcaaca cctttaatac ttgctaagat
    21001 tgtattaggc acacggcgtt ccctttttcc aaccactgtt gtatcaggca aggctaaaat
    21061 ttgatcttct agtttatctc ttaaacggcg tatatgagaa tcttcaaaat caagcatagt
    21121 gtttgcaata cgcaaagcct cacccatagc cactatgtaa ggtacattta aagttccgct
    21181 tctacgacca cccatgtgtt ctccaccgtg taaaagtggg gtaagtttaa gtcctttttt
    21241 tataaaaagt ccacccacac cctttggtcc atgaaattta tgtgccgaaa atgaagcaaa
    21301 atcaactcct acttgagtta aattaacctt tattttacct actgcttgag tagcatctgt
    21361 atgaaaaaga gcaccaaatt catgtgcaag ttctgccatc gctttaatat caaaaatcat
    21421 acctgtttca ttatttgccc acataacact tacaagtgct gttttatcgc taatcacttt
    21481 acgcaaatct tctacagtag aaaccccttc ttcgtttaca ggaagttcta taacttttac
    21541 tccaagactt tttaaaaaat aagcagcagc agtaacagca gggtgttcta cactagaaat
    21601 aatcacttca ttgcgttctt tatctaaaat atgatcaaaa tacacaccct taagcaccca
    21661 gttaatgctt tctgtcgcac aggaggttac aactatatca tctaagtcat ttgctccaag
    21721 ccccgtataa agtttatcca aagcttctct taaggcagga tgtgttgcgc ttccatattg
    21781 atgaaggcta tttggatttc catacatatc ctttaaaaaa ggtagcatca actcataagc
    21841 attaggatca agcattgtcg ttgcgttgtt atctaaatat actttcactt taaaatcctt
    21901 aatttatcct taattttaat taggatattt tttatcttta tttgaaaatg gataataaca
    21961 aaaatttata aaaattaggt taaaaattat aacaaaaata aaatgctaaa gtaaaatttt
    22021 aaagtgaaat attttgtgaa ttttatatag caaaaatgag aaatactatt tcttaaattt
    22081 ttcttcgtaa tactttacta tctttgaatc ttctttggct gtatgtttaa agataaaatc
    22141 ttgaacaacg agatttaatt tttcggtcat tatatttaca aatttagctt cactgatgat
    22201 aatttcttca atttctaaga taatttttct atgaattctt gtatgatggt tgatataagg
    22261 atatcctatt tctctcataa aggcttcttc atctgaaaaa tgtctattga tcattatcaa
    22321 caactctctt aagacaattt ttaattcttt tgttccaaca tgacgttggt tcattaaaga
    22381 gagtttttta gaaatttcaa aaagttcttt atgttgatga tctaaaagat cattattcat
    22441 tgaaataatt ttttcattat aagtcatggt tttgagtatt tttatattta tatttttcga
    22501 gag
//
LOCUS       DAZBIH010000016        22219 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.016, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000016 DAZBIH010000000
VERSION     DAZBIH010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 22219)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 22219)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..22219
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.016"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            1..1380
                     /locus_tag="ACHFOB_000515"
                     /pseudo
     CDS             1..1380
                     /locus_tag="ACHFOB_000515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019109180.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2972 domain-containing protein"
     gene            complement(1390..3243)
                     /locus_tag="ACHFOB_000516"
     CDS             complement(1390..3243)
                     /locus_tag="ACHFOB_000516"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0032508 - DNA duplex unwinding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HFN5799335.1"
                     /translation="MQRSDIRYYELAICGLYLDNLTFHSFDEIKPLTQVLVDLKSKKN
                     LKAIVLKECQKPDFKTIEIKEITKYFLTPLQLELANFIVYYYASKLGFVLGFFETSPK
                     YECQKMFFKDTPKLSNQQQNALSFLQKENNSLLFADTGSGKTEIYISLIKECLEQGKQ
                     ALLLMPEIALTPQMQKRLEVYFKDNFFLWHSKISKKKKQEYLECFCKGEVLLVAGARS
                     ALFLPFRNLGLIVVDEEHDNSYKASNQPFINARDLALFLGQKNNIKVVLGSATPSLTS
                     FYKQKSFRLKGTFFESKKHFLYDENELSITPMLLSELEKSLKHQKQAIVFLPTRANFR
                     QIICKDCGETIKCPFCSIAMSMHKKKNILKCHYCNYTSLIEQNCPSCKGEMLEARKIG
                     TAELLELLQNALPLAKIAKFDSDEITSVKKLNTILKNFNENKIDILIGTSMLAKGHDY
                     HSVDLSVILGLDEYLLRPSFRASEETLALAMQVAGRAGRKGEARVLLQTKNRAFFERY
                     IENYDAFLKDELENRKDLYPPFKRLLRVLIEDKDQKNAQKLCEKFASQFRNIKQVELV
                     GYGICGVEMLYGKYRFYLLLRSENHKALVAIENYILQFKNASADIDPIDFV"
     gene            complement(3225..3662)
                     /locus_tag="ACHFOB_000517"
     CDS             complement(3225..3662)
                     /locus_tag="ACHFOB_000517"
                     /inference="COORDINATES: protein motif:HMM:TIGR02532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HFN5799336.1"
                     /translation="MNKAFTLLELVFVILILGIFSSLSLSFINTTKDEVKILKLKMDY
                     EMLSSALALMRSQMRLKNLNFPEILDNAQNNQAKEKLFYCLNDCDYSLLDTPIYSDFK
                     SWIKIGKNHYRFALNAKEMVEFIYDSKEGLLKCIGSSRCKDLI"
     gene            complement(3659..3901)
                     /locus_tag="ACHFOB_000518"
     CDS             complement(3659..3901)
                     /locus_tag="ACHFOB_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799337.1"
                     /translation="MGDNLKQVIVNVNAKDFIVKCSEEFANFLEDDIALISGGTKKIE
                     LKRFVDAFVKKSYENYILERELKKLIKAINEELPTK"
     gene            complement(3891..4121)
                     /locus_tag="ACHFOB_000519"
     CDS             complement(3891..4121)
                     /locus_tag="ACHFOB_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799338.1"
                     /translation="MFDEKIINTMTDKVNELIEKYNEVCEANEALRNELVSVKAQNEA
                     KSNQIMRLEEELKSRNIESEDIYKKIEAVLGR"
     gene            4275..6248
                     /gene="uvrB"
                     /locus_tag="ACHFOB_000520"
     CDS             4275..6248
                     /gene="uvrB"
                     /locus_tag="ACHFOB_000520"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HFN5799339.1"
                     /translation="MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTF
                     TMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSKNHVEYFISYYDYYQPEAYIPRT
                     DVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
                     GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDEL
                     DAMYHYNVLENKKGKDLKRFILYPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENK
                     LVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDIPYTLFDYFAIKDRKFL
                     VIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFV
                     SATPAPLELELSKENIFHQIMRPTGLLDPLIELKDSDNQVEFLFDEAKKVIQRNERVL
                     VTVLTKKLAEELTRYYLELGIKVKYMHSDIDAIERNEIIRGLRSGAFDMLIGINLLRE
                     GLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKSMQEAMD
                     TTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKL
                     VKELRKQMLEAAKALEFEKAAAIRDEINKLRDL"
     gene            complement(6243..8171)
                     /locus_tag="ACHFOB_000521"
     CDS             complement(6243..8171)
                     /locus_tag="ACHFOB_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4118 domain-containing protein"
                     /protein_id="HFN5799340.1"
                     /translation="MQRQSPEQILKKLEVKAKEEEKNKLAKLKIFLGYAAGSGKTYAM
                     LSEARTLRDNGVDVVLGYIEPHDRPETMALTQGFESIANLEIPYKNIVLKEFDLDATL
                     KRKPALVLVDELAHTNAKGLRNEKRFQDIEELLKAGIDVYTTLNIQHLESLNDLVANI
                     SKIEVKERIPDRIFDEADQVELVDIEPNKLLKRMQDGKIYKEKQAKLALENFFRQERL
                     IALREIALRRLASRVNLRASEQRLINDDLAYHTGEHILVCINASNAKVIRAAARLALA
                     FHAKLSALYIKNPNIKEEKALEENIELAKSFDAEIISVYDDIARQIAEYSSLSNVSKI
                     VLGKNKDKKKFKEEIFEAVAKKAPNIDLYLVNENQISTPKIRSKKGFDFLGFLKITGV
                     LLLATFIAFVFHKFNTQPSNIVMIFILAVFASSFISDNKIFAFYSSLVSVLIYNFFFL
                     EPIFSLKVHDSGNIITFTTMFIVGFLTAVFTRRLKLQSKELTKRAYRTAILLENSEKL
                     ARVKSKQELWEQLGNQALKLLNLPIIIYPINKNNILSKPLLFFNDDKQMLKNCFSADE
                     IAIAQWVATNKERAGVCTNTLPNANAMYLPIEDGEKTKGVIGIVLKEKRPLQDFQYEI
                     LSALLNEVGVRTRDIFLL"
     gene            complement(8174..8782)
                     /gene="kdpC"
                     /locus_tag="ACHFOB_000522"
     CDS             complement(8174..8782)
                     /gene="kdpC"
                     /locus_tag="ACHFOB_000522"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002861367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpC"
                     /protein_id="HFN5799341.1"
                     /translation="MLRTLLSFFVVMLILCTLIYPFALNTVAKFIFPYQSSGSLVDKE
                     GRPTLDISKAVGSKLLGQDFNKPYFLHSRASVSNYNTSDTNESSVSSGGFNYAMSNPA
                     LKERVQKDLQKFLDENPQITKEQIPLDLLSASGSGLDPHISLQAALVQIPRISQSSKI
                     TKEELEKIIQENTESKFLGIFGEEKVNVLAVNIAIAKAMKKE"
     gene            complement(8784..10829)
                     /gene="kdpB"
                     /locus_tag="ACHFOB_000523"
     CDS             complement(8784..10829)
                     /gene="kdpB"
                     /locus_tag="ACHFOB_000523"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HFN5799342.1"
                     /translation="MSKKQNKLITKEILNNAIKGAFLKFDPRFMVKNPVMFMVEVGLI
                     LTLILSIFPTLFNGNSDERIYNILITFILFITLLFANFAESIAEGRGKAQAATLRQSK
                     KDSKARRIKSDGSEEMLNSSELKIGDIVLVKAGELIPNDGEIIEGAASVDESAITGES
                     APVMREAGGDFSSVTGGTTVLTDFLKIKILVGAGESFLDKMINLVEGAARQKTPNEIA
                     LNTLLIVLSLSFLVVVVSLYPFMQFLGVSLPISWLVALLVCLIPTTIGGLLSAIGIAG
                     MDRVTRFNVIALSGKAVESCGDVDTMILDKTGTITFGNRLANEFYEVQGISKEEMIKA
                     CVLSSLKDETPEGKSIVALAQKMGYELEGNDIKEFIEFSAQNRMSGVDLQDNTKIRKG
                     AFDAIRAYISEMNGKIPSDLETKVMEISNLGGTPLVVCKNEKILGVIYLKDTVKPGLK
                     ERFDELRKMGIKTLMCTGDNPLTAATIAKEAGLDGFIAECKPEDKIEAIKKEQAQGKI
                     VAMTGDGTNDAPALAQADVGIAMNSGTQAAKEAANMIDLDSNPTKILEVVEIGKGLLI
                     TRGSLTTFSMANDIAKYFTILPAMFSVVLPQMQILNIMHLATPQSAILSALIFNAIII
                     PLLIPIAMRGVKFKPMKSEHLLLRNLSIYGLGGMIAPFIGIKIIDIPTAWILRILGV"
     gene            complement(10839..12530)
                     /gene="kdpA"
                     /locus_tag="ACHFOB_000524"
     CDS             complement(10839..12530)
                     /gene="kdpA"
                     /locus_tag="ACHFOB_000524"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_function: GO:0008556 - P-type potassium transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HFN5799343.1"
                     /translation="MLEILITLIIAFILALIFGNYLYKIASCNKTIFDFIFNPIDNLI
                     YKICAIDRKNMTWQKYSLHLIAFNALVAIFSFVIFYLQDKLFLNPNSINSMKGDLNLN
                     TVISFITNTNLQHYSGESALSLLSQNTGILLAMFVSSASGYSACMAFCRALCGMQMGN
                     FYEDFTRIITRLMLPLSFILAVIFISEGVVQNYHANFSVLTLENKFQSIATGPVAALE
                     SIKHLGTNGGGFFGANSSMPFENPTSLTNFLQILSMMLIPSACVVAFGLMVYHRKERQ
                     GFALMGKEGGVIFGAMGIIFIISLLLIYFSEKMSNPNLDSLGLNANLGNLEGKEIRFG
                     TDGSSLFSAVTTAFTTGSVNNMHDSLNPLSISATLLNMMLNVAFGGEGVGLMNMIIYV
                     LLTVFICALMIGRTPEFLGKKIESAQMKLIALVILIHPLLILVLSALAVVFAKDSISN
                     PSFHGLAQILYEFSSSAANNGSGLEGLKDDNLFWNLSTAFAMFCGRYLVLIAQLAIAG
                     SLLAKNTQENTANSLKTDNLTFMFVLVCIIYIFAALTFFPVLTLSSVAEYLSLWH"
     gene            complement(12540..12727)
                     /gene="kdpF"
                     /locus_tag="ACHFOB_000525"
                     /pseudo
     CDS             complement(12540..12727)
                     /gene="kdpF"
                     /locus_tag="ACHFOB_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344095.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0031004 - potassium ion-transporting
                     ATPase complex [Evidence IEA];
                     GO_process: GO:0006813 - potassium ion transport [Evidence
                     IEA];
                     GO_process: GO:0043462 - regulation of ATP-dependent
                     activity [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit F"
     gene            complement(12869..14293)
                     /locus_tag="ACHFOB_000526"
     CDS             complement(12869..14293)
                     /locus_tag="ACHFOB_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HFN5799344.1"
                     /translation="MDFLTSLSEGGQFAIQIIIVLICLFYGAKKGGIALGLLGGIGIL
                     MLVFAFHIKPGKPAIDVMLTILAVVVASATLQASGGLDVMLQIAERILRRNPKFLTIL
                     APFVTCFLTILCGTGHVVYTIMPIIYDIAIKNGIRPERPMAAASISSQMGIIASPVSV
                     AVVSLTALLLNANHKLAGFDGYINLLQITIPSTLFGVLCIGIFSWFRGKDLDKDEVFQ
                     EKLKDPEFKKYVYGDSKTLLGVKLPKSNWVAMWIFLGAIALVALLGVFDFLRPNWGQV
                     VKNGIPQVDALGNPKMDVLSMVSVIQMFMLLAGSLIIIFTKTDAKKIGSNEIFKSGMI
                     ALVAVFGISWMADTMFAVHTPMMKVALGDIVKEHPWTYAVMLLLISKFVNSQAAAISA
                     FVPLALGIGVEPGVIVAFAAACYGYYILPTYPSDLATIQFDRSGTTHIGKFVINHSFI
                     LPGLIGVITSCIAGYFIAMAAGYL"
     gene            complement(14457..15707)
                     /locus_tag="ACHFOB_000527"
     CDS             complement(14457..15707)
                     /locus_tag="ACHFOB_000527"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HFN5799345.1"
                     /translation="MLKQKITQAPKTKISQTLRSWLPILQANIEDLKENLDKFAEDNP
                     FLNVQDSIQTHDKGKNYFDSFYKHNVNSAFVDSKGLAKKSVYELLNEQILPPLFPTNK
                     SQELAKKIIECLNEEGYFEYDEEFLKEYSLEEIERVRARFKFLDPVGVGAKDYKEAFL
                     FALENMELDEDIDEFCRMLIMDFENIQNYTKEPLYKEALAVLKRFSTPPFLEYFEDSR
                     IIVPDIFVYKENGEIKVKINDDYYPEISIQTDGLEHDFLSHYIKEAKNLVDALAMRKA
                     TLYKIGLMIVEYQYDFFMGKEIKPMTFKDLALDLERNASTISRAVANKYLSCERGLIP
                     LRDFFAFALDEEGETSNVGVKEFVANLVKNEDRNKPLSDSKILELIKEEFKVDIGRRT
                     ITKYRKHLNIASSTDRKKLYELEG"
     gene            complement(15707..16435)
                     /gene="lptB"
                     /locus_tag="ACHFOB_000528"
     CDS             complement(15707..16435)
                     /gene="lptB"
                     /locus_tag="ACHFOB_000528"
                     /EC_number="7.5.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015221 - lipopolysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015920 - lipopolysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LPS export ABC transporter ATP-binding protein"
                     /protein_id="HFN5799346.1"
                     /translation="MSKLEIVNLEKIIKKTKIIHGISLEVNSGEVVGLLGPNGAGKTT
                     TFYMICGLISPSSGKVLLDGLDVTKDPLNKRARSGIGYLPQESSIFKDLSVEDNLLLA
                     AQIFYKDKKILHDKVEQMLELLSIEPIRLRKGLSLSGGERRRCEIARSLMCEPKFLLL
                     DEPFAGVDPIAVAEIQTLIKELKRLGIGVLITDHNVRETLAICDRAYVIRSGSLLASG
                     NADEIATNKDVKKYYLGAEFKLLD"
     gene            complement(16428..16835)
                     /gene="tsaE"
                     /locus_tag="ACHFOB_000529"
     CDS             complement(16428..16835)
                     /gene="tsaE"
                     /locus_tag="ACHFOB_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HFN5799347.1"
                     /translation="MKEFILAKDEIKTMLQIMPKEGVVLLQGDLASGKTSLVQAWVKF
                     LGLDARVDSPTFSTMQKYENHDICIYHYDIYQEGLEGLLANGLFENFFEKGLHLVEWG
                     GENLKKTLMKFGISTIQIKISIKDDKRKYEIYE"
     gene            complement(16832..17077)
                     /locus_tag="ACHFOB_000530"
     CDS             complement(16832..17077)
                     /locus_tag="ACHFOB_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HFN5799348.1"
                     /translation="MRVDKFLNVVNITKRRAISEDMCKSGVVGINGVIVKASKEVKVG
                     DIITLHFTEYTQKYKVLAIPSTKSIPKNAQNEYVVKL"
     gene            17232..18452
                     /locus_tag="ACHFOB_000531"
     CDS             17232..18452
                     /locus_tag="ACHFOB_000531"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HFN5799349.1"
                     /translation="MKNEVKKVVLAYSGGLDTSIILKWLQDEYNCEVVTFTADIGQGE
                     ELEPARKKALSLGIKEENIFIKDLRDEFVKDYVFPMFRANAIYEGEYLLGTSIARPLI
                     AKTQAQIALQTGADAVSHGATGKGNDQVRFELGYLAFNPDLKIIAPWREWDLNSREKL
                     LAYAQKHGIDISKKKGKSPYSMDANLLHISYEGLVLEDPAHAPEEDMWRWSKSPKDAP
                     NESEIIELDFQKGDLVAINGEKLSPAGLLTKLNELGCKHGIGRLDIVENRYVGMKSRG
                     CYETPGGTILLKAHRALESITLDREAAHLKDELMPKYASLIYNGYWFSPERMMLQALI
                     DESQIHANGRVKLELYKGNVMVIGRESANDSLFNAAYCTFEEDEVYNQKDAAGFIKLN
                     ALRFIIAGKNGRKF"
     gene            18465..18908
                     /gene="rplI"
                     /locus_tag="ACHFOB_000532"
     CDS             18465..18908
                     /gene="rplI"
                     /locus_tag="ACHFOB_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HFN5799350.1"
                     /translation="MKVLLIKDVKALGKAGEVKEVKDGYGQNFLIAKGFAKAATNEVL
                     KKYESDKKKEAENLRFEIANLEKLKEELSKITLEISKPVGANGSLFGGVTKDEIAHAL
                     KEQSHIEIDKKSLECDTFKSLGLHEVSVKLGHAIHAKFNINIKAE"
     gene            18908..19450
                     /gene="hslV"
                     /locus_tag="ACHFOB_000533"
     CDS             18908..19450
                     /gene="hslV"
                     /locus_tag="ACHFOB_000533"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0004298 - threonine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0051603 - proteolysis involved in protein
                     catabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HFN5799351.1"
                     /translation="MFHATTILAYKGKNKSVIGGDGQVSFGNTVLKGNAVKIRKLNNG
                     KVLAGFAGSTADAFNLFDMFENLLQSSKGDLLKAAIDFSKEWRKDKYLRKLEAMMLVL
                     DRNHIFLLSGTGDVVEPEDGQIAAIGSGGNYALSAARALAKHASLDEEELVKSSLQIA
                     GEICIYTNTNIKTYVIEDEK"
     gene            19447..20766
                     /gene="hslU"
                     /locus_tag="ACHFOB_000534"
     CDS             19447..20766
                     /gene="hslU"
                     /locus_tag="ACHFOB_000534"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009376 - HslUV protease complex
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HFN5799352.1"
                     /translation="MNLTPKEIVKFLDDYVIGQKKAKKIIAIALRNRYRRMQLSPELQ
                     DDIVPKNILMIGSTGVGKTEIARRLAKMMGFPFIKIEASKYTEVGFVGRDVESMVRDL
                     ANAALNLVKNEQREKNKDKIDEFIENKILEKLLPPLPKGISDEKQEEYKNSLEKMRTK
                     LRNGNLDESTIEIEISQNMFDTNPNLPPEMGAMQDIVKVIGVGSKKVKKEMKIKDAKN
                     ALKNEAGEKILDQESIKSEALKRAENEGIIFIDEIDKIAVSSGNSNRQDPSKEGVQRD
                     LLPIVEGSNVQTKIGTLKTDHILFIAAGAFHLSKPSDLIPELQGRFPLRVELDSLDDK
                     ALYEILTRPKNSLLKQYSQLLKTENLELEFDDEAIKEIAKIASRANEEMQDIGARRLH
                     TVIEKLLEDLSFEADEYAGKKFVVDKKMVEEKLGDIIENKDLARYIL"
     gene            20763..21638
                     /gene="era"
                     /locus_tag="ACHFOB_000535"
     CDS             20763..21638
                     /gene="era"
                     /locus_tag="ACHFOB_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HFN5799353.1"
                     /translation="MKSGFVSIIGRTNAGKSTLINSLLEEKIALVSHKQNATRRKIKA
                     IVMHEKNQIIFIDTPGLHESGATLNQLLVQSAIKSIGDCDVILFVASVFDSTKDYENF
                     LSLNPQVPHIIALNKVDLTDNATLLKKLSEYAKFSQHFKAIIPYSSKKKSYKKGLLDE
                     IVKYLDEHEYFYDPEFLSASSEKELYRDFILESIYENLSDELPYSSEVLINRTKDTPN
                     LLILEANIITDTNSHKGMLIGKEGATLKRIGKDARFKISKLAQKKVLLKLFVTVKKNW
                     QKDEEFLKKLLNDEN"
     gene            21625..>22219
                     /locus_tag="ACHFOB_000536"
     CDS             21625..>22219
                     /locus_tag="ACHFOB_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799354.1"
                     /translation="MMKINSLNKINFIKSTDLLYAQRTGISKEDELFNNLTADFKLSK
                     PFDYQIAFFKHNEIYHCFLAPVYKLKKSRFCFPEPLIFQALFDERFIEESDYCVLNLY
                     DQTLYLYFYQEGKFINLKKIENFNPSNMDLFFKQNRFIELLKHYESKLLLYQDLDTIK
                     HYFSSQIKCLNLNDILDKNSLLKLSSYSIKNLDQNCNF"
BASE COUNT         8074 a         3795 c         3119 g         7231 t
ORIGIN      
        1 actctatata aaaaataacc taactccaac cctagctcaa attcttttac aagctttaaa
       61 aaattcgaat aatgaaaaat tttttacctt tgttttgaaa aatattgaaa caatttgcac
      121 ttggctcaat tctaacgaat ttagggatag atatttatca acaaaacatc cttatccgcc
      181 tttaatcaat cctaatttta tagaaataga ttctagtcga cattgcgcag aattagcttg
      241 ggatttaaat ttacccctac ctaaacacta taaatttatc tatatttctc cacatggcgt
      301 tggagcagca gcatttttaa gataccttaa tcaatgttgc gatgtaactt gttttgcctc
      361 ctgggtttta ccacctgata gcaaagagag atattgtatt aattacatgt gtctaaatga
      421 taatacaatt gctcaatatg ctattaatat atcagaaatt aatctacctt attttgataa
      481 atatctatct ttattagatt ttaattctaa gattatttgc ggagttcgag atccaatagg
      541 acttttaaag catagctggg gaagagattg gagtaaagtt ttaagaaact atccccctga
      601 atttaatcta acttatgatt ggcgttatta catcaactat cttattcatc aaaatcataa
      661 aattaaaatc gatataaatg aactacaaca aggagttttt atcatctctt atttattaaa
      721 atattttaac aaagacaatg tatactatct tgatatggaa gaaatccgcc aatcaaaggc
      781 cttctatacc atgaatttac ttgctataaa ttttaatttt acccccccca taaagataaa
      841 ttagatttat ttaaaattaa agaatttaga ggttatattc gctatctttt tcctattaca
      901 ctttatgcaa attctaaaga tattaataac accttttatc ttaatactcc taaaaataat
      961 aaaaatttca atattgatag aacttctagc attcccataa ttttagacag aaaacatatc
     1021 aatcatgaaa aaatagacat aatacaagaa attataaaaa acgacctatg taatgatatg
     1081 ggtgtatata ttgataaaaa tgattttaag caattagaac aaaataatct tttattttca
     1141 acaattaaac attatttgta tgatttttta tatcaaatta aaataaccat agatgaaaca
     1201 gaatcaaaaa tgatgaaaga aaaagatgta atagattatt ttataaaaaa taaatcactt
     1261 atttacactt tttttaatat atttgaaaat gaactaaatc atttaaaaca aacacatcct
     1321 catattattg attcttggaa atattataaa gaatttgaaa aaatatacaa agataaataa
     1381 tcatatcact tacacaaaat caataggatc aatatccgca cttgcatttt taaattgcaa
     1441 aatataattt tcaattgcca ctaaagcttt atgattttca cttctaagca acaaataaaa
     1501 acgatatttt ccatacagca tttcaactcc acaaattcca tagcctacca attctacctg
     1561 tttgatattt ctaaactgag aagcaaattt ttcacaaagt ttttgtgcat ttttttgatc
     1621 tttatcttct ataagaactc ttaaaaggcg tttaaatggg gggtaaagat cttttctatt
     1681 ttctaactca tcttttaaaa aagcatcata attctctata tacctttcaa aaaaagctct
     1741 attttttgtt tgcaaaagta cccttgcttc gcctttacgc cctgccctgc ctgcaacttg
     1801 catagctaaa gctaaagttt cttcactcgc tctaaaacta ggacgcaaca aatattcatc
     1861 aagccctaaa atcacactca aatccacact atgataatca tgtcctttag caagcataga
     1921 agtgccaata agtatatcga tcttattttc attaaagttt tttaaaatag tattaagctt
     1981 tttaacgctt gtgatttcat cgctatcaaa ttttgctatt tttgctaaag gcaaagcatt
     2041 ttgcaaaagc tctaaaagtt cagcagtccc aatttttcta gcttctaaca tttctccttt
     2101 gcaacttgga caattttgct ctattaaaga agtataatta caataatgac attttaaaat
     2161 atttttcttt ttatgcatac tcatagcaat agaacaaaaa ggacatttta tcgtttctcc
     2221 acaatccttg caaatgattt gcctaaaatt agcccttgta ggtaaaaaca ctatagcttg
     2281 tttttgatgt tttaaacttt tttctaattc gcttaaaagc ataggtgtta tactgagctc
     2341 attttcatca tataaaaaat gttttttact ctcaaaaaaa gttcctttta gtctaaaact
     2401 tttttgttta taaaagctcg ttaaagatgg ggttgcagaa cctaaaacca ctttaatatt
     2461 atttttttga cccaaaaaaa gtgctaaatc tcttgcattg ataaaaggct ggttagaagc
     2521 cttataagaa ttatcgtgtt cttcatctac tacaataagt cctaaatttc taaaaggtaa
     2581 aaacaaagcc gatcttgcac ccgctactaa aagcacttct cccttgcaaa aacactctaa
     2641 atattcttgc ttttttttct ttgaaatttt agaatgccac aggaaaaaat tatccttaaa
     2701 atatacttct aaacgctttt gcatttgtgg agtaagtgcg atttctggca tcaaaagtaa
     2761 agcttgctta ccctgttcta aacactcttt tattaaagaa atataaattt cagtcttacc
     2821 actacctgtg tcagcaaaaa gcaaagaatt attttctttt tgaaggaaac ttaaggcatt
     2881 ttgttgttga ttgcttagct taggggtatc tttaaaaaac attttttgac attcatactt
     2941 aggactagtt tcgaaaaagc ccaaaacaaa accaagtttt gaagcataat aataaacaat
     3001 aaaatttgcc aattcaagtt gcaaaggagt tagaaaatac tttgtaattt ctttaatttc
     3061 tatagtttta aaatcaggtt tttgacattc tttaagtacg atggctttaa gatttttttt
     3121 agattttaaa tccactaata cctgtgttaa aggtttgatt tcatcaaaac tatgaaaagt
     3181 taaattatcc aaatacaaac cacaaattgc aagttcataa tatcttatat cagatctttg
     3241 catctagaac ttcctataca ctttaacaaa ccttctttag aatcataaat aaattcaacc
     3301 atctctttag catttaatgc aaatctatag tgatttttac ctatttttat ccaagattta
     3361 aaatcagaat aaataggtgt atcaagcaaa gaataatcac aatcatttaa acaataaaag
     3421 agtttttctt tggcttgatt gttttgcgca ttatctaaaa tttctggaaa atttaaattt
     3481 ttaagtctca tttgactacg cattaaagca agagctgagc ttagcatttc atagtccatt
     3541 tttaatttta aaattttaac ctcatctttt gtagtattga taaaagataa agataagctt
     3601 gaaaaaattc ccaaaatcaa aatcacaaaa acaagctcaa gcagagtaaa agctttattc
     3661 attttgtcgg gagttcttca ttgattgctt ttattagttt cttaagttct ctttctagaa
     3721 tataattttc ataacttttt ttaacaaacg catctacaaa gcgtttaagt tctatttttt
     3781 tagtaccccc tgaaatcaaa gcgatatcat cttctaaaaa atttgcaaat tcttcactgc
     3841 acttaacaat gaaatctttt gcattaacat taacaatgac ttgttttaga ttatctccca
     3901 agaacagcct ctattttctt ataaatatct tcgctttcta tattgcgaga tttaagttct
     3961 tcttctaaac gcatgatttg attacttttt gcttcatttt gtgctttaac gcttacaagc
     4021 tcatttctta aagcctcatt ggcttcgcaa acttcgttat acttttcaat taattcattt
     4081 actttatctg tcatagtatt gattattttt tcatcaaaca tatttttgcc ttcttaaaaa
     4141 atttgtaatt tatggaaaat attatttgat attgtagcag aaaaaaattt aaatttaggt
     4201 ttttattgtc aattaatttt taattaaagc attttctttt aaaatttttt caaaaataaa
     4261 aataaagtag aaaaatgtta gaacttacca gcgaatttaa acctagtcct gatcaacaag
     4321 aagccataaa aggtatagta aaaagtataa aaaaaggcaa caaatatcaa accttactag
     4381 gcgttacagg aagtggaaaa acctttacca tggcaaatgt cattaaagaa cttaatatgc
     4441 ccactcttat catgagtcac aacaaaagcc tttgtgcaca actttatagc gaatttaaag
     4501 gctttttttc taaaaatcat gtggaatatt ttatatctta ttatgattat tatcaacctg
     4561 aagcctatat tccacgcact gatgttttca tagaaaaaga cagctccact aatgaagact
     4621 tagagcgttt aagactgagt gctactgctt ctcttttaag ttatgaagat gtagtttgca
     4681 tagctagtgt ttcggcaaat tatggacttg gtaatccaaa tgaatacata ggcatggttt
     4741 taatctttga actaggtatg caaatttcac aaaaagaact tttaaaaaaa cttgtagata
     4801 tgggttataa aagaaatgat aatttttttg atcgtgcaga ttttagagtt caaggagata
     4861 ttatagacat ttatccagct tattatgaag atgaagtagt aagacttgaa ttttttggcg
     4921 atgagcttga tgctatgtat cattacaatg ttttagaaaa taaaaaaggc aaagatttaa
     4981 aacgcttcat actctatcct acaagccagt ttagtgtagg tgaaacaagg ctaaaacaag
     5041 cgataaaaga cataaaagca gaacttaacg aacgccttgc ttattttgaa catgaaaata
     5101 aactcgtaga atatcaacgc cttaaacaaa gggttgaatt tgatcttgaa atgcttacaa
     5161 gcacaggaat gtgtaaaggc gttgaaaatt atgcaagaca tttaacaggg cttaaagaag
     5221 gtgatattcc ttatacgctt tttgattatt ttgcgattaa agatagaaaa tttcttgtta
     5281 tagtcgatga aagccatgta tctttaccac aatttagagg tatgtttgca ggagatagaa
     5341 gcagaaaaca aaccttggtg gattatggtt ttcgtttgcc ttcagccttg gataaccgtc
     5401 ctttaatgtt tgatgaattt atccataaaa attgtcaatt tctttttgtt tcagccacac
     5461 ctgcaccttt agaacttgaa ctgagtaaag aaaacatctt tcatcaaatc atgcgtccta
     5521 cgggactgct tgatccttta atagagttaa aagatagtga taatcaggtt gaatttttat
     5581 ttgatgaggc taaaaaagtc atacaaagga atgaacgtgt tttagtgact gtgctaacta
     5641 aaaaactcgc tgaagaactt acaaggtatt atttagagct tggtataaaa gtcaaataca
     5701 tgcactcaga catcgatgct atagaacgca atgaaatcat aagaggttta agaagcggtg
     5761 cttttgatat gctaattggc attaacttac ttagagaagg actagatcta cctgaagttt
     5821 cactcattgc cattatggat gcagataagg aaggcttttt aagaagcact acaagtttaa
     5881 tccaaaccat gggaagagca gctagaaatg tcaatggtaa ggttttgctt ttttgcaaaa
     5941 aaatcacaaa atccatgcaa gaagctatgg ataccaccaa tgaacgccgc aaacttcaaa
     6001 tggcttataa taaaaaatac aatatcacgc caacttcagt caaacgccat attgaagaga
     6061 gtttgaaaaa tgaagaggat ttaggcgaaa tttatcgcaa aggtaaaaaa ctcgaaaaaa
     6121 tgcctgctag cgaaagagca aagcttgtca aagagttaag aaagcaaatg cttgaagcag
     6181 ccaaagcact tgagtttgaa aaagctgccg caattagaga tgagattaat aaattaaggg
     6241 atttataata aaaatatatc ccttgttcta actcctacct cattaagtaa agcacttaaa
     6301 atttcatact gaaagtcttg caagggacgt ttttctttta aaactatacc tatgacccct
     6361 ttagtttttt ccccatcttc tataggtaaa tacatagcat tagcattagg cagggtattt
     6421 gtacaaacac ctgctctttc tttatttgtt gcaacccatt gagcaatagc aatctcatca
     6481 gcactaaaac aattttttaa catttgctta tcatcgttaa aaaacaacaa aggtttcgat
     6541 aaaatattgt ttttatttat aggataaata ataataggta aatttaataa ttttaaagct
     6601 tgatttccaa gttgttccca aagctcttgt ttgcttttca ctcttgctaa cttttcacta
     6661 ttttcaagca aaatagccgt tctataagct cttttagtga gttctttaga ttgcaatttt
     6721 aatcttctag taaaaacagc tgttaaaaat ccaactataa acatagttgt aaaagtaata
     6781 atatttccac tatcatgaac tttaagacta aaaataggtt ctaaaaagaa aaaattataa
     6841 atcaaaacac ttaccaaaga agaataaaag gcgaaaattt tattatcaga aataaaagaa
     6901 gaagcaaaaa ctgctaaaat aaaaatcata actatattac ttggctgagt attaaattta
     6961 tgaaatacaa aagctataaa agttgctaaa agcaaaactc ctgtgatttt taaaaaacct
     7021 aaaaaatcaa aacctttttt acttcgtatt ttaggagtag aaatttgatt ttcattaaca
     7081 agatataaat caatattagg tgctttttta gcaacagctt caaaaatctc ttctttaaac
     7141 ttttttttat ctttattttt acctaaaaca attttagaaa cattgctaag gcttgaatac
     7201 tctgcaattt gtcttgctat atcatcatat acgctaatga tttcagcatc aaaactttta
     7261 gctagttcta tattttcttc taaggctttt tcttctttaa tattgggatt ttttatataa
     7321 agcgcactca atttagcatg aaaagctaaa gcaagtcttg cagctgcacg aataaccttt
     7381 gcatttgaag cattaataca aactaaaata tgctctccag tatgataagc taaatcatca
     7441 ttaataagcc tttgttcact tgctcttaaa ttcactcttg aagcaagtct tcttaaggca
     7501 atctcacgca aagctataag tctttcttga cgaaagaaat tttcaagtgc tagtttagct
     7561 tgtttttcct tataaatttt accatcttgc attcttttta aaagcttatt aggttcaata
     7621 tcaacaagtt caacctgatc agcctcatca aaaatacgat caggaatacg ctctttaact
     7681 tctatcttac tgatattagc gactaaatca tttaaacttt ctaaatgttg tatatttaaa
     7741 gtagtataaa catcaatccc tgcttttaga agttcttcta tatcttgaaa acgcttttca
     7801 ttacgcaagc ctttagcatt agtgtgtgca agctcatcta ctaaaaccaa agcaggtttt
     7861 ctcttaagag tagcgtctaa atcaaattct tttaatacta tatttttata aggaatttca
     7921 agattagcta tactttcaaa accttgtgtt aaagccattg tttcaggtct atcgtgaggc
     7981 tctatatagc ctaaaacaac atcaactcca ttatccctta aagttctagc ttcacttaac
     8041 atagcataag tttttccaga acctgcagca taacctaaga agatttttaa ttttgcaagt
     8101 ttgttttttt cttcttcctt ggctttaacc tcaagttttt taagaatttg ttcaggactt
     8161 tgtctttgca tgtttattct tttttcatgg ctttagcaat agctatatta acagctaaaa
     8221 cattaacctt ttcttcccca aaaatcccta aaaatttaga ctcggtattt tcttgaatga
     8281 ttttttctag ttcttctttg gtaatttttg aagattgact tatcctagga atttgcacta
     8341 gggctgcttg aagactgata tgaggatcaa gtcctgatcc cgaagcgctt aacaaatcca
     8401 aaggaatttg ttcttttgta atttgcggat tctcatctaa aaatttttgc aaatcttttt
     8461 gcacacgctc ttttaaagca ggatttgaca tagcataatt aaatccacct gaacttacac
     8521 tgctttcatt tgtatcactt gtattgtaat ttgatacaga tgctcttgaa tgtagaaaat
     8581 aaggcttatt aaaatcttga cccaaaagct ttgaacctac cgctttgctt atatccaaag
     8641 tcggacgacc ttctttatcc actaaacttc cacttgattg ataaggaaaa ataaattttg
     8701 caaccgtatt taaagcaaaa ggataaataa gagtacataa tattagcatt accacaaaaa
     8761 aactaagcaa agttctaagc atatcacact cctaaaattc taagtatcca agctgtagga
     8821 atatcaatta tttttatccc tataaaaggt gctatcatac cacctaaacc ataaatactt
     8881 aaatttctta aaagcaaatg ctcgcttttc ataggcttaa atttaactcc acgcatagca
     8941 ataggtatga gcaaaggtat aataatagca ttaaaaataa gtgctgataa aatagcgctt
     9001 tgcggggtag ccaaatgcat aatgtttaaa atttgcattt gaggtaaaac cacactaaac
     9061 atagcaggta aaatagtaaa atacttagca atatcatttg ccatactaaa agttgtaaga
     9121 ctgcctctag taataagcaa accttttcct atttcaacca cttctaaaat tttagtagga
     9181 ttagaatcaa gatctatcat attggctgct tctttggctg cttgagttcc tgagttcata
     9241 gctataccta catcagcttg cgcaagagct ggagcatcat tggttccatc tcctgtcatg
     9301 gctactatct taccttgggc ttgttctttt ttaatggctt ctattttatc ttcaggcttg
     9361 cattctgcta taaatccatc aagccctgct tctttagcta tagtagctgc tgttaaagga
     9421 ttgtctccag tacacattaa agtttttatg cccatttttc taagctcatc aaagcgctct
     9481 ttaagtcctg gttttactgt atcctttaga taaattactc ctaaaatttt ttcattttta
     9541 cacactacca aaggagtacc accaagattt gaaatttcca ttaccttagt ttctaaatcg
     9601 ctaggaattt ttccattcat ttcgcttata taagctctta tagcatcaaa agcacctttg
     9661 cgaatttttg tattatcttg caaatccaca ccactcattc tattttgagc gctaaattcg
     9721 ataaattctt taatatcatt accttctaat tcataaccca ttttttgagc caatgcaact
     9781 atgcttttac cttctggagt ttcatctttt aaagaggata aaacacaagc tttaatcatt
     9841 tcttctttac ttataccttg gacttcataa aattcatttg ccaaacggtt tccaaaagta
     9901 atcgttcctg ttttatccaa aatcatagta tcaacatcac cacaactttc aacagccttg
     9961 cctgaaagtg cgatcacatt aaaacgcgtt accctgtcca tacctgctat tcctatagct
    10021 gataaaagcc cccctatagt tgtaggaata agacatacaa gcaatgctac taaccacgaa
    10081 ataggcaaac tcacgcctaa aaattgcata aaaggatata aacttacaac caccaccaaa
    10141 aaactcaaac taagaacaat taaaagagta ttaagagcaa tttcatttgg agttttttga
    10201 cgcgcagcac cttctacaag attgatcatt ttatctaaaa aactttcccc agctccaact
    10261 aaaattttaa tctttaaaaa atcagttaaa accgtagtcc cacctgtaac agaagaaaaa
    10321 tcaccgcccg cttcacgcat aacaggagca ctttcacctg taatagctga ttcatcaaca
    10381 cttgcagcac cttctataat ttctccatca ttaggtataa gttcacctgc tttaactaaa
    10441 actatatcac ctatttttaa ctcgctagaa ttaagcattt cttcactgcc atcacttttt
    10501 atgcgtctag ctttagaatc ctttttgctt tgtcttaaag tagctgcttg ggctttaccc
    10561 cttccttctg caatactttc tgcaaaattt gcaaaaagca aggttataaa taaaataaaa
    10621 gtgattaaga tgttataaat tctttcatca gaatttccat taaacaaagt aggaaaaata
    10681 cttaaaatca aagtaagaat caatccaact tccaccataa acataacagg attttttacc
    10741 ataaagcgtg gatcaaattt taaaaatgct ccttttatgg cattatttaa aatttctttt
    10801 gtaatgagtt tattttgttt tttagacatt gactctcctt aatgccataa agataaatat
    10861 tctgcaacgc ttgataaagt aagcactgga aaaaaagtaa gtgcagcaaa aatatatata
    10921 atacaaacaa gcacaaacat aaaagttaaa ttatccgttt ttaaagaatt tgcagtattt
    10981 tcttgtgtat ttttagccaa aagcgatcca gctatagcaa gctgagctat taaaaccaaa
    11041 taacgcccac aaaacatagc aaaagctgta cttaaattcc aaaataaatt atcatctttt
    11101 aaaccttcaa gtcctgaacc attatttgct gccgaagaac taaattcata caaaatctga
    11161 gccaagccat gaaagctagg attgcttata ctatcttttg caaaaacaac agctaatgca
    11221 cttaaaacaa ggattaataa aggatggata agaattacca aagctataag cttcatttgt
    11281 gcgctttcta tttttttacc caagaattct ggagttctgc ctatcattaa tgcacaaata
    11341 aacacggtta aaagcacata aataatcata ttcataagcc ctactccttc gccaccaaaa
    11401 gccacattta acatcatatt tagcaaagta gcactgatgc ttaaaggatt taaactatcg
    11461 tgcatattat tgacgcttcc tgtagtaaaa gcagtagtta cagcactaaa taaactcgaa
    11521 ccatctgtgc caaatcttat ttctttacct tctaaatttc ccaaatttgc atttaaaccc
    11581 aaagaatcca aatttggatt tgacattttt tcgctaaaat aaattaaaag caaagaaatg
    11641 ataaaaataa tccccattgc accaaaaata actccccctt cttttcccat aagagcaaaa
    11701 ccttgtcttt cttttctatg ataaaccatc aatccaaaag ctacaacaca ggcactagga
    11761 ataagcatca tggataaaat ttgtaaaaaa tttgtaagtg aagtaggatt ttcaaaaggc
    11821 atgcttgaat tagcaccaaa aaaaccaccc ccgtttgtcc ctaaatgttt tatagactca
    11881 agagctgcaa caggacctgt ggcaatgctt tgaaatttat tttctaaagt aagcacgcta
    11941 aaatttgcgt gatagttttg caccacgcct tcagagataa aaattacagc caaaataaaa
    12001 cttaaaggca acatcaaacg cgtaataata cgcgtaaaat cttcataaaa atttcccatt
    12061 tgcataccac ataaagcacg acaaaaagcc atacaagcag aatatccact tgcacttgaa
    12121 acaaacatag caagtaaaat gcctgtattt tgggaaagca aacttaaagc actctctcca
    12181 ctataatgct gaaggtttgt atttgtaata aaactaatta cagtatttaa attcaaatcc
    12241 cctttcatag aatttatcga attgggattt aaaaaaagtt tatcttgcaa ataaaaaatc
    12301 acgaaagaaa aaatagccac taaggcatta aaagcaatta aatgcaaaga atatttttgc
    12361 caagtcatat tttttctatc aattgcacaa attttataaa ttaagttatc aattggatta
    12421 aaaataaaat caaaaatagt tttgttacag cttgcaattt tataaagata atttccaaaa
    12481 attaaagcca atataaaagc tataatcagt gttattaaaa tttctagcat atttttcctt
    12541 taaaattttt caggatataa tagagcataa aataaataaa gagcaagtat taagcttaaa
    12601 actagtaaaa atatcatccg cgtgtcctag tttgaatttc acaaaaacgg ataaaaaacc
    12661 ataaactacc aaaagctaaa agcagaagca aagcaaagat aacatccata ggatagccct
    12721 ttctcattga ttcaaaatag gatttattct atccttgtta agcttatatt ttgattaata
    12781 ctaattttat gatttattta taatttttat ctatattaaa taaaaagaca aatgaagaat
    12841 ttagcaggaa aaatcctgct aaaaattgtt aaagataacc tgctgccata gcgataaaat
    12901 atcctgctat acaagaagtg attacaccta taagacctgg taaaataaaa ctatgattga
    12961 taacaaattt accgatgtga gtagtacctg atctgtcaaa ttgtatagta gctaaatcgc
    13021 ttggataagt tggtaaaata taatatccat aacaagcagc cgcaaaagca acaattacac
    13081 caggttcaac accaattcct aaagccaaag gaacaaaagc cgaaatagcc gctgcttgag
    13141 agtttacaaa ttttgaaatt aaaagaagca ttacagcata agtccaagga tgctctttta
    13201 ctatatctcc aagcgctact ttcatcatag gagtatgaac tgcaaacata gtatcagcca
    13261 tccaagaaat tccaaatacc gcaacaagtg ctatcatacc tgatttaaaa atttcattag
    13321 agccgatttt ctttgcatct gttttagtaa agatgataat caaagaacct gctaaaagca
    13381 taaacatctg aataactgaa accatggata aaacatccat tttaggattg cctaaagcat
    13441 ctacttgagg aatgccattt tttacaactt gcccccagtt tggacgcaag aaatcaaata
    13501 cacctaataa agccactaaa gcaatagctc ctaagaaaat ccacattgca acccaattac
    13561 tttttgggag tttaacacct aaaagtgttt tagaatcccc ataaacatat tttttaaatt
    13621 caggatcttt aagtttttct tgaaatactt catctttatc caaatctttt cctctaaacc
    13681 aagaaaaaat tcctatacac aatacaccaa ataatgtact aggtatggta atttgaagaa
    13741 gattaatata accatcaaaa cctgctaatt tatgattagc atttaaaagc aaagcagtca
    13801 aacttacaac agccacagat acaggagatg caataatacc catttgtgat gatatagaag
    13861 ctgctgccat tggacgctca ggacgaatac cgtttttaat cgctatatca taaataatag
    13921 gcataatagt ataaaccaca tgtcctgttc cacaaagtat ggtcaaaaag caggttacaa
    13981 aaggcgctaa tattgttaaa aacttaggat tgcgtcttaa aattctttct gctatttgaa
    14041 gcataacatc caaaccaccg cttgcttgca aagttgcact cgcaaccact accgctaaaa
    14101 tcgtaagcat aacatctatg gctggttttc caggctttat atgaaaagca aatacaagca
    14161 ttaaaatacc tataccacca agtaaaccaa gcgctatgcc gccttttttt gcaccgtaaa
    14221 aaagacaaat taaaacgata atgatttgga ttgcaaattg ccctccctca ctaaggcttg
    14281 ttaaaaagtc cattttaact cctttgaaaa ttgatattta aaaacagtta ttattgtatc
    14341 acatttttaa attaaagaat aatatttcta aaaataaaac aataattttt tatattattt
    14401 aaattaaatt taaatataaa acaaaagtgt aatgggtttg atagattgat agaattttat
    14461 ccttcaagtt catataattt ttttctatcc gtagaacttg ctatattgag atgtttgcga
    14521 tattttgtaa tagttcttcg ccctatatcg actttaaatt cttctttgat taattctaaa
    14581 attttactat cgcttaaagg tttattgcga tcttcattct ttactaaatt tgctacaaat
    14641 tctttaacac ctacatttga agtctctccc tcttcatcaa gagcaaaagc aaaaaaatca
    14701 cgcaagggga taagtcctct ttcacaactt aaatatttat ttgccacagc tcttgatata
    14761 gtcgaagcat tgcgttctaa atcaagtgct aaatccttaa aagtcatagg ttttatctct
    14821 tttcccatga aaaaatcata ttgatattct actatcataa gccctatttt ataaagagta
    14881 gcttttctca tcgctaaagc atcaactaaa ttttttgctt ctttgatgta atgacttaaa
    14941 aaatcatgct ctaaaccatc agtttggatt gaaatttcag gataataatc atcattgatt
    15001 tttactttaa tttcaccatt ttctttataa acaaaaatat caggaacaat tatacgagaa
    15061 tcttcaaaat attccaaaaa aggaggagtg ctaaaacgct taagtacagc caatgcttct
    15121 ttatataaag gctctttggt atagttttgt atattttcaa aatccataat caacattcta
    15181 caaaactcat caatatcttc atctaactcc atattttcaa gagcaaataa aaatgcttct
    15241 ttataatctt tagctcccac tcctacagga tctaaaaatt taaatcttgc tcttactcgc
    15301 tcaatttctt ccaaagaata ctcttttaaa aattcttcat cgtattcaaa atatccttcc
    15361 tcatttaagc attctataat tttttttgca agttcttgag atttgtttgt aggaaacaaa
    15421 ggaggaagaa tctgttcatt taaaagctca taaacacttt ttttggcaag tcctttacta
    15481 tccacaaaag ccgaatttac attatgttta taaaatgaat caaaataatt cttaccctta
    15541 tcatgagttt gtatcgaatc ttgaacattt aagaaaggat tatcctcagc aaatttatct
    15601 aaattttctt ttaaatcctc tatatttgct tgtaaaatcg gcaaccaaga gcgtaaagtt
    15661 tgagaaattt tagtcttggg tgcttgggtg attttttgct ttaacatcaa tcaaggagtt
    15721 taaactccgc tcctaaataa tactttttca cgtctttatt ggttgcaatt tcatcagcat
    15781 ttccactagc aagcaaagaa cctgatctta taacataagc tctatcacaa atagccaaag
    15841 tctcacgcac attatgatcg gtaattaaaa ccccaatccc caatctttta agctctttaa
    15901 ttaaagtttg aatttcagcc actgctatag gatcaacacc tgcaaaaggc tcatcaagaa
    15961 gcaaaaactt aggttcgcac atcaagcttc tagcgatctc acaacgcctt ctttcacctc
    16021 cacttaaact taaacctttc cttaaacgaa taggctctat acttaagagt tcaagcattt
    16081 gctcaacttt atcatgtaaa atttttttat ctttataaaa aatctgagcc gctaaaagca
    16141 ggttatcttc tacgcttaaa tccttaaaaa tactactttc ttgaggtaaa taacctatcc
    16201 ctgatctagc tcttttattt aaaggatctt ttgtcacatc taaaccatct aaaagaactt
    16261 ttccactact tggggaaata agtccacata tcatataaaa agttgtcgtt tttcctgcac
    16321 catttggccc taaaagtcct acaacttctc cgctattaac ctctaaagaa attccatgta
    16381 taatcttagt ttttttaata attttttcta aatttacaat ttctaattta ctcataaatt
    16441 tcatactttc ttttgtcgtc tttaatgcta attttaatct ggatagtaga aattccaaat
    16501 ttcattaaag tttttttcaa attttcaccg ccccattcaa ccaaatgcaa acctttttca
    16561 aaaaaatttt caaataaacc attcgctaaa agtccttcta aaccttcttg ataaatatca
    16621 taatgataaa tgcaaatatc atgattttca tatttttgca tagtggaaaa agttggagaa
    16681 tctacccttg catcaagacc aagaaattta acccaagctt gtactaagct tgtttttccg
    16741 ctagccaaat ctccttgaag caaaacaaca ccttctttag gcattatttg aagcatcgtt
    16801 ttgatctcat cttttgctaa aataaattct ttcataattt taccacatat tcattttgtg
    16861 cgtttttagg aatgcttttc gtgctaggta tagctaggac tttatatttt tgagtgtatt
    16921 cagtaaaatg taaagtgatg atatcaccca ccttaacctc tttactcgcc ttaacaataa
    16981 cgccattaat ccccactaca ccacttttac acatatcttc agaaatagct cttcttttcg
    17041 tgatattaac tacatttaaa aatttatcta ctctcataaa agcaatttta gcaaaaaaaa
    17101 tcaatttttg gaacaaaatt tgcttatgcc tttgctttat tttttaagaa aatagcaagt
    17161 aaaaactttt ctttaatgaa atttggatac aattttacaa ttttcaaatc tattttaaca
    17221 aaggatatct tatgaaaaat gaagtaaaaa aagtagtttt agcgtattct ggggggcttg
    17281 atacgagcat tattttaaaa tggcttcaag atgagtataa ttgtgaagtt gtaactttta
    17341 cagcagatat tggtcaaggt gaagaactcg aacctgcaag aaaaaaagcc ctttctttag
    17401 gcataaaaga agaaaatatt ttcattaaag atttaagaga tgaatttgtt aaagattatg
    17461 tatttcctat gtttagagcc aatgcgattt atgaaggaga atatctttta ggaacaagta
    17521 tagcaagacc acttatagca aaaactcaag cacaaatcgc cctgcaaaca ggtgctgatg
    17581 cggtaagcca tggtgccaca ggtaaaggaa atgatcaagt gcgttttgaa cttggctatc
    17641 ttgcttttaa cccagattta aaaatcatcg ctccatggcg tgagtgggat ttaaacagtc
    17701 gtgaaaaact ccttgcttat gcgcaaaaac acggtattga tatttctaag aaaaaaggaa
    17761 aatcccctta ttctatggac gcaaatttac ttcatatttc ttacgaagga cttgttttag
    17821 aagatcctgc acacgcacct gaagaagata tgtggagatg gagtaaaagc ccaaaagacg
    17881 ctccaaatga aagtgaaatt atagaacttg atttccaaaa aggagattta gtagcgataa
    17941 atggagaaaa actaagtccc gcaggacttt taaccaaact taacgaacta ggctgcaaac
    18001 acggtatagg acgccttgat atagtagaaa atcgctatgt aggaatgaaa agccgtggtt
    18061 gttacgaaac tccaggcggt actatacttt taaaagcaca cagagcgctt gaaagcatca
    18121 cgcttgatag agaagcagca cacttaaaag atgaactcat gccaaaatac gcaagtttaa
    18181 tttataatgg ctattggttc tcgcctgaaa gaatgatgct tcaagcctta atcgatgagt
    18241 ctcaaattca tgccaatggt agagtaaaac tcgagcttta taaaggcaat gtgatggtta
    18301 taggacgcga aagtgctaac gatagcttgt ttaacgcagc ttattgtact tttgaagaag
    18361 atgaagtgta taatcaaaaa gatgcagcag gttttatcaa gcttaatgct ttgcgtttta
    18421 tcatcgcagg aaaaaatgga agaaaatttt aataaaggaa taaaatgaaa gtattattaa
    18481 tcaaagatgt aaaagcactt ggaaaagcag gcgaagtaaa agaagtaaaa gacggttacg
    18541 gacaaaattt cttaatcgcc aaaggctttg ctaaagcagc tactaatgaa gtcttaaaaa
    18601 aatacgaaag cgacaagaaa aaagaggctg aaaatttacg ctttgaaatc gcaaatttag
    18661 aaaaactcaa agaagaactt agcaaaatca ctcttgaaat ttcaaaaccc gtaggtgcaa
    18721 atggaagttt gtttggtggt gtaaccaaag atgaaatcgc tcacgcccta aaagaacaaa
    18781 gccatataga aatcgataaa aaaagtttag aatgtgacac ttttaaaagt cttggacttc
    18841 atgaagtaag cgtaaagctc ggacacgcaa tccacgctaa atttaatata aatataaagg
    18901 cggaataatg tttcacgcaa caacgatttt agcttacaaa ggcaaaaaca aatccgtaat
    18961 cggcggagat ggacaagtaa gctttggaaa cacggtatta aaaggcaatg ccgtaaaaat
    19021 aagaaaactt aataatggta aagttttagc cggttttgca ggctcaacag ctgatgcttt
    19081 taatcttttt gatatgtttg aaaatctcct tcaaagttct aaaggcgatc ttttaaaagc
    19141 tgccattgat ttttctaaag aatggagaaa agacaaatac ctaagaaaac ttgaagccat
    19201 gatgcttgta cttgatagaa atcacatttt tttactttca ggcacaggcg atgtggttga
    19261 acccgaagat ggacaaatcg cagccatagg aagtggtgga aactatgcac tttcagcggc
    19321 tagagcctta gcaaaacatg caagtttaga tgaagaagag cttgtaaaat caagccttca
    19381 aatcgcgggt gaaatttgca tttataccaa tactaatatc aaaacttatg tgatcgagga
    19441 tgagaaatga atctaactcc aaaagaaatt gttaaatttt tagatgatta tgtcatagga
    19501 caaaaaaaag ctaaaaaaat catagctata gctttaagaa atcgctaccg cagaatgcaa
    19561 cttagccctg agttgcaaga tgatatagtg ccaaaaaata tcttgatgat aggttctaca
    19621 ggcgtaggaa aaacagaaat cgctaggcgt ttagctaaaa tgatgggctt tccttttatc
    19681 aaaatcgaag cgagcaaata tactgaagta ggttttgtag gtcgtgatgt agaaagtatg
    19741 gtaagagatc ttgccaatgc ggctttaaat ttagtaaaaa atgagcaaag agaaaaaaac
    19801 aaagataaaa tcgatgaatt tatagaaaat aaaattttag aaaaactttt gccaccttta
    19861 ccaaagggta tcagcgatga aaaacaagaa gaatataaaa atagtcttga aaaaatgaga
    19921 actaaactaa gaaatggcaa tcttgatgaa agcactatag agatagaaat ttcgcaaaat
    19981 atgttcgata ccaatcctaa cctacctcct gaaatgggtg caatgcaaga tatagttaag
    20041 gttataggtg ttggcagtaa aaaagtcaaa aaagaaatga aaatcaaaga cgctaaaaat
    20101 gctttaaaaa acgaagcagg agaaaaaatc ctagatcaag aaagtatcaa aagcgaagcc
    20161 ttaaaaagag cggaaaatga agggattatt tttattgatg aaatcgataa aatcgctgtt
    20221 tcaagcggaa attcaaatcg ccaagatcca agtaaagaag gggtgcaaag agacttactt
    20281 cctatagtcg agggatcaaa tgtacaaaca aaaataggta ctttaaaaac cgatcatatt
    20341 ctttttatcg ctgcaggagc ttttcatctt agcaaaccaa gtgatcttat ccctgaactt
    20401 caaggacgct ttcctttaag agtggaatta gatagtcttg atgataaagc tctttatgaa
    20461 attttaacac gccctaaaaa ttcactttta aaacaatact ctcagctttt aaaaactgaa
    20521 aatttagaac ttgaatttga tgatgaagct attaaagaaa tagcgaaaat agcttcaaga
    20581 gccaatgaag aaatgcaaga tataggtgct agacgcttac atactgtgat agaaaaatta
    20641 cttgaagatc taagctttga agctgatgag tatgcgggta aaaaattcgt agtggataaa
    20701 aaaatggtag aagaaaaact cggagacatc atagaaaata aagatcttgc aaggtatatt
    20761 ttgtgaaaag tggctttgtt agcatcatag ggcgtactaa tgcaggaaaa agtactttaa
    20821 tcaattcctt attagaagaa aaaatcgccc tagtttctca caaacaaaac gccacaagac
    20881 gtaaaatcaa agccatagtg atgcatgaaa aaaatcaaat cattttcatc gataccccag
    20941 gacttcacga aagcggtgct acgcttaatc aactgcttgt ccaaagtgct attaaatcta
    21001 taggggattg tgatgtgatt ttatttgtgg cgagtgtttt tgatagtaca aaagactatg
    21061 aaaattttct tagtctaaac ccacaagtac cacatatcat cgctttaaat aaagtagatt
    21121 taaccgacaa tgctacactt ttaaaaaaac ttagcgaata tgcaaaattt agccaacatt
    21181 ttaaagctat cattccttat tcttctaaga aaaaaagcta taaaaaaggc ttgttagatg
    21241 agatagtaaa atatcttgac gaacatgaat atttttatga tcctgaattt ttaagtgcga
    21301 gtagcgaaaa agaactttat agagatttca tacttgaaag tatttatgaa aatttaagcg
    21361 atgagcttcc ctatagtagc gaagtgctta tcaatcgcac caaagacacg cccaatcttt
    21421 taatcctaga agccaatatc atcacagata caaactctca caagggtatg cttataggaa
    21481 aagaaggggc aactttaaaa agaataggca aagatgcacg ctttaaaatt tcaaaacttg
    21541 cacaaaaaaa agtactttta aagcttttcg taacagtgaa aaaaaactgg caaaaagatg
    21601 aagaattttt aaaaaaactt ttaaatgatg aaaattaatt cattaaataa aataaatttt
    21661 ataaaatcta cagatttgct ttatgctcaa agaacaggaa tatccaaaga agatgaactt
    21721 tttaacaatt taactgcaga ttttaagcta agcaaaccct ttgactacca aatagctttt
    21781 tttaaacata atgaaattta tcattgtttt ttagcgcctg tttacaaatt gaaaaaaagt
    21841 cgtttttgct ttcctgagcc tttaattttt caagctttgt ttgatgaaag atttattgag
    21901 gaaagtgatt attgtgtttt aaatttatat gatcaaactt tatatttata tttttaccaa
    21961 gagggaaaat ttatcaatct taaaaaaatc gaaaatttca acccaagtaa tatggattta
    22021 ttttttaaac aaaatcgatt tatagaactt ttaaaacact atgaaagcaa attgctactt
    22081 tatcaggatt tggatacaat caaacattac ttctcatctc aaataaaatg tttaaatcta
    22141 aatgatattc ttgataaaaa tagtttattg aaattaagtt catatagtat aaaaaatcta
    22201 gatcaaaatt gtaatttta
//
LOCUS       DAZBIH010000017        20401 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.017, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000017 DAZBIH010000000
VERSION     DAZBIH010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 20401)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20401)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20401
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.017"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..715)
                     /gene="kdsB"
                     /locus_tag="ACHFOB_000537"
     CDS             complement(<1..715)
                     /gene="kdsB"
                     /locus_tag="ACHFOB_000537"
                     /EC_number="2.7.7.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008690 - 3-deoxy-manno-octulosonate
                     cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-deoxy-manno-octulosonate cytidylyltransferase"
                     /protein_id="HFN5799355.1"
                     /translation="MIIIPARLKSSRFHEKILCDIGGVPMFVATARRVSSVDEVCIAL
                     DDEKVLSIAKEYGLNAVLTSKDHESGTDRINEACKKLALKDDEIIINVQADEPFIECE
                     NLLKFKEFASSCLDKKAFMASCYKKITQEEAMDPNLVKVLCDKEGYALYFSRAKIPYE
                     RENYEESFKGHLGIYAYSVKALREFCSLSSSALERAEKLEQLRAIENGKKIKMLEIST
                     TSMGIDTKEDYERALKIYLE"
     gene            complement(712..2124)
                     /gene="thrC"
                     /locus_tag="ACHFOB_000538"
     CDS             complement(712..2124)
                     /gene="thrC"
                     /locus_tag="ACHFOB_000538"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HFN5799356.1"
                     /translation="MKLVESRNVNNVSSFKEALINPNAPEGGLYSPLNLPIFEGEKYA
                     NLSYKDFALKLIESFGFGEEELFKKALKSYESFDDKNTPISLQKISEKTYINELWHGP
                     TRAFKDMALQPFGVLLSEFSKDKNILIICATSGDTGPATLKSFENAKNVKVACMYPKG
                     GTSGVQELQMRALDKDNLKVFAIDEDFDAAQRTLKELLFSKDFQNEIKALNYELCAAN
                     SVNFGRILFQIIYHYYASLKLFNEFLEEVQIIVPSGNFGNALGAFYAKKMGAKISKIK
                     IASNANNILSEFFNQGVYDLREKSLKKTISPAMDILISSNIERLLFAKFKDKRTKELM
                     NLLKNERYFKLEKEELQSLQEDFEADFCTDEECMQFIKQSKILIDPHTATCFKMLDPL
                     KPSIITSTAEWTKFTPSMIKALYDRDSKNEKEDLKFIAKEFNVQVKDEILALFDLKNS
                     DEKVFEARNIKKEILDWMQK"
     gene            complement(2121..3047)
                     /locus_tag="ACHFOB_000539"
     CDS             complement(2121..3047)
                     /locus_tag="ACHFOB_000539"
                     /EC_number="2.7.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009029 - tetraacyldisaccharide 4'-kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetraacyldisaccharide 4'-kinase"
                     /protein_id="HFN5799357.1"
                     /translation="MSEEKNYELWLDNYFFKPNFWQKCLTFVLFPLSVLYAFFAILNT
                     FFRKKIVFKKPVISVGNLSFGGNGKTPLCKAIAREFDGVFIVLRGYKRKSKGLFVVKN
                     QNEILCTLAQSGDEAMEYAFEENIKGVIVSEDRVKGIEKAFELGAKIVVLDDAFSKFH
                     IKKFDILLESKIKPYFNFTLPSGAYRLPKIYEKRADFIALEGRDFVRYSFVKENPKAV
                     LVTAIAKPFRLYEHFIKARACYFFKDHYEFKKEELENLLKKHNCDTLMLTFKDFVKVK
                     DFGFKCQIIELNIELKDSLREKIKTYIKEFEQ"
     gene            complement(3051..3791)
                     /locus_tag="ACHFOB_000540"
     CDS             complement(3051..3791)
                     /locus_tag="ACHFOB_000540"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008795 - NAD+ synthase activity [Evidence
                     IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD+ synthase"
                     /protein_id="HFN5799358.1"
                     /translation="MDWQKITEKMCDFIQEKVKNSQSQGVVLGLSGGIDSALVATLCK
                     RALKENVFALLMPTQISNKANLEDALRLCADLNLEYKIIEIQSILDAFIKQSENTTLV
                     SLGNFAARIRMSLLYDYSALKNSLVIGTSNKSELLLGYGTIYGDLACAFNPIGSLYKS
                     EIYALAKYLNLHENFIKKAPSADLWENQSDEADLGFSYAKIDEGLKALETNDEKLLRT
                     LDPSLIAMLKNRMQKNAFKGKMPEILEI"
     gene            3865..4461
                     /locus_tag="ACHFOB_000541"
     CDS             3865..4461
                     /locus_tag="ACHFOB_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN5799359.1"
                     /translation="MQIIKQACGVYETNCYILFTPKGEFIIDPGTDALLFIKKHVKKP
                     LAILNTHGHYDHIWDNAKVKKEYNIPIYIHKNDAFMLHDDFNQGYDSSDADFLVDNED
                     ILNICGVDFKFHFLPGHTPGCTMIEIVGKNIMFSGDFLFYRSIGRWDFPYSDANLMKQ
                     SLEKVMTYKEDFKLLPGHGQETTLKEEQVHLPSWLRYF"
     gene            4473..4778
                     /locus_tag="ACHFOB_000542"
     CDS             4473..4778
                     /locus_tag="ACHFOB_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799360.1"
                     /translation="MELDQILLYAFIFLNLFALFGLFLGNKKKNQFNDKKFYKICPCK
                     KMAENGSLSTICIYSAVGGFFYSVLSIGFIGFGNWTLNFIFLLALLSVFLGWKLKLD"
     gene            complement(4819..5598)
                     /locus_tag="ACHFOB_000543"
     CDS             complement(4819..5598)
                     /locus_tag="ACHFOB_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase"
                     /protein_id="HFN5799361.1"
                     /translation="MNTEFQGKTLVISGGTRGIGKAIVYEFAKVGANIAFTYNSNAQI
                     ADEMVQDLEKNYKIKARAYEFNILEPETYKELFEKIDVDFDRVDYFISNAIISGRAVV
                     GGYTKFMKLKPKGINNIFTATVNAFVVGAQEAAKRMEKVGGGSIISISSTGNLVYIEN
                     YSGHGTAKAAVEAMARYAATELGEKNIRVNVVSGGPIETDALRAFTNYEEVKQATINL
                     SPLNRMGQPEDLAGACLFLCSSKASWVTGHTFIVDGGTTFK"
     gene            complement(5598..6494)
                     /gene="dapA"
                     /locus_tag="ACHFOB_000544"
     CDS             complement(5598..6494)
                     /gene="dapA"
                     /locus_tag="ACHFOB_000544"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008840 - 4-hydroxy-tetrahydrodipicolinate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HFN5799362.1"
                     /translation="MDKNIIIGAMTALITPFKNGKVDEQSYARLIKRQIENGIDAVVP
                     VGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEHGAD
                     GILSVAPYYNKPTQQGLYEHYKAIAQSVDIPVLLYNVPGRTGCEISTDTIIKLFRDCE
                     NIYGVKEASGNIDKCVDLLAHEPRMMLISGEDAINYPILSNGGKGVISVTSNLLPDMI
                     SALTHFALDENYKEAKKINDELYNINKILFCESNPIPIKTAMYLAGLIESLEFRLPLC
                     SPSKENFAKIEEVMKKYKIKGF"
     gene            complement(6487..7737)
                     /locus_tag="ACHFOB_000545"
     CDS             complement(6487..7737)
                     /locus_tag="ACHFOB_000545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HFN5799363.1"
                     /translation="MIAYEKIQLKNKLEVYALPVNKNSDVISVDIFYKVGSRNEIMGK
                     SGIAHMLEHLNFKSTKNLKAGEFDEIVKGFGGVDNASTGFDYTHYYIKCAKKNLDKAL
                     ELFAELMANLNLKDEEFQPERAVVLEERRWRTDNNPLGYLYFRLFNHAFMYHPYHWTP
                     IGFFKDIENWSIEDIKEFHSIYYQPKNAILLVSGDIESKEVFELSKKHFEKIKNTKTI
                     PKIHTKEPKQDGVKRIYLHKNSDTELLALAYKIPNFKHKDIPALNALSELLGSGKSSL
                     MSEILIDKLNLINDYYAYVNDCIDENLFIFICNCNPNVNAEKVEKELLKIIDKLKMGK
                     ISQKDLQRVKNNVKSDFIFSLNNASAVANIYGSYLARGDINPLLNYEKDIQNLELKDL
                     ISCAKKYFIQENSTTVILRKDSNG"
     gene            complement(7734..8792)
                     /locus_tag="ACHFOB_000546"
     CDS             complement(7734..8792)
                     /locus_tag="ACHFOB_000546"
                     /EC_number="1.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinone-dependent dihydroorotate dehydrogenase"
                     /protein_id="HFN5799364.1"
                     /translation="MAYEMIKLLLFKLNPEHAHALVEYSLRALSASFPGALSFLAHKY
                     IVDDESLRQNLLGLDFNNPVGLAGGFDKNATMIRPLSALGFGFLEVGTFTPKPQEGNE
                     KPRLFRLVKQESIQNAMGFNNEGAEKIALRLAKTYPFVLPLGVNIGKNKITPNDKALE
                     DYFTLFRDFKDLCDYFIVNISSPNTKNLRELQNDDFLNTLLEEAKKITSKPILIKIAP
                     DMKIDDALNLCENAIKKGADGFILANTSVDYSLLDNNRTFGGISGRLITEKSGIFFKE
                     VTKILFGKTLLIASGGIDSADIAYERIKNGANLVQVYTALIFKGPSLVKNINQNLIEL
                     LRKDGFLHISEAVGVNLK"
     gene            complement(8824..10566)
                     /locus_tag="ACHFOB_000547"
     CDS             complement(8824..10566)
                     /locus_tag="ACHFOB_000547"
                     /EC_number="7.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799365.1"
                     /translation="MHNEMNLKEVLIRFKPFYKRYWKQFAIAIFGMILASGGTAGSFY
                     ALEPILNYIFVEKNEALLYTVPFLLVLMYFFKNLGTYLQSFYVSFIGTDMLRVLRARV
                     LKNVLRLDMDFFKRYRSGELVSRCTNDINALQSIVSNIIPDFFRELLTAIGLLAVVLY
                     QSPTLAFFALVILPLAIFPLVWFAKKLKKYARNIQETNSDLLSYLGEIFSNIELIKAN
                     DNEKKESDKFAKHNDTLCKLNLKSARIDALTSPLMDMMGSVGVAVVIIVGGREVINGS
                     MSVGSFISFVSALFAIYTPLKRLSSLYGKLQGAVAASERTFYLLDLEPQIKGGSKELK
                     NIEKISFENVEFAYENPHKSVLKGVNFDFVKGQMLALVGTSGGGKSSIINLLMYFYEK
                     QKGKILLNQEDISTFTIESLHAKIGLVTQNIYLFNDSFAANIAYSEELEEEKVIQALK
                     LANAYEFVKEMGGIWAEVKEHGKNLSGGQKQRIAIARALYKNPDVLIFDEATSALDNE
                     SEKAIVKTIENLKQDRLILVVAHRLSTIENADKIVVLDKGKVLAIGKDEELLQTCSLY
                     QKFKSKEKTKPSFS"
     gene            complement(10559..11947)
                     /gene="cysS"
                     /locus_tag="ACHFOB_000548"
     CDS             complement(10559..11947)
                     /gene="cysS"
                     /locus_tag="ACHFOB_000548"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HFN5799366.1"
                     /translation="MRLLDSVTKEKIKLDKKDISIYLCGPTVYDDAHLGHARSSVCFD
                     LLRRVLLAQGNRVKFARNYTDIDDKILKKMAQSGQTLEEITEFYIKSYEEDMRVLNVL
                     DPDFKPRATHYITAMLDLIKKLAKDGFVYTLEDGIYFDTSKDEKYLSLSNRNLEENIS
                     RLSNEVQKRNESDFVLWKFDENFYESEFGKGRPGWHTECVAMIDSIFENTLDIHAGGI
                     DLLFPHHENEAAQCRCGCKRKLANIWLHNGFVKIDGEKMSKSLNNSFFIKDALKEFMG
                     EALRFYLLSSHYRSHFNYSLSDLENAKKRLDKFYRLKKRLDLGEISDFDVLNDIEIKS
                     EIAKQILEILNDDLNVSKALALLDDFISSANLELDKESKNKILKQNIKEALSELAKIF
                     GFGFMDATLYFQWGVSKEEREEIEKLILERTEAKKNKDFNTADAIREQLNSKKITLLD
                     TPNGTIWEKINA"
     gene            complement(11947..13398)
                     /gene="murJ"
                     /locus_tag="ACHFOB_000549"
     CDS             complement(11947..13398)
                     /gene="murJ"
                     /locus_tag="ACHFOB_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0034204 - lipid translocation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein biosynthesis integral membrane protein
                     MurJ"
                     /protein_id="HFN5799367.1"
                     /translation="MKSLVFKNFIINALGILFSRILGLARDVLIALFLGAGLYSDIFF
                     VALKMPAFFRRIFAEGAFGQSFLPNFVKAKKKGAFCVSVMMQFSLIVFLFCLLVSFFS
                     SFFTKLFAFGFNADTIALAAPLVAINFWYLFFIFLVTFLGAILNYRQKFFITSFSAAL
                     FNLSIVIAAFFVDKNTPQNTLYYFSYATVLSGVAQLILHLLVLKNNPVIRAMTLSIKF
                     KKTKAKLQGFYGNFFHGVLGSSATQFSSLLDTTIASFLMSGSISYLYYANRVFQLPLA
                     LFAIALTQVSFPKILKHLKSDQENLALKFMQRALALLSILLIASSIVGSVFALEISKL
                     LFERGNFTHEDSVITAYVLIAYLIGLLPFGLQKLFSLWLYAKFKQKTAAWIAVKSLII
                     SALCSMAFIFLIKDESLKVIAVALSSSISAFYLLGANIKEFGFKKFFALISIKICLLV
                     IVALIVFTILLILIKPYILSFFIGIFTSFKGVF"
     gene            13502..15361
                     /locus_tag="ACHFOB_000550"
     CDS             13502..15361
                     /locus_tag="ACHFOB_000550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HFN5799368.1"
                     /translation="MALDEKIIAYTENPARELLSVASRTNLSLNELDFSLLAFSTQYR
                     FGDLEWEKISEKELTLFDKDEIFLKNDLQIKQEYKIEIFHGINQSKASQAVKLVANKN
                     LTKIVAQIDFTNLDFHEKLALELLQNIYKKMLKLKFLIGIRIFDFKKKLMSFCNQYKN
                     TPLNKTIQITVAQGIDPIESQDESLILTYKEKTKNYTIDEKRSGIIVVDENEVVLKHV
                     KFKQGKEGKDLNLHTLKVLAANENKVKFSCSSAFKQVEQDGYTEYIALKKGYVVQDGE
                     KFDIANELDFNGVDFKNIGIIRAGLDKNVKINIKFLSEVKDAVNSGVGIECEELNVVG
                     SVGSNTQLNATKMKIEGTTHSKAKIQAKQAYIKTHRGFAEAEILNIDLLEGGTIKAKE
                     VRIKKSLGGNIQADKIYIENLESNNSCVFFENTTIERINGDNNKFHAKIKTLDKNYDE
                     EFAILGEQISKLNHKINKIRQYILSSKNGILSVEKKITELKNQGQNVPVQYEKALKDF
                     SLQNLELNKLQNEEKELLERKKSLQLELINLQKMLFEATFINKSGKWTDMNEIKFSLL
                     EPKEDIFCSSFVNESAKFIGIKKVIQNNQESIEIHKKLDYEEKDIAWLSASKE"
     gene            15337..15888
                     /gene="ruvA"
                     /locus_tag="ACHFOB_000551"
     CDS             15337..15888
                     /gene="ruvA"
                     /locus_tag="ACHFOB_000551"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009379 - Holliday junction helicase
                     complex [Evidence IEA];
                     GO_function: GO:0003678 - DNA helicase activity [Evidence
                     IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HFN5799369.1"
                     /translation="MVVGIEGIITKKEPTFIIVKCASGLSYGIFISLFCSAKIQTQEK
                     HEFFITQIIKEDSNKFYGFLDKDEQKMFEMLLKVNGVGANTAMAVCSSLDVNSFYKAL
                     SLGDESVLKKVPGIGPKSAKRIIVELSDTKTKLENVSDDKSEALAALLTLGFKQEKII
                     SVLVSAQATGTSELIKEALKKLG"
     gene            15898..16938
                     /locus_tag="ACHFOB_000552"
     CDS             15898..16938
                     /locus_tag="ACHFOB_000552"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008716 - D-alanine-D-alanine ligase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HFN5799370.1"
                     /translation="MKFAILFGGNSYEHEISIVSAVVLKKVINQNLEFIFCDEERRFY
                     HIPSEKMNSKTFSTKAYKKEKELFIKQGGFFSKGFLKENKLECECVINLIHGRDGEDG
                     KIAALFEFYSIKFIGPRLEASVLSFNKELTKLYAKSVGVKTLDYTILRKNQNSKEKLS
                     FPCIIKPARLGSSIGISIVKDEKDLEYAKDVGFEFDNDLVVEEFKNNIKEYNLAGCMI
                     NDEFVFSIIEEPKKKEFLDFEQKYLSFSGHNELIEADLSEELKEKLKDSFKKIYNPLF
                     KGALIRCDFFILDNEIYLNEINPNPGSLANYLFKDFNTTLNALADQISLEKMIKINYN
                     FLHSINGQKGKL"
     gene            16998..17213
                     /locus_tag="ACHFOB_000553"
     CDS             16998..17213
                     /locus_tag="ACHFOB_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system Phd/YefM family
                     antitoxin"
                     /protein_id="HFN5799371.1"
                     /translation="MLSFKQDEIYTATEVVRNFSPIMEKLKKSESGKIVILKNNKFEA
                     VMLSMKEFERLQNAMQLLENIYKNQKA"
     gene            17215..17934
                     /locus_tag="ACHFOB_000554"
     CDS             17215..17934
                     /locus_tag="ACHFOB_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HFN5799372.1"
                     /translation="MAQTQLSYKNKTYQISYEILGDLSLPQILILHGWGADKKLMKQS
                     FCPFLKDFCQIYMDLAGFGNSSVEEILNTQDYANITELFLKQKKLNVCFFMGHSFGGK
                     VSTLLAKEKDTLILLSSAGILAKKSLKVRFKIRIFKILKLFGLGKFYRYFASKDGANL
                     SPIMYETFKKVVDEDFSEIFAKQKAKSLIFWGKSDEATPLYCGEKMHQFLKNSTFYPL
                     EGDHFFFLKHSAFIAQKIKEI"
     gene            17935..19362
                     /locus_tag="ACHFOB_000555"
     CDS             17935..19362
                     /locus_tag="ACHFOB_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016881 - acid-amino acid ligase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mur ligase family protein"
                     /protein_id="HFN5799373.1"
                     /translation="MLINTLYFINSLFFNFCIAFYLMSALQWYSYKFKRVFFHYHKPL
                     WHLYFLFIPYFLFLAFPLYSLVYFALIHTPILYFWNKGIDKKLVFTSKVKWFFVFVFV
                     YNAIFTILALRFSFLFNLFSLPFALLSLKIYEFFTNLYYKKQAKAKLRANENLKIILI
                     TASFGKTSIKNFLYELLKDDFKSYKTPRSVNTLLGIVADINNNLSQDTQIYIAEAGAR
                     LKGDIDEITRFLQPHISIVGEIGNVHLEYFKSVENILSTKLEALNSKRLEKAFLHSST
                     QKEGDKLISLYDEKLSLIHSSLEGLEFKVDIENKSYDFKSQILGDFNAQNLCVCILCA
                     HYLGIKLEKIQKQVLNINSVEHRLQVLSREPKFIIDDGFNGNFKGMSTSYKLCKSYKG
                     RKVLVSPGIVEVSEEENIKLAKIINECFDLAIISAQINAEIFKKELKIKTIILKEKSQ
                     LVQTLAKETKHGDLILFSNDAPSFM"
     gene            complement(19421..>20401)
                     /locus_tag="ACHFOB_000556"
     CDS             complement(19421..>20401)
                     /locus_tag="ACHFOB_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004297822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
                     /protein_id="HFN5799374.1"
                     /translation="NNTAYGYSVDKDGYMGSDFNKAAGLPEDFKIHKSTLDEIERKAE
                     NNSYTSDIKKYLGIDKYYTNIDMAETIKQYYNQFNQIVNHTFNDTNKTSFTETDINSM
                     PKGISELSSDKTIGIMPKNYDKLTITNYYNTQEQYNEAEQLGMFGHINIGLQPLNFTP
                     QSMQTQNLDKDTAIDTFNPDMSVYPQNEDGSYSKEALFMSFLKSTGVSPREGSATLNP
                     IAKSYAEAMAKESFDGSLTSLDDIMTGKVDFASLLKGYAQDGWLDADIYAMEKGVAWQ
                     NTSIGYGGAWFDREFNQAKANGWKASNESINSFVNNIMDRLNNLIGQTRV"
BASE COUNT         7277 a         3467 c         2623 g         7034 t
ORIGIN      
        1 tttctaaata aatttttaaa gccctttcat agtcttcttt agtatcaatc cccatgcttg
       61 ttgttgaaat ttcaagcatt ttgatttttt taccattttc tatagctctt aattgctcta
      121 acttttccgc tctttcaagc gcagaacttg ataaagaaca aaactccctt aatgctttta
      181 cactataagc gtaaatgcct aaatgccctt taaaactttc ctcgtaattt tctctttcat
      241 aagggatttt agctcttgaa aaatacaaag catacccttc tttatcgcaa agcactttaa
      301 ccagattagg atccatagct tcttcttgag tgattttttt ataacaactc gccataaaag
      361 cttttttatc caagcaagaa cttgcaaatt ctttaaattt taataaattt tcacattcta
      421 taaaaggctc atcagcttgg acattgataa taatctcatc atcttttaaa gctagtttct
      481 tacaagcttc attaatccta tccgtaccgc tttcatgatc tttgcttgtt aaaaccgcat
      541 ttagaccata ttctttagcg atacttaaaa ccttttcatc gtctaaagct atacaaactt
      601 catccacgct acttactctt cttgcagtag ccacaaacat aggcactcca cctatatcac
      661 ataaaatttt ctcatgaaaa cgacttgatt ttaatcttgc aggaataata atcatttttg
      721 catccaatct aaaatttctt tttttatatt tctggcttca aatacctttt catcgctatt
      781 tttcaaatca aataaagcca aaatttcatc tttaacttgg acattaaact ctttagctat
      841 aaattttaaa tcttcttttt cattcttaga atccctatca tataaagctt ttatcatact
      901 tggagtaaat tttgtccatt ctgctgtaga agtgataatg ctaggtttta aaggatcaag
      961 cattttaaaa caagttgcgg tatgcggatc gattaaaatc ttgctttgtt tgataaattg
     1021 catacattct tcatcggtgc aaaaatccgc ctcaaaatct tcttgcaaac tttgtaattc
     1081 ttctttttca agtttaaaat atctttcatt ttttaacaaa ttcatcagtt ctttagttct
     1141 tttatcttta aatttcgcaa acaaaagtct ttcgatatta gatgaaataa gtatatccat
     1201 agctggagaa atagtcttct taagactttt ttcacgcaaa tcataaacgc cttgattaaa
     1261 aaattcactc aaaatattat ttgcgtttga agcgattttg atttttgaaa ttttagctcc
     1321 cattttttta gcataaaaag ctcctaaagc attgccaaaa tttccacttg gaacgatgat
     1381 ttgtacttct tctaaaaact cattaaaaag ttttaaactc gcataataat gataaataat
     1441 ctgaaataaa atacgcccaa aatttacaga attagctgcg caaagctcat aatttaaagc
     1501 tttaatttca ttttgaaaat cttttgaaaa aagcaattct tttaaagtgc gttgcgctgc
     1561 gtcaaaatcc tcatctatgg caaaaacttt caagttatcc ttatctaaag ctcgcatttg
     1621 caactcttga actccacttg tgccaccttt tggatacata caagctactt taacattttt
     1681 tgcattttca aaacttttta gggttgcagg ccctgtatcg ccgcttgtag cacagataat
     1741 taaaatattt ttatcctttg aaaattcgct taaaagcacg ccaaaaggct gtaaagccat
     1801 atctttaaaa gctcttgtag gcccatgcca aagctcgtta atataggttt tttcagagat
     1861 tttttgcaaa gaaataggtg tatttttatc atcaaagctt tcgtaacttt tcaaagcctt
     1921 tttaaaaagc tcttcttcgc caaaaccaaa actttctata agctttaaag caaaatcttt
     1981 ataagacaaa ttggcatatt tttctccttc aaaaataggc aaatttaaag gtgagtaaag
     2041 ccctccttct ggagcgtttg ggttaatcaa agcttcctta aaacttgata cattatttac
     2101 atttctactc tcgaccaatt tcactgttca aactccttga tataagtttt tattttttct
     2161 cttaatgaat cttttaattc tatatttaat tctataattt gacatttaaa accaaaatct
     2221 ttaactttaa caaaatcctt aaaagtaagc attagtgtat cgcaattatg tttttttagc
     2281 aaattttcta attcttcttt tttaaactca taatgatctt taaaaaaata acaagccctt
     2341 gccttgataa aatgctcata caatctaaaa ggtttagcaa tagcagttac caaaacagcc
     2401 tttggatttt cttttacaaa agaataacgc acaaaatccc tgccttctaa tgcaataaaa
     2461 tcagcccttt tttcataaat tttcggcaaa cgataagctc cacttggcaa agtaaaatta
     2521 aaataaggtt tgattttact ttcaagtaaa atatcaaatt ttttaatatg aaatttagaa
     2581 aaagcatcat caagcacaac gattttagct cccaactcaa aagctttttc aatacctttt
     2641 actctatctt cactcacaat cacgcctttg atattttctt caaaagcata ctccatagct
     2701 tcatcgccac tttgtgctaa ggtgcataaa atttcatttt gatttttaac aacaaacaaa
     2761 cctttagatt ttcttttata gcccctaagc actataaaaa cgccatcaaa ttcccttgct
     2821 atagctttgc aaagcggggt ttttccatta cctccaaaac ttaaattacc tacactaata
     2881 acaggttttt taaaaactat ttttttacga aaaaaagtat ttaaaatcgc aaaaaaagca
     2941 taaagcacac ttaagggaaa aagtacaaaa gtaaggcatt tttgccaaaa attgggctta
     3001 aaaaaataat tatcaagcca aagttcataa tttttttctt cactcattgt ttaaatttcc
     3061 aaaatttcag gcatttttcc cttaaaagca tttttttgca tgcgattttt tagcatagca
     3121 atcaaagaag gatcaagcgt tcttaaaagt ttttcatcat tagtttctaa ggcttttaga
     3181 ccttcatcga tttttgcata agaaaaaccc aaatccgcct catcgctttg attttcccaa
     3241 agatccgcac ttggagcttt tttgataaaa ttttcatgca agttaaggta ttttgctaag
     3301 gcataaattt cacttttata aagcgatcct ataggattaa aagcacaagc taaatctcca
     3361 taaatcgtac cataacccaa aagtaattcg cttttattag aagtgcctat aactaaagaa
     3421 tttttcaaag cagaataatc ataaagcaaa ctcattctaa tacgagctgc aaaatttccc
     3481 aaagatacta gagtggtatt ttcactttgc tttataaaag catctaaaat gctttgaatt
     3541 tctatgattt tatattcaag atttaaatcc gcacaaagcc ttaaagcatc ttcaagattg
     3601 gctttgtttg aaatttgagt tggcattaaa agagcaaaaa cattctcttt taaagctctt
     3661 ttacaaagcg ttgctaccaa agcagaatca atcccgccac taagccccaa aaccacacct
     3721 tgactttgag aatttttcac tttttcttgt ataaaatcac acattttttc cgtaatcttt
     3781 tgccaatcca taaagcttgc cttttaaaaa tttaatgtat aattatattt atttaaggca
     3841 aattttttat taaagaggta aaaaatgcaa attatcaaac aagcttgtgg agtttatgaa
     3901 actaattgct atattttatt taccccaaag ggtgaattta tcattgatcc aggaactgat
     3961 gcacttttat ttatcaaaaa acatgtaaaa aaacctttgg cgattttaaa tactcacggg
     4021 cattatgatc atatttggga taatgctaag gttaaaaaag aatacaacat ccccatttat
     4081 attcataaaa atgatgcttt tatgctacat gatgatttca atcaaggcta tgattctagc
     4141 gatgcggatt ttttagtaga taatgaagat attttaaata tttgcggagt tgattttaaa
     4201 tttcactttt taccaggaca tacaccaggt tgcactatga tagaaattgt aggtaaaaat
     4261 atcatgttta gtggagattt tttattttat agaagcatag gaagatggga ttttccttat
     4321 tcagatgcaa atttaatgaa acaaagctta gaaaaagtta tgacttacaa agaagatttt
     4381 aaacttttgc caggacatgg acaagaaact actttaaaag aagagcaagt ccatctaccc
     4441 tcttggctta gatattttta aggtatatta aaatggaatt agatcaaatt ttattatatg
     4501 cttttatttt tttaaatctt tttgcccttt ttggtttatt tttgggaaat aaaaagaaaa
     4561 atcaatttaa tgataaaaaa ttttataaaa tctgcccatg taaaaaaatg gcagaaaatg
     4621 gatctttaag tacgatttgt atttattcag ctgtaggagg atttttttac agcgtattat
     4681 ctataggttt tataggtttt ggtaattgga ctttaaattt tattttttta cttgcattat
     4741 taagtgtttt tttagggtgg aaattaaaac ttgattgaaa aatattttta agaaaaatcc
     4801 attgattttt cttaattttt atttaaaagt tgtaccacca tcaacgatga aagtatgtcc
     4861 tgtcacccaa cttgccttac ttgaacaaag aaaaagacat gctccagcca aatcttcagg
     4921 ctgccccatg cgatttaaag ggcttaaatt tatagtagcc tgttttactt cttcataatt
     4981 tgtaaaagct cttaaagcat cagtttcaat aggcccacca cttacgacat ttacacggat
     5041 atttttttct ccaagttcag tagccgcata tcttgccata gcttctacag cggcttttgc
     5101 tgtaccatga cctgaataat tttctatata cactaaattt cctgtagatg agatagaaat
     5161 aatgcttcca ccccctactt tttccatcct tttagctgct tcttgtgcgc ccacaacaaa
     5221 agcatttact gtggctgtaa aaatgttatt aattcccttt ggttttaact tcataaattt
     5281 ggtatagcca cctacaaccg cacgtcctga aatgatagca tttgagataa aataatccac
     5341 tctatcaaaa tccacatcaa ttttttcaaa aagttcttta taggtttcag gttctaagat
     5401 attaaattca taagctctag ctttgatttt ataatttttc tccaaatctt gaaccatttc
     5461 atcagcaatt tgcgcattag aattataagt aaaagctata tttgcaccca ctttagcaaa
     5521 ttcataaact atagctttgc ctatcccgcg agttccaccg ctaatcacta aagtttttcc
     5581 ttgaaattct gtattcatta aaatcctttg atcttatatt ttttcatcac ttcttcaatt
     5641 ttagcaaaat tttccttact tggagaacaa agaggaagtc taaattccaa actttctatc
     5701 aatccagcta aatacatagc cgttttaata ggaataggat tactttcgca aaataaaatt
     5761 ttattgatat tataaagctc atcattgatt tttttagctt ctttataatt ttcatctaaa
     5821 gcaaaatgag ttaaagcgct aatcatatcg ggtaataaat ttgaagttac tgaaatcact
     5881 ccctttccac catttgaaag tataggataa ttgatcgcat cttcccctga aataagcatc
     5941 attctaggtt cgtgtgcaag caaatccaca cacttatcga tatttccact cgcttctttt
     6001 actccataaa tattttcaca atctctaaaa agcttgataa tagtatccgt tgaaatttca
     6061 caacctgttc ttcctggaac attatataaa agcacaggaa tatctacact ttgcgcaata
     6121 gccttataat gctcgtaaag tccttgttgc gtaggtttat tataatacgg tgccacactt
     6181 aaaatcccat cagcaccatg ctctttagca aatttagcca aacccactgc ctcatgagtt
     6241 gcattacttc ccgcacctgc taaaacctta actttagttc ctttacaagt ctcaacggct
     6301 atttctatgc aagttctatg ttcttcatgg gttaaagttg cactttctcc tgttgttcct
     6361 actggaacta ctgcatcgat gccattttct atttgtcttt taatcaatct tgcataactt
     6421 tgctcatcaa cttttccatt tttaaatggt gtaataagag ccgtcatcgc cccaatgata
     6481 atatttttat ccatttgaat cctttcttag aattaccgta gttgaatttt cttgaataaa
     6541 atatttttta gcacaagaaa tcaaatcttt taattccaaa ttttgtatat ctttctcata
     6601 atttaacaaa ggattgatat ctcctcttgc tagatatgaa ccataaatat ttgccactgc
     6661 actagcattg ttaagtgaga aaataaaatc acttttgaca ttatttttca ctctttgcaa
     6721 atctttttga gaaattttac ccattttaag tttatcaatg atttttaaaa gctctttttc
     6781 tactttttct gcattaacat tggggttaca attacaaata aaaataaata aattttcatc
     6841 tatacaatca ttaacataag cataataatc attgattaaa tttaatttat caatcaaaat
     6901 ttcactcatt aaagaacttt tcccacttcc taaaagctcg gataaagcat ttaaagcagg
     6961 tatatctttg tgcttgaaat ttggaatttt ataagcaagg gctaatagtt cagtatctga
     7021 gtttttatgt aaatatattc tttttactcc atcttgctta ggctcttttg tgtgaatttt
     7081 aggtatagtc ttagtatttt taatcttttc aaaatgtttt tttgaaagct caaaaacttc
     7141 cttactttct atatcgccac ttacaagtaa aatcgcattt ttaggttgat aataaatact
     7201 gtgaaattct ttaatatctt caatactcca attttctata tccttaaaaa aacctatagg
     7261 agtccaatga taaggatgat acataaatgc atgattaaaa agcctaaaat aaagatatcc
     7321 taaagggtta ttatctgttc tccatctacg ctcttctaaa accactgctc tttcaggctg
     7381 aaattcttca tcttttaaat ttaaattcgc cataagttct gcaaaaagct ctaaagcttt
     7441 atctaaattt ttcttcgcac atttaatata ataatgagta tagtcaaaac ctgtgcttgc
     7501 attatccaca ccaccaaaac ccttaacaat ctcatcaaat tcgccagctt ttaaattttt
     7561 agtactttta aaatttaaat gttctaacat atgagctatg ccactttttc ccatgatctc
     7621 atttcttgaa cccactttat aaaaaatatc aacgctaatc acatcgctat ttttatttac
     7681 aggcaaagca taaacttcaa gcttgttttt taattgaatt ttttcataag caatcatttt
     7741 aaatttaccc caacagcttc gctaatgtgt aaaaaaccat cttttcttaa aagctctata
     7801 agattttgat tgatattttt taccaaagaa ggacctttaa aaatcaaagc tgtataaact
     7861 tgcaccaaat tagccccatt tttaatacgc tcataagcaa tatcagcact atcaatccct
     7921 ccacttgcaa taagcaaggt tttgccaaaa agaattttag ttacttcttt gaaaaaaata
     7981 ccactttttt ccgtaatcag tcttccacta ataccaccaa aagtacgatt attatctaat
     8041 aaactataat caacactagt attggctaat ataaacccat ctgcaccttt tttaatggca
     8101 ttttcacata aatttaaagc atcatctatt ttcatatcag gagcaatttt tatcaaaata
     8161 ggcttagaag tgattttttt ggcttcttca agcaaggtat ttaaaaaatc atcattttgc
     8221 aactctctta aatttttagt attaggagat gagatattaa cgataaaata atcacacaaa
     8281 tccttaaaat ctctaaacaa agtaaaataa tcctccaagg ctttatcatt tggagtgatt
     8341 ttatttttcc ctatatttac ccctaaaggc aaaacaaaag gataggtttt tgcaagtctt
     8401 aaagcaatct tttcagcacc ttcgttgtta aaacccatag cattttgtat actttcttgt
     8461 tttacaagtc taaatagacg tggcttttca ttgccttctt gaggttttgg agtaaaagtt
     8521 cccacttcta aaaagccaaa tcctaaagca ctcaaaggtc ttatcatagt ggcattttta
     8581 tcaaagcctc ctgctaaacc tacaggatta ttaaaatcaa gtccaagtaa attttgcctt
     8641 aaactctcat catcaactat atatttgtgt gctaaaaaac ttaaagctcc tggaaaactg
     8701 gcacttaaag cccttaagct atattcaacc aaagcatgtg catgctcagg gtttaactta
     8761 aaaagtaaaa gttttatcat ttcataagcc attttttaat cctttttgaa attctaacta
     8821 aaattaacta aagctgggct ttgttttttc tttgctttta aatttttgat acaaagaaca
     8881 agtttgcaaa agctcttcat ctttacctat tgccaatacc ttacccttat ccaatactac
     8941 tattttatcc gcattttcta tagtgcttaa acgatgtgca accactaaaa tcaatctatc
     9001 ttgttttaaa ttttctatag ttttaactat tgctttttca ctttcattat ccaaagctga
     9061 agttgcttca tcaaaaataa gcacatcagg atttttatat aaagctctag cgattgctat
     9121 tctttgtttt tgccctccac ttaagttctt accatgttct ttcacttcag cccaaatccc
     9181 gcccatttct ttaacaaatt cataagcatt ggccaatttt aaagcttgga tgactttttc
     9241 ttcttctaac tcttcgctat aagcaatatt tgcagcaaaa ctatcattaa aaagataaat
     9301 attttgcgtt acaagtccta ttttagcatg taagctttct atggtaaaag tgctaatatc
     9361 ttcttgattg agtaaaattt tacctttttg cttttcataa aaatacatca aaagattaat
     9421 aatagaagat ttaccacccc cacttgtccc tacaagagca agcatttgcc ctttaacaaa
     9481 atcaaaattt acgcctttta aaacactttt atgcgggttt tcataagcaa attcaacatt
     9541 ttcaaagcta attttttcaa tgttttttaa ttctttgctt ccacctttaa tttgaggttc
     9601 taaatccaat aaataaaaag ttctttcact tgccgcaaca gcaccttgaa gttttccata
     9661 taaagacgaa agacgcttta aaggagtata tatcgcaaaa agtgccgaaa caaaactgat
     9721 aaaacttccc acactcatag aaccattgat aacctctcta ccccctacaa taatcaccac
     9781 agcaacccca acagaaccca tcatatccat taaaggactt gtaagtgcat caatacgtgc
     9841 ggattttagg tttaatttac ataaagtatc attatgctta gcaaatttat cactttcttt
     9901 tttttcatta tcattagctt tgatcaattc aatatttgaa aaaatttcac ccaaataaga
     9961 aagtaaatcc gaatttgttt cttgtatatt tcttgcatat tttttaagtt ttttagcaaa
    10021 ccataccaaa ggaaaaatag ctaaaggcaa aatcactaaa gcaaaaaaag ccaaagtagg
    10081 actttgatac aagactaccg caagcagtcc tatagcagtt aaaagctctc taaaaaaatc
    10141 aggaataatg tttgatacta tgctttgaag tgcattaata tcattagtac aacgacttac
    10201 aagctctccg cttctatagc gtttaaaaaa atccatatcc aagcgtaaaa cattttttaa
    10261 aaccctagca cgcaatactc ttaacatatc tgttcctata aaggaaacat aaaaactttg
    10321 taaataagtt ccaagatttt taaaaaaata catcaatact agcaaaaaag gtactgtata
    10381 aagtaaagct tcattttttt caacgaaaat ataatttaaa ataggctcta aagcataaaa
    10441 acttccagca gttcctccgc ttgctaaaat cataccaaaa atagctatag caaattgttt
    10501 ccaatatctt ttataaaagg gcttaaagcg tattaaaacc tcttttaaat tcatctcatt
    10561 atgcatttat tttctcccaa attgttccat ttggagtatc taaaagagtg atttttttac
    10621 tatttaattg ctctcttatt gcatcagctg tgttaaaatc tttgtttttc ttagcctcag
    10681 ttctttctaa aattaacttt tcaatctctt ctcgttcttc tttgcttaca ccccattgaa
    10741 aatataaagt tgcatccata aaaccaaagc caaaaatttt agctagctca cttaaagctt
    10801 ctttgatatt ttgttttaaa attttatttt tgctttcttt atccaactct aaatttgcac
    10861 tactgataaa atcatccaaa agagctaagg ctttagaaac atttaaatca tcatttaaaa
    10921 tctctaaaat ttgcttagca atttcgcttt ttatttcaat atcatttaaa acatcaaaat
    10981 cagaaatttc acctaaatcc aatctttttt taaggcgata aaatttatct aaacgttttt
    11041 tagcattttc taaatccgat aaagaataat taaaatgaga tctataatga gaactcaaaa
    11101 gataaaatct taaagcctcg cccataaatt cttttaaagc atcttttata aaaaaactat
    11161 tatttaaact tttactcatt ttttcgccat cgatttttac aaaaccattg tgaagccaaa
    11221 tatttgctaa ttttctctta catccacaac gacattgcgc agcttcattt tcatgatgag
    11281 gaaaaagcaa atctatccct ccagcatgta tatcaagggt attttcaaaa atagaatcaa
    11341 tcatagcaac acattcagta tgccaacctg gacgcccttt gccaaattca ctttcgtaaa
    11401 aattttcatc aaatttccaa agcacaaaat cgctttcatt tcttttttgc acttcattac
    11461 ttagacgaga gatattttct tctaaattgc gatttgatag gcttaaatat ttttcatctt
    11521 tacttgtatc aaaataaatt ccatcttcta gagtataaac aaacccatcc ttagcaagct
    11581 ttttaatcaa atcaagcata gctgttatat aatgcgttgc acgaggttta aaatcaggat
    11641 ctaatacatt taaaaccctc atatcctctt cataactttt gatataaaat tccgtaattt
    11701 cctctaaagt ttgaccactt tgagccattt ttttcaaaat cttatcatca atatctgtat
    11761 aatttctagc aaattttacc ctattgcctt gagcaagtaa aaccctacgc aaaagatcaa
    11821 aacaaacact acttcttgca tgtcctaaat gtgcatcatc ataaaccgta ggtccgcata
    11881 aataaatact aatatctttt ttatcaagtt ttattttctc ttttgttaca ctatctaata
    11941 atctcattaa aaaactcctt taaaacttgt aaaaattcct ataaaaaaac ttaaaatata
    12001 aggtttaatc aaaataagta agatcgtaaa aacaatcaaa gcaactataa ccaataagca
    12061 aattttaata gatattaaag caaaaaattt cttaaaacca aattctttga tattagctcc
    12121 aagcaaataa aaagcactaa tagagcttga aagtgctact gcaataacct ttaaactttc
    12181 atctttaatc aaaaatataa aagccataga acataaagca ctgataatta aagattttac
    12241 cgcgatccaa gctgctgttt tttgtttaaa ttttgcataa agccacaaag aaaaaagctt
    12301 ttgcaaacca aaaggtaaaa gccctataag ataagcaatc aaaacataag ccgtaatcac
    12361 actatcttcg tgagtgaaat ttcctctttc aaataaaagc tttgaaattt ccaaagcaaa
    12421 cacagaacct acaatactag aagcaataag caaaatgctt aaaagcgcta atgctctttg
    12481 cataaatttt aaggctaaat tttcttgatc actttttaaa tgttttaaaa tttttggaaa
    12541 agaaacttga gttaaagcaa tagcaaaaag tgccaggggg agttggaaga cacgatttgc
    12601 ataataaaga taagaaatac tcccgctcat taaaaaacta gctatagttg tatcaagcaa
    12661 tgagctaaat tgagtcgcag aagaacctaa aactccatga aaaaaattgc cataaaaacc
    12721 ttgtaatttc gccttggttt ttttaaattt tatacttaaa gtcatagcac gtattacagg
    12781 attgtttttt aaaacaagca aatgtaaaat aagctgtgcc accccactta aaaccgttgc
    12841 ataagaaaaa taataaagtg tattttgcgg tgtattttta tccacaaaaa aggcagctat
    12901 aacaatactt aagttaaata atgccgcaga aaaagaggta atgaaaaatt tttgtctata
    12961 atttaaaata gctcctaaaa aagtaactaa aaaaataaaa aacaaatacc aaaaattaat
    13021 cgccaccaaa ggagccgcta aagctatagt atctgcgtta aacccaaaag caaaaagctt
    13081 agtaaaaaaa gaggaaaaaa aacttaccaa aagacaaaat aaaaaaacta taaggctaaa
    13141 ttgcatcatt acactaacgc aaaaagctcc cttttttttc gcttttacaa aattaggcaa
    13201 aaaactttgt ccaaaagccc cttctgcaaa aattcttcta aaaaaagcag gcatttttaa
    13261 agccacaaaa aaaatatcac tataaagccc tgctcctaaa aaaagcgcta ttaaaacatc
    13321 tctagcaagc cctaaaattc ttgaaaataa aattcctaaa gcattgataa taaaattttt
    13381 aaatactaaa ctcttcatta aattttttca taaatttcaa aatataaaga gaactatttt
    13441 aactaaaatt gattaaaaat tgactataat tacattctta attttttaca aggggaaagt
    13501 tttggctttg gatgaaaaaa ttattgccta tacagaaaat ccagctcgag agcttttaag
    13561 cgtagcttca cgaacaaacc ttagcttaaa tgagcttgat tttagtttat tggcattttc
    13621 tacacaatat cgttttggag atttagaatg ggaaaaaatc tctgaaaaag aattaactct
    13681 ttttgataaa gatgaaattt ttttaaaaaa tgatcttcaa atcaagcaag aatacaaaat
    13741 agaaattttc cacggtataa accaaagcaa agcatctcaa gcagtcaaac tagttgcaaa
    13801 taaaaattta accaaaatag ttgctcaaat tgattttaca aatttagact ttcatgaaaa
    13861 actagcacta gaacttttgc aaaatattta taaaaagatg ttgaaactta aatttttaat
    13921 aggtatccgc atttttgatt ttaagaaaaa attaatgtct ttttgcaacc aatataaaaa
    13981 caccccttta aataaaacta tacaaatcac cgttgcacaa ggtattgatc ctatagaaag
    14041 tcaagatgaa tctctgatct tgacttataa agaaaaaacc aaaaactaca ctatcgatga
    14101 aaaacgctca ggtattattg ttgttgatga aaatgaagtt gttttaaaac acgtcaaatt
    14161 taaacaaggt aaagaaggaa aagacttaaa tttacacacc ttaaaagttt tagctgcaaa
    14221 tgaaaataaa gttaaatttt cttgttcttc ggcttttaaa caagtagagc aagatggata
    14281 cacagaatat atagccttaa aaaaaggtta tgtagtacaa gatggtgaaa aatttgatat
    14341 cgccaatgaa ctagatttta atggggtaga ttttaaaaat atagggatta taagagctgg
    14401 actagacaaa aatgtcaaaa tcaatataaa atttctttca gaagtaaaag atgctgtaaa
    14461 ttctggcgtt gggatagaat gtgaagaatt aaatgtagtc ggaagcgtag gaagcaacac
    14521 tcaacttaat gccaccaaaa tgaaaattga aggcactacg cactctaaag ccaaaattca
    14581 agccaaacaa gcctatataa aaactcatag aggatttgcg gaagccgaaa ttttaaatat
    14641 agatttgctc gaaggtggaa caatcaaagc caaagaagtg agaattaaaa aaagtttagg
    14701 cggaaatata caagctgata aaatctatat agaaaattta gaaagtaata attcttgtgt
    14761 gttttttgaa aacaccacaa tagaacgcat taacggggat aacaataaat ttcatgctaa
    14821 aattaaaact cttgataaaa attatgatga agaatttgcg attttaggag agcaaatttc
    14881 taagttaaat cataaaataa ataaaataag acaatacatt ttatcaagca aaaatggaat
    14941 tttaagcgtt gaaaaaaaga taacagaact taaaaatcaa ggtcaaaatg ttcctgtaca
    15001 atacgaaaaa gccctaaaag atttctcttt acaaaatctt gaattaaata aactacaaaa
    15061 tgaagaaaaa gaacttcttg aacgcaaaaa atctttgcaa ttagaattaa tcaatttgca
    15121 aaaaatgctt tttgaagcaa cttttataaa taaaagcggc aaatggactg atatgaatga
    15181 aatcaaattt tcacttctag agcctaaaga agatattttt tgctcttcat ttgttaatga
    15241 aagtgctaaa tttataggca ttaaaaaagt catacaaaac aaccaagaaa gtatagaaat
    15301 acataaaaaa ttagattatg aagaaaagga tatagcatgg ttgtcggcat cgaaggaata
    15361 atcacaaaaa aagaacctac ttttatcatt gttaaatgtg ctagtggttt aagctatggg
    15421 atatttattt ctcttttttg ttctgctaaa attcaaactc aagaaaagca tgagtttttt
    15481 atcactcaaa tcatcaaaga agattctaat aaattttatg gcttcttgga taaagatgaa
    15541 caaaaaatgt ttgaaatgct tttaaaagtc aatggagtgg gtgcaaatac tgctatggcg
    15601 gtatgctcta gtcttgatgt aaattctttt tacaaagcgt taagtttggg cgatgaaagc
    15661 gtgcttaaaa aagtacctgg cataggtcca aaaagtgcaa aacgcattat agtagaactt
    15721 tctgacacaa aaaccaaact tgaaaatgta agcgatgata aaagcgaagc cttagccgca
    15781 cttcttactc taggctttaa acaagaaaaa atcataagtg ttttagtaag tgctcaagca
    15841 acaggcacaa gcgaactcat caaagaagct cttaaaaaac taggataaag gaataaaatg
    15901 aaatttgcaa tactttttgg cggaaattct tatgaacatg agattagtat agtaagtgct
    15961 gtagtgctta aaaaagttat caatcaaaat ttagaattta ttttttgtga tgaagaaaga
    16021 agattttatc atatcccaag tgaaaaaatg aattctaaaa cttttagcac caaagcttat
    16081 aaaaaagaaa aagaactctt catcaaacaa ggaggttttt ttagcaaagg ctttttaaaa
    16141 gaaaataaac tagagtgcga atgcgtgatc aatcttatcc atggtagaga tggagaagat
    16201 ggaaaaattg cggctttatt tgagttttat tctattaaat ttataggacc taggcttgaa
    16261 gctagtgtat tatcttttaa caaagaactt accaaacttt atgccaaaag cgttggagta
    16321 aaaacacttg attataccat actaagaaaa aatcaaaact ctaaagaaaa gcttagtttt
    16381 ccttgcatta tcaaacctgc aagacttgga agtagtatag gtattagtat agtaaaagat
    16441 gaaaaagatt tagaatacgc caaagatgta ggttttgaat ttgacaatga tcttgtagta
    16501 gaagaattta aaaacaatat caaagaatac aatcttgcag gatgtatgat caatgatgag
    16561 tttgtttttt ccattataga agagccaaag aaaaaagaat ttttagactt tgaacaaaaa
    16621 tatcttagct tttcaggaca caatgaactt atagaagcag atttaagcga agaattaaaa
    16681 gaaaaactca aagatagctt taaaaagatc tacaatcctt tgtttaaagg tgctttaata
    16741 cgctgtgatt tttttatact ggataatgaa atatatttaa atgaaatcaa cccaaaccct
    16801 ggttctttgg ctaattatct ttttaaagat tttaatacca ctttaaacgc tttagctgat
    16861 caaatttcac ttgaaaaaat gataaaaatc aattacaact tccttcactc cattaacgga
    16921 caaaaaggaa aattataagc ttttaagtca aaatgcgcta aattatacat aaaatttagc
    16981 gtattttagg aagaaaaatg ctctctttta aacaagatga aatttacact gccaccgaag
    17041 tggtaagaaa ttttagcccc attatggaaa aactcaaaaa aagcgaaagt ggaaaaatag
    17101 ttattttaaa aaataacaaa tttgaagctg taatgcttag tatgaaagaa tttgaacgct
    17161 tacaaaatgc catgcaactt ttagaaaata tctacaaaaa tcaaaaggct taaaatggct
    17221 caaactcaac tttcttataa aaacaaaact tatcaaattt cttatgaaat tttaggtgat
    17281 ctttccttac cgcaaatact tatcttacac ggctggggag ctgataaaaa acttatgaaa
    17341 caaagttttt gtcctttttt gaaagatttt tgtcaaattt atatggattt agcaggtttt
    17401 ggaaattcaa gcgtggaaga aattttaaac actcaagatt atgccaatat cacagaactt
    17461 tttttaaaac aaaaaaaact caatgtctgt tttttcatgg ggcattcttt tggtggaaaa
    17521 gtaagcaccc tactcgcaaa agaaaaagac accctaatct tactttcaag tgcaggaatt
    17581 ttggctaaaa aatccctaaa agtgcgtttt aaaatccgta tttttaaaat tttaaaactc
    17641 tttggtttgg gaaaatttta tcgctatttt gctagtaaag atggagcaaa tcttagtcct
    17701 ataatgtatg aaacctttaa aaaggttgtt gatgaggatt ttagtgaaat ttttgccaag
    17761 caaaaggcta aaagcttgat tttttgggga aaaagcgatg aagctacgcc tttgtattgt
    17821 ggtgaaaaaa tgcatcaatt tttaaaaaat agtacttttt atcctttaga gggggatcat
    17881 tttttctttt taaaacactc tgctttcata gctcaaaaaa tcaaggaaat ttaaatgctt
    17941 atcaatactc tttattttat caattcttta ttttttaatt tttgtatagc tttttatctt
    18001 atgagtgctt tacaatggta ttcttataaa tttaaacgcg tgttttttca ttatcataaa
    18061 cctttgtggc atttgtattt tttatttatt ccttattttt tattcttagc ttttccttta
    18121 tactctttgg tatattttgc attgatccat actccgattt tgtatttttg gaataaaggc
    18181 atagataaaa agcttgtttt tacaagtaag gttaaatggt tttttgtttt tgtttttgtt
    18241 tataatgcta tttttaccat ccttgctttg cgtttttctt ttctttttaa tctttttagt
    18301 cttccttttg ctttattgag tcttaaaatt tatgagtttt ttacaaattt atattataaa
    18361 aaacaagcca aagccaaact aagagccaat gaaaatttaa aaatcatact cattaccgca
    18421 agttttggaa aaacaagtat taaaaatttt ttatacgaac ttttaaaaga tgactttaaa
    18481 agctacaaaa caccacgatc tgtcaatacc ttgctaggta tagttgctga tatcaataac
    18541 aatttaagcc aagatactca aatttacata gctgaagcag gtgctagact taaaggcgat
    18601 attgatgaaa tcactcgttt tttacaacct cacatcagca tagtaggaga gataggcaat
    18661 gtacatttag agtattttaa aagtgttgaa aatatcctct caaccaaact tgaagcctta
    18721 aattccaaaa gactagaaaa ggctttttta cactctagca cccaaaaaga aggagataaa
    18781 ctcatcagcc tttatgatga gaaattaagt cttattcatt caagtcttga aggtttagaa
    18841 tttaaagtcg atatagaaaa taaatcctat gattttaaaa gtcaaatttt aggggatttt
    18901 aatgcgcaaa atctttgtgt ttgtatactt tgtgctcatt atcttggcat aaaactagaa
    18961 aaaattcaaa agcaagtttt aaatataaat tccgtagaac atcgcttgca agtgctttca
    19021 agagagccta aatttatcat agatgatggt tttaatggaa attttaaagg tatgagcaca
    19081 agctataaac tttgtaaaag ctataaagga cgcaaagttt tagtaagtcc tggtatagta
    19141 gaagtaagcg aagaagaaaa tataaaactt gctaaaatca tcaatgagtg ttttgatctt
    19201 gctatcatta gtgcacaaat caatgctgaa attttcaaaa aagagttaaa aataaaaacc
    19261 attatactta aagaaaagag tcagctagtt caaactctag ctaaagaaac aaaacacgga
    19321 gatttaatac tcttttcaaa cgatgcacct agctttatgt gattcgcata agtatttgca
    19381 aatgtcatca ttttcaattt gacttcgtgc aaatacttct ttaaacccta gtctgcccta
    19441 taagattatt aagtctatcc attatattat ttacaaaaga atttatactt tcattacttg
    19501 ctttccagcc attagctttt gcttgattaa attctctatc aaaccaagct ccaccataac
    19561 ctatacttgt attttgccaa gcaacccctt tttccattgc atatatatct gcatcaagcc
    19621 agccatcttg tgcataacct tttaataaac ttgcaaaatc aactttgcct gtcatgatgt
    19681 catctaagga agttaatgat ccatcaaagc tttctttggc catagcttca gcataagact
    19741 tagctatagg atttaatgtt gcactacctt ctcttggcga tacacccgtt gattttaaaa
    19801 aactcataaa caaagcctct ttagagtaac ttccatcttc attttgtgga taaactgaca
    19861 tatcaggatt aaaagtatct attgcagtgt ctttatctaa attttgagtt tgcatacttt
    19921 gcggagtgaa atttaatggt tgtaagccta tattaatatg cccaaacatt cctaattgtt
    19981 ctgcttcatt atattgctct tgtgtattat aatagtttgt tattgttagc ttatcataat
    20041 ttttcggcat aatacctata gttttatcag atgataattc actaattccc ttaggcatag
    20101 aatttatatc tgtttcagtg aaacttgttt tattggtatc attaaaagta tgattaacaa
    20161 tttgattaaa ttgattatag tattgtttta tggtttcagc catatctatg tttgtataat
    20221 atttatctat acctaaatat ttttttatat ctgaagtata agagttattt tcagccttcc
    20281 tctctatctc atccaaagta gatttatgta tcttaaaatc ttcaggtaat cctgcagctt
    20341 tgttaaaatc acttcccata tagccatctt tatctacact ataaccatag gctgtattat
    20401 t
//
LOCUS       DAZBIH010000018        19154 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.018, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000018 DAZBIH010000000
VERSION     DAZBIH010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.018"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            97..731
                     /locus_tag="ACHFOB_000557"
                     /pseudo
     CDS             97..731
                     /locus_tag="ACHFOB_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344926.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
     gene            complement(743..1046)
                     /locus_tag="ACHFOB_000558"
                     /pseudo
     CDS             complement(743..1046)
                     /locus_tag="ACHFOB_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002920362.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent DNA methyltransferase"
     gene            1101..2603
                     /gene="hsdM"
                     /locus_tag="ACHFOB_000559"
     CDS             1101..2603
                     /gene="hsdM"
                     /locus_tag="ACHFOB_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFN5799375.1"
                     /translation="MAKKKEIKLEDALWKSADKLRKNIDAAEYKHIVLGLIFLRYISD
                     SFMQKYEELLKEQDDGADPEDADEYLADNIFFVPEKSRYNYIRDNAKNPKIGKMLDEA
                     MDEIEKHNDTLKGVLPKVYAKDNLDSKCLGELIDLIGNIAFDTGKSTDVLGHVFEYFL
                     GEFALAEGKQGGQFYTPKCVVELLVTMLEPYKGRVFDPCCGSGGMFVQSEEFVKSHQG
                     RLDDISIYGQESNQTTYKLAKMNLAIRKIESSQVIWNNEGSFLNDAHKDLKADFIIAN
                     PPFNDSDWSGELLENDGRWKYGVPPASNANYAWIQHFLYHLSPNGGVAGFVLAKGALT
                     SNTTNEAAIRKALIEDDLIDCIVNLPAKLFLNTGIPASLWFIRRQKLPKTVKKTLFID
                     ARDLGTRINRRNKTLNKDDINQIANIYKAWKNGTDYEDIKGFCKSVSIDEIRELSYVL
                     TPGRYVGLADSDDEFDFDTRFNELLAKLKSQIKTEQELSEIILKNLEKIK"
     gene            2600..4066
                     /gene="mloB"
                     /locus_tag="ACHFOB_000560"
     CDS             2600..4066
                     /gene="mloB"
                     /locus_tag="ACHFOB_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5799376.1"
                     /translation="MIRTVMDFKFVLRLLEANQFENEVVEYKKNNKDFIVLGKNISAL
                     SNTAALLGIDKAYIIFGIEDGTLNIVGTNFKPKQEKKGNEELESWLHKVLKPNIEFKI
                     HEITEKEIRLVVFEIEATKISPIKFEEKAYIRIGSNRKELDKYPEKEKKLWQVLSGFS
                     FENEIAKSNLNIQDIYDLLDYSKCFDMLDISYDNYSSDEYIIEKLIEHGLVKNLNDSF
                     AITNLGAILFAKDLTKFKGLNRKRIRFIRYQGKNKIHTLEELEGRKGYAIGFQGLISY
                     IMQYVPKNEVIENAIRKDTTLYPEIAIRELVANAIIHQDFTINGRNPMIEMYSDRIEI
                     TNNGKSLIDIKRLIDMPSKSRNDKLANLMRIMGICEERGSGVDKVIDSVEAYQLPAPD
                     FINNEDYFQAILFSHMPLEDMTKQDRIRATYQHCCLKWASREAMTNASLRARFKIGDK
                     QHSKASKIISDTLEAGLIKQQDPENKSTKHVKYVPFFV"
     gene            4285..5427
                     /gene="hsdS"
                     /locus_tag="ACHFOB_000561"
     CDS             4285..5427
                     /gene="hsdS"
                     /locus_tag="ACHFOB_000561"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFN5799377.1"
                     /translation="MNNWKKCKLGDIAEITMGQSPKSEFYNFDNIGMPFLQGNRTFGR
                     KYPYFDTYCTEYKKIAKKGEILFSVRAPVGDINFANNDICIGRGLCSMNAKNGENEFL
                     YYLLHNLRSVIINNESGSVFGSVNKNDLQTIEILLPLLEEQRQIATILSSIDDKIELL
                     HEQNKTLEELAQTLFLNWFKDREFNSTISDFISMQNGFAFKSKDFIDYGNNGVIKIKN
                     ISNGIVDIVNTDKISQNTINEVNNKFNINSGDILFAMTGAEIGKMGIVPSTNKKLWLN
                     QRVGMVKERFLGARFLAYIHLTSEFGYDYVINSATGSAQENISATDIENCPFVKLTSE
                     EIVSYSKQLNDFFEKIIFNLGEIQTLENMRDILIPKLLNGEIKITN"
     gene            5438..7204
                     /gene="rloH"
                     /locus_tag="ACHFOB_000562"
     CDS             5438..7204
                     /gene="rloH"
                     /locus_tag="ACHFOB_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent endonuclease"
                     /protein_id="HFN5799378.1"
                     /translation="MNKYKFVKFQVKNFRSLLDITLNIDNNNINTICGENNIGKTNFL
                     RALNLFFNHNNGVEYNQNEDRPYHIQKGSTGGRKTELIGYFTKNNVTHILKVEFHKDK
                     IVYILNGKMVEWKVARDIVESFKLLFIEASNVNMPSVISAILENDALLALDNKRKKQS
                     EPLRTLKLFIEQSKKAIEDIEKDINIYLKQMLDFDNTLKDKEIKIRFAEFEKLRDVVK
                     TMTSVTLDDGNDHLMDHKGSGAQRIVLLSLMQYITDKITTDIIWAIDEPEAFLQPKLQ
                     KKIMEIFKNIVREKKQPIIMTTHSQYFVDFNNLVNTHLFKLTKEEKIYARKKGRVFQE
                     INTKPIYIGTAFEKLSVIKKHLGIETNDNWDIMPYNILVEGEEDKKYLQMLIEILNLS
                     MPNIIHSGGATKIAGFLEYFNNQCSYTSFKPYFICIFDNDEEGRKQYNKISKDNLYPN
                     IKLDAKKLKRYGESIQENNRDIWEIEDFMPIKIIVDAVNIILKYKQYNTITNSQISDR
                     KKLAFKNMSILDYLEKCIADRNEEKERFILNTESRKKEICQNAFRAREKYTKNDLEDY
                     HVDFMNELIDSFNKVDLIKKDN"
     gene            7207..10302
                     /gene="hsdR"
                     /locus_tag="ACHFOB_000563"
     CDS             7207..10302
                     /gene="hsdR"
                     /locus_tag="ACHFOB_000563"
                     /EC_number="3.1.21.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009035 - type I site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HFN5799379.1"
                     /translation="MSKAKTSEFDLEQFVISSLLEHGWCYEKPVRATDEVLLETSLVN
                     ALCRLNPQLDLSKANEIYKELKSKNHLSLLDSNENFHYKLVNGVNINTTKDGESRADI
                     INLIDFNNASNNEFIATNQLSITEAKENKIPDVVLYINGIPLVLMELKSPSDENATIN
                     SAYNQINTYKQTIPSIFTYNAFCVISDGYFARAGSISADFSRFMAWKSSDGINYAPNK
                     SLEIKTLIDGMLNPKTLLDIICNFIVFEKEQIRDLNGILSIKTTKKIACYHQYYAVNK
                     AISRTITASSKDGDKKGGVVWHTQGSGKSLSMVFYSAKAIKALNNPTILLITDRNDLD
                     DQLFGTFASCANLLRQEPKQANDKEHLKELLRVASGGVVFTTIQKFSPENDNVFECLS
                     LRDNIIVIADEAHRTQYGFDAKVVEEKSKSGDVLGQKIVYGFAKYLRDALPNATYIGF
                     TGTPIESHDINTPAVFGNYIDIYDISRAVEDGATVSIYYESRLAKIELSEEGKRLVNE
                     LDEKLENQDSQKAKATKLEALVGSTSRLKQIAKDIVKHFETRSSKLGGKGMIVSISRS
                     VAIKLYDEIIKIRPSWHSDELSSGAIKVVMTSSSSDGVEFSKHHTSKIQKQFLANRMR
                     NIDDELKLVIVVDMWLTGFDVPSLHTLYIDKPMKGHNLMQAIARVNRVYKDKPSGLVV
                     DYLGIASDLKKALSFYSESGGKGDIITTQEDAVKVMIEKLEIVEQMLPNDYEKYFELD
                     TGAKLEYILDVEEHILSNEDGKNRFIKEFAALDKAYTIAMPHEKALSIKNKIAFMYAI
                     KARFLKFAKENENENLLNQALIKQVVDKAIVSSKVVDIFDASGIKKPDISILSDEFLL
                     EVKNMKRKNLAFEMLKKILNDEIKAREKLSLTKAKKLAQMLSDAIKKYNNKLISSSEA
                     LDELINMSKSIVSMEDEAKKLGLKDYEYAFYSALACNDEYEKILGNEKLLALVSEILQ
                     IIKNNVSIDWMIKENVRARLRVAVKRVLNKYGYPPDMQQLAIDGVLAQAEILAKELAN
                     E"
     gene            10530..11606
                     /locus_tag="ACHFOB_000564"
     CDS             10530..11606
                     /locus_tag="ACHFOB_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HFN5799380.1"
                     /translation="MQYKILENNRIASKGYAMLSKDAKFTPFEFSRHAIGDNDILIKI
                     LYAGICHSDIHTARSEWGEATYPCVPGHEIAGEVIAVGKNVSKFKVGDYAGVGCMVNS
                     CGECDACKRSQEQFCENGKTIFTYNSCDVFHGNENTYGGYSNNIVVSEKFAVCVPKDA
                     PMEKVAPLLCAGITTYSPLKFSNIKEGSSVAVAGFGGLGMMAVKYAVKMGAKVSVFAR
                     NENKKADALAMGVSSFYTSCDKNAVKERFDLIISTIPTPYNPAIYLDLLKFGGEMAIV
                     GLPPHEVAPSISVITFVHKAGKKVYGSLIGGIAETQEMLDFSLKHGIYPETELITPQE
                     IDKAYENLTSGKAKFRYVIDMTKE"
     gene            complement(11608..12057)
                     /locus_tag="ACHFOB_000565"
     CDS             complement(11608..12057)
                     /locus_tag="ACHFOB_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipocalin family protein"
                     /protein_id="HFN5799381.1"
                     /translation="MLELIGELSLQNYMGEWLEIARKPAFFQKSCLNSKAKYELKYKN
                     GIPYVEIENFCSKKNEISSIKGKAKIVSNRQLAVRFNIFMNLFNKVNYEIIFVDSEYK
                     VAIVGSPDKKYLWILARNIIDEKNIKELLNIAKQRGFDISDVVFDKY"
     gene            complement(12045..12392)
                     /locus_tag="ACHFOB_000566"
     CDS             complement(12045..12392)
                     /locus_tag="ACHFOB_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HFN5799382.1"
                     /translation="MTKENSPCNFEECGFNYTLALINGKYKMSILYCLFRYEIVRYNE
                     LKRFLSSISFKTLTNTLRELENDGLIIRKEYAQIPPKVEYSLSKRGQSLIPILQAMSK
                     WGKKDKKGKKCLN"
     gene            12492..13070
                     /locus_tag="ACHFOB_000567"
     CDS             12492..13070
                     /locus_tag="ACHFOB_000567"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008753 - NADPH dehydrogenase (quinone)
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HFN5799383.1"
                     /translation="MKNILLLNGAKEFGNSKGQLNLTLHNHALEILKTLGYEVDQTHI
                     DQGYDPKEEMQKFIKADAVIYQMPAWWMGEPWIVKKYIDEVFGLGAGVLFKNDGRTHE
                     NPSKNYGKGGLDHGKKYMFSLTWNAPLEAFNDKNEFFEGKGVDMVYWHLHKAHEFIGM
                     KALPTFMCNDVVKNPQVEKYLNEYELHLKKIF"
     gene            13103..13999
                     /locus_tag="ACHFOB_000568"
     CDS             13103..13999
                     /locus_tag="ACHFOB_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN5799384.1"
                     /translation="MTRTKYLYILLVIAMFLWGSSWPTSKILANYTDTSIITFWRFFF
                     VVLGSFFVLNFLKIPLKIEKTALKWVLIAGVLNGLYAFVFFIAIKHGLAGKGGVLVTT
                     MIPIFSYLIFMIAIFFQKNKKSTHKITKSEILGLFLGLLSGFCLLNLGSLEDLFGKFN
                     ILFLTCSFIWALMAVFNHKAKGAHPLAINFYINLISILMFSWILFDVKSYEIFHFEFK
                     FWISMFVVAFLSTIIGTSIYYYGIHILGSVKANSFVLITPASALICSYFILDEVPNAL
                     TLLGCALAIGAIYFINIYGKKA"
     gene            complement(13996..14961)
                     /locus_tag="ACHFOB_000569"
     CDS             complement(13996..14961)
                     /locus_tag="ACHFOB_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin-dependent carboxyltransferase family
                     protein"
                     /protein_id="HFN5799385.1"
                     /translation="MSIKIIEASINSSLQDFGRKKFAKFGIARSGAMDEDALRMANIL
                     LGNKQDEAGIELCLKGGKYEFLDENYFVLSGAEFEAKLDNQKIKTCKVYQANKGDILE
                     LDLAKIGFRGYLCVAGGFEVKSFLNSKSSDAKMGAGVFEGRALQKDDILNTHNTFIPF
                     NLEARECENPLFKSPKEPIIRVILGTNEDAFTQKGIETFLNTTYKVGLKSDRMAIYAE
                     SSESIEHKNSADIISDPAVFGSIQVPKSGIPIILMAGRQSTGGYTKIATVIENDLSLL
                     AQAKLGSSFKFQSISMQEALELYKQREMKFKAMDQKINLDFENLI"
     gene            complement(14942..15682)
                     /gene="pxpB"
                     /locus_tag="ACHFOB_000570"
     CDS             complement(14942..15682)
                     /gene="pxpB"
                     /locus_tag="ACHFOB_000570"
                     /EC_number="3.5.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing)
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-oxoprolinase subunit PxpB"
                     /protein_id="HFN5799386.1"
                     /translation="MFSVHFSGSKALLLRFEQEISPQINAYVLSTEQRIQKALKEGEI
                     YGIDELVSAYASLLIYFNPCVLSLNSLLDFLEKIKKDIKLAEQNSSLCIEVPLCYDEE
                     FGLDLEFVCKHNQISKEELISLHTKPYYLVFMLGFMAGFPYLGGLDERLFTPRLSSPR
                     AKIEAGSVGIADKQTGVYPISSPGGWQIIARTPLEFFDKEDEKNPTLLKAGMFLKFKA
                     ISKDEFFDIQEQVAKKVYQKEIYEYKNH"
     gene            complement(15692..16459)
                     /locus_tag="ACHFOB_000571"
     CDS             complement(15692..16459)
                     /locus_tag="ACHFOB_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LamB/YcsF family protein"
                     /protein_id="HFN5799387.1"
                     /translation="MFKVDLNSDLGESFGAYKMGMDEEILKFVSSVNVACGFHAGDPC
                     VMDETLNLAKQNGVCIGAHPSYPDLLGFGRRNMQISFEEAKNYALYQLGALFGFAKAK
                     GMKIQHFKAHGALYNMAAIDENLALALCEAVASFDENIIFLGLSNSAMNEAAKKKGLR
                     YANEVFADRAYNDDGTLVSRKLEGALIHDENLAIKRVIKMIKESKVTSINGKEIDLKA
                     DSICVHGDNAKALEFVKKIKENLKKEQIQICALENFI"
     gene            complement(16601..17410)
                     /gene="tupA"
                     /locus_tag="ACHFOB_000572"
     CDS             complement(16601..17410)
                     /gene="tupA"
                     /locus_tag="ACHFOB_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter substrate-binding
                     protein TupA"
                     /protein_id="HFN5799388.1"
                     /translation="MKKIISLALALALSASAAELKMATTTSTDNTGLLDALKPLYEKE
                     SGNTLKWVAVGTGAALKMGEDCNADVLFVHSPKAEKEFMKKGFGVDRTPVMYNDFIII
                     ADKSLASKFKGKNLKESLELIKNEKLTFISRGDKSGTDNKEKSLWKNLGGVPEKQSWY
                     QQSGQGMLASIKIAEEKKGVILTDRGTYIKYEANEKGKPNLVIVNEGDDSLKNFYSVI
                     ATNPKHCKNVNYTEASKFIKWVTSDKTLNFIADFKLLNKPLFVIDAKTRKD"
     gene            17489..18175
                     /gene="tupB"
                     /locus_tag="ACHFOB_000573"
     CDS             17489..18175
                     /gene="tupB"
                     /locus_tag="ACHFOB_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002874119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter permease TupB"
                     /protein_id="HFN5799389.1"
                     /translation="MDYIFDGFKQALFLLFNADESVISAIKTTLLSSSISIVLALLIG
                     FPLGFILGFFEFKLKRFIKLIVDTSLSFPTVAVGLILYALISSRGPLGEFGLLFTIKA
                     LILGQFILALPIVIALFSNLIENMNKKHFLLIKSFHLSPLKLVLTMIYELRFALISVV
                     ALAYGRIVAEVGVAMIVGGNIKYDTRTITTAISLETNKGEFASGIALALVLILIAFCL
                     NFITHKLKRT"
     gene            18177..>19154
                     /gene="tupC"
                     /locus_tag="ACHFOB_000574"
     CDS             18177..>19154
                     /gene="tupC"
                     /locus_tag="ACHFOB_000574"
                     /EC_number="7.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:1901238 - ABC-type tungstate transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tungstate ABC transporter ATP-binding protein
                     TupC"
                     /protein_id="HFN5799390.1"
                     /translation="MIEISNLFFNYQNKEVLKIKNLKLDTSKISILMGANGSGKSTFL
                     RILKFLEGDFSKNISYFGNFKPNNKQKREIYLLFPEPILLNRSVRANFLFTLKTYGIK
                     EDIEERIKESLMFLNLDESFLSKHPNELSSGQSQKIAFAIALSVRAKYYLLDEPSAFL
                     DKNTTLLFKKTILKMHENFNTGFLIASHDKHFLDSLAQKKLYLHSGEILEFENTNVFE
                     LENQGVKFCNFIDFSNCKKYKDFKKPPSKIAIDPYKISFFNSKNIPKNNYDFILEKCY
                     IIALRSRKSDVFIRVSCMDKILEFALEKQEFLRFDLKLYEELSLYFYEDA"
BASE COUNT         6891 a         2661 c         3249 g         6353 t
ORIGIN      
        1 tattataaaa taatatctac ttgattttta gtagtaaata tatttataat ttctagattg
       61 cattttttat gtaaaaatac ttaaaaagga gatattatga aaatagcaat tttatgtgca
      121 agcggtaaag taggcaaaga aatcagcaaa gaagctttaa aaagaaattt agagccagta
      181 tgttttgtac gcaatagctc taaaatgaat gaatttttac ctcaagctaa aatagtacaa
      241 agagatcttt ttgaacttga ttctaaagat ctgatagatt ttgatattat tattgacgct
      301 tttggagaat gggaaaattt aagcttacat aaaagcatat agaatgcttg agtgtaattt
      361 tacaaggaag taaggctaaa ttatttgttg tagggggtgc tggaagtttg tatatggatg
      421 agaatcatac tacaagactt atggatatgc ctgattttcc taaagagtat ttggatatag
      481 ctaaagcaag tgcggaagta ttggaatttt tacgcaatga aaaaggtttt aaatgggtat
      541 atgtgagccc atctgctatt ttttcaccag atcttccaaa aagcaatcat tataaaatca
      601 taggcgaaaa atttgaagtg aatgccaaca atgaaagtaa aatcagctat agtgattatg
      661 ctagtgctat gatagacata gtgcttaatt cttgctatga aaacacacgc attggggtaa
      721 taagcctata aataaagatg ccttatgctt ttaaggcatc ttttatttct tttaaatact
      781 tattttgaag ttttaaattt tcttctaaag aatttaaaat ctcttcgcta gttcttagga
      841 ttttttcttc ttttacattt ggatttttag cacttaaatc ataatttctt tcttcaagtt
      901 cttttttgct aagcagccaa gaattagcag tgatttttct tttctttgta gcattttaga
      961 aattccttaa aatgtgcgta ttctaaaggc ttgtttttag taagcttgta aggtggtata
     1021 agctcgtagt aatacacctt atcatcattt gcttttaaaa tactatttgt tatacttaat
     1081 aaaattattt aaggataaaa atggcaaaga aaaaagaaat aaaactagaa gatgcgttat
     1141 ggaaaagtgc tgataaatta cgcaaaaata tcgacgcagc agagtataaa cacatagttt
     1201 taggacttat atttttacgc tacattagcg atagctttat gcaaaaatac gaagagttat
     1261 taaaagaaca agatgatgga gccgacccag aagatgcaga tgaataccta gctgacaata
     1321 tcttcttcgt tccagaaaaa tctcgctaca actacataag agataacgcc aaaaatccca
     1381 aaataggcaa aatgctagat gaagcaatgg acgagataga aaaacacaac gatactctaa
     1441 aaggagtttt gccaaaagtc tatgccaaag ataacttaga tagtaaatgc ctaggcgaac
     1501 ttatagatct tataggaaat atcgcctttg acactggtaa aagcaccgat gttttaggtc
     1561 atgtatttga gtatttttta ggtgaatttg ccctagctga aggcaaacaa ggcggacaat
     1621 tctacactcc aaaatgcgtc gtagagctcc tagtaactat gcttgagcca tataaaggca
     1681 gagtgtttga tccttgctgt ggaagtggcg gtatgtttgt tcaaagcgaa gagtttgtaa
     1741 aatctcacca aggcagacta gatgacatct caatctatgg tcaagagtca aatcagacta
     1801 cctacaaact cgccaaaatg aacctagcca taagaaaaat cgaaagctca caagtgatat
     1861 ggaacaacga aggctcattt ttaaacgacg ctcataaaga cttaaaagcc gattttatta
     1921 tagccaatcc accatttaac gactcggact ggagcggcga actgttagaa aacgatggca
     1981 gatggaaata cggcgtccca ccagcaagca acgccaacta cgcttggata cagcactttt
     2041 tatatcatct atcaccaaac ggcggtgtag cgggatttgt cctagctaaa ggcgcactta
     2101 caagcaacac cacaaatgaa gcagccatta gaaaagcact tattgaagat gatttgatag
     2161 attgtatagt aaatctaccc gcaaagctgt ttttaaatac aggtattcct gcatcacttt
     2221 ggtttataag acgccaaaag ctaccaaaga cagtcaaaaa aacgcttttt atagatgcaa
     2281 gagatttagg aactaggata aatagacgca acaaaaccct aaacaaagac gatataaacc
     2341 aaatcgcaaa tatttataaa gcatggaaaa acggcactga ttatgaagac ataaaaggct
     2401 tttgtaaaag tgttagcata gatgagataa gagagctttc ttatgtgctt accccagggc
     2461 gttatgtggg gcttgctgat agtgatgatg agtttgattt tgatactaga tttaacgagc
     2521 ttttagcaaa gttaaaatcc caaatcaaaa ctgagcaaga gctaagtgaa attatcttaa
     2581 aaaacttaga gaagattaaa tgataaggac ggttatggat tttaaatttg tactaagatt
     2641 gttagaagca aaccaatttg agaatgaagt ggttgaatat aagaaaaata ataaagattt
     2701 tattgtatta ggaaaaaata tttctgcttt gtcaaataca gctgctttac tgggtataga
     2761 taaagcatat ataatttttg gcattgaaga tggtacgctt aatattgtcg gtacaaattt
     2821 taaaccaaaa caagaaaaaa agggaaatga agagcttgaa agttggttgc ataaagtttt
     2881 aaaacctaat atagaattta aaattcatga aataacggaa aaagaaatca ggttggtggt
     2941 atttgaaatt gaggcaacta agatttcacc aataaaattt gaagaaaaag cttatataag
     3001 gataggcagt aatagaaaag aattggataa atatccagaa aaagagaaaa aattatggca
     3061 agttctttca ggcttttctt ttgaaaatga aatagctaaa tcaaatttaa atattcaaga
     3121 tatatatgat ttattggatt acagtaagtg ttttgatatg ttagatatat cttacgataa
     3181 ttattcttca gatgaatata ttattgaaaa attaattgag catggtttag ttaaaaattt
     3241 gaatgattct tttgctatta ctaatttagg tgctatcttg tttgcaaaag atttaacaaa
     3301 atttaaaggc ttaaatagaa aaagaattag atttataagg tatcaaggta aaaacaaaat
     3361 tcatacatta gaagaattag aaggtagaaa aggatatgct attggttttc aaggattgat
     3421 ttcatatata atgcagtatg ttcctaaaaa tgaagtgata gagaatgcga taagaaaaga
     3481 tactacttta tatccagaaa tcgcaataag ggaacttgta gctaatgcga taattcatca
     3541 agattttaca ataaatggta gaaatccaat gattgaaatg tatagcgata gaatagaaat
     3601 aacaaacaat ggaaaatctc ttatagatat taaacgatta atagacatgc catcaaagtc
     3661 acggaatgat aagttggcta atttaatgag aataatgggt atatgtgaag aaaggggttc
     3721 tggtgtggat aaggttatag atagcgttga agcttatcaa ttgccagcac cagattttat
     3781 aaataatgaa gattattttc aggcaatttt attttctcat atgcccttag aagatatgac
     3841 caaacaagat agaataagag ctacatatca acattgttgt ttaaaatggg cttcaagaga
     3901 agccatgaca aatgctagct taagagctag atttaaaata ggtgataagc aacattcaaa
     3961 agcttcaaaa ataattagcg atactttaga ggcaggtttg attaagcagc aagatccaga
     4021 aaataaatct acaaaacatg ttaaatatgt tccatttttt gtttaggttt tatgtcatgc
     4081 tttcgtcaaa attatttaaa aatagcttaa attatatatc acatagcttt aaaatacgag
     4141 cttttagcgt tttttcttct gtcatgcttt cgtcattatc ttttaaacca agcttaaaca
     4201 aaggaaattc cgaatttaaa ttctcgaatt tatttcgtgt attttttgga ttttttacgc
     4261 aaataaattc caagggatta agatatgaat aattggaaaa aatgtaagct tggggatatt
     4321 gcagagataa caatggggca atctccaaaa tcagaatttt ataattttga taatataggt
     4381 atgccatttt tacaaggcaa taggactttt ggtaggaaat atccttattt tgatacatat
     4441 tgcactgaat ataaaaaaat agctaaaaag ggtgagattt tatttagtgt gagagctcct
     4501 gtcggagata ttaatttcgc aaacaatgat atttgtatcg gtaggggctt atgctccatg
     4561 aatgcaaaaa atggtgaaaa tgaattttta tattacttat tacacaactt aagaagtgtt
     4621 attataaata atgagtctgg tagtgttttt ggctcggtaa ataaaaatga tttacaaaca
     4681 atagaaattt tattaccgct attagaagag caaaggcaaa ttgctactat cttaagtagt
     4741 attgatgaca agatagaact actacacgag caaaacaaaa ccctagaaga actcgcccaa
     4801 actctttttt taaattggtt taaagataga gaatttaata gcactattag tgattttata
     4861 tctatgcaaa atggttttgc ttttaagagt aaagatttta tagattatgg taacaatgga
     4921 gtaataaaga taaaaaatat ttcaaatgga attgtagata ttgtaaatac tgataagata
     4981 agccaaaata ctataaatga agttaataac aaatttaata taaattctgg agatatttta
     5041 tttgcaatga ctggtgctga gataggtaaa atgggtatcg ttccaagtac aaataaaaaa
     5101 ttatggttaa atcagcgagt aggaatggta aaagaaaggt ttttaggagc taggttttta
     5161 gcatatatac atttaacttc tgaatttggt tatgactatg ttatcaattc agctactggc
     5221 agtgctcaag aaaatataag tgcgacagat attgaaaatt gtccatttgt taagcttacg
     5281 agtgaagaga ttgtgagtta ttctaaacaa ttaaatgatt tttttgaaaa aattatattt
     5341 aatctaggag aaattcaaac cctagaaaat atgcgtgata tacttatccc aaaactccta
     5401 aatggagaaa taaaaataac taactaaagg agaatgtgtg aataaatata agtttgtaaa
     5461 atttcaggtt aaaaactttc gttctttatt ggatattact ttaaatatag acaataataa
     5521 tataaataca atttgcggtg aaaataatat tggaaagact aattttttga gagccttaaa
     5581 tttatttttt aatcataata atggtgtgga gtataatcaa aatgaagata gaccatatca
     5641 tattcaaaag ggatcaactg gtggtagaaa aacagaatta ataggctatt ttacaaaaaa
     5701 taatgtcaca catattttaa aagttgaatt tcataaagat aagattgtgt atatattaaa
     5761 tggaaagatg gttgaatgga aagttgctag agatattgta gaaagtttta aacttttatt
     5821 tatagaagca agtaatgtga atatgcctag cgtaatttct gctattttag aaaacgatgc
     5881 tttgttagcc ttagataata aacgaaaaaa gcaaagtgag cctttaagaa cattgaaatt
     5941 attcatagaa caatcaaaga aagctataga agatatagaa aaggatatta atatatattt
     6001 aaaacaaatg ttagattttg ataacacctt aaaagacaag gaaataaaaa ttagatttgc
     6061 cgaatttgaa aaattaagag atgttgtaaa aactatgaca tctgttactt tagacgatgg
     6121 aaatgaccac ttaatggatc ataaagggag tggtgctcaa agaatagtac ttttatcttt
     6181 aatgcaatat attacagata aaattacaac agatataata tgggcaattg atgaaccaga
     6241 agcatttttg cagccaaaat tacaaaaaaa gattatggaa atatttaaaa atattgtaag
     6301 agagaaaaag cagcctataa ttatgacaac acattctcaa tactttgtag attttaataa
     6361 tttagtcaat actcatttgt ttaaattgac aaaagaagaa aagatttatg ctagaaaaaa
     6421 aggtagagta tttcaagaaa ttaacacaaa accgatttat ataggcactg cgtttgaaaa
     6481 gttatctgtt attaaaaaac atttaggtat agaaaccaat gataattggg atattatgcc
     6541 ttataatatt ttagttgaag gagaagaaga taagaaatat ttgcaaatgc taatagaaat
     6601 tttaaattta tctatgccaa atataataca ttctggtggt gcaactaaaa tagcaggttt
     6661 tttagaatat tttaataatc agtgcagtta tacttctttt aaaccatatt ttatatgtat
     6721 ttttgataac gatgaagaag gtagaaaaca atacaataaa atatcaaaag ataatttata
     6781 tccaaacata aagctagatg caaaaaaatt aaaaagatat ggagaatcga tacaagaaaa
     6841 taatagagat atttgggaga ttgaagattt catgcctata aaaataatag tagatgcagt
     6901 taatattata cttaagtata aacaatacaa tacgataaca aactctcaga taagtgatag
     6961 aaaaaaacta gcatttaaaa atatgtcaat tttggattat ttagaaaaat gtattgctga
     7021 tagaaatgaa gagaaagaaa gatttatatt aaacactgaa tcaagaaaaa aagaaatttg
     7081 ccaaaacgca tttagggctc gtgaaaaata tacaaaaaat gatttagaag attatcatgt
     7141 tgattttatg aatgaactta ttgatagctt taacaaagta gatttgataa aaaaggataa
     7201 ctaaaaatga gcaaggcgaa gactagtgag tttgatttag agcagtttgt tatatcatca
     7261 ctacttgagc atgggtggtg ctatgaaaag cctgtaagag ccactgatga agttttgcta
     7321 gaaactagcc ttgtaaatgc actttgtagg ctaaatccac agcttgattt atcaaaagct
     7381 aatgaaattt ataaggagct aaaaagcaaa aatcatctta gccttttaga tagcaatgaa
     7441 aactttcatt ataagcttgt aaatggggta aatataaaca ctacaaaaga cggcgaaagc
     7501 agagctgata tcataaatct aattgatttt aataatgcaa gcaacaatga atttatagca
     7561 acaaaccagc taagcatcac agaagctaaa gaaaacaaaa tccccgatgt agtgctatat
     7621 ataaatggaa ttccgcttgt tttaatggag ctaaaaagcc caagcgatga aaacgccacg
     7681 ataaactcag cttataatca aataaacact tataaacaaa caatcccaag tatttttaca
     7741 tataatgctt tttgtgtgat aagcgatggg tattttgcta gggcggggag tatttcggct
     7801 gatttttcaa ggtttatggc gtggaaaagt agcgatggga taaactacgc tccaaacaag
     7861 tctttagaaa ttaaaacctt aatagatggt atgctaaatc caaaaacctt gctagatatc
     7921 atttgcaatt tcatagtttt tgaaaaagag caaataagag atttaaatgg tattttaagt
     7981 ataaaaacta ccaaaaaaat cgcttgctat catcaatact acgcagtaaa taaagccatt
     8041 agtagaacaa tcacagcaag tagcaaagac ggagataaaa aaggtggcgt ggtgtggcat
     8101 acgcaaggta gtgggaagtc tttgtctatg gtgttttata gtgctaaagc gataaaggct
     8161 ttaaataatc ctacgatttt gcttatcacg gatagaaatg atctagatga tcagcttttt
     8221 ggtacttttg caagttgtgc gaacctttta agacaagagc caaaacaagc aaacgataaa
     8281 gagcatttaa aagagctttt aagggtagct agtggtggag tggtatttac tactattcaa
     8341 aaatttagtc cagaaaatga taatgtattt gagtgcttat cgcttagaga taatatcatc
     8401 gtaattgcag atgaagcaca cagaacccaa tacggctttg atgcaaaagt agtagaagaa
     8461 aagtcaaaaa gtggcgatgt gctagggcaa aagatagttt atggtttcgc aaaatatctg
     8521 cgtgatgctt tgccaaatgc tacttatata ggatttacag gaacgccaat tgaaagccat
     8581 gatataaaca cccctgcagt ttttggaaac tacatagata tatatgatat atcaagagct
     8641 gttgaagatg gtgctactgt gagtatatat tatgaaagca gacttgccaa aatagagcta
     8701 agcgaagaag gaaaaaggct tgtaaatgaa ttagatgaaa agcttgaaaa ccaagatagc
     8761 caaaaagcaa aagctactaa gctagaagct ttagtaggta gcacaagcag actaaaacaa
     8821 atcgctaaag atatagtaaa acactttgaa acaaggtcta gtaagctcgg cggaaaaggt
     8881 atgatagtaa gtataagccg aagcgtagct ataaaactat atgatgaaat cataaaaata
     8941 agaccaagtt ggcatagcga tgagctaagt agcggggcta taaaagtagt gatgacttca
     9001 agctctagcg atggggtaga gtttagtaaa catcatacaa gtaagattca aaagcagttt
     9061 ttggcaaatc gtatgagaaa tatagacgat gaattaaaac tagttatagt ggtggatatg
     9121 tggctaactg gctttgatgt gccatcgctt catactcttt atatagataa gcctatgaaa
     9181 gggcataatc taatgcaagc tatagctaga gtaaataggg tttataagga taaacctagt
     9241 gggcttgtgg tggattatct tgggattgca agtgatttga aaaaagcttt atcattttat
     9301 agtgaaagtg gtggcaaggg cgatataatc actactcaag aagacgctgt aaaagtgatg
     9361 atagaaaagc ttgaaatcgt agaacaaatg ctgccaaatg actatgaaaa atactttgaa
     9421 cttgatacgg gggctaaact tgaatatata cttgatgtag aagagcatat attatcaaat
     9481 gaagatggta agaacagatt tataaaagaa tttgcagcac ttgataaagc ctacacgata
     9541 gctatgccac acgaaaaagc tttgagcata aagaataaaa tcgcttttat gtatgcgata
     9601 aaggctaggt ttttaaagtt tgctaaagaa aatgagaatg aaaatttgct taatcaagct
     9661 ttgataaagc aagtagtaga taaagctatt gtatcatcta aagtggtgga tatttttgat
     9721 gctagtggta taaaaaagcc tgatatatct atactttctg atgagttttt actagaagta
     9781 aagaatatga agcgtaaaaa tttagccttt gaaatgctaa aaaagatact aaatgatgag
     9841 ataaaagcaa gagaaaagct aagcctaaca aaggctaaaa aattagcaca aatgcttagt
     9901 gatgctatca aaaaatataa caataagcta atctcatcaa gcgaggcact agatgagcta
     9961 ataaatatga gtaaaagcat agtaagtatg gaagatgagg ctaagaagtt aggtttaaaa
    10021 gactatgaat acgcctttta ctcagcactt gcttgtaatg atgagtatga aaagatttta
    10081 ggcaatgaaa aactattagc actcgttagt gaaatactgc aaattatcaa aaacaatgta
    10141 agtatagact ggatgataaa agaaaatgta agagcaagat taagagtagc tgtaaaaaga
    10201 gtgttaaata agtatggtta tccacctgat atgcaacaac ttgcaattga tggagtttta
    10261 gctcaagctg aaattttggc taaggaatta gctaacgagt agaatttaag cgatactgaa
    10321 attaaatttg tttgtattat tttcttttat ctttattata gatagcttga tttgtcgttg
    10381 caactatgtc tttgttataa aatttgctta attttataca atttcactag tatccagtat
    10441 ttatactaat ttttaaaaaa ttattttcac tcttgactta tagctactct aatgttttat
    10501 aattataaaa aatcaaaaaa ggagcaaaaa tgcaatacaa aattttagaa aacaatcgca
    10561 tcgcaagtaa aggctatgca atgcttagca aggatgcgaa atttacaccc tttgaattta
    10621 gccgccatgc tattggcgat aatgatattt tgattaaaat cctatatgca ggcatttgtc
    10681 atagcgatat tcacaccgca agaagcgagt ggggagaagc tacttatcct tgcgtgcctg
    10741 ggcatgagat agcaggagaa gttatcgctg tgggtaaaaa tgtgagtaaa tttaaagtag
    10801 gagattacgc aggggttggt tgtatggtaa attcatgcgg tgagtgcgat gcttgcaaac
    10861 gctcacaaga gcagttttgc gaaaatggca aaaccatctt tacttacaat agttgtgatg
    10921 tatttcatgg caatgaaaac acttatgggg gctactcaaa caacatagtt gtaagtgaaa
    10981 aatttgccgt ttgtgtgcca aaagatgcac cgatggaaaa agtcgcgcct ttgctttgtg
    11041 caggaattac cacttattct ccgcttaaat tttcaaatat caaagaaggc tcaagcgtag
    11101 cagtagcggg atttggcgga cttggtatga tggcggttaa atatgctgtg aaaatgggtg
    11161 caaaggttag cgtttttgct agaaatgaaa acaaaaaagc cgatgctttg gctatgggtg
    11221 taagctcatt ttacacaagc tgcgataaaa acgctgtaaa agaacgtttt gatttaatca
    11281 tctcaaccat tccaacgcct tataatcctg ctatttattt ggatttgctt aaatttggcg
    11341 gtgaaatggc gatagtgggt ttgccacctc acgaagttgc tccaagtatc agcgtgataa
    11401 cctttgtaca taaggcaggt aaaaaggttt atggctcgtt aattggtggt attgctgaaa
    11461 ctcaagaaat gcttgatttt tctttaaaac acggaattta tccagaaacc gagcttatta
    11521 ccccacaaga aatcgataaa gcttatgaaa atctaacctc aggaaaggct aaatttcgct
    11581 atgtcattga tatgacaaaa gaataattta atacttatca aaaaccacat cgctaatgtc
    11641 aaatcccctt tgcttagcga tgtttaaaag ctcttttata tttttttcat ctattatatt
    11701 tcttgctaaa atccaaagat attttttatc aggactaccc acaatggcaa ctttatactc
    11761 gctatcaaca aaaatgattt cataatttac tttattaaaa aggttcataa agatgttaaa
    11821 tctcactgct aattgcctat ttgaaacgat ttttgcctta ccctttatac ttgaaatttc
    11881 atttttttta ctgcaaaaat tctcaatttc tacataagga atgccatttt tgtatttaag
    11941 ctcgtatttt gcctttgaat ttaggcaaga tttttgaaaa aaggccggtt ttctagctat
    12001 ttcaagccat tctcccatat aattttgcaa agaaagttcg ccaattaatt caagcatttt
    12061 ttcccttttt tgtctttctt gccccatttg ctcatagctt gtaaaatggg aattaaactt
    12121 tgtccacgtt tggataagct atattctacc ttgggtggaa tttgagcgta ttcttttctg
    12181 ataattaaac catcgttttc tagttctctt aaggtattgg ttaaagtttt aaaagatatg
    12241 gagcttaaaa agcgtttgag ttcattataa cgcacgattt catagcgaaa taagcagtat
    12301 aaaatactca ttttatattt tccattaatt aatgctagag tatagttaaa tccacattct
    12361 tcgaaattgc acggagaatt ctctttagtc atttaacatt cctttagtat agtatattac
    12421 tttattttct gtattgaaaa tgatattatg ctaagttata attgtatcat aaaatttaaa
    12481 aaaggataaa aatgaaaaat atactcttgc ttaatggtgc taaagaattt ggaaattcaa
    12541 aaggacaact taatttgaca ttgcataatc atgctttaga aattttaaaa acactaggat
    12601 acgaggtaga tcaaactcac atagatcaag gatatgatcc taaagaagag atgcaaaaat
    12661 ttataaaagc tgatgctgtg atctatcaaa tgccagcttg gtggatgggg gagccttgga
    12721 tagttaaaaa atatatcgat gaagtgtttg gtttgggtgc tggagtgctt tttaaaaatg
    12781 atggaagaac tcatgaaaat cctagtaaaa actacggaaa aggtggttta gatcatggta
    12841 aaaaatacat gttttctctc acttggaatg cacctcttga agcctttaat gataaaaatg
    12901 aattttttga aggaaagggt gtagatatgg tgtattggca tttgcataag gctcatgaat
    12961 ttataggtat gaaagcttta ccaactttta tgtgtaatga tgtggtaaaa aatcctcaag
    13021 tggaaaaata tctaaacgag tatgaactac acttgaaaaa aattttttaa aaaatttgac
    13081 ttaaaaattt caaggtgtaa cattgactcg aacaaagtat ttgtatatct tgcttgttat
    13141 tgctatgttt ttatggggct catcttggcc aacatctaag attttagcaa attatacgga
    13201 tacttctatt attacctttt ggcgtttttt ctttgttgta ttgggttcat tttttgtttt
    13261 aaacttctta aaaattcctc ttaaaatcga aaaaactgcc ttaaaatggg tattgatagc
    13321 aggagtttta aatgggcttt atgcctttgt attttttatt gctataaagc acggcttggc
    13381 aggcaaagga ggagttttag taaccactat gattcctatt ttttcttatt tgatatttat
    13441 gatagcgata ttttttcaaa aaaacaaaaa atcaactcac aagatcacaa agagtgaaat
    13501 tctaggctta tttttaggtt tattatctgg attttgtttg ctaaatttag ggagtttaga
    13561 agatttattt ggtaaattta atattttatt tttaacttgt tcttttattt gggctttgat
    13621 ggcagtgttt aatcataaag ccaaaggagc tcaccctttg gcgattaact tttatattaa
    13681 tctcatttct attttaatgt tttcttggat attgtttgat gtaaaaagtt atgaaatttt
    13741 tcattttgaa tttaaatttt ggatcagtat gtttgtcgtg gcttttttat caactattat
    13801 aggaactagt atttattatt atgggattca cattttagga agcgttaagg caaattcttt
    13861 tgttttaatc actcctgcta gtgctttaat ttgtagttat tttatactag atgaggtgcc
    13921 aaatgcactt accttgttag gttgtgcctt ggctataggt gctatatatt ttatcaatat
    13981 ttatggcaaa aaagcttaga ttaaattttc aaaatcaaga ttgatttttt gatccatagc
    14041 tttaaatttc atttctcttt gtttataaag ttctaaggct tcttgcatgc taatgctttg
    14101 aaatttaaag ctagaaccta acttagcttg tgcgagtaag cttagatcat tttctataac
    14161 cgtggctatt tttgtatagc ctcctgtgct ttgtcttcct gccattaaaa tgataggaat
    14221 accacttttt ggcacttgta tacttccaaa aaccgcagga tctgagatga tatctgctga
    14281 gtttttatgc tctatacttt cactagattc tgcataaatt gccattctat cgctttttaa
    14341 acctacttta taagtagtat ttaaaaaggt ttctatgcct ttttgggtaa aagcatcttc
    14401 atttgttcct aaaataacgc gtataatagg ctctttaggg cttttaaaaa gaggattttc
    14461 acattctcta gcttctaaat taaaaggtat aaaagtatta tgagtattta aaatatcatc
    14521 tttttgcaaa gctcttcctt caaaaactcc agctcccatt ttagcatcac tggatttaga
    14581 gtttaaaaaa ctttttactt caaagccacc cgctacgcat aaatacccac gaaaacctat
    14641 ttttgctaaa tcaagttcta aaatatcgcc tttatttgct tgatatactt tgcaagtttt
    14701 gattttttga ttatcaagct ttgcctcaaa ttcagctcca cttaaaacaa aataattctc
    14761 atctaaaaat tcgtattttc caccctttaa acaaagctca attcctgctt catcttgttt
    14821 gtttccaagc aagatatttg ccattcttaa agcatcttca tccatagctc cacttcttgc
    14881 tatgccaaat ttagcaaatt tttttctacc aaagtcttgc aaacttgaat ttatagatgc
    14941 ttcaatgatt tttatactca taaatttcct tttgatagac ttttttagca acttgctctt
    15001 ggatatcgaa aaattcatct tttgaaatgg ctttaaattt taaaaacata cccgctttta
    15061 aaagagtggg atttttttca tcttctttat caaaaaattc caaaggtgtt ctagcaatga
    15121 tttgccaacc ccctggactt gatatgggat aaactcctgt ttgtttatcg gctataccta
    15181 cacttccagc ttctattttt gctctagggc ttgaaaggcg tggggtaaaa agtctttcat
    15241 ctaaacctcc aagataagga aaacctgcca taaaacctag cataaaaaca agataataag
    15301 gtttagtgtg aagagatata agctcttctt ttgaaatttg attgtgtttg cacacaaatt
    15361 ctaaatccag cccaaattct tcatcataac aaagtggaac ttctatacaa agacttgagt
    15421 tttgttctgc aagtttaata tcctttttaa ttttttccaa aaaatcaagc aaggaattta
    15481 aagaaagcac gcaaggatta aaatatataa gcaagcttgc ataagcactt accaactcat
    15541 caatcccata aatttcacct tcttttaggg ctttttgtat cctttgttct gtgcttaaaa
    15601 cataggcatt gatttgaggt gaaatttctt gctcaaaacg caaaagcaaa gctttacttc
    15661 cactaaaatg cacactaaac attgctaaaa cttatataaa attttccaaa gcacaaattt
    15721 gaatttgctc tttttttaaa ttttctttga tttttttaac aaattctaaa gcttttgcat
    15781 tatccccatg aacacaaata ctatcggctt ttaaatcaat ttctttgcca tttatgcttg
    15841 taactttgct ttcttttatc atttttatca cgcgtttgat agctaaattt tcatcgtgta
    15901 ttaacgcccc ttctaatttt cttgaaacta aagtgccatc atcattatag gcacgatctg
    15961 caaaaacttc attagcatat cttaaaccct ttttcttagc tgcttcattc atagcagaat
    16021 tactaagccc tagaaaaata atattttcat caaaactcgc cactgcctca caaagtgcta
    16081 aggctaaatt ttcatcaata gctgccatat tataaagcgc cccatgggct ttaaaatgct
    16141 gtattttcat accttttgcc ttagcaaagc caaataaagc tcctagttga tacaaggcat
    16201 agtttttagc ctcttcaaag cttatttgca tattgcgtct tccaaaaccc aaaagatcag
    16261 gataagatgg atgtgctcct atgcaaacac cattttgctt ggctaaattt aaggtttcat
    16321 ccatcacaca aggatcaccc gcatgaaagc cacaagcgac atttactgaa cttacaaatt
    16381 ttaaaatttc ttcatccatt cccattttat aggcgccaaa actttcccct aaatcactat
    16441 ttaaatccac tttgaacatt atttgacctt gtatatttaa ttattgattt tattatatct
    16501 aaagaagaat tttaaataag ctaaaagttt tgaaaaataa ataaaaaagt tacaataagt
    16561 aaaaaatgat attttaagca ggttaaaacc tgcttaattt ttagtctttt cttgtttttg
    16621 catcaattac aaataaaggt ttattaagaa gtttaaaatc agcaatgaaa tttaaagtct
    16681 tatcacttgt tacccatttg ataaatttac tagcttctgt ataatttaca tttttacaat
    16741 gcttaggatt tgtcgctata acagaataaa aatttttaag actatcatcg ccttcattta
    16801 caatgactaa gtttggtttg cctttttcat tggcttcata tttgatataa gtaccacgat
    16861 cggttaaaat cacacctttt ttttcttcag cgattttaat gcttgctaac ataccttgtc
    16921 cgctttgttg ataccagctt tgcttttcag gaacaccgcc aagatttttc caaaggcttt
    16981 tttctttatt gtcagtgcct gatttatcgc ctcttgagat gaaagtaagc ttttcatttt
    17041 tgataagttc taagctttct tttaaatttt tacctttaaa tttagaagct aaagatttat
    17101 ctgcgatgat gataaaatca ttatacatca caggagttct atctacacca aagccttttt
    17161 tcataaattc tttttcagcc tttggagaat gcacaaaaag cacatcagca ttgcaatctt
    17221 cacccatttt taaagccgca cctgttccta cggcaaccca ttttaaggta ttgccacttt
    17281 ctttttcata aagaggtttt agagcatcta aaagtcctgt attgtcagtg cttgttgtag
    17341 ttgccatttt aagttctgct gcacttgcac ttaaagctaa agcaagggct aaagaaatga
    17401 tttttttcat tttttttcct tataaattta tataaaaaaa tattttagca taattatgct
    17461 aaaattactt attttaaaaa ggatattttt ggattatatt tttgatggtt ttaaacaggc
    17521 tttattttta cttttcaatg ctgatgaaag cgtaatttca gctataaaaa ctacactttt
    17581 aagctcaagt atttctatag ttttagcttt gcttataggt tttcctttgg gatttatctt
    17641 aggttttttt gaatttaaat tgaagcgttt tataaaactt atagttgata ctagcctttc
    17701 ttttccaaca gttgcagtag gacttatact ttatgcactg atttcaagtc gaggaccttt
    17761 gggagaattt ggattgcttt ttactataaa ggctttaatt ttagggcagt ttatcttagc
    17821 gcttcctata gtgatcgcac ttttttcaaa tttgatagaa aatatgaata aaaaacattt
    17881 tttacttata aaatcttttc acctaagtcc tttaaaactt gttttaacga tgatttatga
    17941 attacgcttt gctttgatta gcgtcgttgc actagcttat ggacgcattg tagcagaagt
    18001 aggagtagcg atgatagtag gtggaaatat caaatacgat actagaacca taaccacagc
    18061 tatttctctt gaaacaaaca aaggcgaatt tgctagcggt atagctttgg ctttggtttt
    18121 aattctcatt gccttttgtt taaatttcat cacgcacaaa ctcaaaagaa cataaaatga
    18181 tagaaatttc taatcttttt ttcaactatc aaaacaaaga agttttaaaa atcaaaaatt
    18241 taaaacttga tacaagtaaa attagcatct taatgggagc gaatggaagt ggaaaatcta
    18301 catttttaag aatattaaaa tttttagaag gagatttttc aaaaaatatt tcttattttg
    18361 gaaattttaa acctaataat aagcaaaagc gtgaaattta tttgcttttt ccagagccta
    18421 ttttgttaaa tcgtagtgta agggcaaatt ttttatttac cttaaaaact tatgggatta
    18481 aagaagatat tgaagaacgc ataaaagaaa gtttgatgtt tttaaattta gatgaaagtt
    18541 ttttaagtaa acatcctaat gaactttcat caggacaaag tcaaaaaata gcttttgcta
    18601 tagctttaag cgtaagagcg aagtattatt tacttgatga accaagtgct tttttggata
    18661 aaaatactac acttttattt aaaaaaacta ttcttaaaat gcatgaaaat ttcaatacag
    18721 gttttttaat cgcaagtcat gataaacatt ttttagattc tttggcgcaa aaaaaacttt
    18781 atttgcacag tggagaaatt ttagaatttg aaaatactaa tgtttttgaa ctagaaaatc
    18841 aaggtgtgaa attttgtaat tttatagatt ttagtaattg taaaaaatat aaagatttta
    18901 aaaaacctcc aagcaaaatt gctattgatc cttataaaat ttcttttttt aattctaaaa
    18961 atattccaaa aaataattat gattttattt tagaaaaatg ttatattata gcacttagaa
    19021 gtaggaaaag tgatgttttt ataagggtaa gttgtatgga taaaatttta gaatttgcct
    19081 tggaaaaaca agaattttta agattcgatt taaaattata cgaagaactt agtctttatt
    19141 tttatgaaga tgca
//
LOCUS       DAZBIH010000019        19112 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.019, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000019 DAZBIH010000000
VERSION     DAZBIH010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 19112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 19112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..19112
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.019"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            90..1154
                     /gene="mqnE"
                     /locus_tag="ACHFOB_000575"
     CDS             90..1154
                     /gene="mqnE"
                     /locus_tag="ACHFOB_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminofutalosine synthase MqnE"
                     /protein_id="HFN5799391.1"
                     /translation="MKNLITKLENEERLNQEEANALWDLDLFILGKYAHKKRTKLHGK
                     KVYFNINRHINPTNICADTCKFCAFSAHRKNPNPYLMTHEEIMKIVDETVKRETKEVH
                     IVSAHNKDTTWQWYLEIFKMIKEKYPNLHVKAMTAAEINFLHRRFKMSYEEVIEKMLE
                     YGVDSMPGGGAEIFDEEIRAKICKGKVSSENWLKIHKIWHQKARQSNATMLYGHIEKR
                     EHRIDHMLRLRALQDETGGFNAFIPLVWQKDNSFLDVKEQLDSEEILKTIAISRLVLD
                     NIKNIKAYWATMSLKLAMVAQEFGANDLDGTIEKESIQSAGGAKSARGTSLQTFIELI
                     KTSNLIPVERDSLYNELKIY"
     gene            1216..4581
                     /locus_tag="ACHFOB_000576"
     CDS             1216..4581
                     /locus_tag="ACHFOB_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HFN5799392.1"
                     /translation="MKKSIFLSFIIVFNGYALSDQELIGSKEAYKLTITGDGINVGVI
                     DSAINGEHPSLKGKVLEQTFSTVNGKTYTPDYSVDTHGSHVAGIIGAKYIDENKPHGV
                     AYNAKLYGVQIFGNNKGSGSFNAPNVYDYFKDKDVKIINNSWNSTTYPVVSMTQTGLY
                     LDAYKNKSSNELFEQIQQNSTAKQLNQLTKENKTLVVFAAGNEGIISPGIMALSPLYN
                     EELRSFLAVGSVDSSQITKNQDGKLVVNGRGLSGFSNGLLGAENFSLVAPGSNIKNVN
                     AAYMQKSSFGRVDKDLYRTQSGTSMAAPMVSGAAALVAQRFPFLNGKQIADVLLSTAN
                     KDYIAPKLTVKETKLKVVEYLGKRPILMEKTFHTIFYIDTDIPKKADGSVDKEQVKRD
                     LSQAGYSRFYTPITEYHGVDESKYASIQKVSKESLFGQGILDVTKAMKGLATLDANRL
                     NNSDVSNTYAGQNEAYYTIDTQGYEAIFSNNISQKKWDGSLHKKDAINLPTNLANLNV
                     GFIKEGSGKLILTGNNSYEGVTIIKKGSLALNNKSENEKARIAGNVKVLEGGLFSGNG
                     EVGKNLENKGIVRPGNEDLSDLIIEGKYTQEGQNSKLQLDFGSHKNSKLIANSYEIKG
                     GKLEYIPLPNFFTSGHYVSIDLGDLGTCLSSFGAVEVVSNNAVDFVAVLDSDKTSINK
                     DKMPQPAPQPQPTPQPDITNPQPPVTQPSPITPPPTTTPPTTTPPPNHIIVKPVIKKD
                     AYESANSTMGRSLRSIRSMHNLQDRYKDYFAFLDNTDTKTMEKTLESLEANSYMQSAS
                     GLYYQQHILAQRNIMNALNPSFTSGNLMASLEKDPLLTASIESDVFMDLGLLDKMDKR
                     YIWNLSPNYKKINGDNFDGRSTGLNLTIGGELNENSLLSFGLDVSDTRLDFENANLKN
                     KYFNFSFNHILDLQNFKILSSASLARASNDMTRTIIGQNGSLSSNYDNLLSSLQLGLA
                     KDFQVFNNLTLTPLAYFNYNFIKQDAFSENGNLVFAKSYDAINHHTTSLAGGLNLSYL
                     FDREAMQTKLGSFFIYEYKLSGKTIENNVRFKDFPNQDFVQYHRLNSNLITWGLTSYF
                     IYPNSFFYGFNVVNEFASDQYNINVLGQFGFYF"
     gene            4628..5947
                     /locus_tag="ACHFOB_000577"
     CDS             4628..5947
                     /locus_tag="ACHFOB_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015205 - nucleobase transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HFN5799393.1"
                     /translation="MSIFKLKENGTNIKTEVLAGITTFLTMIYIVPVNSHIVSNTGMP
                     LEALITATALITIIASALNGLFANTPVAMSVGMGMNAYFTFSVCIAQQIPWQSALGAV
                     FLSGLIFLILSFTNFRLWIIRNIPKDLRLAICAGIGCFIAFLGLSQMGVIMHNKDTLV
                     SIGNFKSPHVLFGIFTLALIIFFWAIKLRGAFILGVLVSSIIVWIFHLDNASFPVQIF
                     SWPNFSMENGLRAIFLQLDIKSALNITMIPIILTFFITQLFDSIGTITGVGERGKIFD
                     DPKNGEKKLSKTLMADATGSALGAMTGTSTVTAFVESTTGVESGGRTGLTALVVAICF
                     AFTLFLLPLFKAIPANAIYPVLVMVGILMFMEVKNIDFKDSAIAVASFFTIIMMPFTY
                     SITTGFAFGFLSYLLVRIFKREWDKINLGIIVLSLLSLGNFLLMALQ"
     gene            5961..6404
                     /locus_tag="ACHFOB_000578"
     CDS             5961..6404
                     /locus_tag="ACHFOB_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase"
                     /protein_id="HFN5799394.1"
                     /translation="MIFYSYEEFKEDVKILAKEIKKDFNPDALLAIARGGMSLGHSLA
                     VALKTRQLFALNSIHYDDTKKLDTIEIFNIPDLSKYKKILLIDDIVDSGESLAEIKKV
                     VLEKFPHIELKIATIFYKKTALLEPDFKVKEATEWVDFYWDINLD"
     gene            6449..7147
                     /locus_tag="ACHFOB_000579"
     CDS             6449..7147
                     /locus_tag="ACHFOB_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VacJ family lipoprotein"
                     /protein_id="HFN5799395.1"
                     /translation="MKIKFISFILIFFAIFAFAKEQNSDDFEQEYQNYQVNDPLSGYN
                     KAMTSFNVALYDYGLRPVLKGYNAITPEFIRLGVRNFFDNLLAPLRFVGNVLQFKFEE
                     AGEEFKRFTANTIMGFGGLMDVASKMSLKKHPADLGTVLAHWGVGSGFHIVLPILGPS
                     NLRDTLALPATWYASFTAYIDPTWASIAISAYGFGNELSFRLDEIDEIYHNTPNLYPF
                     LRDAYEQRRNELSK"
     gene            7157..7726
                     /locus_tag="ACHFOB_000580"
     CDS             7157..7726
                     /locus_tag="ACHFOB_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN5799396.1"
                     /translation="MKKIFLILALFFNAFALQLDEISSTMQKNIDASLKLLQDSKEDK
                     KQAADGIFKLFDSIIDYKLMAKLSLSKNYSKLNPKEQEKFTTAFEASLKKSFTDKLSL
                     YKDQVLKVKNGELKNEKRYFLTTSMVVDGEEKNIIFKFYNDNNNWLIYDVDVLGVSIV
                     QTYRSQFRDILANQGFDALLQKLESIVIE"
     gene            7726..10197
                     /locus_tag="ACHFOB_000581"
     CDS             7726..10197
                     /locus_tag="ACHFOB_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RND family transporter"
                     /protein_id="HFN5799397.1"
                     /translation="MFAKLLKFFISRPKSTFFGTLFICLFLSFFAFKLSVDASAESLL
                     LEDDTDLKTFREISKHYKSDNFLLLAFKPYDEKPFSNENLAKLKKLHEELEKAPLVER
                     VFSIINAPLLQSSQNTDLKELLKNIPNIESQDINRTKARNEILNSPFYKNNIISKDGK
                     VTGLIIYLKPDTVYNDLVEKRDLATDEKEKDQIRLAIKKHQDKQKVITKQSLDTIKSI
                     VRNYEKNKDTLYLGGVSMIADDMIAYIKSDLVLYGVSLVFLLGLALYYFFRSWRFVFL
                     PLFICFISLSAASGVFALLNFQITVISSNYVALVLIITLSVVVHLITHFIESTQNHPK
                     AKVERIVLETLLAKANPSLYAIVTTMIGFFSLIFSNIEPIIKLGIMMSMGIGLALIFS
                     YLFLASILVLLKPKNYHKKEFKFNLLAFCAKTALDPKKRRMIYGISVLAIILALIGIS
                     KLRVENSFVNYFKDGSEIKKGLLVIDKNLGGTLPLEVIIRFPNNKNDQNTSDTLDSFE
                     SEFENLATQETYWFDSKKTRIAKKVHEFLENKEFVGSILSLNSLLTLGKNINDGKELD
                     DFALAFLNENLPAKFKQDLLSPFVSIENNELRFSMRIVDSDPNLRRNEFLIDLKKQLN
                     ELVKNDGVEVQITGIMVLYNNMLQSLFSSQFDTLIFVILAIFILFIIVFRDLKFSVAA
                     ILVNVIPLSVVFALMGLLGIPLDMMSITIAAIAIGIGVDDAIHYIYRFREEIKNKSLE
                     EAIMISHLSIGSALYYTTISIVLGFSVMMSSNFIPTIYFGILTVFVMILLLSGSLFLL
                     PSFLITIYSKKTKFPNQHKEHILKQ"
     gene            complement(10228..10830)
                     /gene="rdgB"
                     /locus_tag="ACHFOB_000582"
     CDS             complement(10228..10830)
                     /gene="rdgB"
                     /locus_tag="ACHFOB_000582"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0035870 - dITP diphosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0036222 - XTP diphosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RdgB/HAM1 family non-canonical purine NTP
                     pyrophosphatase"
                     /protein_id="HFN5799398.1"
                     /translation="MKIILATSNKHKVLELKEILKDFEIYAFDEVLMPFEIEENGKTF
                     KENALIKARAVFNALDEKQKKDFIALSDDSGICVDVLEGNPGIYSARFSGKGDDKSNR
                     DKLVNEMIKKGFKQSKAYYVAAIAMVGLMGEFSTHGTMHGKVIDTEKGENGFGYDSLF
                     IPKGFDKTLAQLSVDEKNNISHRFKALELAKIILKILNKG"
     gene            10997..12298
                     /locus_tag="ACHFOB_000583"
     CDS             10997..12298
                     /locus_tag="ACHFOB_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5799399.1"
                     /translation="MLNNVLPLSFIVGTRFFGLFIVLPVLSLYALKLEGANEFLVGLL
                     VGVYALTQMILQMPFGILSDKIGRKKTMLIGLIIFIIGSLICSFAENIYTMLLGRMLQ
                     GAGAIGAVATAMISDFITEENRGKAMAVMGSFIGLSFAASMVISPLMSAKWGLSSLFD
                     LSAALSLLCIILLYTVVPKENKITHENEKTPFFHLIKQKNLALMNLTNFMQKMLMSIA
                     FLSIPIILVKHLGFASDKLWIVYSASMVAGFIAMGFAGSLGEKRGLAKQILLLGIVFF
                     ILSYLFFAFSNSMDFFITAVVIFFIGFNLHEPIMQSCASKFCKVHEKGAALGLFNAFG
                     YGGSFTGGIIGGIFLHLDALNLLAIILVILALIWLVALFFLKNPADFKNLYLPLETPL
                     NFSTFGENLGVVDIYKNSKNLVVKFDSKLTNKEELEGKIKI"
     gene            complement(12301..13974)
                     /locus_tag="ACHFOB_000584"
     CDS             complement(12301..13974)
                     /locus_tag="ACHFOB_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002902449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5799400.1"
                     /translation="MQDFVYIKNDVLIPLPDAIEILDQANDKEALICNDKNQKAQIYA
                     PEINFYLKNSQDEILEQSKNVLTLYEARASVYDLGLDLEQSKEVQNRLIVADGDAQTV
                     EFLKEHEFKVIALSSAEILAVFGSVGELCAVVKNQGEEVEIDFDFLLFKAEDLSVVRK
                     DFTRQSGCYNLLNFENLEVLLEFLQSKSPKYHYKTYISYNASVCQYHERRSEHCAKCA
                     EICPTVAILKDDENKHLEFSQVDCLGCGGCISVCPSGSLDYAPMPRESFFTLCEFYKD
                     KKILIIPKKMSLENLNLALPKDVLPFMIEGEKWLSSMHFLTLLQNSGANLVFYTDFVS
                     RGSNEAIVLLNTFFERKFQKKAIFVAKDEKELQNVLKEQEFIQDLKYDFHNNTLTTRE
                     NFAKRMQEMIKNEDFGSMESGEWLRYGKVEINPNTCTLCLSCVGACNVGALIADKQEN
                     ALKFNASLCTTCGYCELSCAEKDTLKLFRSGMEFRASYFEYQTMAKDELFACIECGKE
                     FATKKAVEKIANLMKPKFGNDENKIKTLYCCADCKAKVMIKAMGFAGQN"
     gene            14052..15374
                     /gene="selA"
                     /locus_tag="ACHFOB_000585"
     CDS             14052..15374
                     /gene="selA"
                     /locus_tag="ACHFOB_000585"
                     /EC_number="2.9.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004125 - L-seryl-tRNA(Sec) selenium
                     transferase activity [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-seryl-tRNA(Sec) selenium transferase"
                     /protein_id="HFN5799401.1"
                     /translation="MNKFRTFPQINTLIEDESLKSYPFYIKAFFCKKVVAKLKENFFQ
                     DEISKDKLLLEIKKEIKTFYRKDLQSVINASGVVIHTNLGRSVIHEELYEACKDIICN
                     YSNVEFDLENGKRGSRYALVLEKLKMLFECEDALVVNNNAAAVFLVLNSLCYDKEVIS
                     SRGELVEIGGSFRVPEVIKAAGVKLCEVGTSNKTHLKDYEQAINENTALILKTHKSNF
                     ALMGFHSEVNIKDLHELAKEKELLSYYDLGSGWCENLNEKLIKNEPKIRKLVQECDIL
                     SFSGDKLFGSVQAGIILGKKELIEKLKQNQLLRMLRVDKLTLSFLNESLKAYLQKDYE
                     KIITLKLLNDDLSFIEKKALRVQKELKFQTQLKKSKSLVGGGSMPDKSLDTYILTFQG
                     DALKLQTRFRKENIIGRIENDEFVLDFRTIRENELQKLILTINQMENL"
     gene            15371..17176
                     /gene="selB"
                     /locus_tag="ACHFOB_000586"
     CDS             15371..17176
                     /gene="selB"
                     /locus_tag="ACHFOB_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0001514 - selenocysteine incorporation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="selenocysteine-specific translation elongation
                     factor"
                     /protein_id="HFN5799402.1"
                     /translation="MKSVIIGTAGHIDHGKTSLIKALNGFEGDSLKEEQERQITINLS
                     FSNLKLKDKNISFIDVPGHKDLVKTMVSGAFGFSVCLFVVDINEGLKEQSLEHLEILK
                     ILDIKNIILVLSKCDLCENIEQKSVEILEELKNLDYPILKVFHTSIKNNQGIEELKNY
                     LYTIENKENDEELIFHYYIDRVFSLKGIGTVVTGSLNEGSITLNEKIICLDTQKELIV
                     KNIQNHDTNLEQIKACNRVALSLNCDYKELKKGYLLSKKGCFKAFKECDALVKAKNLQ
                     NSKMIFCVGSRQIECKINILKKLENDEFFVHFSFDKNVFLSFDEAFILLQNNRVIGGG
                     KVLNPLSEPLKKEQKNKFLMFLKNKDFKAAFSFLKDAHKYGFGLLSSYQRFKLSHQKA
                     LKLAKELNQVFVDEKNLNVYHLQSLEEIKNFIKFILEKNPYAMLSAHSLALRITWASE
                     NFCELGLKEMSNLLDFQNGIYFKKGIDFEKLQEKNNNQMYEILKKQGIKPEAPYNLYD
                     FLELDRKSGDNILKKLTQKGLVVRLSHNLFIEKQALEKLMQECLNLLKNQSLDVQSMK
                     EYFNLSRKYAIAYLEYLDKFPQVSKEAEKRFLTNI"
     gene            17225..17935
                     /locus_tag="ACHFOB_000587"
     CDS             17225..17935
                     /locus_tag="ACHFOB_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HFN5799403.1"
                     /translation="MKKLSLILACSASLFAASNSEISDFYSKSIKAQFPNATVSVSNR
                     QKVGNTGFESVIVSVELNGQKQENILFTKDSLITPDLIDLKTGISYAQEYEMKKFQEA
                     RENFTKNAKAVAQKETMVIALGDKNKPAIYVFSDPECPYCREHLAQIDDELKNYQVNY
                     ILTPVHGKSAFEKSALIYKEAKKAKNDKEKIAILNKYYDANIKNYPKVSDAELKEVFS
                     LYEKYRSLGLSATPTIIK"
     gene            17941..18492
                     /locus_tag="ACHFOB_000588"
     CDS             17941..18492
                     /locus_tag="ACHFOB_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002877366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799404.1"
                     /translation="MSKFALILSFFIALFMSACTNATFIQSFIQTSNEGIFIRSQKQQ
                     SFKISFQNPSQLRTTLDRDLALKLKNLGLKEVKENADYEILINLVDMKKHSYAQKITT
                     SARFFYDFDPLESDGEWMVENYYTMQVNLQINSKNHNSQKTSLLARTAYLGNKERCQL
                     SLENKIINQIVSFFIFKKRQSRV"
     gene            complement(18515..19006)
                     /gene="fldA"
                     /locus_tag="ACHFOB_000589"
     CDS             complement(18515..19006)
                     /gene="fldA"
                     /locus_tag="ACHFOB_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin FldA"
                     /protein_id="HFN5799405.1"
                     /translation="MSVAVIYGSAMGNTEGAANTIASKLGISDVFNISDIDAAKMNSY
                     DKLICGTSTWGSGDLQDDWDGFDFSGLSLGGKTVAVFGMGDSESYSDTFCGGMGKLAQ
                     NLKDAGANLVGEVSTDGYTFEASDAVVDGKFVGLALDNDNQEDQTESRIDAWVEQIKP
                     YFA"
     gene            complement(19006..>19112)
                     /locus_tag="ACHFOB_000590"
     CDS             complement(19006..>19112)
                     /locus_tag="ACHFOB_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799406.1"
                     /translation="FTHFIEIKHFLCDLNKTMLKLVPYKISNQIIRRK"
BASE COUNT         6717 a         2884 c         3072 g         6439 t
ORIGIN      
        1 tcttttattt tggctttttc tataaactct ttttcagtaa gcaaaaatta taatgcttta
       61 tttaaaaaca gcaaaagagt aaaattaaaa tgaaaaattt aattaccaaa ctagaaaatg
      121 aagaaagatt aaaccaagaa gaagccaatg cactttggga tctagatctt tttatcctag
      181 gcaaatacgc ccataaaaaa cgcaccaaac ttcatggaaa aaaagtttat tttaatatca
      241 atcgccatat aaatcctaca aatatttgtg cggatacctg taaattttgt gccttttcag
      301 cccatagaaa aaatcctaat ccttatttga tgactcatga agaaatcatg aaaattgttg
      361 atgaaaccgt aaaacgagaa accaaagaag tgcacatcgt ttcagctcac aacaaagata
      421 caacttggca atggtattta gaaattttta aaatgataaa agaaaaatat cctaatcttc
      481 atgtaaaagc tatgactgct gctgagatta attttttaca tcgtcgtttt aaaatgagtt
      541 atgaagaagt gatagaaaaa atgcttgaat acggcgttga ttccatgcca ggcggcgggg
      601 ctgaaatttt tgatgaagag atacgtgcta aaatttgtaa gggtaaggtt agcagtgaaa
      661 attggcttaa aattcacaaa atttggcatc aaaaagctag acaaagtaac gccactatgc
      721 tttatgggca tatagaaaaa agagaacata gaatcgatca tatgctaagg cttagagcct
      781 tgcaagatga aacgggtggt tttaacgcct ttatcccact tgtatggcaa aaggataata
      841 gctttttaga tgttaaagaa cagcttgata gcgaagagat tcttaaaact atagccattt
      901 cgcgtttagt gcttgataat atcaaaaata ttaaggctta ttgggcgact atgagtttaa
      961 aattagctat ggtagcacag gaatttggag caaatgatct agatggcacg atagaaaaag
     1021 aaagcataca gagtgcagga ggtgcaaagt ccgctcgcgg aacaagtttg caaactttca
     1081 ttgagctgat taaaacctca aatttaatcc ctgtggaaag ggatagtttg tataatgagc
     1141 ttaaaattta ttaaaacata atataagttt tttagttaaa attcgtgtct ttaatcttaa
     1201 ggatataatg aaataatgaa aaaaagtatt tttttatctt ttataatagt ttttaatggc
     1261 tatgccctta gcgatcaaga gcttatcggc tcgaaagagg cttataagct aacgattacc
     1321 ggagatggga ttaatgttgg agttatagac tcggcgatca atggtgagca tcctagctta
     1381 aaaggtaagg ttttagagca aactttttct acggttaatg gcaagactta cacgcctgat
     1441 tactcagtag atacgcacgg aagccatgtc gcaggcatta taggggctaa gtatattgat
     1501 gagaataagc ctcacggcgt agcctataat gctaaacttt atggggtgca aatttttggc
     1561 aataataagg gtagtggaag ctttaatgcc cctaatgttt atgattattt taaagataaa
     1621 gatgtcaaaa tcatcaataa tagctggaat tcaaccacct atcctgttgt aagtatgact
     1681 caaacagggc tttatcttga tgcctataaa aataagtctt ctaacgagct ttttgagcaa
     1741 attcagcaaa actctacagc caagcaactc aatcaactca caaaagaaaa taaaactctc
     1801 gttgtctttg cggcgggtaa tgagggtatt ataagtccgg gcattatggc tttaagccct
     1861 ctttataatg aggaattgcg ttctttttta gcagtgggtt ctgtggattc ttcgcaaatt
     1921 acaaaaaatc aagatggcaa actagtggtt aatggtagag gtttgtctgg ttttagtaat
     1981 ggacttttag gagcggaaaa ttttagcttg gtagcaccgg gttctaatat taaaaatgtt
     2041 aatgctgctt atatgcaaaa atctagtttt gggcgtgtag ataaagattt ataccgcaca
     2101 caaagtggga cttcaatggc agcgcctatg gttagtgggg cggcggcttt ggtggcacaa
     2161 cgctttcctt ttttaaatgg caaacaaatc gccgatgtgc ttttaagtac ggcaaataag
     2221 gactatatag ctcctaaact cacggtaaaa gagacgaaat tgaaagttgt agaatatctt
     2281 ggtaaaagac ctatacttat ggaaaaaacc tttcatacta ttttttacat tgatacagat
     2341 atccctaaaa aagcagacgg cagtgtggat aaagagcaag ttaaacgaga cctttctcaa
     2401 gcgggttatt ctagatttta tactcccatc acagaatatc acggagtgga cgaaagcaaa
     2461 tatgcctcta tccaaaaagt cagcaaagaa agtctttttg ggcagggaat tttagatgta
     2521 actaaggcta tgaaaggctt ggcgactttg gacgcaaatc gccttaataa tagtgatgtt
     2581 tcaaacactt acgctgggca aaatgaggcg tattacacaa tcgatacaca aggatatgag
     2641 gcaattttta gcaataacat tagccagaaa aagtgggacg gaagcttaca taaaaaagac
     2701 gcaatcaatt tgccaacaaa tttagcaaat cttaatgtag gatttatcaa agaaggtagc
     2761 ggtaagctca tcttaacggg gaataatagc tatgaggggg tgaccattat taaaaaaggt
     2821 agcttagctt taaataataa aagtgaaaat gaaaaagcta gaatagcagg taatgtgaaa
     2881 gttttagagg gaggcttatt tagcggtaat ggcgaagtgg gtaaaaacct cgaaaataaa
     2941 ggcattgtaa gaccgggaaa tgaagatttg agtgatttga tcattgaggg taaatacaca
     3001 caagaggggc aaaattctaa attgcaactt gattttggca gccataaaaa ttccaagctt
     3061 atcgcaaatt cttatgagat taaaggcgga aaattagaat atatcccttt gccgaatttt
     3121 tttacaagtg ggcattatgt tagcattgat ttgggagatt taggaacgtg tttaagtagt
     3181 tttggagcgg ttgaggtagt aagcaataat gctgtggatt ttgtagctgt tttagatagt
     3241 gataaaacaa gcattaataa agataaaatg ccccaaccgg ctccacaacc ccagccaact
     3301 ccgcaaccag acattacaaa ccctcagcct ccagtaaccc agccaagccc aattacacca
     3361 ccgccaacaa ctactccacc aacgaccacg ccaccaccta atcatatcat cgttaagcca
     3421 gttattaaaa aagacgcata tgagagtgcg aatagcacta tggggcgatc cttaagaagc
     3481 attcgctcta tgcataattt acaagataga tataaggact attttgcctt tttggataat
     3541 acagatacga aaactatgga gaaaacttta gaaagtttgg aggctaatag ctatatgcaa
     3601 agtgcttccg gactttatta tcagcagcac attttggcac aaagaaatat aatgaacgct
     3661 cttaatccaa gctttacttc cgggaattta atggcaagtt tagaaaaaga tcctttatta
     3721 acagctagta ttgagagtga tgtttttatg gatttgggct tattagataa aatggataag
     3781 cgttatattt ggaatcttag ccctaattat aaaaaaatta acggcgataa ttttgacgga
     3841 cgaagcacgg gcttaaatct taccataggc ggagagctta atgaaaattc cctattaagt
     3901 tttgggttag atgtgagtga tactaggctt gattttgaaa atgcaaattt gaaaaataaa
     3961 tattttaatt tttcatttaa tcacatttta gatttgcaaa attttaaaat tctaagcagt
     4021 gcgagtttag caagagcaag taatgatatg acaagaacaa ttataggaca aaatggctct
     4081 ttaagctcaa attatgacaa tctacttagc tccttacaat taggactagc taaggacttt
     4141 caagttttta ataatttgac tttgacgcct ttggcgtatt ttaattataa ttttatcaag
     4201 caagatgctt ttagtgaaaa tggcaatctt gtctttgcta aatcttacga tgcgatcaat
     4261 catcatacca cttctttagc tggtggattg aatttatcct atctttttga ccgagaagcg
     4321 atgcaaacaa aacttggaag tttttttatt tatgaatata aattaagtgg gaaaacgatt
     4381 gaaaataatg tgcgtttcaa agattttcct aatcaagatt tcgtgcaata tcatcgtctt
     4441 aactctaatc ttatcacttg ggggctaact tcgtatttta tttatcctaa ttcgtttttt
     4501 tatggattta atgtagttaa tgaatttgct agcgatcaat ataatattaa tgttttgggt
     4561 caatttggtt tttattttta agtcttttga tgtcaaaatt gatgtgtagt ttatgtaagg
     4621 attatcaatg agtattttta agcttaagga aaatgggaca aatataaaaa cagaagtttt
     4681 agcaggcatt acgacctttt tgacgatgat ttatattgtc cctgttaatt ctcacattgt
     4741 gagtaacaca ggtatgcctt tggaggcttt gattacagct actgctttaa tcactatcat
     4801 tgcaagcgca cttaacggac tttttgcaaa cacccctgtg gcgatgagtg tgggtatggg
     4861 aatgaacgct tatttcactt tttcagtctg tatagcacag caaattcctt ggcagagtgc
     4921 tttgggggcg gtgtttttat caggcttgat ttttttaatt ctttctttta caaattttcg
     4981 tctttggatc atacgcaata tccctaaaga tttacgcctt gctatttgcg ctggtatagg
     5041 atgctttata gcatttttag gcttaagtca aatgggtgtg ataatgcata ataaagatac
     5101 tttagtcagc ataggaaatt tcaaaagccc tcatgtgctt tttggaattt tcactctagc
     5161 tttaatcatc tttttttggg ctataaaact tcgcggagct tttattttgg gggtattagt
     5221 aagctctatt attgtttgga ttttccattt agacaatgca agttttcctg tgcaaatctt
     5281 ttcttggcca aattttagca tggaaaatgg tttaagagcc atctttttac aacttgatat
     5341 caaaagcgcc ttaaatatta ctatgatacc tataattctt acttttttta tcactcaact
     5401 ttttgatagc ataggaacta tcacaggtgt gggtgaaaga ggaaagattt ttgatgatcc
     5461 caaaaatgga gaaaaaaaac taagcaaaac cttaatggca gatgcaacag gatcagcctt
     5521 aggagctatg acaggcactt ctacagttac agcctttgtt gaaagcacta caggggttga
     5581 aagtggagga agaacggggc ttacagcttt agttgtagct atttgttttg cttttacact
     5641 ttttttactg ccacttttta aagccattcc tgcaaacgca atataccccg tacttgtaat
     5701 ggttggaatt ttaatgttta tggaagttaa aaatatagat tttaaagata gtgctatagc
     5761 cgtagcaagc ttttttacta ttatcatgat gccttttact tactccatca ccacaggttt
     5821 tgcttttggt tttctttctt atttacttgt aagaattttt aaacgcgaat gggataaaat
     5881 caaccttggt attatagttt taagtttatt atctttgggt aattttttac ttatggcact
     5941 acaataaata aggatatata atgatatttt actcctatga agaatttaaa gaagatgtaa
     6001 aaattcttgc taaagaaatt aaaaaagatt ttaaccccga tgcactttta gctatagcaa
     6061 gaggagggat gagtttagga cactctttag cagtggcttt aaaaacgcgt cagctttttg
     6121 ctttaaactc aattcattac gatgatacaa aaaaacttga tactattgaa atttttaaca
     6181 ttcctgattt aagcaagtac aaaaaaattc tactcattga tgatatagta gatagtggag
     6241 aaagtttagc agaaataaaa aaagttgtgc ttgaaaaatt tcctcatatc gaacttaaaa
     6301 ttgcgaccat tttttataaa aaaactgctc ttttagaacc tgattttaaa gtaaaagaag
     6361 ctactgaatg ggtagatttt tactgggata taaatcttga ttaaaaattt gctataattt
     6421 tacttttaaa atttttagga gtttttgctt gaaaataaaa tttatatctt ttattttaat
     6481 tttttttgct atttttgctt ttgctaaaga acaaaattca gatgattttg aacaagaata
     6541 ccaaaactat caagtaaacg atccactttc aggatataac aaagctatga caagctttaa
     6601 tgtggctttg tatgattatg gtttgcgtcc cgttcttaag ggctataacg ctatcactcc
     6661 tgaatttata agattagggg taagaaattt ctttgataat ttacttgctc ctttgcgttt
     6721 tgtaggcaat gttttgcagt ttaaatttga agaagcggga gaagaattta aaagatttac
     6781 cgccaatacc attatgggct ttggtggact tatggatgtg gcatcaaaaa tgagtcttaa
     6841 aaaacatccc gcggacttag gaaccgtttt agctcactgg ggtgtaggaa gcggttttca
     6901 tattgtctta cctatactcg gccctagtaa tcttagagat actcttgctt tacctgcaac
     6961 ttggtatgca agttttaccg cttacattga tcctacttgg gcaagtatag ctataagtgc
     7021 ttatggattt ggtaatgaac ttagttttag acttgatgaa attgatgaaa tttatcacaa
     7081 cacgcctaat ttatatccat tcttgcgtga tgcttacgag caaagacgca atgaacttag
     7141 caaataaagg aaaataatga aaaaaatatt tttaatcttg gctttatttt ttaatgcttt
     7201 tgccttgcag ctagatgaaa tttctagtac tatgcaaaaa aacattgatg caagcttaaa
     7261 acttttacaa gatagcaaag aagacaaaaa acaagctgct gatggaattt ttaaactttt
     7321 tgatagcata atagattata aactcatggc aaaactcagt ctttcgaaaa attattctaa
     7381 attaaatcca aaagaacaag aaaaatttac cacagccttt gaagcaagtc ttaaaaaaag
     7441 ttttaccgat aaactcagtc tttataaaga tcaagtttta aaggtcaaaa atggtgagtt
     7501 aaaaaatgaa aaacgctatt ttttaactac ttctatggta gtagatgggg aagaaaaaaa
     7561 tatcattttt aaattttaca atgataataa taactggctt atttatgatg tagatgtttt
     7621 aggtgtgagt atagtacaaa cttatagatc acaatttaga gatattttag ccaaccaagg
     7681 ctttgatgcc ctacttcaaa aacttgagag tattgtcata gaataatgtt tgcaaagctt
     7741 ttaaagtttt ttatttctcg tccaaaaagt actttttttg gaaccttgtt tatatgcctg
     7801 tttttaagct tttttgcttt taagcttagc gtagatgcaa gtgctgaaag tttactttta
     7861 gaagatgata cagatttaaa aacttttaga gaaatttcaa aacattataa aagtgataat
     7921 tttttacttt tagccttcaa accctatgat gaaaaacctt tttcaaatga aaatttagcc
     7981 aaattaaaaa aacttcatga agaattagaa aaggcccctt tagtagagcg cgtttttagc
     8041 atcatcaatg cccctttgct tcaaagttca caaaatacgg atttaaaaga actgttaaaa
     8101 aatatcccaa acatagaaag ccaagatata aaccgcacaa aagcccgaaa cgaaatttta
     8161 aatagtccct tttataaaaa taatatcatc tcaaaagatg gaaaagtaac agggcttatt
     8221 atttacttaa agcctgatac agtttataat gatcttgtag aaaaacgcga tcttgctacc
     8281 gatgaaaaag aaaaagatca aattcgtctt gctataaaaa aacatcaaga caagcaaaaa
     8341 gttatcacga aacaaagtct agatactatt aaaagcatag ttcgaaatta tgaaaaaaat
     8401 aaagatacgc tctaccttgg tggcgtaagc atgatcgctg atgatatgat agcttatata
     8461 aaatctgatc ttgtacttta tggtgtttct cttgtatttt tactaggact tgcactttat
     8521 tattttttcc gttcatggcg ctttgttttt ttacctcttt ttatttgttt tataagctta
     8581 agtgcagcta gtggagtttt tgcactttta aattttcaaa tcacggttat ttcatcaaat
     8641 tacgttgctt tggttttaat tatcacctta agtgtagttg ttcatttaat cacgcatttt
     8701 atcgaaagca ctcaaaatca tcccaaagct aaagttgagc gcatagtgct tgaaacctta
     8761 ctagccaaag caaatcctag cctttatgcc attgttacaa cgatgatagg atttttttct
     8821 ttaatctttt caaatatcga acctatcata aaacttggta ttatgatgag tatgggtata
     8881 ggtttagctc ttatctttag ttatttattt ttagcaagta tcttggttct tttaaaacca
     8941 aaaaattatc ataaaaaaga gtttaaattt aatcttttag ccttttgcgc taaaaccgct
     9001 cttgatccta aaaaacgtcg catgatttat ggaatttcag ttcttgctat aatcttagct
     9061 ttaataggta tttcaaaact cagggttgaa aattcttttg tcaattattt caaagatggt
     9121 agtgaaatca aaaaaggact tttggttatt gataaaaatc taggtggaac cttgccttta
     9181 gaagtgatca ttcgttttcc aaataataaa aacgatcaaa atacaagcga tactcttgat
     9241 agttttgaaa gtgaatttga aaatttagcc acacaagaaa cttattggtt tgactctaaa
     9301 aaaacacgta ttgcaaaaaa agttcatgaa tttttagaaa acaaagaatt tgtaggctcg
     9361 attttaagtc ttaatagtct tttaacccta gggaaaaata tcaacgatgg aaaagagtta
     9421 gatgattttg ctcttgcgtt tttaaatgag aatttacctg ctaaatttaa acaagacttg
     9481 ctttcacctt ttgtaagtat agagaataac gagttaagat ttagtatgcg tattgttgat
     9541 tctgatccga atttaagacg taatgaattt ttaatagatc ttaaaaaaca gctcaacgag
     9601 cttgtaaaaa atgatggagt agaagttcaa atcacaggta taatggtact ttataataat
     9661 atgctccaaa gtcttttttc atcgcaattt gatactctta tatttgtaat tttagctatt
     9721 tttatacttt ttatcattgt ttttagagat ttaaaatttt cagttgcggc tatattggta
     9781 aatgttattc ctttaagtgt ggtttttgct cttatggggc ttttaggtat tcctttggat
     9841 atgatgagta ttactatagc tgctattgct ataggtatag gcgttgatga tgctatacat
     9901 tatatttatc gttttaggga agaaattaaa aacaaaagcc tagaagaagc cattatgatt
     9961 tctcacctta gtataggttc ggcactttat tatactacca ttagcatagt tttaggtttt
    10021 agtgttatga tgagtagtaa tttcattcca acaatttatt ttggaatttt aaccgttttt
    10081 gtaatgattt tgcttttaag tggaagtttg ttcttattac caagcttttt aatcactatt
    10141 tattctaaga aaaccaagtt tccaaaccaa cataaagagc atatattaaa acaataatag
    10201 ctatatattt taaaaaattt ttcattttta tcctttattt aaaatcttta aaatgatttt
    10261 tgcaagctct aaagctttaa aacgatgaga gatattattc ttctcatcca cgctaagctg
    10321 ggctaaggtt ttatcaaaac cctttggaat aaaaaggcta tcataaccaa aaccattttc
    10381 acctttttct gtatctatta cttttccatg catggttcca tgcgtactaa attcccccat
    10441 caaacctacc atagcaatag cagcaacata atatgcctta ctttgtttaa aacctttttt
    10501 tatcatttca ttgacaagtt tatcacggtt acttttatca tcgcccttac cgctaaatcg
    10561 agcagaataa attcctggat ttccttctaa aacatctaca caaatgccac tatcatcact
    10621 taaagcgata aaatcttttt tttgcttttc atccaaagca ttaaaaaccg ctcttgcttt
    10681 aatcaaggcg ttttctttaa aagtttttcc attttcttca atctcaaaag gcattaaaac
    10741 ttcatcaaaa gcataaattt caaaatcttt taaaatttct ttaagttcta aaactttatg
    10801 tttattgctc gtagctagga taatcttcat aacaaaagct ccaaaataat atcaaaaaca
    10861 aaaatatgat tttataaaat ttatccttgt gcgtagcttt taaatacaaa atggtaaaac
    10921 gatgttaatc aatgcttaat ccatttcata gtaaaattat cctaatttaa atttcaaatt
    10981 taataggaaa ttgataatgc taaataatgt cttaccctta tctttcatag ttggaacaag
    11041 attttttggg ctttttatag ttttgccagt tttaagcctt tatgctttaa aacttgaagg
    11101 tgctaatgaa tttttagtgg gacttttagt tggtgtttac gccttaaccc aaatgatttt
    11161 acaaatgcct tttgggattt taagtgataa aattggtcgt aaaaaaacca tgctcattgg
    11221 actgattatt tttataatag gctctttaat ctgctctttt gcagaaaata tttacaccat
    11281 gcttttaggg agaatgctcc aaggtgcagg agctattgga gcagtagcta cggcaatgat
    11341 aagtgatttt atcacagaag aaaatcgtgg taaagccatg gcggtaatgg gttcttttat
    11401 aggacttagt tttgcagctt ctatggtaat ttctccttta atgagtgcaa aatggggttt
    11461 atctagcctt tttgatctta gtgcggcttt gtctctttta tgtataattt tactttatac
    11521 cgttgtacct aaagaaaata aaatcactca tgaaaatgaa aaaactcctt tttttcatct
    11581 tattaaacaa aaaaatttag cccttatgaa tcttactaat ttcatgcaaa aaatgcttat
    11641 gagtatagca tttttaagta ttcctatcat cctagtaaaa catttaggct ttgcttctga
    11701 taaactttgg attgtttata gcgcttctat ggtagcaggt tttatcgcta tgggctttgc
    11761 tggaagttta ggcgaaaaaa gaggtttagc taaacaaatt ttactcttag gaattgtttt
    11821 tttcatactt tcttatcttt tctttgcttt tagtaattct atggattttt ttattacagc
    11881 agttgtgatt ttttttatag gttttaattt acacgaacct attatgcaaa gttgtgcatc
    11941 aaaattttgt aaagttcatg aaaaaggcgc agcattagga ttgtttaatg cttttggata
    12001 tggcggaagt tttacaggtg gtattatcgg ggggatattt ttgcatctag atgccttaaa
    12061 tcttttagct attattttag taattttagc tctaatttgg cttgtggcat tatttttctt
    12121 aaaaaatcca gctgatttta aaaaccttta tctaccttta gaaacgcctt taaatttcag
    12181 tacttttggt gaaaatttag gggttgtaga tatttataaa aactctaaaa atcttgttgt
    12241 taaatttgat agcaaactta caaataaaga agaattagaa ggcaaaatta agatctaaat
    12301 ctaattttgc cccgcaaaac ccattgcttt tatcatcact tttgccttgc aatctgcaca
    12361 gcaataaagt gttttgattt tattctcatc attaccaaat ttaggtttca ttaaattggc
    12421 tattttttct acggcttttt tggtcgcaaa ttctttacca cattctatac aggcaaaaag
    12481 ctcatctttt gccatggttt gatattcaaa ataagaagct ctaaactcca ttccactacg
    12541 aaataatttt aaagtatctt tttcagcaca acttaactca caatacccac aagtcgtaca
    12601 aagagaagca ttaaatttca aagcattttc ttgtttatca gcgattaaag ctcctacatt
    12661 acaggcaccc acacaagaaa gacaaagcgt acaggtgtta ggattgattt ctaccttacc
    12721 ataacgcaac cattcgccac tttccatact gccaaaatct tcatttttta tcatttcctg
    12781 cattcttttg gcaaaatttt ctcttgtagt taaggtgtta ttatgaaaat catattttaa
    12841 atcttgtatg aattcttgct cttttaaaac attttgcaat tctttttcat ctttagcaac
    12901 aaaaatagct tttttttgaa attttctctc aaaaaaagta tttaaaagta caatagcctc
    12961 gttgctacca cgagatacaa aatccgtata aaaaaccaaa tttgctccac tattttgcaa
    13021 aagcgttaaa aaatgcatag aagaaagcca tttttcaccc tctatcataa agggtaaaac
    13081 atcttttggt aaagcaagat ttaaattttc taaagacatt tttttaggaa tgattaaaat
    13141 ttttttatct ttataaaact cacaaagggt aaagaaactt tctcttggca taggagcata
    13201 atcaagcgat ccgctaggac acacgctaat acatcctcca caacccaaac aatccacttg
    13261 agaaaattcc aaatgtttgt tttcatcatc ttttaaaatc gccacagtag gacaaatttc
    13321 agcacatttt gcacaatgct cactgcgtct ttcgtggtat tgacacacac tagcattata
    13381 gctaatataa gttttataat gatattttgg acttttgctt tgcaaaaact caagcaatac
    13441 ttcaagattt tcaaaattta aaagattata acatccactt tgtcttgtaa aatctttacg
    13501 cacaacgctt aaatcctcag ctttaaaaag taaaaaatca aaatctattt ccacttcttc
    13561 gccttgattt ttaaccacag cacaaagctc ccctacactt ccaaaaacag ctaaaatttc
    13621 tgcactgctt aaagcaataa ccttaaattc atgttctttt aaaaactcta cagtttgagc
    13681 gtcaccatct gcgacaatca aacgattttg cacttctttg ctttgttcta aatcaagccc
    13741 caaatcataa acgctagctc ttgcttcata aagcgttaaa acatttttac tttgctctaa
    13801 aatttcatct tgagaatttt taagataaaa attaatctca ggggcataaa tttgtgcttt
    13861 ttgattttta tcattgcaaa ttaatgcttc tttatcattt gcctgatcta aaatttcaat
    13921 agcatcaggc aaagggatta aaacatcatt ttttatataa acaaaatctt gcattgtctt
    13981 ccttaatctc tttaaaacat cattttataa attctatgtt aaaataacca aatattttct
    14041 taaggcttaa gatgaacaaa tttagaactt ttccacaaat taacactctt attgaagatg
    14101 agagtttaaa atcctatcct ttttatatca aagcattttt ttgtaaaaaa gttgtcgcaa
    14161 aactaaaaga aaattttttc caagatgaaa tttctaaaga taaactactt ttagaaatca
    14221 aaaaagaaat caaaactttt taccgcaaag atttacaaag tgtgattaat gcaagcggag
    14281 tggttataca cacaaacctt ggtagaagtg taatccatga agaactttat gaagcgtgta
    14341 aagatatcat ttgtaattat tctaatgtag agtttgattt agaaaatgga aaaagaggct
    14401 ctcgctatgc tttggtacta gaaaaactta aaatgctttt tgaatgtgaa gatgctttag
    14461 tggtcaataa caacgctgcg gcagtttttt tagtgcttaa ttctctttgt tatgataaag
    14521 aagtcataag ctcaagagga gaacttgtag aaattggcgg aagttttcgt gtgcctgaag
    14581 tgataaaagc tgcaggtgta aagctttgcg aagttggaac tagtaataaa acacacttaa
    14641 aagactatga acaagctatc aatgaaaata ccgctctaat tttaaaaacc cacaagtcta
    14701 atttcgctct tatgggtttt cacagtgaag taaatataaa agatctacat gaactagcaa
    14761 aagaaaaaga gcttttgagt tattatgatc taggttctgg ctggtgtgaa aatttaaatg
    14821 aaaagctgat taagaatgaa cctaaaatca gaaaactcgt gcaagaatgt gatattttaa
    14881 gttttagcgg agataaactt tttggcagcg tacaagcggg cattatactt ggaaaaaaag
    14941 aactcataga aaaacttaaa caaaatcaac ttttaagaat gctaagagtg gataaattaa
    15001 ccctatcttt tttaaacgaa agcttaaaag cttatttaca aaaagattat gaaaaaatta
    15061 ttaccttaaa acttttaaat gatgacttat cctttataga gaaaaaagct ttaagagtgc
    15121 aaaaagaatt aaaatttcaa acccagctta aaaaaagcaa aagtttagta ggaggaggtt
    15181 ctatgcctga taaaagttta gatacttata tactaacttt tcaaggagat gctttaaaac
    15241 tacaaactcg atttagaaaa gaaaatatca taggacgcat tgaaaatgat gaatttgttc
    15301 ttgattttag aactatacga gaaaatgaac ttcaaaaact tattcttaca atcaatcaaa
    15361 tggaaaactt atgaaatctg ttattatagg aaccgcagga catattgatc atggaaaaac
    15421 ttcactcatt aaagctttaa atggttttga aggcgatagt ttaaaagaag aacaagaaag
    15481 acaaatcacc attaatttaa gtttttcaaa tcttaaatta aaagataaaa acatttcttt
    15541 tatcgatgtt ccaggacata aagatttggt taaaactatg gtaagtggag cttttggctt
    15601 tagtgtttgt ttatttgtcg tagatattaa cgaaggttta aaagaacaaa gtttagaaca
    15661 tttagaaatt ttaaaaattc ttgatattaa aaatatcatt ttagtgctta gcaaatgtga
    15721 tctttgtgaa aatatagagc aaaaaagtgt agaaatttta gaagagttaa aaaatttaga
    15781 ttatcccatt ttaaaagtat ttcacaccag tataaaaaat aatcaaggca tagaagaatt
    15841 aaaaaattat ctttatacca tagaaaacaa agaaaacgat gaagaactga tttttcatta
    15901 ttatatcgat agagtttttt ctctaaaagg cataggaact gtcgttacag gcagtcttaa
    15961 tgaaggaagc atcactttaa atgaaaaaat catctgttta gacactcaaa aagaactcat
    16021 tgttaaaaat atacaaaacc acgatactaa tttagagcaa atcaaagctt gtaaccgtgt
    16081 ggctttaagt ttaaattgtg attataaaga gttgaaaaaa ggttatttgc taagtaaaaa
    16141 aggttgtttt aaagccttta aagaatgcga tgctttagtt aaagcaaaaa atttacaaaa
    16201 tagcaaaatg attttttgtg taggttcaag acaaatagaa tgcaaaataa atatattaaa
    16261 aaaactagaa aatgatgaat tttttgtgca ttttagtttt gataaaaatg tatttttaag
    16321 ttttgatgag gcttttattt tattacaaaa taatcgtgtt ataggcggtg gtaaggtttt
    16381 aaatccttta agcgaacctt taaaaaaaga acaaaaaaat aaatttttaa tgtttttgaa
    16441 aaataaagat tttaaagcag ctttttcttt cttaaaagac gcacataaat acggctttgg
    16501 tttgctttca agctatcaga gatttaaact ctctcatcaa aaagcattga aattagcgaa
    16561 agaattaaat caagtatttg tcgatgaaaa aaatcttaat gtatatcatt tacaaagtct
    16621 agaagaaatt aaaaatttca tcaaattcat acttgaaaaa aatccttatg ccatgctttc
    16681 agcacattct ttagctttaa ggattacttg ggcaagtgaa aatttttgcg aactcggact
    16741 taaagaaatg tcaaatttat tggattttca aaatggaatt tattttaaaa aaggcataga
    16801 ttttgaaaaa cttcaagaaa aaaataataa ccaaatgtat gaaattttaa aaaaacaagg
    16861 tattaaaccc gaagctcctt ataatcttta tgatttttta gaacttgata gaaaaagcgg
    16921 agataatata ctcaaaaaac ttacccaaaa aggcttggtt gtaagacttt cacacaatct
    16981 ttttatagaa aaacaagctc ttgaaaaact tatgcaagaa tgtttaaatt tattaaaaaa
    17041 tcaaagtctt gatgtgcaaa gtatgaaaga atatttcaat ctttcaagaa aatatgctat
    17101 tgcttattta gaatacttag acaaatttcc tcaagtaagc aaagaagctg aaaaaagatt
    17161 tttaacaaat atttagaaaa tcattataga attaaacata atttatttaa aggatttata
    17221 aactatgaaa aaattaagtt taattcttgc ctgttcagca tctttgtttg ctgcaagtaa
    17281 ttcagaaatt agtgattttt attcaaaaag cattaaagca caatttccaa atgctaccgt
    17341 tagtgtatca aatcgtcaaa aggttggtaa tacgggtttt gaaagtgtta ttgtaagcgt
    17401 tgaattaaat ggacaaaaac aagaaaacat tctttttaca aaagatagtc ttattacccc
    17461 tgatcttatc gacttgaaaa cgggaatttc ttatgctcaa gaatatgaaa tgaaaaaatt
    17521 tcaagaagca agagaaaatt ttacaaaaaa tgctaaagct gtagcacaaa aagaaaccat
    17581 ggtaatagct ttgggagata aaaataaacc tgcaatttat gttttttcgg atcctgaatg
    17641 cccttattgt agagaacatt tagctcaaat tgatgatgaa cttaaaaact atcaagttaa
    17701 ttatatttta actccagtac atggaaaatc tgcttttgaa aaatccgctc taatctacaa
    17761 agaagcaaaa aaagcaaaaa atgataaaga aaaaatcgca attttaaaca aatactatga
    17821 tgcaaatatc aaaaattatc caaaagtaag tgatgcagaa ttaaaagaag ttttttcctt
    17881 atatgaaaaa tatcgctcat taggtcttag cgctactcca actattatta aataaaccta
    17941 atgtctaaat ttgctttaat tttaagcttt tttatagcac tctttatgag tgcttgcacc
    18001 aatgcaactt tcatacaaag ctttattcaa acaagcaatg aaggcatttt tatcagatcg
    18061 caaaaacaac aaagttttaa aatttccttt caaaatccta gtcaacttcg aactactttg
    18121 gatagagatt tggctttaaa acttaaaaat ttaggcttaa aagaagtaaa agagaatgca
    18181 gattatgaaa ttttaatcaa tcttgtagat atgaaaaagc attcttatgc tcaaaaaatc
    18241 acaacttcag caagattttt ttatgatttt gatcctttgg aaagtgatgg agaatggatg
    18301 gtagaaaact actatactat gcaagttaat ttacaaatca actctaaaaa tcacaattct
    18361 caaaaaacaa gtcttcttgc aagaacagct tatcttggaa ataaagaacg ctgtcaatta
    18421 tctttagaaa ataaaattat aaatcaaata gtgagttttt ttatttttaa gaaaagacaa
    18481 tcaagagtat aaaaactctt gattttaaga attattaagc aaaataaggt ttgatttgtt
    18541 ctacccaagc atcaattctt gattcagttt gatcttcttg attatcattg tcaagagcaa
    18601 gtccaacaaa tttaccatct acaaccgcat cgcttgcttc aaatgtataa ccatcagttg
    18661 aaacttctcc taccaaattt gcacctgcat cttttaaatt ttgagctaat ttacccatgc
    18721 cgccacaaaa agtgtcagaa taactttcac tatcacccat accaaataca gctacagttt
    18781 ttccaccaag actaagccct gaaaaatcaa aaccatccca atcatcttgt aaatcaccac
    18841 ttccccaagt tgaagttcca caaattaatt tatcgtaaga attcatttta gctgcatcaa
    18901 tatctgagat attaaaaaca tcactaattc caagttttga agcaattgta ttagccgctc
    18961 cttctgtatt tcccatagca ctaccataga ttactgctac tgacattatt ttctccttat
    19021 aatttgattt gatattttat acggaactaa ttttaacata gttttgttta aatcacacaa
    19081 aaaatgtttt atttcaataa aatgtgtgaa at
//
LOCUS       DAZBIH010000020        18900 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.020, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000020 DAZBIH010000000
VERSION     DAZBIH010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18900
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.020"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..628)
                     /locus_tag="ACHFOB_000591"
     CDS             complement(<1..628)
                     /locus_tag="ACHFOB_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 25 protein"
                     /protein_id="HFN5799407.1"
                     /translation="MKVFIINLERSLDRKEHIQKQIQKLFEKNLSLKNKLEFIFFKAI
                     DAKNKEHLEFKDHFPWWGSWVLGRELSDGEKACFASHYKLWQECVKLDEPIIILEDDV
                     EFSDEFLNNGAEYIDELLKSKYEYIRLCYLTQGKMLKLNDNFLFTLDSIGGTQGYLIK
                     PISALKFIDNLKFWIKPVDNVMDMYYYSKVFTITYTPLLLKTTDINSTI"
     gene            complement(628..1188)
                     /gene="gmhA"
                     /locus_tag="ACHFOB_000592"
     CDS             complement(628..1188)
                     /gene="gmhA"
                     /locus_tag="ACHFOB_000592"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008968 - D-sedoheptulose 7-phosphate
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HFN5799408.1"
                     /translation="MISLVEKEWQEHQKIAQASEILKGQIAKVGELLCECLKKGGKIL
                     ICGNGGSAADAQHFAAELSGRYKKERKALAGIALTTDTSALSAIGNDYGFEFVFSRQV
                     EALGNENDVLIGISTSGKSPNVLEAFKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVP
                     SDDTARIQEMHILIIHTLCQIIDEGF"
     gene            complement(1185..2570)
                     /gene="rfaE1"
                     /locus_tag="ACHFOB_000593"
     CDS             complement(1185..2570)
                     /gene="rfaE1"
                     /locus_tag="ACHFOB_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA];
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-beta-D-manno-heptose-7-phosphate
                     kinase"
                     /protein_id="HFN5799409.1"
                     /translation="MLEFLSQQKPKILIIGDFMVDNYTWCDCSRISPEAPVLVAKTLK
                     EDKRLGGAANVYANLKNLGADVFALGVVGDDESGKFLQENLKGEFLIQKGRKTPFKNR
                     IMAHNQQVLRLDEEDTSAILLENELIALFDEKIKDFKAVVLSDYAKGVLTPKVCKAVI
                     EKAKALNIPVLVDPKGSDFSKYSGATLLTPNKKEALEALKFENLEGKNLEKGIKKLKE
                     DFALRYSIITLSEAGIALFDENLKIAPAKALEVYDVTGAGDSVIAVLAFCLANEIEIF
                     KACELANEAAAVVVSKIGSVSVSFDEIKSFKHVDFEKKIKSKEELLALLKQNDKKIVF
                     TNGCFDIVHFGHIKYLEKAKRLGDVLVVGLNSDASVKSLKGESRPVNSEFQRACMLAA
                     FYFVDFVVVFDEDTPLELISFLKPDILVKGADYKDKIVVGADIVSKVELIDFEEGFST
                     SKIIEKIKDKK"
     gene            complement(2563..3516)
                     /gene="rfaD"
                     /locus_tag="ACHFOB_000594"
     CDS             complement(2563..3516)
                     /gene="rfaD"
                     /locus_tag="ACHFOB_000594"
                     /EC_number="5.1.3.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008712 - ADP-glyceromanno-heptose
                     6-epimerase activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009244 - lipopolysaccharide core region
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-glyceromanno-heptose 6-epimerase"
                     /protein_id="HFN5799410.1"
                     /translation="MKIAITGGAGFIGSQLALNLQEKHEILIIDKMRSSATFENGNLQ
                     SFGHFKNLLEFDGELFAGDINDEKVLKKIEDFKPEIIFHQAAISDTTVFDQTKVLQTN
                     LNTFKDFIELSIDLNAKLIYASSASVYGDAKSPQTVGKDEEPKNPYAFSKLMMDKLAK
                     KYYDKAHLVGLRYFNVYGKGEFYKNKTASMVLQFGHQILAGKNPRLFEGSDQIYRDFT
                     YIKDVINANLIALDSKCGVYNVGSGKARTFQDIVDILQKELKTDLPCEYIPNPYVKSY
                     QFHTEAKLDQTWDYQPKFSLEEGIKDYLGEIKRLFEKEVNA"
     gene            complement(3517..4077)
                     /gene="gmhB"
                     /locus_tag="ACHFOB_000595"
     CDS             complement(3517..4077)
                     /gene="gmhB"
                     /locus_tag="ACHFOB_000595"
                     /EC_number="3.1.3.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-alpha-D-manno-heptose-1,7-bisphosphate
                     7-phosphatase"
                     /protein_id="HFN5799411.1"
                     /translation="MFIFFLKKLYYNVFMKTKALFLDRDGVINIDKKYVYKIEDFEFC
                     DGIFELCRYFLARSYLLFIATNQSGIARGYYKESDFFKLCDYMLKEFAKQDIKIDKIY
                     HCPHLEGCECRKPKAGMLLKAKDEFDLDMKNSIFIGDNLSDMQAGLNANIGTLILVNE
                     EKKEGDFFRQFKNLKEILSFFKEKDI"
     gene            4159..4461
                     /locus_tag="ACHFOB_000596"
     CDS             4159..4461
                     /locus_tag="ACHFOB_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN5799412.1"
                     /translation="MKKLLVVSALACLGVSAFAADGATLFKKCAVCHGANADKVYLNK
                     VPALKTLSSAERLQYMKEYSEGKRNAYGQGAIMKLNLKGLTEEDFKAIEAHIETLK"
     gene            complement(4484..4690)
                     /gene="ccoS"
                     /locus_tag="ACHFOB_000597"
     CDS             complement(4484..4690)
                     /gene="ccoS"
                     /locus_tag="ACHFOB_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome oxidase assembly protein
                     CcoS"
                     /protein_id="HFN5799413.1"
                     /translation="MNSIIMMMIGVSILAFFIILATLLWGIKNKQFDDDYKFTTLNDD
                     EDSLRDAIELERRKKEALDKKRLS"
     gene            complement(4687..7044)
                     /locus_tag="ACHFOB_000598"
     CDS             complement(4687..7044)
                     /locus_tag="ACHFOB_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase
                     metal-binding domain-containing protein"
                     /protein_id="HFN5799414.1"
                     /translation="MIMKCEHCKLDYKQAQMIEYKGKFFCCKGCESVWEILHESGLDE
                     FYEKLGNQTLSPVNFQNEMKNYDEFITKTKEGFSEIYLMIHGIECAACVWLNEKILTK
                     QEGILELDINHLNHKARIVFDEQSISLVQILRLIESIGYKASAYDASKASKKADLLKR
                     EFYSKLVVAIACVMNIMWIAVAKYAGFFSGMDKDTKDILNFAEFILCSPVLFYTGSHF
                     YKSAFKTLKMHSLNMDVLVISGASLAYIYSLWAMFFRVGEVYFDSVAMIICFVFIGKY
                     LEMFSKKRALDTIDGLNDFLQNEVLVFDGKEFAPKEVQKVCLGDRILLKTGDKILIDG
                     ICKSGEMSVDTSSLNGENIPKLIQKEDEIFSACIVLDGSVEYEATKLYKDSKLSQIIQ
                     LLELASSKKAKLESLVNSLSAYFSRTVLLIAFICFAFWFFYKEESFEISLVNAIAVLI
                     IACPCALALATPVSNLVALGRALKKHILFKSSSVIEDLSKCDCVVFDKTGILTKIELE
                     LKEVFLDKALDLNELYNFVKLSKHPISQNIASYLKQKGAKDLNLDFKKHSSIQAKGLS
                     AELNEGLLLGGSSKFLQEKGIVAKEFDNTHFIFAKEGKILAFFEFDSVLREDAKELIT
                     YLKKEKKELMILSGDHQKAVEKIARKLEIQNYQASCLPEDKMKTIEKLSKNYKVLFVG
                     DGVNDALALKYASVSMTLREGSDLAIESSDVLLLKNDLLSLKKAIKLSKNTFKIIKQN
                     LAFSLFYNACTIPLAFLGMINPLFAAISMSFSSIIVVLNALRIKE"
     gene            7153..8451
                     /gene="rho"
                     /locus_tag="ACHFOB_000599"
     CDS             7153..8451
                     /gene="rho"
                     /locus_tag="ACHFOB_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008186 - ATP-dependent activity, acting
                     on RNA [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HFN5799415.1"
                     /translation="MEKEKKQHQRTHVPVEGYKIEELKLLDLENLVKIANECEIENPR
                     EFRRQELIFEILKAQTKKGGFILFTGILEISSEGYGFLRGMDSNLSDSVNDAYVSNSQ
                     IRKFALRVGDIVTGQVREPKDQEKYYALLKIEAINYLPLQEAKERPLFDNLTPIFPTE
                     KIKLEYDAMKLTGRVLDLFTPIGKGQRGLIVAPPRTGKTELMKELATAIAKNHPEMHL
                     IVLLVDERPEEVTDMQRCVKGEVFSSTFDLPAYNHVRVAELVIEKAKRMVETGKDVII
                     LLDSITRLARAYNTATPSSGKVLSGGVDANALHKPKRFFGAARNIENGGSLTIVATAL
                     IDTGSRMDDVIFEEFKGTGNSEIVLDRNIADRRIYPAINIIKSGTRKEELLQGVANLQ
                     KIWAIRSAISQMDDVEALKFLYSKMLKTKDNVELLSIMNE"
     gene            8455..9984
                     /locus_tag="ACHFOB_000600"
     CDS             8455..9984
                     /locus_tag="ACHFOB_000600"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009360 - DNA polymerase III complex
                     [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HFN5799416.1"
                     /translation="MLQALAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSG
                     LRGSGKTSSARIFSRALVCEQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLED
                     IQALIEQTKYTPSMARFKIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLK
                     LPATVLSRTQHFRFKQIPQSEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLT
                     LLDQAIIFCQNEISISKITDMLGFLDPQKIKAFYQAILTKDKEKVFAYLEELQDYEAS
                     NVIDEMLFYLKESFFAKSTEFSILIYERFFRILSKAKNMLCDDDGFTLCVMAFMMMEA
                     SHLKEIDAQIQEIKQENTTNITPRITPAPIIPNLEKKIEKNAYEILLDSIYDRDFDLA
                     ECFKQSTKFISFENNTLNISSNAQGQNRDTLNKGFKLIQELFKTKFGENAKINVQKAL
                     TIDENKLQSLTQELPNNENKNIDIQSSINMLKEGAKKFDPQEDLKEALKDCFGEPSIE
                     N"
     gene            complement(9981..10502)
                     /locus_tag="ACHFOB_000601"
     CDS             complement(9981..10502)
                     /locus_tag="ACHFOB_000601"
                     /inference="COORDINATES: protein motif:HMM:NF021453.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2165 family protein"
                     /protein_id="HFN5799417.1"
                     /translation="MQQKCFCISKMIRFSKIIILLTVASLAGIVVFGNVTDCNSNFQF
                     VSHVMSMDTKPDYLGNAIVYRAITSPVIHHIGYIAIILFETFITLTALKGAYDMFKAR
                     NLDAQSFHNAKIFGIVSLTCCCILWFFAFQVVAAEWFGMWMSKVWNGLPDATRLVTYM
                     FLALIFISLKNDD"
     gene            complement(10574..12673)
                     /gene="copA"
                     /locus_tag="ACHFOB_000602"
     CDS             complement(10574..12673)
                     /gene="copA"
                     /locus_tag="ACHFOB_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase CopA"
                     /protein_id="HFN5799418.1"
                     /translation="MEELRIKIGKMTCVNCSNAIERACRKIDGVKDASVSYVNSSGVF
                     LLENQEKRKDIIAKIQNLGFEILEDEQSLNAYKAKKHLELRKNLLLSIVLSVIIMYFE
                     MFVKSSFSQNIQMALSFFGIFYCGRDFFSHAFLGLKSKNLDMNTLVALGTLSAFVYSF
                     LVYLKIFKEEDLYFSGAMMIISFVLLGKYLESKAKFKAQDYQRILENIDTKKTKILLE
                     DESIKEISSSFVKSGDVLLVKEGESIVADGVVLLGSAELDMSFLNGEFLPVLKKEGDE
                     VQAGAVVLNGALRIKANKKAMDSTLEQIKNLVFEAGNIKSPLANLADQISKYFVGGII
                     FFAFLVFVFWVLKADLNTAFLHSCAVLLISCPCALGLATPIALVVASANAAKNFILIK
                     NPAALEKLALVKYAFFDKTGTLTKENLNIFKHNLSKDDFDKLCQIESLSSHPVAKALH
                     KDQIFDLKGEGRVIVGSGIKYKEDSDIYLAGSAKFLHENEIDTKESDVFFDTFKEYVR
                     VYFAKNKKCLGGVLLSNALKDGAKELVLNLKKQNLKTFILSGDHVKNVEKIAKELQID
                     EFYAQLKSEEKLQIIQKFKKTLFVGDGINDAAALSAASVSMSFSKANELAKKTGDFIL
                     IKDDLSAIFKCFKLAKKTRSIIKLNLFWAFIYNVLCIPIAAGFVPFITLSPHIAALAM
                     CFSSITVVFNSLRLKRI"
     gene            complement(12673..12867)
                     /locus_tag="ACHFOB_000603"
     CDS             complement(12673..12867)
                     /locus_tag="ACHFOB_000603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy-metal-associated domain-containing
                     protein"
                     /protein_id="HFN5799419.1"
                     /translation="MKFKVKNVNCMNCVNLIKNSLEDEFGNIEVDLDQKILSLNLEEN
                     QVTNFTKEFQDLGFEIVERL"
     gene            complement(12857..13807)
                     /gene="czcD"
                     /locus_tag="ACHFOB_000604"
     CDS             complement(12857..13807)
                     /gene="czcD"
                     /locus_tag="ACHFOB_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDF family cation-efflux transporter CzcD"
                     /protein_id="HFN5799420.1"
                     /translation="MYKFLSHEPLANKSCHHNHEEHSHEHHHSHADARSMDKKILKIS
                     LLMTFSMMLVQFIYSILSNSLALLSDTLHMFSDVFALALSFLAIIAVEKWQDHQKTFG
                     YFRLEVLVAFINALTIILSALFIIYEAIEKFINPKEIDAKTMIIVAILGFLVNGINAL
                     MMFKGANLENVNMKSAFLHMMSDLLGSLAVIIGGIVVYFSGIVYIDTILAIVLSILLL
                     KWAIILLKQSANVLLESSPVDIEKVRQVLLLNPSVDEVVDLHITQITNKMLVASMHLK
                     VRVCDLKEFEKLSQDLSHKLLHEFEIGHITIQPIRSENEI"
     gene            complement(13882..14145)
                     /locus_tag="ACHFOB_000605"
     CDS             complement(13882..14145)
                     /locus_tag="ACHFOB_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zf-TFIIB domain-containing protein"
                     /protein_id="HFN5799421.1"
                     /translation="MLCPVCNVDLVMSDRSGVEIDYCPKCRGVWLDRGELDKIIERSV
                     PNTANFNQAPRQESRYNDSAYHQHNDYYKKKKKESWLGELFDF"
     gene            complement(14215..14709)
                     /locus_tag="ACHFOB_000606"
     CDS             complement(14215..14709)
                     /locus_tag="ACHFOB_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HFN5799422.1"
                     /translation="MIEFILRDMFFAAVAGFGFAYACNPPLKTLILSALLAAIAHGLR
                     FTLVEYFHFQTLAIATFVASFCIGCLGIALAKIIKTPAEIIAFPALIPMIPGIYAYKA
                     ILYLISFIRSDDLKAKSEFLVQFFDYFFTTVSVTLALAIGVSVTLLIFFEQSFMMTRH
                     AKKH"
     gene            complement(14706..15482)
                     /locus_tag="ACHFOB_000607"
     CDS             complement(14706..15482)
                     /locus_tag="ACHFOB_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HFN5799423.1"
                     /translation="MEKPDIQRLTNFLIVYTKTLLGAGTYTARVAKCVGRIAEVYGYE
                     ININFFFHHITLNVVDMDDNSIQRTYVIPNHHAHVNFKLIFDLSALSWAMYDHKYDLE
                     KAKVVFEQISQQKKHSYLLNLLFVSMANSAFCRLFGGDFGAGNLVFFATFVGLLLRYI
                     LTKAKIDLRIQYILCSFISSWFVFFGLDMGYTNTSDVALGSSILYLIPGVFFINSVID
                     ILKDHILMGLSRIISVAILICCIALGIYMTLSISDFGILR"
     gene            15550..16476
                     /locus_tag="ACHFOB_000608"
     CDS             15550..16476
                     /locus_tag="ACHFOB_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HFN5799424.1"
                     /translation="MAKIGIVGLGYVGAASAYSIVTQGICSELYLYDIKQDLALAHAR
                     DLEDMSAIHFSYTKIFHVSNLENLASCDIIILAFRKESLKELPSRLVELQNNILELKD
                     IVLTLKNANFKGKYIVATNPNDTITYYTQVLSQLPKNHVFGSGTNLDSSRLKKFLAKD
                     LNINSKDIFACMIGEHGDSQFAALSNASVLGQNLLDFYKQKLGKDLDIQELEKAVISE
                     GYFIYERKGRTEFGIGTSCANLAKAILEDRKSLHPVSVVFDDIAFSMPAIIGKDGIEK
                     VFELKFNEKEKIKLENSKQQIKNAIQSVKDKI"
     gene            complement(16473..17075)
                     /locus_tag="ACHFOB_000609"
     CDS             complement(16473..17075)
                     /locus_tag="ACHFOB_000609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN5799425.1"
                     /translation="MQEIISFVVETASAWGYLGIIILMTLESCFIPFPSEVVMIPAGY
                     LAHKGELDITLCILSGTLGSVLGALINYYICFFWGKNFVLKWGKYFGINEAKFAKFEE
                     FFNKHGEFSTFTCRLLPGIRQYISMPAGLVKMKLVNFILFTALGSAIWVAILVFLGYY
                     IGQNEELIKTYLTQILIIIIVFVILASLIYIKIKKPFKKA"
     gene            complement(17155..17382)
                     /locus_tag="ACHFOB_000610"
     CDS             complement(17155..17382)
                     /locus_tag="ACHFOB_000610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799426.1"
                     /translation="MRKILFASLLPIIALADCASLMAKYEAPEPESKTMKQVERWINK
                     KVSDPADAAVLKECMIARAADNPNQVSVAGK"
     gene            complement(17393..18793)
                     /locus_tag="ACHFOB_000611"
     CDS             complement(17393..18793)
                     /locus_tag="ACHFOB_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3373 family protein"
                     /protein_id="HFN5799427.1"
                     /translation="MKTKFSLILSACLLSSSLFAKNADDEITKLQKQLAQIQAELAQI
                     RKEREAQAKQNEAVKAELADLNDRADETEFQAALSKVKFGLEFSTAVSNTNYKVSGQD
                     YSANNKWMNELHLNMNADINDKTKFYGRLSMAKNWSQMDWSGSPYDLDAGRNTRSSGP
                     VLYVDRAYLDYYITPEWIATIGRQPGTDGPGSNLRNNALRQSTYPALAINALGDAAVI
                     TYKPESLQDHKVAIRAAYGKTYQWDEEGKVRDWMSNQKDADANLYYAAVEGELPIEGM
                     GDNLIIFNVAHMTDFALPLPSIPSILNQGVYNLGDLTLANIHFENYNAFGTNFNYFVS
                     LGYSNGANAHTLSANPVAQSQLEFNEKDGYAVHVGGRYDFTKALKVGYEFFWGSRYWY
                     TMSRPSINDPLNIRMTRGTAHDFYVIYQLDRYQFLRLSYTNIQNIWGNRGIPFGGAKK
                     DKARADNIMLMYNVKF"
BASE COUNT         6763 a         3496 c         2459 g         6182 t
ORIGIN      
        1 caatagtgga attaatatct gttgtcttta gtaaaagagg agtgtaagtt atagtaaaaa
       61 ctttactata ataatacata tccataacat tatccactgg tttaatccaa aattttaaat
      121 tatcaataaa ttttaaagcc gaaataggtt ttataagata cccttgtgtt ccgccaatac
      181 tatccaaagt aaacaaaaaa ttatcattaa gcttcaacat tttaccttgt gttaaataac
      241 aaagtcttat atattcatac ttactcttta acaattcatc tatatattct gccccattat
      301 ttaaaaattc atcgctaaat tccacatcat cttctaggat gattataggc tcatcaagct
      361 tcacacattc ttgccaaagt ttataatgac tagcaaaaca agctttttct ccatcagaaa
      421 gctctctgcc cagcacccaa gaaccccacc aaggaaaatg atctttaaat tccaaatgtt
      481 ctttattttt agcatcaata gccttaaaga aaataaattc taatttattt tttaaactaa
      541 gatttttttc aaaaagcttt tgaatttgtt tttgtatatg ctcttttcta tctaaagaac
      601 gctctaagtt gatgataaaa actttcatta aaaaccctca tctatgatct gacaaagtgt
      661 gtgtatgatc aaaatgtgca tttcttgaat tctagccgta tcatcacttg gcacgacaag
      721 attgtgatcg caaagcttat tcatcattcc accacccttt ccactaagcc ctagacaaag
      781 catattaagt tcttttgctt ttttaaaagc ttctaaaaca ttagggcttt ttccactggt
      841 tgaaataccg attaaaacat cattttcatt tcctaaagct tccacttgtc ttgaaaaaac
      901 aaattcaaaa ccatagtcat ttcctatagc actaagtgct gaagtatcgg ttgtaagcgc
      961 tatacctgct aaagccttgc gttctttttt ataacgcccg ctaagttcag ccgcaaaatg
     1021 ctgagcatca gctgcgcttc caccatttcc gcaaatcaaa atcttgccgc cttttttaag
     1081 acattcgcac aaaagttcgc ctactttagc gatttgtcct tttaaaattt cactggcttg
     1141 agctattttt tgatgttctt gccattcttt ttctactaaa cttatcattt tttatccttt
     1201 attttttcta tgatcttgct tgtactaaat ccttcttcaa agtcgattaa ttcaaccttt
     1261 gaaacaatat ccgcacccac aacaatttta tctttataat cagctccttt aaccaaaata
     1321 tcaggcttta aaaagcttat aagttccaaa ggcgtatctt catcaaaaac tactacaaaa
     1381 tctacaaaat aaaaagctgc caacatacaa gctctttgaa actctgaatt tacaggacga
     1441 ctctcgcctt tgaggctttt cacactcgca tctgagttta agcccacaac caaaacatcg
     1501 cccaatcttt tagctttctc aagatatttt atatgtccaa aatgcactat atcaaaacaa
     1561 ccatttgtaa aaacgatctt tttatcattt tgttttaaaa gtgccaaaag ttcttctttg
     1621 cttttgattt ttttctcaaa atccacgtgc ttaaaacttt taatctcatc aaaactcaca
     1681 ctcacactac ctattttact taccacaaca gctgcggctt cattggcaag ttcgcaagct
     1741 ttaaaaattt caatttcatt tgccaaacaa aaagccaaaa cggcaatcac actatcgccc
     1801 gcccctgtta catcataaac ttctaaagct ttagcaggtg cgatttttaa attctcatca
     1861 aaaagtgcaa tccccgcttc tgaaagagtg atgatagaat aacgcaaagc aaaatcttct
     1921 tttaattttt taatcccttt ttctaaattt ttaccctcta aattttcaaa tttcaaagcc
     1981 tctaaagctt cttttttatt aggcgtgagt agggttgcac cactatattt actaaaatca
     2041 ctccccttag gatcaaccaa aacagggata tttaaagcct tagccttttc tatcacagcc
     2101 ttacaaactt taggggttaa aacaccttta gcataatcgc ttaaaaccac agccttaaag
     2161 tctttaatct tttcatcaaa caaagcaata agctcatttt cgagcaaaat tgcacttgta
     2221 tcttcttcat ctagtcttaa aacctgctga ttgtgcgcca taatgcgatt tttaaaaggg
     2281 gttttgcgtc ctttttggat caaaaattct ccttttaaat tttcttgtaa aaatttccca
     2341 ctctcatcat cacccacaac accaagcgca aaaacatcag cacctaaatt ttttaaattt
     2401 gcataaacat tagcagcccc acctaatctt ttatcttctt taagagtttt agctaccaaa
     2461 acaggggctt caggactgat acgcgaacaa tcacaccaag tgtaattatc caccataaaa
     2521 tcccctataa tcaaaatttt aggtttttgc tgacttaaaa actcaagcat tgacttcctt
     2581 ttcaaaaagt ctttttatct cgcctaaata atcttttata ccctcttcaa ggctaaattt
     2641 tggctgataa tcccaagttt gatctagttt tgcttcagtg tggaattgat aagattttac
     2701 ataaggattt gggatatatt cgcaaggcaa atcagtcttt aactcttttt gtaaaatatc
     2761 aactatatct tgaaaggttc ttgctttacc actgcctaca ttataaaccc cgcattttga
     2821 atcaagggcg attaaattgg cattaataac atctttaata taagtaaaat ctctataaat
     2881 ttgatcactt ccttcaaaca agcgtggatt ttttcctgct aaaatttgat ggccaaattg
     2941 taaaaccata gaagcagttt tgtttttata aaattcgcct tttccataaa cattaaaata
     3001 tctaagtcct accaaatgag ctttatcgta gtattttttc gctaacttat ccatcatcaa
     3061 ttttgaaaaa gcataaggat tttttggttc ttcatcttta cctacagttt gcggactttt
     3121 tgcatcgcca taaactgaag ctgaacttgc ataaataagc tttgcattaa gatctatgct
     3181 aagttctata aaatctttaa aagtatttaa attggtttgt aaaaccttag tttgatcaaa
     3241 aaccgtagtg tctgaaattg ctgcttgatg aaaaataatc tctggcttaa aatcttcaat
     3301 cttttttaaa actttttcat cattaatatc gcctgcaaaa agttctccat caaattcaag
     3361 taaattttta aaatgcccaa aactttgcaa atttccattt tcaaaagtcg cactactacg
     3421 cattttatcg atgattaaaa tttcatgttt ttcttgcaaa tttaaagcta gttgcgaacc
     3481 tataaatcct gcgccacctg tgattgctat tttcatttaa atgtcctttt ctttaaaaaa
     3541 gctcaaaatt tcttttaaat ttttaaattg tctaaaaaaa tcaccttctt ttttttcttc
     3601 attcactaaa atcaaagtgc caatattagc atttaaccct gcttgcatat cgcttagatt
     3661 atctccgata aagatagaat ttttcatatc taaatcaaac tcatcttttg cttttaaaag
     3721 cattcctgct ttaggtttgc gacactcaca accttctaaa tgcggacaat gataaatttt
     3781 atcaattttt atatcttgct tggcaaattc tttaagcata taatcacaaa gcttaaaaaa
     3841 atcactttcc ttataatatc ctcttgcaat gcctgattgg tttgtcgcta taaaaagcaa
     3901 ataacttcta gccaaaaaat atctacaaag ttcaaaaatt ccatcacaaa attcgaaatc
     3961 ttctatttta tagacatatt ttttatctat attaatcaca ccgtctctat ctaaaaataa
     4021 tgcttttgtt ttcataaaaa cattataata tagctttttt aaaaagaaaa taaacattat
     4081 ctttaatttc ttaagatttt tattaaaaat aaagatatat aatacctagc aatctaattt
     4141 ttactaagga gaaaacaaat gaaaaaatta ttagtagttt ctgctttggc atgtcttggc
     4201 gtttctgctt ttgctgcaga tggtgctaca ctttttaaaa aatgtgcagt atgccatggt
     4261 gcaaatgctg acaaagttta cttaaacaaa gttccagctt taaaaactct ttcttctgct
     4321 gaaagacttc aatacatgaa agaatattca gaaggcaaaa gaaatgctta tggtcaaggt
     4381 gcgatcatga aacttaacct taaaggttta actgaagaag attttaaagc tatcgaagct
     4441 catattgaaa ctttaaaata atttctaaaa aaggcttttc tttttaagaa agcctttttt
     4501 tatccaaagc ttctttttta cgcctttcta attctatagc atcacgcaaa gaatcctcat
     4561 catcatttaa agtagtaaat ttataatcat cgtcaaattg cttattttta atcccccaaa
     4621 gtaaagttgc caaaatgata aaaaacgcta agatagaaac tcctatcatc atcatgatta
     4681 tactattcat tctttgatcc ttaaagcatt taaaacgact attatactac taaaagacat
     4741 agaaatagca gcaaacaaag gattaatcat acccaaaaaa gccaaaggta tggtacaagc
     4801 attataaaac aaagaaaaag caagattttg cttgataatt ttaaaggtat ttttagataa
     4861 tttgatggct ttttttaaag aaagtaaatc attttttaaa agcaagacat cactactttc
     4921 tatagctaaa tcacttcctt ctcttaaagt catcgaaaca cttgcatatt ttaaagctag
     4981 tgcgtcattt accccatcgc ctacaaataa aactttgtaa tttttactta atttttctat
     5041 agttttcatc ttatcttctg gcaaacaaga agcttgataa ttttgaattt ctaattttct
     5101 agctattttt tccactgctt tttgatgatc accactaagt atcattaatt ctttcttttc
     5161 ttttttaaga taagtgataa gctcttttgc atcttctctt aaaacactat caaactcaaa
     5221 aaaagctaaa attttacctt ccttggcaaa aataaaatgc gtattatcaa attctttagc
     5281 cacaataccc ttttcttgca aaaatttaga acttccgcct aaaagcaacc cttcatttaa
     5341 ctcagcactt aaacctttag cttgaatgct tgaatgcttt ttaaaatcca aatttaaatc
     5401 cttggctcct ttttgcttta aatacgacgc aatattttga gagataggat gtttagaaag
     5461 ttttacaaaa ttataaagct catttaaatc aagcgcttta tctaaaaaaa cctctttaag
     5521 ttcaagctct attttagtta aaatacctgt tttatcaaac actacacaat cacatttact
     5581 taaatcttct atcacgctag aacttttaaa taaaatatgc ttttttaaag ccctacctaa
     5641 ggccacaaga ttgctcacgg gcgttgctaa agccaaagca caaggacaag cgataattaa
     5701 aactgcaatc gcattgacta aagaaatttc aaaactctct tctttgtaaa aaaaccaaaa
     5761 agcaaaacaa ataaaagcga tcaataaaac cgttctagaa aaataagccg aaagactatt
     5821 gaccaaactt tcaagttttg cttttttaga gcttgcaagt tctaaaagct gaataatttg
     5881 actgagtttt gaatccttat aaagctttgt tgcttcatac tccacacttc catcaagcac
     5941 tatacaagct gaaaaaattt catcttcttt ttgtatgagt tttgggatat tttctccatt
     6001 taaagaagag gtatccacgc tcatttcacc acttttacaa atcccatcga ttaaaatttt
     6061 atctccagtt ttaagcaaaa ttctatcccc taaacaaacc ttttgcactt ctttaggagc
     6121 aaattcttta ccatcaaaaa ctaaaacttc attttgtaaa aaatcattaa gcccatctat
     6181 ggtatctaaa gcacgctttt tgctaaacat ctcaagatat tttcctataa atacaaagca
     6241 aattatcatc gccacagaat caaaatacac ttcccccacc ctaaaaaaca tagcccataa
     6301 agaataaata taagccaaac tcgctccgct aattaccaat acatccatat ttaaactatg
     6361 catttttaaa gttttaaaag cacttttata aaaatgagat cccgtataaa aaagcacagg
     6421 agaacaaagg ataaattcag caaaatttaa aatatcctta gtatccttat ccataccgct
     6481 aaaaaatcct gcgtattttg ccactgctat ccacatgata ttcatcacac aagctatagc
     6541 cacaacaagc ttagaataaa attccctttt tagtaaatcc gctttttttg aagccttgct
     6601 cgcatcataa gcactcgctt tatagcctat actttcaata agtcttaaaa tttgcaccaa
     6661 agaaatgctt tgttcatcaa aaacaatgcg tgctttatgg tttaaatgat tgatatcaag
     6721 ttctaaaatt ccttcttgct tggttaaaat tttctcatta agccacacac aagctgcaca
     6781 ttctataccg tgtatcatga gataaatttc actaaatcct tctttagttt tagtgataaa
     6841 ctcatcataa tttttcattt cattttgaaa atttacaggg cttaaggttt gatttccaag
     6901 cttttcataa aactcatcta atccactttc atgcaaaatt tcccaaacgc tctcacaacc
     6961 cttacaacaa aaaaatttac ccttatactc tatcatttga gcttgtttat aatcaagttt
     7021 gcaatgttca catttcataa tcattcttta aaaaaatatt ttttataatt ataaacaaat
     7081 ttgacaaaaa gtgcattttt ttattaaaat cacattttac aaaaattatt ctgctaaatc
     7141 ttacgaggac ttatggaaaa agaaaaaaaa caacatcaaa gaacccacgt tccagtggaa
     7201 ggttataaaa ttgaagaatt aaaattatta gatctagaaa atctagttaa aatcgctaat
     7261 gaatgtgaaa tcgaaaatcc aagagaattt cgccgccaag aacttatttt tgaaatttta
     7321 aaagcacaaa caaaaaaagg cggtttcata ctttttacgg gtatcttaga aatttcttct
     7381 gaaggttatg gctttttaag aggcatggac tccaatctta gtgatagtgt taatgacgct
     7441 tatgtttcaa attcacaaat tagaaaattt gctctgcgtg taggcgatat cgttacagga
     7501 caagttagag aacctaaaga tcaggaaaaa tactacgctc ttttaaaaat cgaagcgatc
     7561 aattatctgc ctttacaaga agccaaagaa agacctttgt ttgataactt aacccctatt
     7621 tttccaacag aaaaaatcaa gctcgaatac gatgcgatga agcttacagg ccgtgtttta
     7681 gatcttttta cccctatagg aaaaggacaa cgcggactca tcgttgctcc accacgcaca
     7741 ggtaaaacag agcttatgaa agaacttgct actgccattg caaaaaacca tcctgaaatg
     7801 catttaatcg tgcttttagt cgatgaaaga cctgaagaag ttaccgatat gcaaagatgt
     7861 gtaaaagggg aggtttttag ttctactttt gatttacctg cttataatca tgtgcgtgta
     7921 gctgaactcg tgatagaaaa agccaaaaga atggtagaaa caggtaaaga tgttattatc
     7981 ttacttgata gcatcacaag actggcgcgt gcttataaca ccgcaactcc aagcagtgga
     8041 aaagtcctaa gcggtggggt agatgctaat gctctgcaca aaccaaaacg cttctttggc
     8101 gcagctagaa atatagaaaa tggaggctct ttaaccatag ttgctacagc tttaattgac
     8161 acaggttcaa gaatggatga tgtgattttt gaagaattta aaggcacagg aaatagcgaa
     8221 atagttcttg atagaaatat tgccgataga agaatttatc ctgcgattaa tatcatcaaa
     8281 tcaggaacaa gaaaagaaga attactccaa ggcgtggcaa atcttcaaaa aatttgggcg
     8341 atccgttcag cgatttctca aatggatgat gttgaggcat tgaaattttt atattctaaa
     8401 atgcttaaaa ccaaagacaa tgtagaactt ttatctataa tgaacgagta aaaaatgctt
     8461 caagccctag cgattaaata caggccaaaa acctttgatg aactcatagg acaaaaaaca
     8521 gttagcgtaa gtttaaaata cgccctaaat cataatcgct tagctcatgc ttatcttttt
     8581 tcaggactta gaggaagtgg aaaaacttca agtgctagaa ttttttctcg tgctttagtt
     8641 tgcgaacaag gaccaagcga tactccatgt ggcacttgca aacactgtct tgcagcactt
     8701 gaaggcaaac atatagacat tatagaaatg gatgctgcaa gcaaccgtgg gcttgaagac
     8761 atacaagcct taatcgaaca aaccaaatac accccttcta tggcaagatt taaaattttc
     8821 atcattgatg aagtacatat gcttacccca caagctgcaa atgcactttt aaaaacctta
     8881 gaagaacccc caagttatgt taaatttata cttgcaacca ctgatccttt aaaactccca
     8941 gctactgtgc tttcaagaac gcaacatttt cgctttaaac aaattccaca gagtgaaatt
     9001 ttaaaccatc ttaaagaaat tttacttaaa gaaaatgtta aatttgaaga agaagcttta
     9061 aaatttatag caagaagtgg caacggatct ttaagagata ctttaacctt gcttgaccaa
     9121 gctattattt tttgtcaaaa tgaaatcagc attagcaaga ttaccgatat gttaggcttt
     9181 ttagatcctc aaaaaatcaa agccttttat caggctatct taacaaaaga caaggaaaaa
     9241 gtttttgcat acttagaaga attacaagac tatgaagcct caaacgtgat tgatgaaatg
     9301 cttttttatt taaaagaaag cttttttgca aaaagtacgg aattttctat tttaatttat
     9361 gaaagatttt tccgtatttt atcaaaagct aaaaatatgc tttgcgatga tgatggcttt
     9421 acgctttgtg ttatggcttt tatgatgatg gaagcaagcc atttaaaaga aattgatgca
     9481 caaatccaag aaatcaaaca agaaaataca acaaatatta cacctaggat cacacctgct
     9541 cctatcatac ctaatcttga gaaaaaaata gaaaaaaatg cttatgaaat cttgcttgat
     9601 agtatttatg atagagattt tgatcttgca gaatgcttta aacaaagcac gaaatttatt
     9661 agttttgaaa acaatacctt aaatataagc tcaaacgcac aaggacaaaa tcgcgataca
     9721 ctcaataaag gttttaaact catacaagaa ctttttaaaa ctaaatttgg agaaaatgct
     9781 aaaattaatg tgcaaaaagc actaacaatt gacgaaaata agcttcaatc cttaactcaa
     9841 gaattaccaa acaatgaaaa caaaaacata gatattcaaa gttctattaa tatgcttaaa
     9901 gaaggggcca aaaaatttga cccacaagaa gatcttaaag aggctcttaa agattgtttt
     9961 ggagagccta gtatagaaaa ttaatcatca tttttaagag agatgaaaat caaagctaaa
    10021 aacatataag ttaccaatct tgtagcatca ggtaaaccgt tccaaacctt gctcatccac
    10081 attccaaacc attctgcagc aactacttgg aaggcaaaaa accataaaat acaacaacaa
    10141 gttaaagaaa caatcccaaa aatcttagca ttatgaaagc tttgggcatc taaatttcta
    10201 gctttaaaca tatcataagc accttttaga gctgttaagg taataaaagt ttcaaaaaga
    10261 ataattgcta tatagcctat atgatgaatc acaggagaag taatagccct ataaactata
    10321 gcattaccca aataatcagg ctttgtatcc atactcatca catgtgaaac aaattggaaa
    10381 ttagaattgc aatctgtcac atttccaaaa accactatac ctgctaacga tgcaacggta
    10441 agcaaaataa taatttttga aaatctaatc attttgctta tgcaaaaaca tttttgttgc
    10501 atttatactc ttttaataat atattttagt aatattaatt atatataata tattattaat
    10561 aaaaattaaa tttttaaatt cttttaagtc ttaaagaatt aaacactaca gtaatagaac
    10621 taaaacacat tgcaagtgct gctatatgag gacttaaagt gataaaaggt acaaatcctg
    10681 ccgcgatagg aatgcaaagc acattataaa taaaagccca aaaaagattt agcttaataa
    10741 tactgcgtgt ttttttagca agtttaaaac atttaaaaat cgccgataaa tcatctttta
    10801 tcaagataaa atctcctgtt ttttttgcaa gttcatttgc ttttgaaaaa ctcatactca
    10861 cacttgcagc agataaagcc gccgcatcat tgatcccatc tcctacaaaa agagtttttt
    10921 taaatttttg aatgatttgt agtttttctt cactcttaag ttgagcataa aattcgtcta
    10981 tttgtaattc tttggctatt ttttctacat tttttacatg atcgccgctt aaaataaaag
    11041 ttttaagatt ttgctttttt aaatttaaca caagctcttt ggctccatct tttaaagcat
    11101 tgcttaacaa aacaccacct aaacactttt tattcttagc aaaatacacc ctaacatatt
    11161 ctttaaaagt atcaaaaaag acatcacttt cttttgtgtc aatttcattt tcgtgcaaaa
    11221 acttcgcact acctgcgaga taaatatcac tatcttcttt gtattttatg ccagaaccca
    11281 caatcactct cccttcaccc tttaaatcaa aaatttgatc tttatgtaaa gccttagcta
    11341 caggatgaga gcttaaactt tcaatttgac ataatttatc aaaatcatct ttagaaagat
    11401 tgtgtttaaa aatattcaaa ttttcctttg tcaatgtacc cgttttatca aaaaaagcat
    11461 acttgactaa ggctaatttt tctaaagcgg caggattttt aataagaatg aaattttttg
    11521 ccgcatttgc acttgccaca accaaagcta taggcgttgc aagacctaaa gcacaaggac
    11581 aagagatcaa aagcacagca caagagtgta aaaaagctgt attcaaatct gcttttagaa
    11641 cccaaaaaac aaaaactaaa aaagcaaaaa atattatacc ccctacaaag tatttagaaa
    11701 tttgatctgc taaatttgcc aaaggacttt tgatatttcc tgcttcaaaa actagatttt
    11761 tgatttgttc taaagtacta tccatagcct ttttgtttgc tttgatcctt aaagcaccat
    11821 ttaaaactac tgctcctgct tgaacttcat cgccttcttt ttttaaaaca ggcaaaaact
    11881 ccccatttaa aaaactcata tcaagctctg cactccctaa aagcactact ccatctgcaa
    11941 caatgctttc tccttctttt accaaaagca catcgccact tttgacaaaa gaacttgaaa
    12001 tttctttgat actttcatct tcaagcaaaa tttttgtctt ttttgtgtct atattttcta
    12061 aaattctttg ataatcttgt gctttaaatt tagccttact ttcaagatat tttcctaaaa
    12121 gcacaaaaga aataatcatc attgcaccgc taaaatacaa atcttcttct ttaaaaattt
    12181 tcaaatacac caaaaaagaa tacacaaaag cactcaaagt ccccaaagct acaagggtgt
    12241 tcatatctaa atttttactt ttaagtccta aaaaagcatg ggaaaaaaag tctctcccac
    12301 aataaaatat cccaaaaaaa ctcaaagcca tttggatatt ttgcgaaaaa gaacttttaa
    12361 caaacatttc aaaatacata ataatcacac tcaaaactat acttaagagc aaattttttc
    12421 ttaattctaa gtgttttttt gccttgtatg cgttcaagct ttgttcatct tctaaaattt
    12481 caaagcctaa attttgaatt tttgcgatga tatccttgcg tttttcttga ttttcaagta
    12541 aaaaaacccc gctagaattc acataagaaa cactagcatc tttaacaccg tcaatttttc
    12601 tacaagctct ttctatagcg ttagaacaat taacgcaagt cattttgcct atttttatac
    12661 gcaattcttc cattataaac gctctacgat ctcaaaacct aaatcttgaa attcttttgt
    12721 aaaatttgtt acttgatttt cttctaaatt taaacttaaa attttttgat ccaaatccac
    12781 ttctatattt ccaaattcat cttcaagaga atttttgatc aaatttacac aattcatgca
    12841 attaacattt tttactttaa atttcatttt cactccttat aggttgtatg gtaatgtgcc
    12901 cgatttcaaa ttcatgtagt aatttatggg ataaatcctg agatagtttt tcaaattcct
    12961 ttagatcgca aactcttact tttaaatgca tggaagctac taacatttta ttggtaattt
    13021 gagtaatatg caaatccacc acctcatcca cactaggatt taaaagcaaa acttgtctta
    13081 ctttttctat atccacagga gaactttcaa gcaagacatt agcactttgt ttaagcaaga
    13141 taatcgccca ttttaaaagc aagattgata atacaatagc taaaatcgta tctatataaa
    13201 caataccact aaaatacacc actatcccac ctataataac cgctaaagaa cccaataaat
    13261 cactcatcat atgcaaaaaa gcggacttca tattgacatt ttctaaattt gcacccttaa
    13321 acatcatcaa agcattaatc ccatttacca aaaagcccaa aatagctaca attatcatgg
    13381 ttttagcgtc aatttctttt ggattaataa atttttctat agcctcataa atgataaata
    13441 aagccgataa aataatggtt agagcattga taaaagccac taaaacttca agacgaaaat
    13501 acccaaaggt cttttgatga tcttgccatt tttctacggc tataatggct aaaaaactaa
    13561 gagctagggc aaaaacatca gaaaacatat gcaaagtatc acttaaaagc gccaaagaat
    13621 ttgaaaggat tgaataaata aattgcacaa gcatcataga aaaagtcatt aaaagagaaa
    13681 tttttaaaat ctttttatcc atactccttg catcagcatg ggaatgatga tgttcatgag
    13741 aatgttcttc gtgattatga tgacaagatt tgttagctaa aggctcgtgt gataaaaatt
    13801 tatacatctt atatcctttt tgcttgacat tttaagatat taagctaaaa aggatataaa
    13861 tatttgttat ttttataaaa attaaaagtc aaaaagctcg cctagccaac tttctttctt
    13921 tttcttttta tagtaatcat tatgctgatg ataagctgag tcattatatc ttgactcttg
    13981 tcttggagct tggttaaaat ttgctgtatt agggacactg cgttctatga ttttgtcaag
    14041 ctctccacga tcaagccaaa cgccacgaca ctttggacaa taatcaatct caactccact
    14101 cctatcactc ataaccaaat ccacattaca aactggacat aacatacaat accttttttt
    14161 aaatttttga tttaaaatta taaaaagaaa tattaaacaa atttgcaaca agttttaatg
    14221 tttttttgca tgtctagtca tcataaaact ttgttcaaaa aatataagca aagtaacact
    14281 cactcctata gctagagcca aagtcacaga aacagttgta aaaaaataat caaaaaattg
    14341 aaccaaaaat tcagacttag ccttcaaatc atcactgcgt ataaaagaaa taagatacaa
    14401 aatcgcttta taagcataaa ttccaggtat cataggaata agagcaggaa aagcgataat
    14461 ttcagcaggg gttttgatga tttttgctaa agcaattcct aaacatccta tacaaaatga
    14521 agcaacaaaa gttgcgattg ctaaagtttg aaaatgaaaa tattccacca aagtaaaacg
    14581 aagcccatgt gcaattgccg ctaaaagagc agataaaata agggttttta agggtggatt
    14641 acaagcataa gcaaagccaa atcccgccac agcagcaaaa aacatatctc ttaaaataaa
    14701 ttcaatcatc ttaaaatccc aaaatccgaa atactaagcg tcatgtaaat tccaagtgct
    14761 atacaacaaa tcaaaatagc cacgctgata atacggctaa gtcccattaa aatatgatct
    14821 tttaatatat caatcacaga atttataaaa aatacccctg gtataagata caagatacta
    14881 gaacccaaag ccacatcaga agtattggta tatcccatat ccagtccaaa aaatacaaac
    14941 cacgatgaga taaaagaaca aaggatgtat tgaattctta aatcaatctt tgctttagtt
    15001 aaaatatatc ttaataacaa tcccacaaaa gttgcaaaaa acaccaaatt tccagcacca
    15061 aaatcaccac caaaaagcct gcaaaaagct gaatttgcca tagaaacaaa taaaagatta
    15121 agcaaataag aatgcttttt ttgttgagaa atttgctcaa aaacgacttt tgctttttca
    15181 agatcgtatt tgtgatcata catagcccag cttaaagcac ttaaatcaaa aataagttta
    15241 aaattaacat gggcatgatg attgggtata acataagttc tttgaatgga gttatcatcc
    15301 atatctacaa catttaaagt gatatgatga aaaaagaaat tgatatttat ctcatagcca
    15361 taaacctcag ctattcttcc tacgcatttt gccaccctag ctgtataagt tccagcacct
    15421 agcaaagttt tagtatatac gattaaaaaa ttagttaatc tttgtatatc aggtttttcc
    15481 attattttaa taatctttga ttgaatttgt tataattata gcaaatttta aaataaataa
    15541 ggagaaaaaa tggcaaaaat cggtatagtt ggtttaggtt atgtaggagc tgctagtgct
    15601 tatagcatag ttactcaagg aatttgttca gaactttact tatatgatat aaaacaagat
    15661 ttagctctag ctcatgcaag agatttggaa gatatgtcag ccattcattt ttcttataca
    15721 aaaatttttc atgtgtcaaa tttagaaaat ttagcttctt gcgatattat cattttagct
    15781 tttagaaaag aaagcttaaa agaattacct agtcgcttag tagaacttca aaacaatatc
    15841 ctcgaactta aagacattgt cttaacctta aaaaatgcta attttaaagg caaatacatt
    15901 gtcgcaacaa atccaaatga caccataact tactacactc aagtattaag ccaattacct
    15961 aaaaatcatg tttttggtag tggaacaaat ttagatagtt caagacttaa gaaattttta
    16021 gccaaagatt taaacataaa ttcaaaagat atttttgctt gtatgattgg tgaacatgga
    16081 gattctcagt ttgcagcact ttctaatgca agcgttttag gacaaaattt attagatttt
    16141 tacaagcaaa aattaggcaa agatttagac atacaagaac tcgaaaaagc cgtgattagc
    16201 gaaggatatt tcatctatga acgcaaagga agaacagaat ttggcatagg aacttcttgt
    16261 gcaaatttgg ccaaagccat cctagaagat agaaaaagtt tacatcctgt aagtgtggtt
    16321 tttgatgata tagctttttc aatgcccgct atcataggaa aagatggtat agaaaaggtt
    16381 tttgaattaa aattcaatga aaaagaaaaa ataaaattag aaaattcaaa acaacaaatc
    16441 aaaaacgcta tacaaagcgt aaaagataaa atttaagcct ttttaaaagg ctttttgatt
    16501 ttgatataaa ttaaacttgc taaaatcaca aaaacaatta taatgattaa aatttgagtt
    16561 aaataagttt taatcaactc ttcattttgt cctatataat aacccaaaaa tacaagtata
    16621 gccacccaaa tagcactacc aagtgcagta aaaagtataa aatttacaag tttcattttt
    16681 accaaacctg caggcataga gatgtactga cgaatccctg gtaaaagacg acaagtaaag
    16741 gttgaaaatt ccccgtgttt gttaaaaaat tcttcaaatt tagcaaattt ggcttcgttt
    16801 ataccaaaat atttacccca ttttaataca aaatttttac cccaaaaaaa gcaaatatag
    16861 taattaatca aagcccctaa aacagaacct aaagtcccac taagtataca aagagtgata
    16921 tcaagttcgc ctttatgtgc caaatatccg gcaggtatca taacaacttc acttggaaaa
    16981 ggtataaaac aactctctaa ggtcattaag ataataatac ccaaataccc ccaagcacta
    17041 gccgtctcaa caacaaaaga aatgatttct tgcatattag ccttatttga agaaaatttt
    17101 aaaaaattgt agcttaaaag attaaacagt aaaaagcggt tttacaccgc ttttttattt
    17161 gcctgcaacc gaaacttgat ttggattgtc cgctgcacga gcgatcatgc actcttttaa
    17221 aacagcagca tcagctggat cgctaacttt tttattaatc cagcgttcaa cttgtttcat
    17281 tgtttttgac tctggctctg gagcttcgta ttttgccatc aaacttgcac aatcagccaa
    17341 agcaatgata ggtaataaac ttgcaaaaag tatttttctc atcttttgct ccttagaatt
    17401 ttacattata cattaacatg atattatcag ctcttgcttt atcttttttc gctccaccaa
    17461 atggtatacc acgattaccc caaatatttt ggatattagt atagcttaag cgtaagaatt
    17521 gatatctatc gagttgataa atcacataaa aatcatgtgc tgttcctctt gtcattctta
    17581 tattaagtgg atcattaata cttggacggc tcatagtata ccagtatcta cttccccaga
    17641 agaactcata ccccactttt aaagccttag taaaatcata acgtccacct acatgcacag
    17701 cataaccatc tttttcatta aattccaatt gagattgcgc aacaggattt gcacttagag
    17761 tatgcgcatt tgctccgtta gaatacccta aagatacaaa ataattaaaa tttgtaccaa
    17821 aagcattata gttttcaaaa tgaatatttg ctaaagttaa atctccaaga ttataaacac
    17881 cttgatttag aatagaagga atactaggca atggtaatgc aaaatcagtc atatgagcca
    17941 cattgaagat aataagatta tctcccatac cttctatagg aagctctcct tctactgcag
    18001 catagtaaag atttgcatca gcatcttttt gattgctcat ccagtctctt accttgcctt
    18061 cttcatccca ttgataagtt ttaccataag ctgcacggat agccacctta tgatcttgca
    18121 aactttcagg tttataagtg atcactgctg catcacctag agcattgatt gctaaggctg
    18181 gataagttga ttgtcttaaa gcattgtttc taagattact tcctgggcca tcggttcctg
    18241 gctgtcttcc tatggttgca atccactcag gtgtgatata gtagtcaaga taagctctat
    18301 ctacataaag cacaggcccg cttgatcttg tgtttcttcc tgcatctagg tcataagggc
    18361 ttccactcca atccatttga gaccagtttt tagccataga taaacgacca tagaatttgg
    18421 ttttatcatt aatatcagca ttcatattta aatgaagctc attcatccat ttgttattag
    18481 cactataatc ttgtccgcta actttatagt ttgtatttga aaccgctgtt gaaaactcaa
    18541 gtccaaattt aaccttgctt aaagcagctt gaaattctgt ttcatcggct ctatcattaa
    18601 gatcagcaag ttcagctttt acagcttcat tttgcttagc ttgagcttct ctttcttttc
    18661 tgatttgtgc aagttcagct tgaatttgtg caagctgttt ttgaagcttg gttatctcat
    18721 catctgcatt tttagcaaaa agtgaagatg aaagaagaca agcacttaaa ataagtgaaa
    18781 acttagtttt cataatcata actccttgta gttttgttac atttagtaaa ttaaaattgt
    18841 gattatagaa aaaaaagttt aaaaaaaaat tatacattaa ttatttttag ctagtcaaat
//
LOCUS       DAZBIH010000021        18603 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.021, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000021 DAZBIH010000000
VERSION     DAZBIH010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18603)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18603)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18603
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.021"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            23..3511
                     /locus_tag="ACHFOB_000612"
     CDS             23..3511
                     /locus_tag="ACHFOB_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline dehydrogenase family protein"
                     /protein_id="HFN5799428.1"
                     /translation="MIQKALALAEELQGQIEANISNSEKEFHAKMQKLLNNPKNKVML
                     IELLDRSFRCKDKNASFELIEYTLSKYGIADFFSTFEKFLLFSFLNFGKFAPNLSVPF
                     FVKHLREDTKAMVLDANPSVLEPHIKKRKEQDKITLNVNLIGEEVLGEAESKYRMQKY
                     EEALKSSYIAYISIKITTIFSQINIIDFNYSKEEVVKRLDYLYALALEEEKKQGVSKF
                     INLDMEEFRDLELTVAAFMESVAKFDIKAGIVLQAYIPDSYKYLKKLFAFSKERVLKG
                     MKPIKIRFVKGANMESEETIASQRGWELPTFYKKIDTDSNYNKMLDFILEGDNYKYIN
                     IGIASHNIFEIAYAYTRISEVGALDSFTFEMLEGMSLQCSYELSKMHDLILYAPVCDE
                     AHFNNAIAYLVRRLDENTSEDNFMRYFFNLKVGDKNWNIQKELFLKSLEGIKTLDNTT
                     HRKQDRNKESNIISSYESKKFSNESDTDFILAQNRAWAKEIKTKYENLKDYDVYPVIG
                     ELDFKAENLNVLEVKDKIEDRVIGKAYLAGEKEIKQALEVAKNSKFTQKSHDEIYQIL
                     AKSAKLMRERRGDLIGLAALEVGKTFLEIDPEVSEAIDFIEFYPHSLEELKKQNPKVT
                     FTPKGIGVTIAPWNFPIGISVGTIAAPLAAGNVVIYKPSSLSTLTGYMLCKCFWDSGI
                     PKDALIFLPSKGSDISKYLLIDEAIKFSILTGGEDTAYAMLKANPTLLLSAETGGKNA
                     TIVSKFADRDSAIKNIIHSAFSNSGQKCSATSLLVLEEEVYHDEEFKKTLVDAASSMA
                     VGNPFEFKNKLGTLADKPSSKVQKALDELQPYEEWALKPKFLEDNPYLMTPGIKYGTK
                     KGDFTHMNELFVPILSVMKAKDLKEAIDIVNSTGYGLTAGFESLDEREWEYFHTHIEA
                     GNIYINKPTTGAIVLRQPFGGIKKSAIGLGRKVGIYNYITQFLEIKQEDFDDHLIEDK
                     FSKKLAQIDLKEAQDFMNNLIKMSQSYAYHYKNEFSVSKDYVNIRGEDNLFSYTKIKN
                     MVLRLCGNESLKDVLGVVLGANIANIDLSISYDEQDVSMIERIVQSIGAKVLFLKENK
                     ENFIKSIKEYERVRYLAKPDVNDEIYKEAAKLAKIIIREKPLLNGRFELLNYFNEKAL
                     SISFHRYGNLGIRAIS"
     gene            3529..4998
                     /gene="putP"
                     /locus_tag="ACHFOB_000613"
     CDS             3529..4998
                     /gene="putP"
                     /locus_tag="ACHFOB_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005298 - proline:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0031402 - sodium ion binding [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0015824 - proline transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium/proline symporter PutP"
                     /protein_id="HFN5799429.1"
                     /translation="MEVVQINTPIAVMFVVYALLMLYIGFYFYKQNKNSEDYFLGGRT
                     MGPVISALSAGASDMSGWLLMGLPGALYVSGFIDSYIAIGLTIGASLNWIFVAKRLRI
                     YTSVIANSLTIPDYFETRFDDDKHILRIVCAVVILIFFTFYVSSGLVSGAKLFESTFG
                     IRYDYALTTGTIIIVAYTFLGGYKAVCWTDMIQGLLMMMALIIVPLVMLYHLGGFGEA
                     MNIVREIKPQALSMGEGVGIVSIISALAWGLGYFGQPHILVRFMSIRSTKDIPMATFI
                     GIAWMAVCLLSACMIGILGIAYVHKFELSLQDPEKIFIVMSQLLFNPWIAGILLSAIL
                     AAIMSTASSQLLVSSSTIAEDFYKKIFREDAPSHIVLNLGKLGVLLVAVIAFLISTDK
                     NSSVLSIVSYAWAGFGASFGSVMLFSLFWSRMTRVGAILGMITGAATVVLWKNFANSG
                     LYEIVPGFLVASAVIIIASLFTNVRSGTKAAYEKMLKEL"
     gene            complement(5014..5241)
                     /gene="yedF"
                     /locus_tag="ACHFOB_000614"
     CDS             complement(5014..5241)
                     /gene="yedF"
                     /locus_tag="ACHFOB_000614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HFN5799430.1"
                     /translation="MKITYSLNLQGEACPYPAIATLDVLPKLKSGEILEVLCDCPQSI
                     NSIPQDVKNRGFKVLEIDQSGPTLRFLIQKP"
     gene            complement(5245..6453)
                     /gene="yedE"
                     /locus_tag="ACHFOB_000615"
     CDS             complement(5245..6453)
                     /gene="yedE"
                     /locus_tag="ACHFOB_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="selenium metabolism membrane protein YedE/FdhT"
                     /protein_id="HFN5799431.1"
                     /translation="MNSFKQKYLINFWDNPRSMIALGILSAVYFGIFGGVWAVTGEMT
                     RWGGEFLELLGMNLDGYSYYQKQNLNGTPLTRTDGIMLIGMFIGCLVAALLANKVKFR
                     LPASNIRIFQAIVGGILSGYGARLAFGCNLANFFTGLPYFSLHTWLFTVFMVLGIYLG
                     VKICNTSFFKPKAKLERVNKENLPLNKQSLRTKLYFNLGILLFIAFLVWVFYLVFTNG
                     NISTQNKQSLLALALIFGFVFGFVISRGQICFTSCFRDLFLFGRDNAIKGALIGMIIA
                     SLIAFAFILQGHTSKLIELSPAVAVGAFLFGFGIVFAGGCECGWTYRAFEGQSHFIIV
                     GIANIIGTMILALSYDFLPKAFKEGIKINLLTEFGNLNGFFINLILFILMFVFVVFYK
                     KHFFKNQLKG"
     gene            6593..6690
                     /locus_tag="ACHFOB_000616"
     tRNA            6593..6690
                     /locus_tag="ACHFOB_000616"
                     /product="tRNA-Sec"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6627..6629,aa:Sec,seq:tca)
     gene            6718..7968
                     /locus_tag="ACHFOB_000617"
     CDS             6718..7968
                     /locus_tag="ACHFOB_000617"
                     /EC_number="6.3.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004019 - adenylosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthase"
                     /protein_id="HFN5799432.1"
                     /translation="MSKADIIVGIQWGDEGKGKVVDKLCENYDFVCRSAGGHNAGHTI
                     WVNGVRYALHLMPSGVLHPRCINIIGNGVVVSPEVLIAEMAQFENLKGRLYISDRAHL
                     NLKHHSLIDIAKEKLKGKNAIGTTGKGIGPSYADKINRTGHRVGELLEPQRLCEALIK
                     DFEANKTFFEMLEIEIPSAEELLADLKRFNEILTPYITDTTRMLWKALDEDKRVLLEG
                     AQGSMLDIDHGTYPYVTSSSTISAGALTGLGLNPKEAGNIIGIVKAYATRVGNGAFPT
                     EDKGEDGEKIAQIGKEIGVSTGRKRRCGWFDAVAVRYTARLNGLDALSLMKLDVLDGF
                     EKIKICRAYEYKGMEIDYIPSDLENVQPIYEEMDGWDKVFGIKDYDLLPENAKKYIAR
                     LEELAGVKVKYISTSPERDDTIIL"
     gene            7965..8393
                     /locus_tag="ACHFOB_000618"
     CDS             7965..8393
                     /locus_tag="ACHFOB_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar export protein FliJ"
                     /protein_id="HFN5799433.1"
                     /translation="MKSKYNSVVKVRKQQLDKAESNLNQAKQRQLEHEKAYELSRQEC
                     ESLGVLPKSGSIAELRSNLSMAQVGREALARAKEKVELSKKEMNHYQFLYQKAHLDYE
                     KMKVLEAEEIKQKQKELAKAEEKFLDEIAISRFFKGEKDD"
     gene            8386..8904
                     /locus_tag="ACHFOB_000619"
     CDS             8386..8904
                     /locus_tag="ACHFOB_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotE family protein"
                     /protein_id="HFN5799434.1"
                     /translation="MIKKFILLVFISSVVFGAEQDCEQYFEARKAQIELQTREFDEAR
                     QSLEAYKASFEALQKERLENLEKKEAEVNATLAKIEELKLENARLVEKQQKILNSIND
                     KTQGRVKEIYSQMKDAAIADVLSQMDAEDASKIMLSLESRKISGVLSKMDPKKASELT
                     LLLKNLDNNASN"
     gene            8997..9548
                     /locus_tag="ACHFOB_000620"
     CDS             8997..9548
                     /locus_tag="ACHFOB_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF507 family protein"
                     /protein_id="HFN5799435.1"
                     /translation="MRIKLPHIPYIANKMMLDIANSSFVEIKDQLEKLKVCIIEVLEK
                     DILNERKLDERVKELLEQQEDEMELMQVDRKNMFWLVKKKLAPEFNVILDSEDRHNHL
                     AHQILEELVENDYINFIVSENRVKNLIFSSIESYLKIYEKLEDEVYEKISNYKTKPIP
                     GSEEYDLIFEKLYQEELRKKGMF"
     gene            9548..10666
                     /gene="carA"
                     /locus_tag="ACHFOB_000621"
     CDS             9548..10666
                     /gene="carA"
                     /locus_tag="ACHFOB_000621"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004088 - carbamoyl-phosphate synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006541 - glutamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HFN5799436.1"
                     /translation="MKAYIYLENDIFLSAKAFGKSGTFFGELVFNTSLTGYQEIISDP
                     SYAGQFIVFSMPEIGIVGTNENDNESKEIFASGVLMRELSSSFSNFRAKESLQDYLEK
                     HGKIGIYELDTRYLVKMIRNNGNLRAVISTEISNKEDLKIALEKSAKIDEVNFVKEVS
                     TKKNYSHKQGVWNASFQKFNDAKRSEKKVAVIDYGVKTNILNELVEVGFEVEVYPYNV
                     KADELITLYKKGEIQGVFLSNGPGEPRILKQEIAEIKKLAEAKIPMLGICLGHQLLSN
                     AFGYETYKMKFGQHGANHPVINLDTKTVEITAQNHNYNVPEELAQVAHITHRNLFGDN
                     VEGVRYKDYPIISVQHHPESSSGPHESKYIFKEFMNLM"
     gene            10663..11322
                     /locus_tag="ACHFOB_000622"
     CDS             10663..11322
                     /locus_tag="ACHFOB_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFN5799437.1"
                     /translation="MSIDFLAIISVAFLSSFGHCYSMCGGFNLLFINLNSKSNNLFLL
                     TFIYNLFRIFAYIVLGIIFGTFGNILAINAKVQSLSFFILGIFMMILGFALIFRGNML
                     SFIENNVFFDSFVKKIIKKSKNFKGLKSAIFLGFSNGFVPCGLVYFFIANAMSKQNIF
                     EGILVMMIFGISTLPAILFFSKISQFFSDFLKNLFNYLSYGVIVCYGINLAYIGFKAF
                     Q"
     gene            11319..12530
                     /gene="bumS"
                     /locus_tag="ACHFOB_000623"
     CDS             11319..12530
                     /gene="bumS"
                     /locus_tag="ACHFOB_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate sensor histidiine kinase-like
                     phosphatase BumS"
                     /protein_id="HFN5799438.1"
                     /translation="MKDFFKDQFFKALEKNTIFSRADVQGNLIFVSDKLCQISGYSKK
                     ELIGKKHSIFKHPDVEECYIEELLKKLSYKKPYQVIFKNIDKLGKTFYLETLLIPILD
                     KNNELIEIVAFSHDVSNSFKLNEELALNHAKLRELSINLENTVKNHQQEFIQLGKKFE
                     KKMQIALEKNEKDIKIAYEEILKSSLEQMISDIAHQWRQPLNELGIAMFQMKQNLKDE
                     KGFAEIYSQSKDMIKNMSETIDVFRTLFNKGVEQCVFIKETLNKALEIAFETIEKNHV
                     NINIVSKSDYEVLAYENGLIRVFLNLILNSIEAFKNKKRKIITINFSKFGKNYLKITI
                     KDNAGGIDKENLDKIFQPYFTTKHPSQGIGVGLYISRQIIESFQGKIKVKNGKDGACF
                     EVFLKLKERVE"
     gene            12533..13213
                     /gene="bumR"
                     /locus_tag="ACHFOB_000624"
     CDS             12533..13213
                     /gene="bumR"
                     /locus_tag="ACHFOB_000624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate response regulator transcription factor
                     BumR"
                     /protein_id="HFN5799439.1"
                     /translation="MSQECKELIILVVEDEIKTRESLINVLSERFSKVIGAQNGDEGL
                     KKFKKFKPDLVITDIAMPIMDGLDMAREIKEISDDVPIVVLSAYSEKERLLRSIDIGI
                     DKYLIKPVDIEELFKVLDCLVGEKIEANMLVKISEEYQFNKTKRTLIHNGKEIVLTKK
                     ELAFISLLLKQPGVLVLHEDIKKNVWIGEHVSDTAVRTFIKRVRDKVGEDFIKNVPSL
                     GYKININK"
     gene            13339..14805
                     /gene="ccoN"
                     /locus_tag="ACHFOB_000625"
     CDS             13339..14805
                     /gene="ccoN"
                     /locus_tag="ACHFOB_000625"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045278 - plasma membrane respiratory
                     chain complex IV [Evidence IEA];
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit I"
                     /protein_id="HFN5799440.1"
                     /translation="MHPGNVLNYDYTVARYFMFATILFGIVGMAIGTLIAFQMAYPNL
                     NYLAGEYATFSRLRPLHTSGVIFGFMLSGIWATWYYIGQRVLKVSMAESRFLMAVGKL
                     HFWLYMLTMVLAVISLFMGVTTSKEYAELEWPLDILVVLVWVLWGVSIFGLIGIRREK
                     TLYISLWYYIATFLGIAMLYLFNNMEVPTYFVTGMGKWWHSVSMYAGTNDALVQWWYG
                     HNAVAFVFTVGIIAQIYYFLPKESGQPIFSYKLSLFAFWGLMFVYLWAGGHHLIYSTV
                     PDWMQTMGSVFSVVLILPSWGSAINILLTMKGEWSQLRESPLIKFMILASTFYMFSTL
                     EGPILSIKSVNALAHFTDWIPGHVHDGTLGWVGFMTMAALYHMTPRVFKRELYSKSLM
                     EAQFWIQTTGIVLYFASMWIAGITQGMMWRATDEYGNLLYSFIDTVVAIVPYYWIRAI
                     GGLLYLIGFFMFTYNIYKTIACGRVLDKEPKSASPMAA"
     gene            14818..15483
                     /gene="ccoO"
                     /locus_tag="ACHFOB_000626"
     CDS             14818..15483
                     /gene="ccoO"
                     /locus_tag="ACHFOB_000626"
                     /EC_number="7.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c oxidase, cbb3-type subunit II"
                     /protein_id="HFN5799441.1"
                     /translation="MFSWLEKNPFFFAVAVFVVIAYAGIVEVLPNFAENARPIEGKKP
                     YTVLQLAGRAVYIKDSCNACHSQLIRPFKSETDRYGMYSVSGEFAYDRPFLWGSKRTG
                     PDLARVGNYRTADWHENHMWDPTSVVPDSIMPSYKHMFKNNADIETAYAEALTVKKVF
                     NVPYDAENGTKLGSWEDAQAEVKAEAQAIVDQMKNQEVKDAFAKGEIKEIVALIAYLN
                     SLK"
     gene            15488..15751
                     /locus_tag="ACHFOB_000627"
     CDS             15488..15751
                     /locus_tag="ACHFOB_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004129 - cytochrome-c oxidase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase, cbb3-type, CcoQ subunit"
                     /protein_id="HFN5799442.1"
                     /translation="MEHLSIVFDVIKNLITFDLATVQKHEWEIFQGYGFFALVMFLSI
                     VLYAYLYHLYRTEKKGERNYENYANLALKDDIDDSVLESKRSA"
     gene            15751..16614
                     /locus_tag="ACHFOB_000628"
     CDS             15751..16614
                     /locus_tag="ACHFOB_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cbb3-type cytochrome c oxidase N-terminal
                     domain-containing protein"
                     /protein_id="HFN5799443.1"
                     /translation="MQWLNLEDNVNLLSLIGAILIILITLVIVGRMFKQMKEKKGESE
                     LSEHSWDGIGEYKNAVPTGWAVVFFLTIVWAIWYFLWGYPLNSFSSIGQYNEEVATHN
                     TKFEEKFKNLSPEDKIAMGQNIFLVQCSACHGITGDGINGKAQNLNIWGSEEGIINVI
                     KHGSKGMNFPGGEMLGAADLGVAEEDIPAIAAYVAKDLSAIKKTANENLVAKGKEAYA
                     TCAACHGEDGKGQDGMFPDLTKYGSAAFVVDVLHSGKAGFIGTMPSFPTLNDIQKEAV
                     GEYVISLSRGE"
     gene            16611..16832
                     /locus_tag="ACHFOB_000629"
     CDS             16611..16832
                     /locus_tag="ACHFOB_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4006 family protein"
                     /protein_id="HFN5799444.1"
                     /translation="MMENNNRCVFSLSGVTGMLIATVLLLAILAVLTIWGLKAQQEVM
                     QKPYSLKDVQSVKMFGSKEQDHRSIKEAQ"
     gene            16829..16930
                     /locus_tag="ACHFOB_000630"
     CDS             16829..16930
                     /locus_tag="ACHFOB_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799445.1"
                     /translation="MSKALEYLIVIGLVVAAAITAWSVLTVNHLHIG"
     gene            16927..17529
                     /locus_tag="ACHFOB_000631"
     CDS             16927..17529
                     /locus_tag="ACHFOB_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799446.1"
                     /translation="MKKILQDGFFLAIFFFVLLPSRVFALDAVLFNENILSQKVSNEI
                     NLIGKELYQKSNIFIGVMVGDKTEIETLLNKQKELPQSYILLLLSKNSHKVDIVGSKG
                     TLALIDKEAVLSPYPGTGSILPILATNKGDIYNAAILNGYADIVDRVAKSLGLQLEHS
                     IGNANRDTINILRILIYGFICFALLYYAQRRIKRKKNVRN"
     gene            17516..18037
                     /locus_tag="ACHFOB_000632"
     CDS             17516..18037
                     /locus_tag="ACHFOB_000632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FixH family protein"
                     /protein_id="HFN5799447.1"
                     /translation="MLETKKSFWPYGILLSLLAIIIACIVTIFIASHHPVYEDDFYFD
                     SYQNVENNYNQIQKQQVNFDKFFKVNFQNDKITFIGKRKIPSYEVDQNSYVANFKISA
                     LQNINSNDLKVQVLLTRPFTKNFDQKLEGQVKNGILSIALPKLDKGRWELKLKFYANQ
                     ETVGFFSYELNAQ"
     gene            18034..>18603
                     /locus_tag="ACHFOB_000633"
     CDS             18034..>18603
                     /locus_tag="ACHFOB_000633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799448.1"
                     /translation="MKLRIFSSSRQIREYYNQKKQQNALLDSAIHIGEFLDKVCLSNF
                     HKASSYESLLLMQEACLKSKDLEKKLGISVEFFAFLKNNEYLFSFFKELSLEKKSIED
                     LKNNDYYATYNEHLEILDEVYKNYLALLEKNSFYDDLSLPKNYTLNKDFLDEYEAIVY
                     DLQGFLSTFEENLLSEISQIKEVVLSFKTS"
BASE COUNT         6591 a         2227 c         3469 g         6316 t
ORIGIN      
        1 attttatctt aggagatacg aaatgataca aaaagcttta gccttagctg aagaattaca
       61 aggacaaata gaagccaata tttcaaattc tgaaaaagaa tttcatgcta aaatgcaaaa
      121 acttcttaat aatcccaaaa ataaagttat gcttatagag cttttagatc gttcttttag
      181 atgtaaagat aaaaatgcaa gttttgagct tatagaatat actttgagta aatatggcat
      241 agcggatttt tttagcactt ttgaaaaatt cctacttttt agctttttaa attttggcaa
      301 atttgctcct aatttaagtg tacctttttt tgtcaaacat ttaagagaag atactaaagc
      361 tatggttcta gatgcaaatc ctagtgtttt agaaccacat attaagaaaa gaaaagagca
      421 agataaaatt accttaaatg tgaatttaat tggcgaagag gttttaggtg aagctgagag
      481 taaatatcgt atgcaaaaat acgaagaagc cttaaaatca agctatatcg cttatatttc
      541 cataaaaatt actactattt tttcacaaat taatattata gattttaatt attctaaaga
      601 agaggtcgta aaaagactag attatcttta tgctttagcc ttagaagaag agaaaaaaca
      661 aggtgtatct aaatttatca atcttgatat ggaagaattt agggatttag agctcaccgt
      721 tgcagctttt atggaaagtg tggctaaatt tgatattaaa gcagggattg ttttgcaagc
      781 ttatattcct gattcttata agtatcttaa aaaacttttt gctttttcaa aagagagggt
      841 tttaaaaggt atgaagccta ttaagatccg ttttgttaag ggtgctaata tggaaagtga
      901 agaaaccatt gcgtctcaaa ggggttggga gcttcctact ttttacaaaa aaatagatac
      961 tgatagtaat tataataaaa tgcttgattt tattcttgaa ggagataatt ataaatacat
     1021 caacatagga attgcaagtc ataatatctt tgagattgct tatgcttata cacgcataag
     1081 tgaagtgggt gctttggatt cttttacttt tgaaatgctt gaaggtatga gtttgcaatg
     1141 ttcttatgaa ttatctaaaa tgcatgatct aatcctttat gccccagttt gcgatgaagc
     1201 acattttaac aatgccattg cttatcttgt aagacgcctt gatgaaaata caagtgaaga
     1261 taattttatg cgttattttt tcaatcttaa agtaggagat aagaactgga atatccaaaa
     1321 agaacttttt ttaaaatctt tagaaggcat aaaaactctt gataatacta cacatcgtaa
     1381 gcaagataga aataaagaat caaatatcat aagttcttat gaaagtaaaa aatttagcaa
     1441 tgaaagcgat acggatttta ttttagcaca aaatagagcg tgggctaaag aaattaaaac
     1501 taaatatgaa aatttaaaag attatgatgt ttatcctgtt ataggcgaac ttgattttaa
     1561 agcagaaaat ttaaatgttt tagaagttaa agataagatt gaagatagag tgataggaaa
     1621 ggcttattta gcaggagaaa aagaaatcaa acaagcttta gaagtagcta aaaattccaa
     1681 atttacacaa aaaagtcatg atgaaattta tcaaatttta gccaaaagcg caaaacttat
     1741 gagagaaaga aggggagatt taataggttt ggcagcttta gaagtgggta aaaccttttt
     1801 agagatcgat cctgaagtaa gtgaagctat tgattttata gagttttatc cgcactcttt
     1861 agaagagctt aaaaaacaaa atccaaaagt tacattcaca cctaaaggta taggggttac
     1921 catagctcct tggaattttc ctataggaat ttcagtaggt actatagctg caccactagc
     1981 cgcaggtaat gtggtgattt acaaaccttc ttcactttca actctaacag gttatatgct
     2041 ttgtaagtgt ttttgggatt cgggtattcc aaaagatgct ttgattttct taccttcaaa
     2101 aggaagtgat atttctaaat atttacttat tgatgaagcg attaaatttt caattcttac
     2161 aggaggagag gatactgctt atgccatgtt aaaagctaat ccaaccttgc ttttaagtgc
     2221 tgaaactggc ggaaagaatg cgactatagt ttctaaattt gctgatcgtg atagtgcgat
     2281 taaaaatatc attcattctg cttttagcaa tagcggtcaa aaatgttcag ctacttcttt
     2341 gctagtctta gaagaagagg tttatcatga tgaagaattt aaaaagactt tagtggatgc
     2401 tgcgagttct atggcagtgg gcaatccttt tgaatttaaa aataaattag gtactttagc
     2461 tgataagcca agttctaaag ttcaaaaggc cttagatgaa ttacaacctt atgaagaatg
     2521 ggcattaaaa cctaagtttt tagaggataa tccttatttg atgactccag gcataaaata
     2581 tggcaccaaa aagggtgatt ttactcatat gaatgaactt tttgtaccga ttttaagtgt
     2641 gatgaaggct aaagacttaa aagaagctat tgatatagta aattccacag gttatggttt
     2701 aactgcaggt tttgaaagct tagatgaaag agaatgggag tattttcaca ctcacataga
     2761 agcaggaaat atttatatca ataaaccaac cacaggggct atagtgctgc gtcaaccttt
     2821 tggtgggatt aaaaaatcag ctataggttt gggtagaaaa gtgggaattt ataattatat
     2881 cactcaattt ttagagatta agcaagaaga ttttgatgat catttaattg aagataaatt
     2941 ttcaaaaaaa ttagcacaaa tagatttaaa agaagcacaa gattttatga acaatttaat
     3001 taaaatgtct caatcttatg cttatcatta taaaaacgag tttagtgttt caaaagatta
     3061 tgtcaatatt cgtggagaag ataatctttt ttcttatact aaaataaaga atatggtttt
     3121 aagactttgt ggaaatgaaa gcttaaaaga tgttttaggt gtggttttag gtgcaaatat
     3181 tgcaaatatt gatctaagta tcagttatga tgaacaagat gttagtatga tagaacgaat
     3241 tgttcaaagc ataggagcaa aagtattgtt tttaaaagaa aataaagaaa attttatcaa
     3301 gagtattaaa gaatatgaaa gagtgcgtta tttagcaaag ccagatgtaa atgatgagat
     3361 ttataaagag gctgcaaagc ttgctaaaat cattataaga gaaaagccat tattaaatgg
     3421 tcgttttgaa cttttaaatt attttaatga aaaagcttta agtatatctt ttcatcgtta
     3481 tggaaattta ggcattagag caatatctta atgatcaagg agagattgat ggaagtggtt
     3541 caaattaata ccccaatagc agtgatgttt gtagtgtatg ccttattaat gctttatata
     3601 ggtttttatt tttataagca aaataaaaat tcagaggatt attttctagg tgggcgtact
     3661 atggggcctg tgatatctgc acttagcgca ggggcttctg atatgagtgg ttggctttta
     3721 atgggtttac caggagcttt atatgtaagt ggttttatag attcttatat tgcaattggg
     3781 cttactatag gagctagttt aaattggatt tttgtggcaa aaagacttag aatttatacc
     3841 agtgtgattg caaattcttt gactattcct gattattttg aaactcgttt tgatgatgat
     3901 aaacatatac tgcgcattgt atgtgcggtg gtaattttga tattttttac cttttatgtt
     3961 tcatcagggc ttgtaagcgg agcaaaactt tttgaaagta cttttggtat cagatacgat
     4021 tatgctttaa ctactggaac gattattatt gttgcttata cttttttagg tggatataag
     4081 gcggtttgtt ggacggatat gatacaaggg cttttaatga tgatggcttt aattattgta
     4141 cctttggtta tgctttatca tttaggtggt tttggtgaag cgatgaatat agtaagagaa
     4201 ataaagccac aagctttatc tatgggcgaa ggagtaggaa ttgtaagcat tatatctgca
     4261 cttgcttggg gtttgggtta ttttggtcaa ccacatattt tagtgcgttt tatgtcgatt
     4321 cgttctacta aagatattcc tatggccact tttataggta ttgcttggat ggcggtttgt
     4381 cttttaagtg cttgtatgat aggtatttta ggtatagctt atgtgcataa atttgaatta
     4441 agtttgcaag atcctgaaaa gattttcatc gtgatgtcgc agcttttatt taatccttgg
     4501 atagcaggta ttttacttag tgctatttta gcggctatta tgagtacggc aagttcacaa
     4561 ttgctggttt caagttctac tatagcggaa gatttttata aaaagatttt tagagaagat
     4621 gcaccaagtc atattgtatt aaatttaggt aaattaggtg ttttattggt agctgtaata
     4681 gcgtttttga tttctactga taaaaactca agtgttttga gtatagtttc ttatgcatgg
     4741 gctggatttg gagcttcttt tggttctgta atgctttttt ctttattttg gagtaggatg
     4801 acaagagtag gagcgatctt aggtatgata acaggagctg ctactgtggt gctttggaag
     4861 aattttgcaa attcaggtct ttatgaaata gttccagggt ttttagtagc ttcggcggtg
     4921 attattattg caagtttgtt tacaaatgta agatctggaa ctaaagcagc ttatgaaaag
     4981 atgttaaaag agctttgaga acaaaagcct tttttaaggc ttttgtatta aaaatcttag
     5041 cgtgggtcca ctttgatcga tttcaagcac tttaaaacca cggtttttta catcttgagg
     5101 tatggaattg atactttgtg ggcaatcgca aagcacttcc aaaatttctc cacttttaag
     5161 cttaggtaag acatcaagtg ttgctatagc aggataagga caagcttcac cttgtaaatt
     5221 taaactataa gtaattttca ctgtttatcc tttaagttga tttttaaaaa agtgtttttt
     5281 gtaaaatact acaaaaacaa acattaagat gaataaaata aggttgataa aaaatccatt
     5341 taaattgcca aattcagtta aaagattgat ttttatacct tctttaaaag cttttggtaa
     5401 aaagtcataa cttaaagcta aaatcatagt tcctattata tttgcaattc ctactattat
     5461 aaaatgactt tgtccttcaa aggcacgata agtccaacca cactcgcaac ctccggcaaa
     5521 aactatacca aaaccaaaca aaaatgctcc cacagctaca gcaggagaaa gttctatgag
     5581 tttgctagta tgaccttgca agataaaagc aaaagcgatt aaagaggcga taatcatacc
     5641 gattaatgcg ccttttatag cattatctct accaaataaa aataaatctc taaagcaaga
     5701 agtaaaacaa atttgccctc tagaaataac aaaaccaaaa acaaaaccaa aaatcagtgc
     5761 taaagctaga agactttgtt tgttttgtgt gctgatattg ccatttgtaa aaacaagata
     5821 aaacacccaa actaaaaagg ctatgaaaag caatatgcct aagttaaaat ataattttgt
     5881 acgcaaactt tgcttgttta acggcaagtt ttctttattt acacgttcta atttagcttt
     5941 aggtttaaaa aaggaagtgt tgcaaatttt cactcctaga taaattccta aaaccataaa
     6001 aacagtaaaa agccaagtgt gtaaagaaaa ataaggtaaa cctgtaaaaa aattagctaa
     6061 attgcatcca aatgcaagtc ttgctccata tcctgaaaga attccaccta ctattgcttg
     6121 aaaaattctt atattgctag caggtagacg aaatttgact ttgttagcta aaagtgcggc
     6181 tactaaacaa cctataaaca tacctatgag cataatacca tcagttcttg ttaaaggggt
     6241 tccatttaaa ttttgctttt ggtaataaga atatccatct aaattcatac ctaaaagctc
     6301 taaaaactcg ccaccccaac gtgtcatttc tccagtaaca gcccaaacgc caccaaaaat
     6361 cccaaaatac actgcactta aaattccaag tgcaatcata gaacggggat tgtcccaaaa
     6421 attgattaaa tatttttgtt taaaagaatt caaagaaaga tcctaaaaat gtaatcatca
     6481 aaacttgatg ctaaaaaaga gtgagattat agcttaaatt taatatgaag tcaaaaagaa
     6541 tattgataaa tttattttgt ttttcattaa aaatcgctat aattatcact ttggaagatt
     6601 agcgtatctg gtgatcgcca ctgacttcaa atcagatgaa aggatagttg actattcttt
     6661 ggggagttcg attctctcat cttctcgcca atattaagta aaatcaagga aatttttatg
     6721 agcaaagcag atattattgt cggcattcaa tggggcgatg aaggaaaagg taaggtagtt
     6781 gataaattat gtgaaaatta tgattttgtt tgcagaagtg caggtggaca caatgcagga
     6841 catacgattt gggtaaatgg tgtaagatat gcgcttcatc ttatgccaag tggagttttg
     6901 catccaagat gtattaatat tatcggaaat ggagttgtgg tttctcctga agtattgatt
     6961 gctgaaatgg ctcaatttga aaatttaaaa ggtagattat atatcagcga tagagctcat
     7021 ttaaatttaa aacatcattc tttaatagac attgcaaaag aaaagctcaa aggcaaaaat
     7081 gccataggaa caacaggtaa gggtatagga ccttcttatg cagataagat taatcgtaca
     7141 ggacatagag ttggagagct tttagaacca caaagacttt gcgaggcttt gataaaagat
     7201 tttgaagcta ataaaacttt ttttgaaatg cttgaaattg aaattccaag tgctgaagaa
     7261 ttgcttgctg atttaaaacg ttttaatgaa attttaactc cttatattac agatactaca
     7321 agaatgcttt ggaaggcttt agatgaagat aaaagagtac ttttagaagg agctcagggt
     7381 tctatgcttg atattgatca tggaacttat ccttatgtta caagttcaag tactatttca
     7441 gcaggcgctt taacaggact tgggttaaat cctaaagaag cgggaaatat tataggtatt
     7501 gtaaaagctt atgcaacgcg cgtgggaaat ggagcttttc ctactgagga taagggcgaa
     7561 gatggagaaa aaattgcgca aattggaaaa gagattggcg taagcacggg acgcaaaaga
     7621 cgctgtggat ggtttgatgc ggttgctgta agatatacag caaggcttaa tggtcttgat
     7681 gctttatctt tgatgaagct tgatgtttta gatggttttg aaaagataaa aatttgtcgt
     7741 gcttatgaat ataagggtat ggaaatcgac tatataccaa gtgatttaga aaatgttcaa
     7801 cctatttatg aagaaatgga tggttgggat aaagtttttg gtataaaaga ttatgattta
     7861 ttgccagaaa atgctaaaaa atatatagca agacttgaag agcttgcagg ggttaaggta
     7921 aagtatattt ctactagccc tgaaagagat gatactatca tcttatgaaa agtaaatata
     7981 attctgttgt aaaggtaaga aaacaacaac ttgataaagc agaatcaaat cttaatcaag
     8041 ccaaacaaag acagcttgaa catgaaaaag cttatgaact ttcacgccaa gagtgtgaaa
     8101 gtttaggcgt attgccaaaa tcaggatcta tagcagagtt aagatcgaat ttaagtatgg
     8161 cacaagtagg acgcgaggct ttggcaagag ctaaggagaa agtagaactt tctaaaaaag
     8221 aaatgaatca ttatcagttt ttatatcaaa aagcacattt agattatgaa aaaatgaagg
     8281 ttttagaagc cgaggaaatt aaacaaaagc aaaaagaact tgccaaggct gaagaaaaat
     8341 ttttagatga aattgcaatc agtcgttttt tcaaaggaga aaaagatgat taaaaaattt
     8401 atattgttag tttttatttc aagtgtagtt tttggagctg aacaagattg tgagcagtat
     8461 tttgaagcta gaaaagctca aattgaattg caaactagag aatttgatga agcaagacaa
     8521 tctttagaag cttataaagc ctcttttgaa gctttgcaaa aagaaaggct tgaaaattta
     8581 gaaaaaaaag aggctgaggt taatgcaact ttggcaaaaa ttgaagaatt aaagcttgaa
     8641 aatgcaaggc ttgtagaaaa acaacaaaag attttaaatt caatcaatga taaaactcaa
     8701 ggtagggtta aagaaattta ttcccaaatg aaagatgcag ccattgcaga tgttttaagt
     8761 caaatggatg cagaggatgc aagcaaaata atgctttctt tggaatcgcg taaaatttca
     8821 ggtgttttat ctaaaatgga tccaaaaaaa gctagcgagc ttactttgct tttgaaaaat
     8881 ttagataata atgctagtaa ttaggtgatt aaaataatga aaatttttca tttttaacat
     8941 tcttttacca aaaataagct attatttcaa acattatcaa ataaaaggtt tttaagatgc
     9001 gtataaaatt accacatatt ccttatatcg caaataaaat gatgttagat atagctaatt
     9061 cttcttttgt agaaattaaa gatcaattag aaaagcttaa ggtatgtata atagaagttt
     9121 tagagaaaga tattctaaat gaaagaaaat tagatgaaag agtaaaagag cttttagagc
     9181 aacaagaaga tgaaatggag cttatgcaag tagatcgtaa aaatatgttt tggcttgtga
     9241 agaaaaagtt agctcctgaa tttaatgtga ttttagattc tgaagataga cataatcatc
     9301 tagcgcatca aattttagaa gaacttgtag agaatgatta tattaatttt atagtgagtg
     9361 aaaatagagt taaaaattta atcttttcaa gcatagagtc ttatcttaaa atttatgaaa
     9421 aacttgaaga tgaggtttat gagaaaatta gcaattataa aacaaaacct attccaggta
     9481 gcgaagaata tgatcttatc tttgaaaaac tctatcaaga agagctcaga aaaaaaggta
     9541 tgttttaatg aaggcttata tttatttaga aaatgatatt tttttaagtg ctaaggcttt
     9601 tggaaagagc ggtacttttt ttggagagct tgtatttaac acttctttaa cagggtatca
     9661 agaaattatt tcagatcctt cttatgcagg gcaatttatc gtattttcca tgccagaaat
     9721 tggtatagtg ggaaccaatg aaaatgataa tgaaagtaag gaaatttttg caagtggtgt
     9781 tttaatgcgt gaattaagtt ccagtttttc aaattttcgc gctaaagaaa gtctgcaaga
     9841 ttatcttgaa aaacatggaa aaataggaat ttatgaactt gatacgagat atctagtaaa
     9901 aatgataaga aataatggca atttaagagc tgtaatttca actgaaattt caaataaaga
     9961 agatttaaaa atcgccttag aaaaatcagc aaaaattgat gaagtaaatt ttgtaaaaga
    10021 agttagcact aagaaaaatt attctcataa acaaggcgtt tggaacgcta gttttcaaaa
    10081 atttaatgat gctaaaagaa gtgagaaaaa agttgctgtt atagattatg gtgttaaaac
    10141 aaatatctta aatgaacttg tagaagtagg ttttgaagta gaagtttatc catataatgt
    10201 taaagcagat gagttgatta ctctgtataa aaaaggtgaa attcaaggcg tgtttctttc
    10261 taatggtcca ggtgagccaa ggattttaaa acaagagatt gcagagatta aaaaacttgc
    10321 agaagctaaa attcctatgc ttggaatttg cttaggtcac cagcttttaa gtaatgcttt
    10381 tggatatgaa acttataaaa tgaaatttgg acaacatgga gcaaatcatc ctgtgatcaa
    10441 tcttgataca aaaacggtag aaattaccgc acaaaatcat aattataatg ttccagaaga
    10501 attagctcaa gtggctcata tcactcatag aaatttattt ggcgataatg ttgaaggagt
    10561 aagatataaa gactatccta ttatttcagt gcaacatcat ccagaaagtt cttcaggtcc
    10621 tcatgaaagt aagtatattt ttaaagaatt tatgaatttg atgtgagtat agatttttta
    10681 gctattatca gcgttgcttt tttatctagt tttggacact gctattctat gtgtggtggt
    10741 tttaatttac tttttataaa tttgaattca aaaagcaata atttattttt attaactttt
    10801 atttataatt tgtttagaat ttttgcttat attgttttag ggataatttt tgggactttt
    10861 gggaatatct tggcaatcaa tgctaaggtt caaagtttgt cattttttat tcttggtata
    10921 tttatgatga ttttgggttt tgctcttatt tttagaggca atatgttatc ttttattgaa
    10981 aataatgttt tttttgatag ttttgtaaag aaaattatta aaaaatctaa aaattttaaa
    11041 ggattaaaat cagccatatt tttaggattt tcaaatggtt ttgttccttg tggattggtg
    11101 tattttttta tagccaatgc aatgagtaag caaaatattt ttgaaggtat tttggtaatg
    11161 atgatttttg gaatatcaac tttacctgcg atattatttt tttctaaaat ttcacagttt
    11221 tttagtgatt ttttgaaaaa tttgtttaat tatttatcgt atggcgttat tgtttgttac
    11281 ggtataaatc ttgcctatat aggttttaag gcttttcaat gaaagatttt tttaaagatc
    11341 agttttttaa agctcttgaa aaaaatacaa ttttttcaag agctgatgtt caaggaaatt
    11401 taatttttgt cagtgataag ctttgtcaaa taagtggata tagtaaaaaa gagcttatag
    11461 gaaaaaaaca ttcaatattt aaacatccag atgttgagga atgttatatt gaagaacttt
    11521 taaaaaaact ttcatataaa aaaccttatc aagttatttt taaaaatatt gataaattag
    11581 gcaaaacttt ctatcttgaa actttattaa tccccatatt ggataaaaat aatgaattaa
    11641 tagaaatagt agcattctct catgatgtta gtaattcttt taagcttaat gaagagcttg
    11701 ctctaaatca cgctaaatta agagaattaa gtattaatct tgaaaataca gttaaaaatc
    11761 accaacaaga atttatacag ttaggtaaaa aatttgagaa aaaaatgcaa attgccttgg
    11821 aaaaaaatga aaaagatatt aaaatagcat atgaagagat tttgaaatct tcattagaac
    11881 aaatgattag cgatatagca catcaatgga gacaaccgtt aaatgagctc ggtattgcca
    11941 tgtttcaaat gaagcaaaat cttaaagatg aaaaaggatt tgctgaaatt tactcacaat
    12001 caaaagatat gattaaaaat atgtcagaaa caattgatgt gtttagaact ttgtttaaca
    12061 aaggagtaga gcagtgtgta tttataaaag agactttaaa taaagccttg gaaattgctt
    12121 ttgaaactat agaaaaaaat catgtaaata ttaatattgt ttcgaaaagt gattatgaag
    12181 ttttggcata tgagaatggt ttaataagag tttttcttaa tttgatttta aattcaatag
    12241 aagcatttaa aaacaaaaaa aggaaaatca taacaataaa tttttcaaaa tttggaaaaa
    12301 attatctgaa aattacaata aaagataatg ctggtgggat tgataaagaa aatttagata
    12361 aaatttttca accttatttt acaacaaaac atcctagtca aggtatagga gtaggacttt
    12421 atataagtag acaaattatc gaaagtttcc aaggaaaaat aaaagttaaa aatggaaaag
    12481 acggggcttg ttttgaagta tttttaaagc taaaagagag ggtagagtaa aaatgtcaca
    12541 agaatgtaaa gaattgataa tattagtagt tgaagatgag attaagacta gagaatcatt
    12601 gattaatgta ttaagcgaac gctttagtaa agtaattgga gctcaaaatg gagatgaagg
    12661 gcttaaaaaa tttaaaaaat ttaaaccgga tttagttatc acagatattg ctatgcctat
    12721 tatggatgga ctggatatgg caagagagat taaagaaatt tcagatgatg tcccaattgt
    12781 tgttcttagt gcatattcag agaaagagag acttttgcgt tccattgata tcggtataga
    12841 taaatattta attaaacctg ttgatataga agaattattc aaagtcttag attgtttagt
    12901 aggtgaaaaa attgaagcaa atatgcttgt aaaaatttcc gaagaatatc aatttaacaa
    12961 aactaaacga actttgattc ataatggtaa agagattgtt ttaactaaaa aagaattggc
    13021 ttttatttct ttgcttttaa aacaacctgg ggttttggtt ttgcatgaag atattaagaa
    13081 aaatgtttgg ataggtgagc atgtgagtga tactgctgtt cgaacattta taaaaagagt
    13141 aagagataaa gtgggtgaag attttataaa aaatgtgcca agtttaggtt ataagataaa
    13201 tatcaataaa taagactgat ttagccttaa aatataaagc ataacaaatg attaacaaaa
    13261 ttatcatttt taagaaaaaa tgtataatta atattctata atattctctt gttatcaaaa
    13321 attttaagga gaaagtcgat gcatccaggt aatgtattaa attacgacta tacggttgca
    13381 agatatttta tgtttgcgac catattgttt ggcattgttg gtatggctat aggaactctt
    13441 atagcttttc aaatggcata tcctaattta aattatttag caggagaata tgccactttt
    13501 tcaagactta gaccacttca tacttcaggt gtgatttttg gttttatgct ttcagggatt
    13561 tgggcaactt ggtattatat aggtcagcgt gttcttaaag tgagtatggc tgagtcaaga
    13621 tttttaatgg ctgttggtaa gcttcatttt tggctttata tgcttactat ggttttagct
    13681 gttatatctt tgtttatggg tgtgactaca tctaaagaat atgcagagct tgagtggcct
    13741 ttagatattc ttgttgttct tgtttgggtt ttatggggtg taagtatttt tggacttatt
    13801 ggaattcgcc gtgaaaaaac cctttatatt tctctatggt attatatagc tacattttta
    13861 ggtatagcta tgctttatct ttttaacaac atggaagtac caacttattt tgttactgga
    13921 atgggtaaat ggtggcatag tgtatcaatg tatgcaggaa caaatgatgc tttagtacaa
    13981 tggtggtatg gacataatgc tgtggcattt gtatttactg tgggtattat tgctcaaatt
    14041 tattacttct tgccaaaaga aagtggtcag ccgattttct cttataaact ctctttattt
    14101 gcattttggg gcttaatgtt tgtttatctt tgggcaggtg gtcaccattt gatttattca
    14161 actgtacctg attggatgca aactatgggt tcggttttct ctgtagtatt gattttacct
    14221 tcttggggtt cagcgattaa tatcttgctt actatgaaag gtgagtggag tcagcttcgc
    14281 gagagtccgt tgattaaatt tatgattttg gcatcaactt tctatatgtt ctcaacactt
    14341 gaagggccaa ttctttcaat taaatctgtt aatgctttag cacactttac agattggatt
    14401 ccaggacatg ttcatgatgg aacattaggt tgggtaggat ttatgactat ggctgcgctt
    14461 tatcatatga ctcctagagt tttcaaaaga gagctttata gcaaatcttt aatggaagct
    14521 caattttgga tccaaaccac aggtatagtt ctttattttg cttcaatgtg gattgcgggt
    14581 attactcaag gtatgatgtg gagagcgaca gatgagtatg gtaacttgct ttatagcttt
    14641 attgatactg ttgtggctat tgttccttat tattggatta gagcgattgg tggattgttg
    14701 tatcttatcg gtttctttat gtttacttat aatatttaca aaacaattgc ttgtggaaga
    14761 gtgcttgata aagaaccaaa aagcgcttcg cctatggcag cataaaaagg agaaaatatg
    14821 tttagttggt tagaaaaaaa tccattcttt tttgctgtag ctgtttttgt agtgattgct
    14881 tatgcaggca tagttgaagt tttaccaaat tttgcagaaa atgcaagacc aattgaaggt
    14941 aaaaaacctt atacggtttt acaacttgca gggcgtgcag tatatattaa agatagttgt
    15001 aatgcttgtc attcacagct tattcgtcca tttaaatcag aaacagatcg ttatggtatg
    15061 tattctgtaa gtggtgaatt tgcttatgat agaccttttc tttggggctc aaaaagaaca
    15121 ggacctgatc ttgctcgtgt aggaaattat agaacggctg attggcatga aaatcatatg
    15181 tgggatccta cttctgttgt tccagattct attatgcctt catataagca tatgtttaaa
    15241 aataatgcag atattgaaac tgcttatgct gaggctttaa ctgtgaaaaa agttttcaat
    15301 gttccttatg atgcagaaaa tggaacaaaa cttggttctt gggaggatgc acaagctgaa
    15361 gtaaaagctg aagctcaggc tatagttgat caaatgaaaa atcaagaagt aaaagatgct
    15421 tttgctaaag gtgaaatcaa agaaatagtt gctttgatcg cttatttaaa tagtttaaag
    15481 taagatgatg gaacatttat caatagtttt tgatgtgatt aaaaatttaa tcacatttga
    15541 tttagcaaca gttcaaaaac atgagtggga gattttccaa ggttatggtt tttttgcact
    15601 cgtgatgttt ttgtcaatag tattatatgc gtatttgtat catttatata gaacagaaaa
    15661 aaaaggcgag agaaattatg aaaattatgc aaaccttgcc ttaaaagatg atattgatga
    15721 tagtgtatta gaaagtaaaa ggagtgctta atgcaatggt taaatttaga agataatgtt
    15781 aatctcttat ctttaattgg agctattctt atcattttaa tcacactggt tattgtgggt
    15841 agaatgttta agcaaatgaa agaaaagaaa ggcgagtcag agcttagtga acatagttgg
    15901 gatggaatag gagagtataa aaatgctgtt cctactggtt gggctgtggt atttttcctg
    15961 actattgttt gggctatttg gtattttcta tggggatatc ctttaaattc tttttcaagt
    16021 ataggtcaat ataatgaaga agtagcaact cataatacaa aatttgaaga aaaatttaaa
    16081 aatttatctc ctgaagataa aatagcaatg ggtcaaaata tctttttagt tcagtgttcg
    16141 gcttgtcatg gaattacagg agatggtatc aatggtaaag ctcaaaattt aaatatttgg
    16201 ggtagtgaag aaggtataat caatgtaatt aaacatggtt caaaaggtat gaattttcca
    16261 ggtggagaaa tgcttggtgc tgctgattta ggtgtagcag aagaagatat ccctgctatt
    16321 gctgcttatg tagcaaaaga tctttcagct attaagaaaa ctgcaaatga aaatttagta
    16381 gcaaaaggta aagaagctta tgcaacttgt gcagcatgcc atggagaaga tggaaaaggt
    16441 caagatggaa tgttcccaga tcttacaaaa tacggttctg cagcttttgt agtagatgtt
    16501 ttacatagtg gtaaggctgg ttttatagga acaatgccga gttttccaac acttaatgat
    16561 attcaaaaag aagctgttgg cgagtatgta atttctcttt caaggggtga atgatggaaa
    16621 ataataatag atgcgtgttt tctctttcag gtgttacagg tatgttaatt gctacggttt
    16681 tgttgcttgc tatcttagca gttttaacta tttggggtct taaagctcag caagaagtga
    16741 tgcaaaagcc atatagtctt aaagatgtac aaagtgtaaa gatgtttggt tcaaaagaac
    16801 aagatcatag aagtataaag gaagcacaat gagtaaggct ttggaatatt taattgttat
    16861 tggtttagtt gttgctgctg caatcaccgc ttggtcggtt ttgaccgtaa atcatcttca
    16921 tataggatga aaaaaatatt acaagatggc ttttttttag ctatcttctt ctttgtttta
    16981 ttgccttcta gggtttttgc tcttgatgct gtacttttta atgaaaatat tttaagtcaa
    17041 aaagtaagta acgagattaa tcttatagga aaagagcttt accaaaaaag taatattttt
    17101 atcggcgtta tggttggtga taaaactgaa attgaaactt tattaaataa acaaaaagaa
    17161 cttcctcaat cttatatatt gcttcttttg tcaaaaaatt ctcacaaagt tgatatagtg
    17221 ggctcaaaag gtactttagc tttgattgat aaagaagctg tgcttagtcc ttatcctgga
    17281 acaggatcta ttttgccgat attagctaca aataaaggtg atatttataa tgctgctata
    17341 cttaatggtt atgcagatat tgtagatcgt gtggcaaaat ccttgggatt acaattagaa
    17401 cattctatag gtaatgcaaa tcgtgatact atcaatattt taagaatact tatctatgga
    17461 tttatttgct ttgcattgtt atactatgca caaagaagaa taaagaggaa aaaaaatgtt
    17521 agaaactaaa aaaagttttt ggccttatgg tattttgctt tcacttttgg ctataattat
    17581 tgcttgtatt gtaacgattt ttatagcaag tcaccatcct gtgtatgagg atgattttta
    17641 ttttgactct tatcaaaatg ttgaaaataa ttacaatcaa atacaaaaac aacaagtaaa
    17701 ttttgataaa ttttttaaag taaattttca aaatgataaa atcactttta taggtaaaag
    17761 aaaaattcct agttatgaag tggaccaaaa ttcctatgtt gcaaatttta aaatttctgc
    17821 attacaaaat ataaattcta atgatttaaa agttcaagtt cttcttacaa gaccattcac
    17881 taaaaatttt gatcaaaagt tagaaggaca agttaaaaat ggaattttaa gtatcgcttt
    17941 acctaaatta gataaaggta gatgggagct taagctaaag ttttatgcaa atcaagaaac
    18001 agtgggtttt tttagctacg aattaaatgc tcaatgaaat taagaatttt tagctcttca
    18061 aggcaaatta gagaatatta taatcaaaaa aaacagcaaa atgctttatt agatagtgct
    18121 attcatatag gtgaattttt agataaagtt tgtttgagca attttcataa agcaagttct
    18181 tatgaaagtt tgcttttaat gcaagaagct tgtctaaaaa gtaaggattt agaaaaaaaa
    18241 ctaggaattt cggtagaatt ttttgctttt ttgaaaaata acgaatatct tttttctttt
    18301 tttaaagaac tgagtttgga aaaaaaaagc atagaagatc ttaaaaacaa tgattattat
    18361 gccacctata atgaacattt ggaaatttta gatgaggtat ataagaatta tcttgctttg
    18421 cttgaaaaga attcttttta tgatgatctt tctttaccta aaaattacac tcttaataaa
    18481 gattttttag atgagtatga agctatagtt tatgatttgc aaggtttttt aagtacattt
    18541 gaagaaaatt tattaagtga aatttctcag attaaagaag tggttttaag ttttaaaacg
    18601 agt
//
LOCUS       DAZBIH010000022        18285 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.022, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000022 DAZBIH010000000
VERSION     DAZBIH010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18285)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18285)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18285
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.022"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            19..771
                     /locus_tag="ACHFOB_000634"
     CDS             19..771
                     /locus_tag="ACHFOB_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine synthase"
                     /protein_id="HFN5799449.1"
                     /translation="MQEKAYKLLALQEKISNREAKDLIDKGCVFSHGKKVVVARALMS
                     DKARFNVIKTKNPQIIFEDDKIIAINKPYAYVSEDLEKKFNAKLLNRLDKETSGVILL
                     CKDEDFRKLCIEEFKKHRVYKSYIAVLDGVLAEEVEVNEPIFTIKAKGGALSKVSKDG
                     LSALSIITPIMMQSKKTLTKIVIQTGRTHQIRVHAKFIKHGVVGDEKYAKISSDRMYL
                     HSYEIKIFDYYFKAELDNSFAKVGFEIKNLDF"
     gene            839..2176
                     /gene="ffh"
                     /locus_tag="ACHFOB_000635"
     CDS             839..2176
                     /gene="ffh"
                     /locus_tag="ACHFOB_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048501 - signal recognition particle,
                     plasma membrane targeting [Evidence IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005048 - signal sequence binding
                     [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HFN5799450.1"
                     /translation="MFELVSESFKSAINKLRFVDDEKALKNALETLKKALLKADVHHK
                     VTKELLTLIEEDVKQNGIGQKQFLNAIKVNLENILSVNGKNQGFVFASKPPTVVLMAG
                     LQGGGKTTSTIKLANYLKLRNKKVLVAACDLQRLAAVEQLRQLCEANEIELFFIENEK
                     DPIRVAKEALKKAESSMVDVLLVDTAGRLAIDEALMNELKVVKDVLNPDEIFYVADAM
                     SGQDGVKTAASFNEVLGISGVILSKFDADTKGGVALGIAKQIGIPLRFIGVGEKVADL
                     EVFIPDRIVSRIMGEGDLATLAEKTAAIIDEKEAKKLNQKIKKGEFNFNDFLNQMESI
                     KKLGSMKSLIGMIPGLGGMANAVKDIDLDNSKEIIRIKAMISSMTPKERENPDLLNNA
                     RKRRIAEGAGLSQVEVNRFLKQFSNAAKLAKRFSGKKGMESLTQMMSQARRQF"
     gene            2241..2468
                     /gene="rpsP"
                     /locus_tag="ACHFOB_000636"
     CDS             2241..2468
                     /gene="rpsP"
                     /locus_tag="ACHFOB_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HFN5799451.1"
                     /translation="MTVIRLTRMGRTKRPFYRIVVTDSRKRRDGGWIESIGYYNPMVE
                     PEVIKVDAERLAYWKSVGAKLSDKVASITSK"
     gene            2471..2713
                     /locus_tag="ACHFOB_000637"
     CDS             2471..2713
                     /locus_tag="ACHFOB_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HFN5799452.1"
                     /translation="MVENFLREYAKLIADYPEQIDTQKIELSENFFEIVLFAHKVDTG
                     KLIGKNGKMINAIKTVISAYKSKDASSYRVTVKALE"
     gene            2706..3245
                     /gene="rimM"
                     /locus_tag="ACHFOB_000638"
     CDS             2706..3245
                     /gene="rimM"
                     /locus_tag="ACHFOB_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344130.1"
                     /note="Essential for efficient processing of 16S rRNA;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0043022 - ribosome binding [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HFN5799453.1"
                     /translation="MSEKDFVQVAKLGKTVGLKGYVKLHNLSDFSSQFKKDATFFIKN
                     TKEMLKIKHYNASNSTVLFENYEDIEKAKELINLILFQSIEKSRQTCKLKKDEFFYFD
                     ILECEVFEEDKRLGKVIDILETGASYLFEIQSDEKWVEKKYPKIFFIPYLDKFVKNID
                     IEKRQIFCTQDAFLILENS"
     gene            3242..3946
                     /gene="trmD"
                     /locus_tag="ACHFOB_000639"
     CDS             3242..3946
                     /gene="trmD"
                     /locus_tag="ACHFOB_000639"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052906 - tRNA
                     (guanine(37)-N1)-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HFN5799454.1"
                     /translation="MKFSFVSLFPNLMEFYFQDSILARAKEKKLFKLNFYNPRDFSKN
                     SYHKVDDYKIGGGAGLLMQAEPMYEVLRSIQEKKENPYFIFLNPSGKTFNQKDAKRLS
                     KKEHIVFVCGRYEGIDERVLEIFANEVFSIGDFILTGGELPALVMCDAILRNVNGVLG
                     NMESLEEESFENNLLEAPAFSKPFIFEKKNKKFYTPSEFLKGNHARIASLKTTLASCK
                     TKFFRPDLFLEHERKK"
     gene            3957..4313
                     /gene="rplS"
                     /locus_tag="ACHFOB_000640"
     CDS             3957..4313
                     /gene="rplS"
                     /locus_tag="ACHFOB_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000311 - plastid large ribosomal subunit
                     [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HFN5799455.1"
                     /translation="MKNKYIEQFEAKQIEGKNVPDFRAGDTLKLAIRIKEGDKTRIQN
                     FEGICIARRGNGVSETFIVRKMGANNVGVERIFPIYSESLESITVLRRGRVRRARLFY
                     LRDRRGKAARIKELKK"
     gene            4446..4859
                     /gene="uraH"
                     /locus_tag="ACHFOB_000641"
     CDS             4446..4859
                     /gene="uraH"
                     /locus_tag="ACHFOB_000641"
                     /EC_number="3.5.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033971 - hydroxyisourate hydrolase
                     activity [Evidence IEA];
                     GO_process: GO:0006144 - purine nucleobase metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyisourate hydrolase"
                     /protein_id="HFN5799456.1"
                     /translation="MFSIKKTLLILASVPMFLSATEYQLSTHVLDITSGQPAPKVKVE
                     LYKLEANQQWKKVSEEFTEENGRIGDLLPYEKAENRAFGIYKLKFFTKDYYTSHKINT
                     FYPFVEVSFELSKDQKHYHVPITLSPFGYSTYRGS"
     gene            4883..6223
                     /locus_tag="ACHFOB_000642"
     CDS             4883..6223
                     /locus_tag="ACHFOB_000642"
                     /EC_number="2.5.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003849 - 3-deoxy-7-phosphoheptulonate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II 3-deoxy-7-phosphoheptulonate synthase"
                     /protein_id="HFN5799457.1"
                     /translation="MWTKNSWKNYPIKQQPIYPDQEEMNRVLARLEKLPPLVFAGEVR
                     NLQKSLARVCKKEAFLLQGGDCAESFENFGAVNIRDMFKILLQMAIVLTFAGGCPVVK
                     IGRIAGQFAKPRSSDFEELNGISLPSYRGDIINGFEFSEQARIPDPHRMLEAYYQSAT
                     TLNLLRGFAKGGLADLHEVHRWNLGFLKKSELHKQYTDISEKISQALAFMEACGINTS
                     NTPSLREVSVYTSHEALLLPYEEALTRVDSLSGEIYDCSAHMLWIGERTRALDEAHVH
                     FLRGVKNPLGVKIGPSASADDIIALANVLNPNNEEGRLNIIIRMGADKIINNLPKIFS
                     KLKSEGLNLVYSIDPMHGNTVKAGNFKTREFDKIMQEVRSFFEIAISEGVYPGGVHLE
                     MTGKDVTECTGGASNVTAQSLEDRYETQCDPRLNADQALELAFLIADLVKKARK"
     gene            6220..6549
                     /locus_tag="ACHFOB_000643"
     CDS             6220..6549
                     /locus_tag="ACHFOB_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArsC/Spx/MgsR family protein"
                     /protein_id="HFN5799458.1"
                     /translation="MKLYGIKNCNSVKKAMDALTQKGIVFDFMDIKKINQDILYTWLK
                     QKSFEELINTAGLTSKKLGLNKEKVKNLNEKELEKIVLENPSCIKRPIIEYEQNIYIG
                     KEYEKML"
     gene            complement(6562..6804)
                     /locus_tag="ACHFOB_000644"
     CDS             complement(6562..6804)
                     /locus_tag="ACHFOB_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_255349556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:complement(6772..6774),aa:Sec)
                     /transl_table=11
                     /product="SelT/SelW/SelH family (seleno)protein"
                     /protein_id="HFN5799459.1"
                     /translation="MKVKIAYCNLUNYRPQAARVAEELQSDFKDVEVEFEIGGRGDFI
                     VEVDGKVIFSKTQLINCESERFPYQNEINQLIKNRV"
     gene            6997..10599
                     /gene="dnaE"
                     /locus_tag="ACHFOB_000645"
     CDS             6997..10599
                     /gene="dnaE"
                     /locus_tag="ACHFOB_000645"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HFN5799460.1"
                     /translation="MSQFTHLHLHTEYSLLDGANKLKELALTLKEQGATSVAMTDHGN
                     MFGAIDFYQTMKAQGLKPIIGMEAYLHNHDELDDKSSRQRFHLCLYAKNEIGYQNLMY
                     LSSQSYIKGLYYYPRINKKLLEDHSEGLICSSACLQGEVNWHLNTYSERNVRFGAKGY
                     EAAKEAALWYKKVFKDDFYFEIMRHGIGDQRMIDDDIIRLSKELNIKIIATNDTHYTF
                     KERAAAHEVFMCIAMGKKLNDPDRMRHSVHEFYVKSPEQMSELFADIPEAIENTQEIA
                     QKCNLDLNLGNPTPPNFKFTREYAKDHNIILPEETKEFSFDNDDIVFEELCKKGLEER
                     LKFIDESKHEEYKQRLEVEINIIKNMKFSGYMLIVHDFIKVAKDKGIPVGPGRGSAAG
                     SLVSYCLRITDLDPIPYSLLFERFLNPERVSMPDIDVDFCQDRRAEVIDYVIDKYGAD
                     KVAQVITFGKLLAKGVIRDVARVCDMSIQDADELAKLVPEELKITLDAAYEKEPKIKE
                     FIDRHPKGPEVWEYARALEGLNRNAGMHAAGVVISNESLWKKTPLFRQSKNDERHLVT
                     QYSKDHLEDVDLIKFDFLGLKTLTVINNAIKLIKKRYNKDIIWETIDVNDSKVYKTIQ
                     SGNTLGIFQIESGGMQSLNARLKPERFEDIIAVLALYRPGPMESGMLDDFIDRKHGLK
                     SIEYPFDSLEKVLEPTYGVIVYQEQVMQIVQIIGGFSLGGADVVRRAMGKKDPEKMKK
                     LKTDFADGAEKQGYDRAKAEDLWELIVKFAGYGFNKSHSAAYALITFQTAYLKTYYPS
                     EFMAALLTSEENNVDKIAVYIDEMKKMNIKLLPPSINKAIREFSALEQDGKDAIIYGL
                     GAIKSVGIPAVENLLEARQDGEFKDINDFLGKIDPTKINRRTLESLIKAGAFDEFGFT
                     RKALFDNMENLSEASRKMAEVRKNAASSLFGEEELTSGVQVNFTPKNEEFEVMEKLGY
                     EKEILGIYVSGHPLDRFYEQINAIDYVKSLDFESLKNNGEILSIGKIEDFKSMMSKNN
                     KRYGRIEILDYYSSFDATVFESNVEEIENIIKDENLKNNAYGFVLGFKAEGGEKPSFF
                     LKAIKDLQSLEDGEIKAIKKFGAKKDFKNKEENHFTAEPKEFEKNIIELDLTRLNREL
                     IYEIHEIARNAHNPNEKNNKKLVLKVISAGSCLLYHTDFIISDSIVEEISNKYA"
     gene            complement(10612..11244)
                     /locus_tag="ACHFOB_000646"
     CDS             complement(10612..11244)
                     /locus_tag="ACHFOB_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HFN5799461.1"
                     /translation="MTLEQILEKTKNVRLVAASKYVDASIIEKLFDQGIVEFGENQVQ
                     ALAQKKENLDEKKLDIKWHFIGTLQSNKINLLIKQKPILWHSCNGIKIAKAMDKRLDY
                     KLNTLLEINSANENSKSGLDPNQAVEEYLQIQEECSNLNLCGVMSIGSHSQDKESIIK
                     SFETTFKIYEILQKHGAKICSMGMSNDFEIAIKCGSNLVRLGSILFKNLK"
     gene            complement(11280..12029)
                     /gene="flaC"
                     /locus_tag="ACHFOB_000647"
     CDS             complement(11280..12029)
                     /gene="flaC"
                     /locus_tag="ACHFOB_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin C"
                     /protein_id="HFN5799462.1"
                     /translation="MMISDATMMQQNYYLNNAQKASDKALENIAAVRAISGVDSANLA
                     IADSLRSQSSTIDQGVANAYDAIGVLQIADASLTNISQSADRLNELSVKMNNAALNDS
                     QKGMLRTEATRIQESINNSFNNATYNGKNVFQTMNFVVGSGTETTNLNPLATGGLSID
                     NQDSITNFMDQLGSLRSEIGSGINAITSNINASVQNSINSKAAENNLLNNDMAKNVND
                     FNANYLKENAAAFVAAQSNMQLQSKIANLLQ"
     gene            complement(12068..12538)
                     /locus_tag="ACHFOB_000648"
     CDS             complement(12068..12538)
                     /locus_tag="ACHFOB_000648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4149 domain-containing protein"
                     /protein_id="HFN5799463.1"
                     /translation="MKAVNLFLLASIIGVELILGIVVAPTIFFPQNLIGEGVLSHFHS
                     GLMMTQIFIKMGYLLIFVSVVNFLYEIYSLIKDEMKFQIKFSKFMLSLLILILSLIFV
                     FYFTNTIIELQNLGENATKTQEFISIHNASEVVIKIILIMQVFLYFLSFKIAKK"
     gene            complement(12551..13366)
                     /locus_tag="ACHFOB_000649"
     CDS             complement(12551..13366)
                     /locus_tag="ACHFOB_000649"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK/PrmC family methyltransferase"
                     /protein_id="HFN5799464.1"
                     /translation="MTIKNALMEAKSSLKGYENEAVFILCEYLKKDKAWLFLNQDIQI
                     DHEPYFELIRRFKSGEPFEYIFEKVDFWGLEFKIKKGVLIPRYDSEILLFQILNLCKK
                     NTFNGILEIGFGSGILSIVLAKELGLKITACDINPKALELALENAKLHKVDHLIDFKL
                     CNFKQIKENYDFIFSNPPYIKNSYPIDIWVQKEPKEALFGGEKGYEILEEIIHFSLDK
                     KVKFLACEFGYDQKEILEKILYQNNFIVDFFKDEQDYNRAFIAKLTNMRYDKK"
     gene            complement(13363..14550)
                     /locus_tag="ACHFOB_000650"
     CDS             complement(13363..14550)
                     /locus_tag="ACHFOB_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HFN5799465.1"
                     /translation="MTLIAILCLYTALLSWISYTQIRFLEKEKDKQAQILSEKDYQNA
                     ADIAIENEKFKLFSNFYNLIINVAWIGFGFLYLKELLISNNTRFENTLFLLSFLIITS
                     ILNLPLNIYESFIKDKAHGFSNMTAKLFIKDTVKSLILTLIFGFLILYALLFCYDFFG
                     TFWWIAAFIFAFCIIVIINLIYPTLIAPIFNKMEKLNDENLLKKISSLMKQCGFSANG
                     VYVIDASKRDKRLNAYFGGLFKSKRVVLFDTLLKALNERELLAVLGHELGHFVHKDII
                     KALFNGAITMFLLFFVFANLPEFVYLESHLEGVNGGVFALLFIFANIFSFLISPMLNA
                     LSRKNEFAADQHGAKVTSKEDMKNALIALARENKAFIKTSKIYTFFYLSHPSISDRIK
                     ALS"
     gene            14677..14862
                     /locus_tag="ACHFOB_000651"
     CDS             14677..14862
                     /locus_tag="ACHFOB_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein"
                     /protein_id="HFN5799466.1"
                     /translation="MFFKKKISQKQKEKPKIPINDMILDDRLCKFKNKVQKISKDEAS
                     ASLLARQLSRLIRANKF"
     gene            complement(14859..15401)
                     /gene="mog"
                     /locus_tag="ACHFOB_000652"
     CDS             complement(14859..15401)
                     /gene="mog"
                     /locus_tag="ACHFOB_000652"
                     /EC_number="2.7.7.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin adenylyltransferase"
                     /protein_id="HFN5799467.1"
                     /translation="MDTINIGILTLSDRASSGIYEDKATAEIERVLNSYIKNDIIYHK
                     ELIPDDYDLIIKKLLYLADEKKCDLIVTSGGTGPALRDVTPEATEAVCDKMMPGFGEL
                     MRLESLKYVPTAILSRQSAGIRNKSFIINLPGNPKAIKECLEPVFPAIPYCIDLIEGA
                     YIEANDEVIKVFRPKKKCQN"
     gene            complement(15422..16405)
                     /gene="corA"
                     /locus_tag="ACHFOB_000653"
     CDS             complement(15422..16405)
                     /gene="corA"
                     /locus_tag="ACHFOB_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015087 - cobalt ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0015095 - magnesium ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006824 - cobalt ion transport [Evidence
                     IEA];
                     GO_process: GO:0015693 - magnesium ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium/cobalt transporter CorA"
                     /protein_id="HFN5799468.1"
                     /translation="MLYVYIKTQNALVQRINFNLDSQELPQNILWIDLLHPSAAEIAF
                     ISSEFNLEFPTKEEREEIELSAKYWEDNATITINAHFLVRDLKSDEEDRNLIKLRTEI
                     VTFATAKNILFTIRYNEFSTFEEIQARILASPKNFEDGFDIIDKMFEVRVEKDADLLE
                     WIDKEARRLRTSVLEKKDEYSYDEMLKDISSLQELNMRVRDSLFDKRRAMTSLLKSDK
                     IDKDIKQNLTIVLKDLNSLVEFSVSQLNILDNIQTILASQINIEQNKIIKIFTVATVA
                     MMPPTLIGTVYGMNFKFMPELELHYAYPIVLGVMVISIILPLVVFKKKGWL"
     gene            complement(16519..18273)
                     /locus_tag="ACHFOB_000654"
     CDS             complement(16519..18273)
                     /locus_tag="ACHFOB_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799469.1"
                     /translation="MFDKIHYYYFNANYEKCLNLSEQFLKESPKFALEFAMLSSYKLS
                     LFQKALYYAQELFSLNPTSFNGLMLAKSYIENLRLDEALNLLQTLLTRKDDLEDELKL
                     ELAFIYKLSNKLEESEQIFKELLSKDMYNLNLWKNYAEIYFKHDFTKALNAHEHLCHF
                     MQDLIDKLQKGIIAEQTNLNLIKLEDRLHSKTKENLTISKIEDFLTHQILPQKAYLLF
                     KLFRISDSLELFQSLQEANQHHAQFWQNYAKVLEFNSNYQEAYYAYKKCLSLDSHATY
                     QFDLAYLLMRMGVDDNFEEGKKYYESRLFYAHNETFSTYHYNESLKAFNKFGVDAFKN
                     KEVLVFCEQGFGDTIMYARCLEKLCKIASKVLFAPQSAMYEMFKNQIKFLNQNDDIFK
                     NVKVLKNLPTNFDYAIPICSLPFFIDIKLDEISRLKTPILPQKKPHNKRKKLGIFYAT
                     PNAENSDLLRNVKFEFLFDILKDLDYEIISFQMQLKEELPKVIEDRSKLIKNWNDTLN
                     YLYDIDCMLSIDSAIAHLSLAMDIPTIVLLHPRFDWRWGKFENPKSYFWPKAKCFIIK
                     EQEETKRNLQKLIKDILN"
BASE COUNT         6500 a         2413 c         3065 g         6307 t
ORIGIN      
        1 ccatacaaaa gggaattgat gcaagaaaaa gcttataaac tcttagcttt gcaagaaaaa
       61 atttcaaatc gtgaagctaa agatttgatt gataagggtt gtgttttttc acatggaaaa
      121 aaagttgtgg ttgctagagc tttgatgagc gataaggcaa gatttaatgt gataaaaacc
      181 aaaaatcctc aaattatttt tgaagatgat aagattattg ctattaataa accttatgct
      241 tatgtgagcg aagacttgga gaaaaaattt aatgccaagc ttttaaatcg tttagacaaa
      301 gaaacaagcg gtgtgatttt gctttgcaaa gatgaagatt ttagaaagct ttgtatagaa
      361 gaatttaaaa aacatagagt ttataaaagt tatattgcgg ttttagatgg ggttttggct
      421 gaagaggttg aagtgaatga gcctattttt accataaaag caaaaggcgg ggcgttaagt
      481 aaagtttcaa aagatggttt aagtgcctta agcatcatta ctcctattat gatgcagtca
      541 aaaaaaacct taacaaaaat agtcattcaa acaggtagaa ctcatcaaat cagagtgcat
      601 gctaaattta taaaacatgg cgttgtaggt gatgaaaaat atgctaaaat ttcaagcgat
      661 agaatgtatt tacatagtta tgaaattaaa atttttgatt attattttaa ggctgagcta
      721 gataatagtt ttgcaaaagt tggctttgag ataaaaaatt tagattttta aagccattta
      781 agaaaaaatt ttgtataatg caaggtttaa tttaaaaatt ttatagaaag gtgataaagt
      841 gtttgagtta gttagcgaat cttttaaatc agcgattaat aaattacgtt ttgttgatga
      901 tgaaaaagca cttaagaacg ctttagaaac cttaaaaaaa gctcttttaa aagcagatgt
      961 tcaccataag gtaactaaag agcttttgac tttgatagaa gaagatgtaa agcaaaacgg
     1021 aataggtcaa aaacaatttt taaatgccat taaagtaaat ttagaaaata ttttaagtgt
     1081 caatggcaaa aatcaaggtt ttgtttttgc ttctaaaccc ccaacagtag ttctaatggc
     1141 aggtttgcaa gggggcggta agactacaag cactatcaaa cttgcaaatt atttaaaatt
     1201 acgcaataaa aaagttttag ttgcagcttg tgatttacag cgtctagcgg cagtggagca
     1261 gctaagacaa ctttgtgaag ctaatgaaat tgaacttttc tttatagaaa atgaaaaaga
     1321 tcctattagg gttgctaaag aggctttaaa aaaggctgaa agttctatgg tggatgtttt
     1381 gcttgtggat actgctggac gtttggctat agatgaggct ttgatgaatg aattaaaagt
     1441 agttaaggat gttttaaatc ctgatgagat tttctatgtt gctgatgcaa tgagtggtca
     1501 agatggggtt aagactgcgg ctagttttaa tgaagtttta ggtatcagcg gggtaatttt
     1561 atcaaaattt gatgcagata ctaaaggtgg agtagcctta ggtatagcaa aacaaatcgg
     1621 tattccttta agatttattg gtgtgggtga aaaagtagca gatttagaag tttttatacc
     1681 agatcgtata gtaagtcgta ttatgggtga gggtgatttg gcaactttag ctgaaaaaac
     1741 tgctgcgatt attgatgaaa aagaggctaa aaaactcaat caaaaaatta aaaaagggga
     1801 gtttaatttt aatgattttc ttaatcaaat ggaaagtatt aaaaaattgg gaagtatgaa
     1861 atctttaatc ggcatgatac caggacttgg cggaatggca aatgcggtaa aagatataga
     1921 tttggataat tctaaagaaa tcatacgcat taaagcaatg atttcttcaa tgactccaaa
     1981 agaaagagaa aatcctgatt tattaaataa tgctagaaag cgtcgtatag cagagggagc
     2041 aggtctttct caggtagaag tcaatcgttt tttaaaacaa tttagcaatg cagcaaagct
     2101 tgcaaaaaga ttttcaggta aaaaaggaat ggaaagttta acacagatga tgagtcaagc
     2161 tagaaggcaa ttttaaattt tatttataaa tactttttat agtatctata aataaaattt
     2221 ttaattttta aggagtataa atgacagtta ttagacttac aagaatgggt agaactaaaa
     2281 gaccatttta tcgtattgta gttacagaca gtagaaaacg tcgtgatggt ggttggatag
     2341 aaagtattgg gtattataat cctatggtag aacctgaggt aattaaagtt gatgcagagc
     2401 gtttagctta ttggaaaagt gttggtgcaa aacttagcga taaagttgct tctatcacta
     2461 gcaaataatc atggtagaga attttcttag agaatacgca aaattaattg cagattatcc
     2521 tgaacagatt gatactcaaa aaattgaatt aagtgaaaat ttttttgaga ttgttctttt
     2581 tgcacataag gttgatacag gtaagcttat aggtaaaaat ggaaaaatga tcaatgctat
     2641 aaaaaccgta atctctgctt ataagagcaa ggatgcaagt tcttatagag taacggtaaa
     2701 agcacttgag tgaaaaagat tttgttcaag ttgcaaaact tggtaaaact gtgggtctta
     2761 agggttatgt aaaattgcat aacctgagcg acttttcttc tcaatttaaa aaagatgcta
     2821 ctttttttat aaaaaacacc aaagaaatgt taaagattaa gcattataat gcaagcaatt
     2881 ctactgtttt atttgaaaat tatgaagata tagaaaaggc caaagaatta attaatctta
     2941 ttctttttca gagtatcgag aaaagcagac aaacttgtaa attaaaaaaa gatgagtttt
     3001 tttattttga tattttagag tgtgaagttt ttgaagaaga taaaagatta ggtaaagtga
     3061 ttgatatctt ggaaactgga gcttcttatt tatttgaaat tcaaagtgat gaaaaatggg
     3121 ttgaaaaaaa atatcctaaa atatttttta ttccatattt agataaattt gttaaaaata
     3181 tagatataga aaaacgacag attttttgca cgcaagatgc ttttttaatt ttagaaaatt
     3241 catgaaattt agcttcgttt ctttgttccc taatcttatg gaattttact ttcaagattc
     3301 tatacttgca agagcaaaag aaaaaaaact tttcaaactt aatttttata atccaagaga
     3361 tttttctaaa aattcttatc ataaagtcga tgattataaa ataggtggtg gagctggact
     3421 tttgatgcaa gctgaaccta tgtatgaggt gctaagaagt attcaagaaa aaaaagaaaa
     3481 tccctatttt atttttttaa atccaagtgg taaaaccttt aatcaaaaag acgccaaacg
     3541 cttaagtaaa aaagaacata tagtttttgt atgcgggcgc tatgaaggta tagatgaaag
     3601 agtgcttgaa atttttgcga atgaagtttt tagcataggg gattttattt taacaggagg
     3661 agaattacct gcgcttgtaa tgtgtgatgc gattttaaga aatgttaacg gggttttagg
     3721 aaatatggaa agtttggaag aagaaagctt tgaaaataat ttactcgaag cgcctgcttt
     3781 ttcaaaacct tttatttttg agaaaaaaaa taaaaaattt tatactcctt cagagttttt
     3841 aaagggtaat cacgctagaa ttgcaagttt aaaaactact ttggcgtctt gcaaaacgaa
     3901 attttttcgt ccagatttat ttttagagca tgaacgcaaa aaataaggga ttttttatga
     3961 aaaataaata tatagaacaa tttgaagcaa aacaaattga aggtaaaaat gttccagatt
     4021 ttcgtgctgg tgatacttta aagcttgcaa ttcgcatcaa agaaggggat aaaacaagaa
     4081 tccaaaattt tgagggtatt tgtattgcta gaagaggtaa tggagtaagt gaaactttta
     4141 tcgtgcgtaa aatgggcgct aataatgttg gcgttgagag aattttccct atttatagtg
     4201 aaagtttaga aagtattact gttttgcgtc gtggtcgtgt acgccgtgca agattattct
     4261 acttaagaga tagacgcggt aaagcagcgc gtattaaaga gcttaaaaaa taatttataa
     4321 ttatttttta ttataagcct aacaattaaa taattataat taatttataa tttttattat
     4381 ttgattttaa ttattaataa tactcttgta taatattcct tgtaaatatt atacaaggag
     4441 agaaaatgtt ttctattaaa aaaactttat taatactagc aagcgtgcca atgtttttga
     4501 gtgctactga atatcaatta agtactcatg tcttggatat tacttctgga caacctgctc
     4561 ctaaagtaaa agttgagctt tataagttgg aagcaaatca acagtggaaa aaagtaagtg
     4621 aagaatttac cgaagaaaat ggtagaatag gagatttatt accatatgaa aaagctgaaa
     4681 atagggcttt tggaatttat aagcttaaat ttttcacaaa agactattac acatcacaca
     4741 aaataaatac tttttatcct tttgtagagg taagttttga gctttctaaa gatcaaaaac
     4801 attatcatgt tccaataacc ctttctcctt ttggttattc aacttataga ggaagctgat
     4861 aaataaaacg aaagaaaaaa ccatgtggac taagaattct tggaaaaact atcctataaa
     4921 acagcaacct atctatccag atcaagagga aatgaataga gttttagcaa gacttgagaa
     4981 gcttcctcct ttggtttttg ctggagaagt gagaaatctt caaaagtctt tagcaagagt
     5041 ttgtaaaaaa gaagcttttt tacttcaagg tggagattgt gctgaaagct ttgaaaattt
     5101 tggcgctgta aatatccgtg atatgtttaa aattttactt caaatggcta tagtgcttac
     5161 atttgccggt ggatgtcctg ttgtaaaaat tggtcgtatt gcagggcagt ttgctaagcc
     5221 aagaagtagt gattttgaag agttaaatgg tataagtctt cctagttatc gtggtgatat
     5281 tattaatggt tttgaattta gcgaacaagc acgcattcct gatccgcata gaatgcttga
     5341 agcttattat caaagtgcaa caacgctaaa tttgttacgt ggatttgcta agggtggttt
     5401 agcagatttg catgaagtac atcgttggaa tttgggtttt ttaaaaaaga gtgaactcca
     5461 taagcaatat actgatatca gtgaaaaaat ttcacaagct ttagctttta tggaagcttg
     5521 tgggattaat acaagtaata ctccaagcct aagagaagtt agtgtttata cttcacatga
     5581 agctttactt ttgccttatg aagaagcttt aactagagtg gatagtttaa gtggagaaat
     5641 ttacgattgt tcagctcaca tgctttggat aggtgaaaga acaagagcgc ttgatgaagc
     5701 tcatgtacat tttttaagag gagtaaaaaa tcctttaggg gttaaaatag gacctagtgc
     5761 aagtgcagat gatatcatag ctttagcaaa tgttttaaat ccaaataatg aagaaggaag
     5821 attaaatatt attatccgca tgggtgcaga taaaattatc aataatttgc caaaaatttt
     5881 ctctaaactt aaaagtgaag gtttaaattt agtatatagc atagatccta tgcatggaaa
     5941 tacagtaaaa gcaggtaatt ttaaaacacg tgagtttgat aaaatcatgc aagaagtgag
     6001 atcttttttt gagattgcaa taagcgaagg agtttatcca ggtggggtgc atcttgaaat
     6061 gactgggaaa gatgtaacag aatgtacagg tggtgcaagc aatgttactg ctcaaagctt
     6121 ggaagatcgt tatgagactc aatgcgatcc aagacttaat gcggatcaag cattagaact
     6181 tgctttttta atcgcagatt tggtaaaaaa ggctagaaaa tgaaacttta tggtattaaa
     6241 aattgcaatt ctgtaaaaaa agctatggat gctttaacac aaaaaggcat tgtgtttgat
     6301 tttatggata ttaaaaagat taatcaagat attttataca catggttaaa acaaaaatct
     6361 tttgaagaac ttatcaatac tgctggatta acttctaaaa aacttggttt aaacaaagaa
     6421 aaagttaaaa atttaaatga aaaagaactt gaaaaaattg tattagaaaa tccaagttgt
     6481 attaagcgtc ctattatcga gtatgagcaa aacatatata ttggtaagga atatgagaaa
     6541 atgttatgat agagtgtttg attacactct attttttatt aattgattaa tttcattttg
     6601 atatggaaat ctttcgcttt cgcaattaat aagttgtgtt ttagagaaga taacttttcc
     6661 gtctacttca acgataaaat cacctctgcc gccaatttca aattctactt caacatcttt
     6721 gaaatcgctt tgtagttctt ctgcaaccct tgcagcttgt gggcgataat ttcaaagatt
     6781 gcaataagca atttttactt tcatcatttc atcctttgaa aagttcattt tattaagatt
     6841 aaaatcttag attttattat agtttatttt ggctgaattt ttgccttttt atcaaattta
     6901 agttgaaatt tagggccaat ttctttcaaa ttcagcgaga aaaatttata atttttatca
     6961 aaattaaaat aagccttaaa aaactaaagg aagaaaatga gtcaatttac acatttgcat
     7021 ttacatacag aatattcttt gcttgatgga gccaataagc ttaaagaatt agctttgact
     7081 ttaaaagagc agggtgctac aagtgtggct atgacagatc atggaaatat gtttggggca
     7141 attgattttt atcaaacaat gaaagcacaa ggtttaaaac ctatcattgg tatggaagcg
     7201 tatttacata atcacgatga attagatgat aaaagttctc gtcagcgttt tcacctttgt
     7261 ttgtatgcaa aaaatgagat cggatatcaa aatttaatgt atttaagttc tcaaagttat
     7321 attaaaggtt tgtattatta tccgcgtatc aataaaaagc ttttggaaga tcatagcgaa
     7381 ggtcttattt gctcttctgc ttgcttgcaa ggtgaagtaa attggcactt aaatacttat
     7441 agtgaaagaa atgtgcgttt tggtgcaaaa ggctatgaag cagcaaaaga agcggcgcta
     7501 tggtataaaa aagtttttaa agatgatttt tattttgaaa tcatgcgtca tggtataggc
     7561 gaccaaagaa tgatagatga tgatattatc agactttcta aagaattaaa tataaaaatt
     7621 attgctacaa atgatacgca ttatactttc aaagaaagag cggctgccca tgaggttttt
     7681 atgtgtatag ctatggggaa aaaacttaat gatcctgata gaatgcgtca tagtgtgcat
     7741 gaattttatg ttaaaagccc tgagcaaatg agtgagcttt ttgcagatat tccagaagct
     7801 atagaaaata cacaagaaat cgcacaaaaa tgtaatttag atcttaatct tggcaatccc
     7861 actccaccga attttaaatt tacaagagaa tatgctaaag atcataatat tatcttacct
     7921 gaagaaacaa aagaatttag ctttgataat gatgacatag tttttgaaga actttgcaaa
     7981 aagggacttg aagagagatt aaaatttatc gatgaaagca agcatgaaga atacaaacaa
     8041 agacttgaag tagaaattaa catcattaaa aatatgaaat tttcaggtta tatgcttatt
     8101 gttcatgatt ttattaaagt ggctaaagat aaaggtattc cagtaggccc tggaagagga
     8161 tcagctgcag gaagtttggt ttcttattgt ttaaggatta cggatttaga tcctattcct
     8221 tatagtctac tttttgagcg ttttttaaat cctgagcgtg tgagcatgcc tgatattgat
     8281 gtggattttt gtcaagacag acgtgctgaa gtgattgact atgtgattga taaatatgga
     8341 gcagataaag ttgcacaggt gattaccttt ggtaaacttt tggctaaagg ggtgattcgt
     8401 gatgtggcta gagtttgtga tatgagtatt caagatgctg atgagcttgc taaacttgtg
     8461 cctgaagagc ttaaaatcac tcttgatgct gcttatgaaa aagaacctaa aatcaaagaa
     8521 tttatcgatc gtcatcctaa aggtcctgaa gtttgggagt atgcaagagc tttagaagga
     8581 ttaaatcgca atgcgggtat gcatgcagca ggtgttgtaa tttctaatga aagtttatgg
     8641 aagaaaactc cgctttttag acaaagtaaa aatgatgaaa gacatttggt aacgcagtat
     8701 tctaaagatc atttagaaga tgtggatttg ataaaatttg actttttagg tcttaaaacc
     8761 ttaacagtaa tcaataatgc gatcaagctt attaaaaagc gttacaataa agacattatt
     8821 tgggaaacta tagatgtaaa tgatagcaaa gtttataaaa ccatacaaag tggaaatact
     8881 ttgggaattt ttcaaatcga atcaggcggt atgcaaagtt taaatgcacg cttaaaacca
     8941 gagcgttttg aagatatcat tgcggttctt gcgctttatc gtccaggccc tatggaatca
     9001 ggaatgcttg atgattttat cgacagaaag catggtttaa aaagtataga atatcctttt
     9061 gacagtttag aaaaggtttt agaacctact tatggggtta ttgtttatca agaacaggtt
     9121 atgcaaattg ttcaaattat aggtggcttt tctttaggag gtgctgatgt agtgcgtcgt
     9181 gctatgggta aaaaagatcc tgagaagatg aaaaagctta aaactgattt tgcagatgga
     9241 gcagaaaaac aaggatatga tagagcaaaa gctgaggatt tatgggagct tatcgtaaaa
     9301 tttgcaggat atggttttaa taaatctcac tctgcggctt atgcgttgat tacttttcaa
     9361 acagcttatt taaaaactta ttatcctagt gaatttatgg cagcactttt aacaagcgaa
     9421 gaaaacaatg tggataaaat tgctgtttat attgatgaga tgaaaaaaat gaatattaaa
     9481 cttttacctc catcgattaa caaagcgatc cgtgaattta gtgctttaga gcaagatggc
     9541 aaggatgcta ttatatacgg acttggggct ataaaaagtg tgggtattcc tgcagttgaa
     9601 aatttacttg aagcaagaca agatggagaa tttaaggata ttaatgattt cttaggtaag
     9661 atagatccta ccaaaataaa ccgtagaaca ttagaaagtc ttattaaggc aggggctttt
     9721 gatgagtttg gttttactag aaaagctttg tttgataata tggaaaatct tagcgaagca
     9781 tcgcgtaaaa tggctgaagt aagaaaaaat gctgcaagtt ctctttttgg tgaagaggaa
     9841 ttaacttcag gtgttcaagt aaattttact cccaaaaatg aagaatttga agtgatggaa
     9901 aaattaggat atgaaaaaga aattttagga atttatgttt caggccatcc tttagatcga
     9961 ttttatgaac aaattaatgc catagattat gttaaaagtt tagattttga aagtttaaaa
    10021 aacaatggag aaattttaag tataggtaaa attgaagatt tcaaatccat gatgagtaaa
    10081 aataataagc gttatggtag aattgaaatt ttggattatt attcttcgtt tgatgctact
    10141 gtatttgaaa gcaatgtgga agaaatagaa aacatcatca aagatgaaaa tttaaaaaat
    10201 aatgcctatg gttttgtatt gggatttaaa gctgagggag gggagaagcc tagctttttt
    10261 ttaaaagcaa ttaaagattt gcaaagtctt gaagatggcg agattaaagc tataaaaaaa
    10321 tttggagcaa aaaaagattt taaaaataaa gaagaaaatc attttaccgc agaacctaag
    10381 gaatttgaaa aaaatatcat agagctagat ttgacaagat tgaatagaga attaatctat
    10441 gaaattcatg aaattgctag aaatgcacat aatcctaatg aaaaaaataa taaaaaactt
    10501 gttttaaaag ttattagtgc gggatcttgc ttgctttatc atacagattt tattatctct
    10561 gatagtatag tagaggaaat ttctaataaa tatgcttaag taagattgtt cttacttaag
    10621 atttttaaat aaaatgcttc cgagtcttac caagttggat ccgcatttta tagcaatttc
    10681 aaaatcatta ctcatcccca tagagcaaat cttagcccca tgtttttgaa gaatttcata
    10741 aattttaaat gtagtttcaa agctttttat aatactttct ttatcttggc tgtgtgagcc
    10801 tatactcatt acgccacaaa gatttagatt agagcactct tcttgtattt gtaaatattc
    10861 ttctacagct tgatttggat ctagaccgct tttgctattt tcatttgcac tattgatttc
    10921 taataaagta tttaatttat aatcaagtct tttgtccata gctttagcta ttttaatacc
    10981 attgcaagag tgccataata taggtttttg tttgattaag agattgattt tgttgctttg
    11041 tagcgttcct ataaaatgcc actttatgtc tagttttttt tcatcaagat tttctttttt
    11101 ttgtgctaga gcttggactt gattttctcc aaattctact ataccttgat caaaaagctt
    11161 ttcaattata cttgcatcga catacttgct tgcggctaca agacgaacgt ttttggtttt
    11221 ttctaaaatt tgctctaaag tcattttgat aaagaaataa gccctattta gggcttatat
    11281 tattgtaata aattagcaat tttgctttga agctgcatgt tggattgcgc agcaacaaaa
    11341 gcagcagcat tttcttttag ataattggca ttaaaatcat taacattttt tgccatatca
    11401 ttatttagta aattattttc agctgctttt gagttgatgc tattttgaac acttgcatta
    11461 atatttgatg taatggcatt gatacctgaa cctatttcac ttcttaaact tccaagttga
    11521 tccataaaat ttgtaatact atcttgatta tctatgctta atccacctgt tgctaatgga
    11581 tttaaatttg tagtttcagt tccgctacct actacaaaat tcatagtttg aaagacattt
    11641 tttccattat aagttgcatt attaaaagaa ttattgatgg attcttgtat gcgtgttgct
    11701 tctgttctta gcattccttt ttgagaatca ttaagtgcag cattgttcat ttttactgaa
    11761 agttcattaa gtctatctgc gctttgagag atattggtaa ggctagcatc tgcaatttgt
    11821 aaaaccccta tagcatcata agcatttgcg acaccttgat ctatagtgct tgattgagat
    11881 cttaaagaat cagcaatagc taaattagca ctatcaactc cacttattgc gcgaacagct
    11941 gcaatatttt ctaaagcttt atcgctagct ttttgtgcat tatttaaata ataattttgt
    12001 tgcatcatag ttgcatcaga gatcatcatg gcctactcct tctcttttgg atttatttag
    12061 tattttatca tttttttgct attttaaagc ttaagaaata taaaaaaact tgcattatta
    12121 agatgatttt aatcaccact tcacttgcat tatggatact gataaattct tgagtttttg
    12181 tagcgttttc gcctaagttt tggagttcaa ttatggtatt agtaaaataa aaaacaaata
    12241 ttaagcttaa aatcaaaata agcaaactca gcataaattt tgaaaatttt atttgaaatt
    12301 tcatttcatc ttttataaga gaataaattt catataaaaa attaaccact gaaacaaaaa
    12361 tcagcaaata tcccatttta ataaaaattt gcgtcatcat taagccactg tgaaaatggc
    12421 tcaacactcc ttctcctata agattttgag gaaaaaaaat tgttggtgca acaactattc
    12481 ctagtatgag ttcaacccct atgatggagg caagtaaaaa taaattaaca gctttcaaga
    12541 gtttctcctt ttatttttta tcataacgca tatttgttaa tttagctata aaagcacgat
    12601 tataatcttg ttcatctttg aagaaatcaa caatgaaatt attttgatat aaaatttttt
    12661 ccaaaatttc tttttgatca tagccaaatt cgcaagctaa aaatttaact tttttatcaa
    12721 gggaaaaatg tatgatttct tctagaattt catatccttt ttctccgcca aataaagcct
    12781 ctttgggttc tttttgcacc caaatatcta taggatatga atttttaata tagggcggat
    12841 ttgaaaaaat aaaatcataa ttttctttaa tttgcttaaa attacaaagt ttaaagtcaa
    12901 tcaagtgatc gactttgtgt aatttggcat tctctaaagc taattctaag gctttgggat
    12961 tgatatcgca ggctgtgatt tttaacccaa gttctttggc taaaacaatg cttaaaattc
    13021 cgcttccaaa tcctatttct aaaatcccat taaaagtatt ttttttgcat aaatttaaaa
    13081 tttgaaaaag taaaatttca ctatcgtagc gagggattag aacgcctttt tttatcttaa
    13141 attctaatcc ccaaaaatct actttttcaa atatatattc aaaaggttct ccagatttaa
    13201 aacgccttat aagctcaaaa taaggttcat gatctatttg tatatcttgg tttaaaaata
    13261 accaagcttt atcttttttt agatattcgc aaagtataaa tactgcttca ttttcataac
    13321 cttttaagct agatttagct tccataagag cattttttat agtcaagaaa gagccttgat
    13381 tctatcacta atacttggat ggctgagata aaaaaatgta tatattttac ttgtttttat
    13441 aaaagcttta ttttctcttg ctagagctat caatgcattt ttcatatctt ctttgcttgt
    13501 aactttagct ccgtgttgat cggctgcaaa ttcatttttt ctacttaagg cattaagcat
    13561 aggagagatt aaaaagctaa aaatatttgc aaagataaat aaaagagcga acacaccgcc
    13621 atttactcct tctagatgac tttctaagta aacaaattca ggtaaatttg caaaaacaaa
    13681 aaaaagtaaa aacatagtta tagcaccgtt aaataaagct ttgataatat ctttatgaac
    13741 aaaatgtcca agctcgtgtc ctaaaacagc taaaagttct ctttcattta aagcttttaa
    13801 taatgtatca aaaagaacca ctcttttgct tttaaaaagt ccaccaaaat aagcatttaa
    13861 acgcttatct cttttgcttg catcaataac ataaacccca tttgcactga acccacattg
    13921 tttcattaaa gagctgattt ttttcagcaa attttcatcg tttagttttt ccattttatt
    13981 aaaaataggt gctatcaagg tagggtaaat gagatttata attactataa tacaaaaggc
    14041 aaaaataaag gccgcaatcc accaaaaagt tccaaaaaaa tcatagcaaa aaagcaaagc
    14101 ataaaggatt aaaaatccaa atattaaagt taaaataaga ctttttacag tgtctttgat
    14161 aaaaagtttt gcagtcatat ttgaaaaacc atgggcttta tctttgataa aactttcata
    14221 aatatttaaa ggtagattta aaatgcttgt gattattaaa aaagataata aaaataaagt
    14281 attttcaaaa cgagtgttat ttgagataag taattcttta agatataaaa atccaaaacc
    14341 tatccatgca acattgatga ttaaattata aaaattggaa aatagtttaa atttttcatt
    14401 ttcgatggca atgtctgctg cattttgata gtctttttcg cttaaaattt gagcttgttt
    14461 gtctttttct ttttctaaga aacgaatttg agtataggaa atccaagata aaagtgctgt
    14521 gtaaagacat aaaattgcaa ttaaagtcat tatttttcct tgattggttt tttgcgaatt
    14581 ctagcttaaa ataatgaaat aaagttaata gcttaaaatc taaaataata ttcttttcaa
    14641 ctaagttgat gtatatttat aaaaaaggat taaagaatgt tttttaagaa aaagatttca
    14701 caaaagcaaa aagaaaagcc taaaattcca atcaatgata tgattttaga tgacagactt
    14761 tgtaagttta aaaataaagt gcaaaagata agcaaagatg aagcttcggc aagtctgctt
    14821 gctagacaat taagcagact tatcagagct aataaatttt aattttgaca ttttttctta
    14881 gggcgaaaaa ccttaataac ttcatcattt gcttctatat aagcaccttc tattaaatca
    14941 atacaataag gtatagctgg aaaaacaggc tctagacatt cttttatagc tttaggattt
    15001 cctggtaaat taataataaa agatttattg cgaattcctg cgctctgtct tgaaagtatg
    15061 gctgttggga catattttaa actttctaag cgcataagct ctccaaaacc tggcatcatt
    15121 ttatcacaca cggcttccgt ggcttctggg gttacatcac gaagcgctgg acctgtacct
    15181 ccgcttgtaa caatcaaatc gcattttttt tcatctgcta gataaagtaa ttttttgatg
    15241 atcaaatcat aatcatcagg gattaattct ttatgataaa taatatcatt ttttatatat
    15301 gaatttaaca ctctttcaat ttcagcagta gctttatctt cgtatatgcc actacttgct
    15361 ctatcgctta gggttaaaat tcctatgttt atcgtatcca ttgttcctcc ttaataaatt
    15421 tttataacca tccttttttc ttgaaaacaa ccaaaggtaa aatgatagaa attaccatca
    15481 cgccaagcac tatgggataa gcatagtgaa gttcaagttc tggcatgaat ttaaaattca
    15541 taccataaac agttcctatt aaagtaggag gcatcatagc aacagttgca acggtaaaaa
    15601 ttttaatgat tttgttttgt tctatgttga tttggctggc taaaatagtt tgaatattgt
    15661 ctaagatatt aagttgtgaa acactaaatt caaccaaaga atttaagtct tttaaaacta
    15721 tagtgagatt ttgttttata tctttatcga ttttatcgct ttttagtaaa gaagtcatag
    15781 cgcgacgttt atcaaataaa gaatctctta cacgcatatt aagctcttgt aagcttgaaa
    15841 tatcctttag catttcatca taactatatt catctttttt ttctaaaaca cttgttctta
    15901 agcgtcttgc ttctttatct atccattcta gtaaatccgc atctttttca acgcgcactt
    15961 caaacatttt atcaataata tcaaaaccat cttcaaaatt cttcggacta gctaaaattc
    16021 ttgcttgaat ttcttcaaaa gtactaaatt cgttatatct tatagtaaat aagatatttt
    16081 tagctgtagc aaaagtaaca atttctgtgc gaagcttgat taaattccta tcttcttcat
    16141 cgcttttaag atctcttact aaaaaatgag cattgatggt tattgtcgca ttgtcttccc
    16201 aatattttgc gctaagttct atttcttctc tttcttcttt tgtaggaaac tcaagattaa
    16261 attcacttga tataaaagca atttctgctg cacttggatg aagtaaatca atccataaaa
    16321 tattttgtgg tagttcttga ctatcgagat taaagttgat tctttgaact aaagcatttt
    16381 gagttttaat ataaacatag agcatagtta ttccttattt ttaactttaa aattatacct
    16441 tgattagttt aaaaatcaat tttttaattt ttgcaaatca aaaaccaaat tttccaccta
    16501 aagctcttaa actaagcttt agtttaagat atctttaatc agtttttgca aatttctttt
    16561 tgtttcttct tgttctttta tgataaaaca tttcgctttt ggccaaaaat aacttttagg
    16621 attttcaaat tttccccaac gccaatcaaa tctaggatgt aaaagaacta tagtaggaat
    16681 atccatagct aagcttaaat gcgctatagc actatcaata ctaagcatac agtcaatatc
    16741 atataaataa tttagagtat cattccaatt ttttataagc ttgcttctat cttctattac
    16801 cttaggtaat tcttctttta attgcatttg aaaagaaatg atttcataat ctaagtcttt
    16861 taatatatca aataaaaatt caaattttac atttcttaat aaatcagaat tttcagcatt
    16921 aggagtagca taaaaaatac caagtttttt tcttttatta tgcggttttt tctgtggcaa
    16981 tataggtgtt tttaatcgtg aaatctcatc aagcttaata tcaataaaaa aaggcaaaga
    17041 acaaatagga atagcataat caaaatttgt aggtagattt tttaaaacct ttacattttt
    17101 aaaaatatca tcattttgat ttaaaaattt gatttgattt ttaaacattt catacatggc
    17161 actttgagga gcaaataaaa cctttgaagc gattttgcaa agtttttcta agcatcttgc
    17221 atacattata gtatcgccaa agccttgctc gcaaaatact aaaacttctt tatttttaaa
    17281 agcatcaacg ccaaatttat taaaagcttt taagctttca ttataatgat aagtagaaaa
    17341 agtttcatta tgagcataaa ataatctgct ttcataatat ttcttaccct cttcaaaatt
    17401 atcatccact cccatacgca tcaaaagata agccaaatca aattgatagg ttgcatgaga
    17461 atccaaacta agacattttt tataagcata ataagcttct tgatagtttg aattaaattc
    17521 taagacctta gcatagtttt gccaaaactg tgcatggtgt tgattggctt cttgtagtga
    17581 ttgaaaaagt tctaaagaat cagatattct aaaaagctta aaaagcaagt atgctttttg
    17641 gggtaaaatt tgatgagtta aaaaatcttc tattttagaa atagtaagat tttctttggt
    17701 tttactatga agcctatctt cgagtttaat taaattaaga ttggtttgtt cagcaatgat
    17761 tcctttttgt agtttatcaa tcaaatcttg cataaaatga cacaagtgct catgtgcatt
    17821 taatgccttg gtaaaatcat gtttaaaata aatttctgca taatttttcc atagattaag
    17881 attatacata tctttagaaa gtaattcttt gaaaatttgt tcagattctt ctagtttatt
    17941 actcagttta taaataaaag ccaattctaa cttaagttca tcttctaaat catctttgcg
    18001 agttaaaagt gtttgtaata aattcaaggc ttcatcaagt cttaaatttt caatatagct
    18061 tttagcaagc ataagaccat taaaacttgt aggatttaaa gaaaaaagct cttgagcata
    18121 atataaagct ttttgaaaaa gagaaagttt ataagaagaa agcatagcaa attctaaagc
    18181 aaattttgga ctttctttta aaaattgctc actcaagttt aaacattttt cataattagc
    18241 attaaaataa taataatgaa ttttatcaaa catatttttc cttga
//
LOCUS       DAZBIH010000023        18118 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.023, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000023 DAZBIH010000000
VERSION     DAZBIH010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 18118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18118
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.023"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            77..1411
                     /gene="tig"
                     /locus_tag="ACHFOB_000655"
     CDS             77..1411
                     /gene="tig"
                     /locus_tag="ACHFOB_000655"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005854 - nascent polypeptide-associated
                     complex [Evidence IEA];
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_function: GO:0051082 - unfolded protein binding
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0051083 - 'de novo' cotranslational protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HFN5799470.1"
                     /translation="MEVKAKQLDSVNATASVKIPSGMIKSEVENLAKKASKSVKMDGF
                     RPGKVPVSAVLKRYERELTQDAEQNLFKSAVNSALQELKKESKELVGEPYFEKFDRKD
                     GEIIAELILSFKPEIKLDGYEKLIPEYQTPKVNKKEIDEKKDELLKRFSTPEAIKTKR
                     ALKEGDFAKFDFEGFVDDKAFEGGKAENYVLEIGSKQFIPGFEDGMVGMKIGEEKDIK
                     VTFPKEYGAAHLADKDAVFKVKLHEIQELKIPELDDEMLKKLLPGEEKASVEVLDEKL
                     KEQIKNEKLFKLVNDELKGKFADALIEKYNFDLPKGIVEQETDMQMRAAFNTFSEKEI
                     EELKASKEKYQEKRDSFKEEAQKSVKLTFIIDELAKLRKIEVNDQELIQAIYFEAYRY
                     GMNPKEHLENYKKQGALPAVKMALIEEKLFNDIFMPKTEKSEKASKKEKEDK"
     gene            1411..1995
                     /gene="clpP"
                     /locus_tag="ACHFOB_000656"
     CDS             1411..1995
                     /gene="clpP"
                     /locus_tag="ACHFOB_000656"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009368 - endopeptidase Clp complex
                     [Evidence IEA];
                     GO_function: GO:0004176 - ATP-dependent peptidase activity
                     [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HFN5799471.1"
                     /translation="MFIPYVIEKSSRGERSYDIYSRLLKDRIIMLSGEIHDELAASIV
                     AQLLFLEAEDPTKDIYLYINSPGGVITSGFSIYDTMNYIKPDVCTICIGQAASMGAFL
                     LSCGAEGKRFALPNSRIMIHQPLGGARGQATDIEIQAKEILRLKTILNDILAKNTKQK
                     VAKIAKDTERDFFMSTQEAKEYGLIDKVLEKSFK"
     gene            2031..2558
                     /gene="def"
                     /locus_tag="ACHFOB_000657"
     CDS             2031..2558
                     /gene="def"
                     /locus_tag="ACHFOB_000657"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042586 - peptide deformylase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HFN5799472.1"
                     /translation="MVRKIITYPNPRLFLNSEIVNKFDTELHTLLDDMYETMIASNGV
                     GLAAIQVDIPLRVLLVNIFNENDEQKKEDLLEIINPEIIPLDEEMITCTEGCLSVPDF
                     FEEVKRYNHILLKYQDRFGEFKELEAKGFLAVAIQHENDHLNGHLFIEKISFAKRQKF
                     DKEFKKKKKNHKKEK"
     gene            2555..4060
                     /locus_tag="ACHFOB_000658"
     CDS             2555..4060
                     /locus_tag="ACHFOB_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YifB family Mg chelatase-like AAA ATPase"
                     /protein_id="HFN5799473.1"
                     /translation="MKKLKCISFHEGLDIIEVESTFTRGLPNLSIVGLASVAIKESVE
                     RIKATLLSCDFAFPAKKITINLSPSGIPKKGSHFDLAIALLILLQNEELDDFFVVGEL
                     GLDGSIKSTNELFSLLLFLSAKIKKAKIVVPKSIAQKASMIPNLEVYGLENLNEAIEF
                     FKEKNYENFRFSHNHPLFASPLQIENEIFLQNMDFKLDFKDIKGQEKAKRACMIAALG
                     MHNILFEGSPGSGKSMCAKRLVYIMPPQSLSEILMQNAYMSLDSKDCEFTKIRAFRHP
                     HHTSTRASIFGGGTKNARIGEVALANGGVLFFDEFPHFNKQIIESLREPLEDHKIHIS
                     RVNSKITYETKFSFIAAQNPCPCGNLFSKNLSCVCSENEIKKYKNHISAPIMDRIDLY
                     VAMDEISKDDKTSISSKEMSEKILQAFIFGKKRGQKEFNGKLKDEDLSRFCVLEKDAK
                     DTLDLAISRYNLSLRSLNKILKVSRSIADLEQSLNISKTHILEALSFRARN"
     gene            4062..4760
                     /locus_tag="ACHFOB_000659"
     CDS             4062..4760
                     /locus_tag="ACHFOB_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004540 - RNA nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HFN5799474.1"
                     /translation="MENKSIAIFIDAENIPAKYAKSIFDIASDYGEVIIKRIYGDWTQ
                     KNIQGWREQIAEYSLIAMQQFNFAANKNSSDMYLITEIMSIFYEKNIDIFVIVSSDSD
                     YTSLIQKLRENKKQVIGMGLEKSIKSYVNAFSEFFYLDKDESKKEDILSKDYLRALIN
                     ITEQLIDEKGRAEYAQIRTNMNRKYSDFHPQNYGFKNFRALIQKFLPKMKKFEEEREK
                     NIYFLVKKDYESYY"
     gene            4744..6114
                     /locus_tag="ACHFOB_000660"
     CDS             4744..6114
                     /locus_tag="ACHFOB_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional ADP-dependent NAD(P)H-hydrate
                     dehydratase/NAD(P)H-hydrate epimerase"
                     /protein_id="HFN5799475.1"
                     /translation="MKAIIDNIKILEQNAINKGLDELILMENAGLNLAKLIKKEAKKI
                     RIQRKIRKVKTLFLLGGGNNASDGLVALRNLKHAKAYKIGFKENTLFKKQEQILQNYA
                     FKFCKKEPNFKKFHIIVDCILGTGSNRCLDEKTSLIIQKVNQSKALKIACDIPTNLGF
                     YPCFKADITFCMGALKEILLEDFAKEFVGRIKIANLGISSKKFYPNSQAFLLEKKDLK
                     TIDRKINANKGNFGHIYIVANASAGTLAGLGALNFGAGLVSLVAQKSFSPLLMLKEKI
                     ENNASAIALGMGLENLDFLKDEILQNTPLILDANCFLSEALLWYLNRKDIVITPHPKE
                     FIKLYKMCFDENLDIETLQKNRFFYARKFSQNYDCVLVLKGANPIIAQKEKLFVVNLG
                     NQALAKGGSGDVLSGMIAAHLGFGFSALEAAKNATLAHGLVAKKYKFNKNSFDALKLI
                     KGLKCL"
     gene            6105..6671
                     /gene="purN"
                     /locus_tag="ACHFOB_000661"
     CDS             6105..6671
                     /gene="purN"
                     /locus_tag="ACHFOB_000661"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HFN5799476.1"
                     /translation="MLVKLAVLFSGNGGNLENILEKLHKKTIGENTYEVVLCLCNKKD
                     AFGIQRAKKFGLDTVIVDHKAYNTREEFDTILVQKIKESGANLTVLAGFMRILSPVFT
                     KNIKAINLHPSLLPLFKGAHAIKESYESDMKVAGVSVHWVSEELDGGMIIAQKAFEKR
                     NLSFEEFEEKIHSLEHEILPLSVIEIFS"
     gene            6743..7462
                     /locus_tag="ACHFOB_000662"
     CDS             6743..7462
                     /locus_tag="ACHFOB_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HFN5799477.1"
                     /translation="MFEWIFSIDAWITLATLSALEIVLGIDNIIFLAILVSKLPPEHR
                     DKGRILGLAFAMITRILLLLSLFWVMKLVTPLFSVLGNEISGRDLVLLLGGLFLIVKS
                     IKEIKEQISHQEESQSHFKASNKLWIVVAEIAVIDIVFSLDSVITAVGIAQDVTIMII
                     AVIIAVAVMLFASKPIADFVEKYPSIKILALAFLVLIGVVLVAESFDIHIDKAYIYTA
                     MAFALVVQILNILDQRKEKNG"
     gene            7455..7664
                     /locus_tag="ACHFOB_000663"
     CDS             7455..7664
                     /locus_tag="ACHFOB_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HFN5799478.1"
                     /translation="MAKDANGTELNAGDSVSVIKDLKVKGASTTLKRGTTIKNIKLTS
                     KEGEIEARVDKFGVIVLKTEFLKKI"
     gene            7674..8858
                     /locus_tag="ACHFOB_000664"
     CDS             7674..8858
                     /locus_tag="ACHFOB_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN5799479.1"
                     /translation="MRILLVLRGNYYAGQEEFIKNNKLQNYTLDLNALRLLSGSVKNI
                     VSEYKILNVKNDEDLSKILLKLLEMRMQKGEFCIINAYNETLKIYKDLAKQYRYKMYV
                     IVFDSSLKQCQEKNLLEAKKNGYIIPYALLEKTQDLLKKNPKKYPILDSSDWKKCLYQ
                     MPNLSKYKKIHHIGDLQGCYSVLKEYIKTIKEDEFYIFLGDYINRGIENGKVIKFLLK
                     ICEKENVCLLEGNHERHLIKWANGELSNSKEFNENTLKDFRKEKLTPRDARKLYPHLK
                     ECLYYKFQNKFIFCSHGGVNFIPSKPEKISFIPSHDFIYGVGGYEDSQKVANQFCNFT
                     SDNLYQIFGHRNKEKLPMKIAKRVFLCEGKIDGGGYLRVVTLDKKGFECIEIKNQIYK
                     KK"
     gene            complement(8871..10229)
                     /locus_tag="ACHFOB_000665"
     CDS             complement(8871..10229)
                     /locus_tag="ACHFOB_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin family protein"
                     /protein_id="HFN5799480.1"
                     /translation="MDPSQVLDLNQTSTASFDAGYSILMVVVALALVFLNGFFVLSEF
                     SIVKVRRSKLEEMVKEKKAGAKKALEVTSRLDTYLSACQLGITLSSLALGWIGEPAIA
                     KMLEIPLINLGFSTVIIHTIAFIIAFSIITLLHVVLGELVPKSIAIAVADKAVLFIAR
                     PLHWFWILFLPCIKIFDFLAAISLKLFGIKPAKESELTHSEEEIKIIASESQKGGVLD
                     EFETEIIRNAVDFSDTVAKEIMTPRKDMICLNKQKSYEENMQIICEHKHTRFPYIDGS
                     KDTILGMIHIRDIIQNELSHKSQNLDTFVKPLILVPENISISKVLVMMNKERSHTALV
                     VDEYGGTAGILTMEDIMEEIIGEIKSEHEEDSYKKLAENIYEFQGRCDIETVEEMLVI
                     NYDEDLEQVTIGGYVFNLLGRLPMVGDRIEDELCYYEVKKMDGNSIERVKVVKKTNKD
                     EE"
     gene            complement(10328..11527)
                     /locus_tag="ACHFOB_000666"
     CDS             complement(10328..11527)
                     /locus_tag="ACHFOB_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002893872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative transporter"
                     /protein_id="HFN5799481.1"
                     /translation="MFSSFFASKKWALWAYLGLFLLLFFLYIQTSLNVAINSWYSDFY
                     NVLQKPKIELLDSNSTQKIEENLENNTTLIQEANQRAEQNFQKANFINKGALYYYQNL
                     LEYFFNSRAMIEKPNYSANDFYALILVFLAIAIPYVLIATINIYFASVYAFKWREAMT
                     FSYLKFWKNKDDNIEGSSQRIQEDTYNFSKIVESLGLSFIKALMTLVAFIPILWSLSD
                     VVSKALFANLSENSSFYFLKNIDGLLVYIALLISLGGLVVSWFVGIKLPGLEYNNQKA
                     EAAFRKELVYAEDNRKEYAKNETMIELFTGLKFNYKRLFLHYGYFNIWLILFEQMIVI
                     VPFLIMAPGLFAGAIGLGIVMQINNAFDQVRSSFSVFITNWTTITQLRSIYKRLKEFE
                     KNISYKS"
     gene            11720..11836
                     /locus_tag="ACHFOB_000667"
     CDS             11720..11836
                     /locus_tag="ACHFOB_000667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799482.1"
                     /translation="MSMKKIILFLLCVGFAFACSEHSHTDFKDLNKTEYNSQ"
     gene            11847..12851
                     /gene="cfbpA"
                     /locus_tag="ACHFOB_000668"
     CDS             11847..12851
                     /gene="cfbpA"
                     /locus_tag="ACHFOB_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(3+) ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN5799483.1"
                     /translation="MKKIFLMFLTAFSFLGASELNIYSARHYDADFEIIKKFEEKTGI
                     KVNHTQAKASELIKRLSLEGSNSPADIFITADISNLTEAKNLGLLSPVSSKYLEEFIP
                     AHLRDKDKEWFAITKRARIIAYNKNANIDISKMKNYEDLARAEFKGEIVMRSATAPYS
                     KTLLASIIANDGNKEAKAWAKGVLDNLATNPKGGDRDQARQVFAGEAKFAVMNTYYIG
                     LLKNSKNPKDVEVGNSLGIIFPNQDNRGTHINISGIAMTKSSKNQDAVKKFMEFMLSP
                     EIQKILTDSNYEFPIRNDVELSQTVKDFGTFKEDQIPVSKIAENIKEAVKIYDEVGFR
                     "
     gene            12851..14467
                     /gene="cfbpB"
                     /locus_tag="ACHFOB_000669"
     CDS             12851..14467
                     /gene="cfbpB"
                     /locus_tag="ACHFOB_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006826 - iron ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5799484.1"
                     /translation="MYKTLKYYKLGAILLALFLALPIFGIFAELFYILFQNFNTSNLT
                     QFSSIKENLSHFFDYLFLKFIKDTFIISMGVLCLSLILGVSSAYLIANYDFYFCKILE
                     KLLILPLAIPAYILAFVYVGIMDFQGFFHENFGFRIDFFNHYGVIFVLAISLYPYIYL
                     FAKTAFKSEAKEAYEVAKIMKYSEFRIFTRVALLSARPAIFSGALLVLMETLSDYGAS
                     AYLGVDTFSAGIFKLWYDLNDSYSSSVLSGILMLFVFLIMYVDYYYKNKHHYSFNQNL
                     ALFIKKRKLNPIKQILSCIYCFMIAFVGFILPFIWLVYWGLKDHKLFESQFYIISFQT
                     IILALVTALITTFLAYFLMFSSRIVKNHFFNLFILKISSLGYSIPAAALGISIIVLFV
                     FLDKIFHMSLLGNSLLVLVFAYVIRFLASAIYSLEGGYNKIHLNIDEASLNLRTSYFI
                     LFFKIHTPLMKHFLFLAFIIVFIDTIKELPLSRILAPFGFETLSVKAFWFASDERIYD
                     AALPSLFIVFLSLMVVVWMDKITRKDDVRN"
     gene            14451..15359
                     /gene="cfbpC"
                     /locus_tag="ACHFOB_000670"
     CDS             14451..15359
                     /gene="cfbpC"
                     /locus_tag="ACHFOB_000670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799485.1"
                     /translation="MMLEIKNLSKNFGKIQALENINLHVKEGEFLSILGGSGSGKSTL
                     LRIIAKLEQASSYDLFSCKGEVALMFQNYALFPHLNVEKNILFALYDKKDKNQILNHL
                     LKTFEIEDLRYKKIDEISGGQAQRVAFARAIARGCQLLLLDEPFSNLDQNLKQDLRRE
                     LKKMIENQGITAIMVTHDIEDAYCMSDQIAFLEKGKILAHANPKELYFKPDFKSAQIL
                     PDLNIIEEKLDLEDEFFAWIASKNYIFGYAELKIGNRFEAKILQKEFLGAFCRLKLLY
                     KNIIFFILVSSSYDLEEKISFDIINF"
     gene            15401..16606
                     /locus_tag="ACHFOB_000671"
     CDS             15401..16606
                     /locus_tag="ACHFOB_000671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="saccharopine dehydrogenase family protein"
                     /protein_id="HFN5799486.1"
                     /translation="MKNLLIIGAGGVSRVTTVKCAMNSDTFSKITLASRTKSKCDEIA
                     AFIKERLGVQIETAQIDADDSNAVVELIKKTEAQILLNVALPYQDLSLMDACIKARID
                     YVDTANYEHPDLAKFEYKEQWARNDEFKQAGILGLLGSGFDPGVTNVFCAYAQQNLFD
                     EISYIDILDCNAGDHGYAFATNFNPEINLREVSAKGRYWENGKWIETQPMEIKMEWDY
                     PEVGVKDSYLLYHEELESLVKNIKGLKRIRFFMTFGQSYLTHMKCLENVGMLGIKPVM
                     HQGKEIIPIEFLKTLLPDPASLGPRTKGYTNIGCVIRGKKDGKDKQVYIYNVCNHEEC
                     YKETGAQAVSYTTGVPAMIGTKLIAKGIWQGKGVFNMEEFDAKPFMEELNSQGLPWKI
                     IEMTPSLGE"
     gene            complement(16619..16981)
                     /locus_tag="ACHFOB_000672"
     CDS             complement(16619..16981)
                     /locus_tag="ACHFOB_000672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HFN5799487.1"
                     /translation="MDFIFANQSLYYLTKQAFKEAVQEFYELCNEGAIIFATMMSDKG
                     YSMYERGELMDNGLREVKGCPSGRLSGSSYIRFTKDIEELKEDFKPFKPLFWGDYELI
                     NLYNFEGSVEHFIYIGQK"
     gene            complement(17091..17309)
                     /locus_tag="ACHFOB_000673"
     CDS             complement(17091..17309)
                     /locus_tag="ACHFOB_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002862379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799488.1"
                     /translation="MDNSLSAYTQKYDKEGYGLQYPDGHVIRFYERILKYKLSKTSGK
                     LLDFGCGNGVHSKYFKNITGGGYRALWH"
     gene            complement(17378..18040)
                     /gene="sodB"
                     /locus_tag="ACHFOB_000674"
     CDS             complement(17378..18040)
                     /gene="sodB"
                     /locus_tag="ACHFOB_000674"
                     /EC_number="1.15.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase [Fe]"
                     /protein_id="HFN5799489.1"
                     /translation="MFELRKLPYDTNAFGDFLSAETFSYHHGKHHNTYVTNLNNLIKD
                     TEFAGKDLVSIIKTSNGGVFNNAAQVYNHDFYFDCIKPSTGCGCGGSCQSIDANLQAA
                     LEKEFGSLENFKAEFIKGATGVFGSGWFWLVYNTKNQKLEFVGTSNAATPITEDKVPL
                     LVVDVWEHAYYVDHRNARPAYLEKFYAHINWEFVAKAYEWALKEGMGSVSFYANELHP
                     VK"
BASE COUNT         6626 a         2398 c         2940 g         6154 t
ORIGIN      
        1 tttaaaattt tatgcaagta ataaggaaaa atttgctatc attgaaagca aattttattt
       61 tataaggaaa aaaactatgg aagtaaaggc aaagcaacta gattctgtta atgcgactgc
      121 tagtgtaaaa attccttcag gaatgatcaa aagtgaagta gaaaatttag caaaaaaagc
      181 ttctaaaagt gtaaaaatgg acgggtttag accaggaaaa gttcctgtaa gtgctgtact
      241 taaaagatat gaaagagaac tcactcaaga tgcagaacaa aatcttttta aatccgctgt
      301 aaatagtgct ttacaagaac ttaaaaaaga aagtaaagag cttgtaggtg agccatattt
      361 tgaaaaattt gatcgtaaag atggagaaat tattgctgag ttaatacttt cttttaaacc
      421 tgaaattaaa cttgatggtt atgaaaaact catccctgaa tatcaaaccc caaaagtaaa
      481 taaaaaagaa attgatgaga aaaaagatga acttttaaag cgtttttcta ctcctgaagc
      541 tataaaaaca aaaagagctt taaaagaagg tgattttgca aaatttgatt ttgaaggttt
      601 tgtggatgat aaagcttttg aaggtggtaa agctgaaaat tatgttttag aaattggttc
      661 taagcaattt attccaggtt ttgaagatgg tatggtagga atgaaaatag gtgaagaaaa
      721 agatatcaaa gtaactttcc ctaaagaata cggtgcggcg catttagcgg ataaagatgc
      781 agtatttaaa gtaaaactac atgagattca agagcttaaa attccagaac ttgatgatga
      841 aatgcttaaa aaacttttac caggagaaga aaaagctagt gttgaagttt tagatgaaaa
      901 attaaaagag caaatcaaaa atgaaaaact ttttaaactt gtaaatgacg aattaaaagg
      961 taaatttgca gatgctttga ttgaaaaata taattttgat ttacctaaag gcatagtaga
     1021 acaagaaact gatatgcaaa tgcgtgcggc ttttaatact tttagcgaaa aagaaattga
     1081 agagcttaaa gcaagtaaag aaaaatacca agaaaaacgt gattctttta aagaagaagc
     1141 gcaaaaaagt gtaaaactta cttttattat tgatgagctt gcaaaattgc gtaagattga
     1201 ggtaaatgat caagaattga ttcaagcgat ttattttgaa gcatatcgct atggtatgaa
     1261 tccaaaagag catttagaaa actataaaaa acaaggagct ttacctgctg tgaaaatggc
     1321 tttgattgaa gaaaaacttt ttaatgatat ttttatgcca aaaacagaaa aatcggaaaa
     1381 agcgagcaaa aaagagaaag aagataaata atgtttattc cttatgttat tgaaaaatct
     1441 agtcgtggtg aaagaagtta tgatatttat tcacgtcttt taaaagatag aattattatg
     1501 ttaagtggcg aaattcatga tgaacttgct gcttctattg tagcacaact tcttttttta
     1561 gaagctgaag atcctacaaa agatatttat ctttatatca attctccagg tggtgtaatt
     1621 acaagtggtt ttagtattta tgatactatg aactatatca aacctgatgt ttgtacgatt
     1681 tgtataggac aagctgcttc tatgggagca tttttgctta gttgtggcgc agaaggaaaa
     1741 cgctttgctt tgcctaattc acgtattatg attcatcaac ctttaggtgg agctagaggt
     1801 caagccacag atattgaaat tcaagccaaa gaaattttaa gacttaaaac catacttaat
     1861 gatattttgg caaaaaatac taagcaaaaa gttgcaaaaa tagcaaaaga tacagaaaga
     1921 gattttttca tgtcaacaca agaagctaaa gaatatgggc tgattgataa ggttttggaa
     1981 aaaagtttta aatgatttct ttggagatca tttaaaacaa aggcttttta atggttagaa
     2041 aaattatcac ttatcctaat cctagacttt ttttaaactc tgaaattgta aataaatttg
     2101 atacagaact tcacaccttg cttgatgata tgtatgaaac tatgatagca agtaatggag
     2161 taggtttagc ggctattcaa gtagatattc ctttgcgtgt tttacttgta aatattttta
     2221 atgaaaatga tgaacaaaaa aaagaagatt tgctagagat tatcaatcct gaaattattc
     2281 ctttagatga agaaatgatc acttgtaccg aagggtgttt gagtgtgcca gatttttttg
     2341 aagaagtgaa acgctataat catatcttgc ttaaatatca agatcgcttt ggagaattta
     2401 aagaacttga agcaaaaggt tttttagctg tggctattca acacgaaaat gatcatttga
     2461 atggacattt atttatagaa aaaatttctt ttgctaagcg tcaaaaattc gataaagaat
     2521 ttaagaaaaa gaagaaaaat cataaaaaag agaaatgaaa aaactaaagt gcataagctt
     2581 tcatgaaggc ttagacatta tagaggtaga atccactttt acaagaggtt tgccaaattt
     2641 aagcatagta ggacttgcaa gtgtagcgat taaggaaagt gtcgaacgca tcaaagccac
     2701 acttttaagt tgtgattttg cttttcctgc taaaaaaatt actatcaatc ttagtccttc
     2761 aggcatccca aaaaagggat cgcattttga tttggctatc gctttattaa tccttttgca
     2821 aaatgaagaa ttagatgact tttttgtagt aggagaatta ggacttgatg gaagtattaa
     2881 aagcacaaat gagctttttt ctttgctttt gtttctttct gctaaaatta aaaaagctaa
     2941 aatcgttgtt ccaaaaagta tagcacaaaa agcttccatg ataccaaatt tagaggttta
     3001 tggacttgaa aatttaaatg aagcaataga gttttttaaa gaaaaaaatt atgaaaattt
     3061 tcgcttttct cacaatcatc ctttattcgc aagcccttta caaatagaaa atgaaatttt
     3121 tttacaaaat atggatttta aacttgattt taaagatatc aaaggacagg aaaaagccaa
     3181 aagagcttgt atgatagctg ctttaggtat gcataatatc ttatttgaag gaagtccagg
     3241 aagtggtaaa agtatgtgtg ctaaacgcct tgtttatatc atgcctcctc aaagtttaag
     3301 tgaaatttta atgcaaaatg cttatatgtc tttagattca aaagattgtg aatttactaa
     3361 aattcgtgct tttcgtcatc ctcatcatac ttctacaaga gcaagtattt ttggcggagg
     3421 aacaaaaaat gctagaattg gagaagtcgc acttgcaaat ggtggagtat tgttttttga
     3481 tgaatttcca cattttaaca agcaaatcat agagagttta agagagcctt tagaggatca
     3541 taaaattcat atttcaagag taaattctaa aatcacttat gaaacaaaat ttagctttat
     3601 agctgcccaa aatccttgtc cttgtggaaa tttattttct aaaaatcttt cttgtgtttg
     3661 tagtgaaaat gagattaaaa aatacaaaaa tcacatttca gctcctatta tggataggat
     3721 tgatctttat gtagctatgg atgagatcag caaggatgat aaaacgagta taagttctaa
     3781 agaaatgagt gaaaaaattt tacaagcttt tatttttggt aaaaaacggg ggcaaaaaga
     3841 atttaatggg aaattaaaag atgaagattt aagtcgtttt tgtgtactag aaaaagatgc
     3901 caaagatacg ctagatttag caatttcacg ttataatctt tctttgcgat cactcaataa
     3961 aattttaaaa gtttcaagaa gtatagcgga tttagaacaa agtcttaata ttagcaaaac
     4021 ccatatttta gaagctttaa gctttagagc aaggaattaa aatggaaaat aaaagtatag
     4081 ctatctttat agatgcagaa aatatccctg caaaatacgc taaaagtatt tttgatattg
     4141 cttcagatta tggagaggtt atcattaaac gcatttatgg ggattggact caaaaaaata
     4201 tacaaggttg gagagagcaa attgctgaat attctttaat cgctatgcaa caatttaatt
     4261 ttgcagccaa caaaaactca agcgatatgt atttaatcac tgaaatcatg tccatatttt
     4321 atgaaaaaaa tatagatatt tttgttattg tttcaagcga tagtgattat acttcactca
     4381 ttcaaaaatt aagagaaaat aaaaaacaag ttataggaat ggggcttgaa aagtctataa
     4441 aatcctatgt aaatgctttt agtgaatttt tttatttaga taaagatgag agtaaaaaag
     4501 aagatatttt aagtaaggat tatttaagag ctttaatcaa tatcaccgaa cagcttatcg
     4561 atgaaaaagg gcgcgctgaa tacgcacaaa tccgcactaa tatgaaccgc aaatactcag
     4621 attttcatcc gcaaaattat ggttttaaga attttcgtgc tttgatccag aaatttttac
     4681 ctaaaatgaa aaaatttgaa gaagaaagag aaaaaaatat atatttttta gtgaaaaaag
     4741 attatgaaag ctattattga taatataaaa attttagaac aaaatgctat aaataaaggc
     4801 ttagatgagc ttattttaat ggaaaatgca ggattaaatt tagccaagct gattaaaaaa
     4861 gaagctaaaa aaattcgcat tcaacgcaag attagaaaag taaaaacact ttttttatta
     4921 ggcgggggta acaacgcttc agatggcttg gtggctttaa gaaatttaaa acacgctaaa
     4981 gcttataaaa taggctttaa agaaaatacg ctttttaaaa aacaagagca aattttacaa
     5041 aattatgctt ttaaattttg taaaaaagaa cccaatttta aaaaatttca tattattgtt
     5101 gattgtattt taggtacagg ttcaaatcgt tgtttagatg aaaaaacaag tttaattatt
     5161 caaaaagtta atcaaagcaa agctttaaaa atagcttgtg atatacctac aaatttggga
     5221 ttttatcctt gttttaaagc tgatattaca ttttgtatgg gagctttaaa ggaaatttta
     5281 cttgaagatt ttgctaagga atttgtagga aggattaaaa tagccaattt aggcattagc
     5341 tctaagaaat tttaccctaa ttctcaagct tttttgcttg aaaaaaaaga tttaaaaact
     5401 atagatagaa aaatcaacgc caataaagga aattttggcc atatttatat agttgccaat
     5461 gcaagtgctg gaactttagc aggacttgga gccttaaatt ttggagcagg tcttgtttct
     5521 ttagtagcac aaaaaagttt ctcgcctctt ttgatgttaa aagaaaaaat tgaaaataat
     5581 gcaagtgcta ttgctttagg tatggggctt gaaaatttgg attttctaaa agatgaaatt
     5641 ttgcaaaaca ctcctttgat cttggatgca aactgctttt taagtgaagc tttgctttgg
     5701 tatttaaaca gaaaagatat tgttataacc cctcatccaa aagaatttat aaaactttat
     5761 aaaatgtgct ttgatgagaa tttagatata gaaacattgc aaaaaaatcg ctttttctat
     5821 gctagaaaat tttcacaaaa ttatgattgt gttcttgttt taaaaggagc aaatcctatt
     5881 attgcacaaa aagaaaaatt atttgttgta aatttaggaa atcaagcctt agctaaaggt
     5941 gggagtggag atgttttaag tggaatgatt gctgcacatt taggttttgg ttttagcgct
     6001 ttagaagcag caaaaaatgc tactttagct catggacttg ttgcaaaaaa atataaattt
     6061 aataaaaata gctttgacgc tttaaaactt atcaaaggat taaaatgctt gtaaaattag
     6121 ctgtactttt tagtggaaat ggaggtaatt tagaaaatat tttagaaaaa cttcataaaa
     6181 aaaccatagg ggaaaatacc tatgaagtag tactttgcct ttgtaacaaa aaagatgctt
     6241 ttggtataca aagggcaaaa aaatttggtc ttgatactgt cattgttgat cataaggctt
     6301 ataatactcg tgaagaattt gatacgattt tggtacaaaa aatcaaagaa agtggagcaa
     6361 atcttactgt attagcaggt tttatgagaa ttttaagtcc tgtttttaca aaaaatatta
     6421 aggcaattaa ccttcatcct tctttattac ccctttttaa aggagcacat gcgattaaag
     6481 aaagttatga aagtgatatg aaagtggctg gtgtgagtgt gcattgggtc agtgaagaac
     6541 ttgatggtgg aatgattata gctcaaaaag cttttgaaaa aagaaatttg agttttgaag
     6601 aatttgaaga aaaaattcat agcctagaac atgaaatttt acccttaagt gtgattgaaa
     6661 ttttttctta aagaattaaa ggtatttgct ttaaaactat aaaatatcgc tttaaaaaat
     6721 tttaaaattt tcaaggaaat ttatgtttga atggatattt agtattgatg cttggattac
     6781 tttagctact ttaagtgctc ttgaaattgt actagggata gataatatca tttttttagc
     6841 tattttagta agcaaactac cccctgaaca tcgtgataaa ggacgtatct taggtttagc
     6901 ttttgcaatg attacaagaa ttttacttct tttatctctt ttttgggtga tgaaacttgt
     6961 aacacctttg tttagtgtat tgggcaatga aatttcagga agagatctag ttcttttact
     7021 aggtgggctt ttcttgattg taaagtctat taaagaaatt aaagagcaaa tttctcatca
     7081 agaagaaagt caaagtcatt ttaaagcaag caataaactt tggatagttg tagctgaaat
     7141 tgctgtgatt gatatagtat tttcacttga tagtgttatt accgcagtag gaattgctca
     7201 agatgtaacc atcatgatta tcgctgttat tatcgcagta gctgtgatgc tttttgcttc
     7261 taaacctata gcagattttg ttgaaaaata tccaagcatt aaaattttag ctttagcttt
     7321 tttggtgtta ataggcgtag ttttagttgc tgaaagtttt gatattcata ttgataaggc
     7381 atatatttat actgctatgg cttttgcttt agtggtgcaa attttaaata ttttagatca
     7441 aagaaaggaa aaaaatggct aaagacgcta atggaacaga acttaacgca ggtgatagcg
     7501 tgagtgtaat aaaagatctt aaggttaaag gcgcaagtac aactttaaaa cgtggaacta
     7561 ctataaaaaa tattaagctc acttctaaag aaggtgaaat tgaggctaga gtagataaat
     7621 ttggcgttat tgttttaaaa actgaatttt taaagaaaat ctaggcaaag aatgtgcgaa
     7681 tcttacttgt tttaagaggg aattattacg caggacaaga agaatttatc aaaaataata
     7741 aacttcaaaa ttatacactt gatttaaatg ctttgcgtct tttatcagga agcgttaaaa
     7801 atatagtcag tgaatataaa attttaaatg ttaaaaatga tgaagatttg agtaaaattt
     7861 tactcaaact tctagaaatg cgtatgcaaa aaggtgagtt ttgcatcata aacgcttaca
     7921 atgaaacatt aaaaatttac aaagacttag ctaaacaata tcgctataaa atgtatgtta
     7981 ttgtttttga tagctcttta aaacaatgtc aagaaaaaaa tcttttagaa gctaaaaaaa
     8041 atggatatat catcccttat gctcttttgg aaaaaactca agatttactc aaaaaaaatc
     8101 caaaaaaata cccaatttta gactcgagcg actggaaaaa atgtctttac caaatgccaa
     8161 atttaagcaa atataaaaaa attcatcata taggagattt acaaggttgt tatagtgttt
     8221 taaaagaata cattaaaaca atcaaagaag atgaatttta tatatttttg ggagattata
     8281 tcaacagagg tatagaaaat ggcaaagtaa taaaatttct tttaaaaatt tgtgaaaaag
     8341 aaaatgtatg cttattagaa ggaaatcacg aaagacatct tataaaatgg gctaatggag
     8401 aattgtcaaa ttccaaagaa tttaatgaaa atactttaaa ggattttaga aaagaaaaac
     8461 ttactccaag agatgctaga aaactctatc ctcatctaaa agaatgttta tactacaaat
     8521 tccaaaataa attcatattt tgttcacatg gaggagtaaa ttttataccc tccaaacctg
     8581 aaaaaataag ttttatacca agccatgatt ttatttatgg tgtaggtgga tatgaagaca
     8641 gtcaaaaagt agcaaatcaa ttttgtaatt tcacctcgga caatctttat caaatctttg
     8701 gacacagaaa taaagaaaaa cttcctatga aaatagccaa aagagtattt ttatgcgagg
     8761 gtaaaataga tggtggtgga tatttacgcg tagttacact agataaaaaa ggttttgagt
     8821 gtatagaaat taaaaaccaa atttacaaaa agaaataagc ctaaagaggc ttattcttca
     8881 tctttatttg tttttttaac caccttaaca cgctctatag aattcccgtc cattttttta
     8941 acttcatagt aacaaagttc atcttcaatg cgatctccta ccataggcaa gcgtcctaaa
     9001 agattaaata catatccacc tatagtaact tgttctaaat cctcatcata gtttattaca
     9061 agcatttctt caacagtttc tatatcgcat cgtccttgaa attcatagat attttcagca
     9121 agttttttat agctgtcttc ttcatgctcg cttttaattt cgccaataat ttcttccatg
     9181 atatcttcca tggttaaaat tccagcagtt ccaccatact catcaactac taatgcagta
     9241 tgagagcgtt ctttattcat cattacaagt acttttgaaa tactgatatt ttcaggaacc
     9301 aaaatcaaag gtttaacaaa agtatctaaa ttttgacttt tatggcttaa ttcattttgt
     9361 attatgtctc gtatgtgtat catccctaaa atagtatctt tagaaccgtc aatataagga
     9421 aagcgagtat gtttatgttc acaaatgatt tgcatatttt cttcgtaact tttttgttta
     9481 tttaggcaaa tcatatcttt tctaggagtc ataatctctt tagcaacagt atctgaaaaa
     9541 tcaacagcat tgcgtatgat ctctgtttca aattcatcta aaactccacc tttttgactc
     9601 tcacttgcta tgattttaat ttcttcttcg ctatgagtta gctcgctttc tttagcaggt
     9661 tttattccaa aaagtttcaa acttatagct gctaaaaaat cgaaaatttt aatacaaggc
     9721 aaaaagagta tccaaaacca atgaagaggt ctagctataa ataaaaccgc tttatctgca
     9781 actgcaatag ctatactttt tggcacaagt tctcctaaaa ccacatgtaa aagagtaata
     9841 atactaaaag caataataaa agctatagta tggataataa cagtgctaaa accaagatta
     9901 ataagcggaa tttctagcat ttttgcaata gcaggctcac ctatccaacc aagagctaga
     9961 gaacttaaag tgattcctaa ttgacaagca ctaagataag tatcaagtct tgaagtaacc
    10021 tccaaagctt tcttggcacc agcttttttt tcttttacca tctcttcaag cttggaacga
    10081 cgtactttaa caatactaaa ttcagacaaa acaaaaaaac catttaaaaa cactagagca
    10141 agtgcaacaa caaccataag tatagaatat cctgcatcaa aagatgctgt agaagtttgg
    10201 tttaaatcca aaacctgact ggggtccaat gaagctcctt aagaaataaa atattattaa
    10261 accttattat acacaattaa aagtaaattt aatatttgaa ttttttcttg tattttataa
    10321 gaaaaaacta agacttataa gaaatatttt tctcaaattc ttttaaacgc ttatatatac
    10381 ttctaagttg agtgatagtt gtccagtttg tgataaaaac actaaaagag cttcgtactt
    10441 gatcaaaagc attgttaatc tgcattacaa taccaagtcc tatagctccg gcaaaaagcc
    10501 ctggtgccat gattaaaaat ggcactataa ctatcatttg ctcaaataaa atgagccaaa
    10561 tattaaaata tccataatgt aaaaaaagtc ttttatagtt aaatttaagc cctgtaaaaa
    10621 gctctatcat agtctcattt ttagcgtatt ctttgcgatt atcctcagca taaacaagct
    10681 cttttctaaa agctgcttca gctttttgat tgttatattc aagtccagga agcttaatac
    10741 ctacaaacca cgacacaacc aagcctccta aagaaatcaa aagtgcaata taaacaagca
    10801 aaccatcaat gttttttaaa aaataaaaag aagaattttc gcttaaattt gcaaataaag
    10861 ctttactcac aacatcactt aaactccata aaatcggaat aaatgctaca agggtcatca
    10921 aagcttttat aaaactaagt cctaaactct ctacaatttt agaaaaatta taagtatctt
    10981 cttgaattct ttgcgaactt ccttctatat tatcatcttt atttttccaa aattttaaat
    11041 aagaaaaagt catagcctca cgccacttaa aagcatagac gctagcaaaa tagatattaa
    11101 tcgtagcgat taaaacataa ggaatagcaa tagccaaaaa aactaaaatc aaagcataaa
    11161 aatcatttgc tgaataattt ggcttttcaa tcatagccct agagttgaaa aaatattcta
    11221 ataaattttg ataataatac aatgcgcctt tattgataaa attagctttt tggaaatttt
    11281 gctcagctct ttgattagcc tcttggatta aagtggtatt attttcaaga ttttcttcta
    11341 ttttttgcgt agaattagaa tccaaaagtt ctatttttgg cttttgtaaa acattgtaaa
    11401 aatcactata ccatgaattg attgcaacgt ttaagcttgt ttgtatatat aagaaaaata
    11461 acagtaaaaa aagtcccaaa taagcccata aagcccattt tttacttgca aaaaatgaag
    11521 aaaacatgct actacctttt aaaagaaaaa ttttaatcaa ctttatttaa tcaagagttt
    11581 attaaaaatc ataaatttat caacacatgt gtcaaaaata aacctcttta ttctttaaag
    11641 aaatataaaa atataaagat tacgtcatat ttacttttta atattaatat ttcttatcaa
    11701 aatatctaaa aaggaattaa tgtctatgaa aaaaataatt ttatttttac tatgcgttgg
    11761 ctttgctttt gcttgctctg aacattctca tactgatttt aaagatctta ataaaaccga
    11821 gtataattct caataaagga taaaatatga aaaaaatctt tcttatgttt ttaacggctt
    11881 tttcattttt aggtgctagt gagcttaata tttactcagc aagacattat gatgctgatt
    11941 ttgaaatcat caaaaaattc gaagaaaaaa caggtattaa ggtcaatcat actcaagcta
    12001 aagcttcaga acttattaaa aggctttctc ttgaaggaag taattcccct gctgatattt
    12061 tcatcacagc tgatatttca aatcttacag aagctaaaaa tttaggactt ttatctcctg
    12121 tttcatcaaa atatttagaa gaatttatac ctgctcattt aagagataag gataaagaat
    12181 ggtttgcgat cacaaaaaga gcaagaatta ttgcttacaa caaaaacgca aatattgaca
    12241 ttagcaaaat gaaaaattat gaagatttag caagagctga atttaaagga gaaattgtta
    12301 tgagaagtgc tacagctcct tatagcaaaa ctcttttagc atctattata gctaatgatg
    12361 gaaataaaga ggctaaagca tgggctaaag gtgtgcttga taatcttgcg acaaatccaa
    12421 agggtggaga tagagatcaa gccagacaag tatttgcagg cgaagctaaa tttgcagtta
    12481 tgaatactta ttatataggg cttttaaaga attctaaaaa tccaaaagat gtagaagtgg
    12541 ggaattcttt gggtattatt tttcctaatc aagacaatag aggaacgcat attaacatta
    12601 gtggtattgc tatgacaaaa tcaagtaaaa atcaagatgc ggttaaaaaa tttatggaat
    12661 ttatgttaag tcctgaaatt caaaaaattc ttactgatag taattatgaa tttcctataa
    12721 gaaatgatgt agaattaagc caaacggtaa aagattttgg aactttcaaa gaagatcaaa
    12781 tccctgtgag taagatagca gaaaatatta aagaagcggt taaaatttac gatgaagtcg
    12841 gttttagata atgtataaaa ccttaaaata ctataaactc ggggcaattt tacttgccct
    12901 ttttcttgct ttacctattt ttggtatttt tgctgaactt ttttatattt tatttcaaaa
    12961 ttttaataca agtaatttaa cccaattttc atctattaaa gaaaatttga gtcatttttt
    13021 tgattattta tttttaaaat tcatcaaaga tacttttata attagcatgg gagtattgtg
    13081 tttaagcttg attttgggtg tgagttctgc ttatttgatc gcaaattatg atttttattt
    13141 ctgtaaaatt ttagaaaaat tactcatttt acccttagcc atacctgctt atattttagc
    13201 ctttgtttat gtgggaatta tggattttca aggatttttt cacgaaaatt ttggctttag
    13261 gatagatttt ttcaatcatt atggtgttat ttttgttttg gctatttctt tatatcctta
    13321 tatttattta tttgctaaaa cagcctttaa aagtgaagct aaagaggctt atgaagtagc
    13381 taaaatcatg aagtattctg aatttagaat ttttacacgc gtggcacttt tgagtgcaag
    13441 acctgccatt ttttctggag ctttattggt tttaatggaa actttgagtg attatggtgc
    13501 aagtgcttat ttgggagtgg atactttttc ggctggaatt tttaaactct ggtatgattt
    13561 gaatgattct tattcttcta gtgttttatc gggtatttta atgctttttg tatttttgat
    13621 tatgtatgtg gattattatt ataaaaataa acatcattat agttttaatc aaaatttagc
    13681 tctttttatc aaaaaaagaa aattaaatcc tattaaacaa attctatcct gtatttattg
    13741 ttttatgatt gcttttgtag gttttatttt accttttatt tggctagttt attgggggct
    13801 aaaagatcat aagctttttg aatcacaatt ttatattatc agttttcaaa ctataatctt
    13861 agctttagtc actgctttaa ttaccacttt tttagcttat tttttgatgt ttagttctag
    13921 gatagttaaa aatcattttt ttaatttatt tattttaaaa ataagttctt tgggttattc
    13981 tatacctgct gctgctttag ggattagtat tatagtgctt tttgtatttt tggataaaat
    14041 ttttcatatg agtttattag gaaattcttt acttgttctt gtttttgctt atgtaattcg
    14101 ttttttagcg agtgcaattt attctttaga aggaggttat aataaaattc atctaaatat
    14161 tgatgaggca agtttaaatt taagaacgag ttattttatt ttatttttta aaattcacac
    14221 acctttaatg aaacattttt tatttttggc ttttattatt gtttttattg atacgattaa
    14281 agaacttcct ttaagtagaa ttttagcgcc ttttggcttt gaaactttaa gtgttaaagc
    14341 tttctggttt gcaagtgatg aaagaattta tgatgcagct ttgccttcct tgtttatcgt
    14401 ttttctttct ttaatggttg ttgtttggat ggataaaatc acaaggaaag atgatgttag
    14461 aaattaaaaa tttatctaaa aattttggaa aaatacaagc tttagaaaat atcaatcttc
    14521 atgtcaaaga aggagaattt ttaagcattt taggaggtag tggaagcgga aaaagcacgc
    14581 ttttaaggat tattgctaag cttgaacaag ctagttctta tgatttgttt tcttgcaaag
    14641 gtgaagtggc tttgatgttt caaaattatg ctttatttcc tcatttaaat gttgagaaaa
    14701 acatactttt tgcactttac gataaaaaag ataaaaatca aattttaaat catttgctta
    14761 aaacttttga aattgaagat ttaagatata aaaaaatcga tgaaatttca ggagggcaag
    14821 cgcaaagagt ggcttttgct agagctatag caagaggatg tcagcttttg cttttagatg
    14881 aacctttttc taatttggat caaaatttaa aacaggattt aagaagagaa ttgaaaaaaa
    14941 tgatagaaaa tcaaggcatt acggctatta tggtaactca tgatattgaa gatgcttatt
    15001 gcatgtctga tcaaatcgct tttttagaaa aaggaaaaat tttagctcat gcaaatccta
    15061 aagaacttta ttttaaacct gattttaaaa gtgcacaaat tttacctgat ttaaatatca
    15121 tagaagaaaa acttgattta gaagatgaat tttttgcttg gatagcttca aaaaattata
    15181 tttttggtta tgcagagctt aaaataggaa atcgctttga ggctaaaatt ttacaaaaag
    15241 aatttttagg ggctttttgt aggctaaaat tactttataa aaatataatt ttttttattt
    15301 tggtgagttc aagttatgat ttagaagaga aaataagttt tgatattatc aatttttagt
    15361 ttaaatttga taaaatcaaa aaaatttttg aaggatagga atgaaaaatc ttttaatcat
    15421 aggcgcaggt ggggtaagtc gtgtgactac tgtaaaatgt gcaatgaatt ctgatacttt
    15481 tagtaaaatc actttagcta gtagaacaaa aagcaaatgt gatgaaatcg ctgcttttat
    15541 caaagagcgt ttaggggttc aaattgaaac ggcacaaatt gatgctgatg atagcaatgc
    15601 agttgtagaa cttatcaaga aaacagaagc acaaatttta ctcaatgtgg ctttgcctta
    15661 tcaagatttg agtttaatgg atgcttgtat aaaagcaaga attgattatg tagatacggc
    15721 aaattatgaa catcctgatt tagctaaatt tgaatacaaa gagcaatggg cgagaaatga
    15781 tgagtttaaa caagcaggaa ttttaggact tttaggaagt ggatttgatc ctggtgtaac
    15841 taatgttttt tgtgcttatg cacagcaaaa tttatttgat gaaatttctt atatagatat
    15901 tttagactgc aatgcaggtg atcatggcta tgcttttgcg accaatttta accctgaaat
    15961 caacctgcgt gaggtttctg ctaaagggcg ttattgggaa aatggcaagt ggatagaaac
    16021 gcagcctatg gaaataaaaa tggagtggga ttatccagaa gtaggtgtga aagatagcta
    16081 tttgctttat cacgaagaac ttgagagttt ggtaaaaaat atcaaaggtt taaaaagaat
    16141 acgctttttt atgacctttg gacaaagtta tttaactcat atgaaatgtc ttgaaaatgt
    16201 tggaatgtta gggattaaac ctgtgatgca ccaaggaaaa gaaatcattc ctatagaatt
    16261 tctaaaaacc ttacttcctg atcctgcaag tttgggacca cgcactaaag gttataccaa
    16321 tataggttgt gtgattcgtg gtaaaaaaga tggaaaagac aagcaagttt atatttataa
    16381 tgtttgcaat catgaagaat gttataaaga aactggtgca caagctgtga gctatactac
    16441 aggtgttcct gctatgatag gtacgaaatt aatcgctaaa gggatttggc aaggaaaagg
    16501 cgtgtttaat atggaagaat ttgacgctaa gccttttatg gaagaactga attctcaagg
    16561 acttccttgg aagattatcg aaatgactcc aagcttagga gagtaagtgc tagagcactt
    16621 acttttgtcc tatataaata aagtgctcca cactgccttc aaaattatac agattaatta
    16681 attcataatc tccccaaaat aaaggtttaa aaggtttaaa atcttctttt aattcttcta
    16741 tgtctttagt aaagcgtata tatgaagaac cactcaatct accacttgga catcctttta
    16801 cttcacgcaa gccattatcc ataagttctc ctctttcata catactatag cctttatcgc
    16861 tcatcatggt tgcaaatata atagctcctt cattgcatag ttcataaaat tcttgcacag
    16921 cttctttaaa agcttgtttt gtaagataat ataagctttg atttgcaaat ataaaatcca
    16981 tttttgtatt gaagagtttt ttaaagctag aattaggaga tatgatgtga aaatttttag
    17041 aatctaagca aggatctttt tcccaaactt tttttaaact aggaactata tcaatgccat
    17101 aaggctctat accccccccc ggttatattt ttaaaatact tagaatgcac tccatttccg
    17161 caaccaaaat caagtaattt tccacttgtt ttgcttagtt tgtattttaa gattctctcg
    17221 taaaatctta taacatgacc atcaggatat tgaagtccat aaccttcttt gtcatatttt
    17281 tgagtatatg cagataaaga attatccatt tttgtccctt tttgtgtaga atgttgactt
    17341 aatgtcaaaa tccattctag cacaaaaaag attaaagtta ttttacaggg tgaagttcat
    17401 ttgcataaaa gctaactgat cccatgcctt cttttaaagc ccattcgtaa gcttttgcaa
    17461 caaattccca gttaatatga gcatagaatt tttctaaata agcagggcgt gcattgcgat
    17521 gatctacata ataagcatgt tcccaaacat ctacaacaag taaaggaact ttatcttcag
    17581 taattggtgt agctgcgttt gaagtaccta caaattctag tttttgattt ttagtattat
    17641 aaactaacca aaaccatcct gaaccaaaaa ctcctgtagc acctttgata aattcagctt
    17701 tgaaattttc taaagatcca aattcttttt ctagtgccgc ttgtaaatta gcatctatac
    17761 tttgacatga accgccacag ccacagcctg tacttggctt aatgcaatca aaataaaaat
    17821 catgattata aacttgagct gcgttattaa atacgccccc atttgaagtt ttgataatac
    17881 ttacaagatc tttacctgca aattcagtat ctttaataag attatttaga tttgtaacat
    17941 aagtattgtg atgttttcca tgatgatagc taaaagtttc agcactcaaa aaatcaccaa
    18001 aagcattggt atcataaggt aattttctta attcaaacat aatttctcct ttatttttag
    18061 tttgatattg aaaatattac cataataata ttaaaaagag taaaaatatc ttaaaagc
//
LOCUS       DAZBIH010000024        17592 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.024, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000024 DAZBIH010000000
VERSION     DAZBIH010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17592)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17592)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17592
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.024"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            74..589
                     /gene="nrfH"
                     /locus_tag="ACHFOB_000675"
     CDS             74..589
                     /gene="nrfH"
                     /locus_tag="ACHFOB_000675"
                     /EC_number="1.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c nitrite reductase small subunit"
                     /protein_id="HFN5799490.1"
                     /translation="MIILRRKILKKTSNLFTIFLVLLFVFFAVGFYTFYNAKGTSYLS
                     NASESCNNCHIMNEVYNEYMAGPHSQKVKGEPRATCVDCHLPHNFVAKWIAKAQSGLG
                     HAYAFTFKLDELPTNLSATEKSRKMVQENCIRCHADFAQTAINATTNPHADKSLNCAS
                     CHKDVGHKHGI"
     gene            604..2436
                     /locus_tag="ACHFOB_000676"
     CDS             604..2436
                     /locus_tag="ACHFOB_000676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0042279 - nitrite reductase (cytochrome,
                     ammonia-forming) activity [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-forming cytochrome c nitrite reductase
                     subunit c552"
                     /protein_id="HFN5799491.1"
                     /translation="MKKNILRLGIVVLVLLIAGVLWLNNDINQKKEDEANKNAIAANA
                     DFSLLSDDDPNFEKWGKVFPEQLKMYLTVEKEEPKTTEFGGNLAYSKLIRFPQLTILW
                     AGYPFSLDFNEERGHFWVQVDQMKTARNNKDFLNAHGLAAFKGQPAACMNCHSGWTPW
                     LIKNVAKGDFTAFNSTNYWTMIKNIPAVDGIVENSPEHAGPHGGKRMGVTCADCHNPN
                     DMSLRLTRPAAINALVSRGYEKDPVQGVKATREEMRTLVCSQCHVEYYFKPTGKKVKV
                     MGETIVDDSSKKWWNGTQKNYDEYEFWRDGNKAKEIETDGIVLTFPWSEWKKGQPFRI
                     EMLDDYYDKVRGVFGADFTHKLTGAQIIKIQHPESELYSGGVHAANGVSCVDCHMPYV
                     REGAKKVTQHNITSPLRDINSACKSCHKQSEDYLKAQVLDIQNSVAHDQRTAEYAIVS
                     LIMDTKKLRDELGNMEKFQSDGKADAKKISEELKEVLELHRKAQMRADFVNAENSTGF
                     HNPREASRMLLQAVDMARMGQTKLVEIAAANGIKDFKTSNLGFEDIQKFNPGELYYKV
                     DVNNHKAGERYYADEKDVNGNPPKELLEHDKELAPYNYQVIDKK"
     gene            2572..3126
                     /locus_tag="ACHFOB_000677"
     CDS             2572..3126
                     /locus_tag="ACHFOB_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799492.1"
                     /translation="MINKNKLFRQVHIYLSLFFLPCALLFALTGIAYIFGINQDVGLK
                     VEQYQLSKVIESGKEREALIEYLKTNGLKVPSNTNIIKSKDKGITIGGTHYSANITQN
                     STNEYNITLKTRSLLGDMIMLHKDKGAWYFSVLSVGFGITLFMLYISGLMITLFANKK
                     DRSKQFAVLGVGVVVTLLLAYLSL"
     gene            3190..3279
                     /locus_tag="ACHFOB_000678"
     tRNA            3190..3279
                     /locus_tag="ACHFOB_000678"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:3224..3226,aa:Ser,seq:gct)
     gene            complement(3486..3767)
                     /locus_tag="ACHFOB_000679"
     CDS             complement(3486..3767)
                     /locus_tag="ACHFOB_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008657 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) inhibitor activity
                     [Evidence IEA];
                     GO_function: GO:0042803 - protein homodimerization
                     activity [Evidence IEA];
                     GO_process: GO:0009432 - SOS response [Evidence IEA];
                     GO_process: GO:0030541 - plasmid partitioning [Evidence
                     IEA];
                     GO_process: GO:0051290 - protein heterotetramerization
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HFN5799493.1"
                     /translation="MKIVPTPKFKNELRHIVNFINLDSSFYAKEFLNDIYPICRNLSF
                     MPYKNRKSLSFDNENIRDLIFKGYIIPYLIDKSKNEIVILGIYKSNLWD"
     gene            complement(3768..3989)
                     /locus_tag="ACHFOB_000680"
     CDS             complement(3768..3989)
                     /locus_tag="ACHFOB_000680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799494.1"
                     /translation="MNLEFSKETQHFLTNYCKDNNLSEKEVLELALSYLEHKIRIDGY
                     KKDIELYKQGKLKTLDFDETFNDIRKDLE"
     gene            complement(4143..5135)
                     /gene="ceuB"
                     /locus_tag="ACHFOB_000681"
     CDS             complement(4143..5135)
                     /gene="ceuB"
                     /locus_tag="ACHFOB_000681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enterochelin ABC transporter substrate-binding
                     protein CeuB"
                     /protein_id="HFN5799495.1"
                     /translation="MKKSLVFAFFAFFLSLILTACNSNSNENNASSTTKTNTATVKVL
                     PISMSDEGDSFLVKDSLGENKIPKNPSKVVILDLGILDTFDALKLNDRVAGVPAKNLP
                     KYLQQFKNKPSVGGVQQVDFEAINALKPDLIIISGRQSKFYDKLKEIAPTLFVGLDNA
                     NFLSSFENNVLSVAKLYGLEKEALEKISDIKNEIEKAKSIVDEDKKALIILTNSNKIS
                     AFGPQSRFGIIHDVLGINAVDENIKVGTHGKSINSEFILEKNPDYIFVIDRNIIVGNK
                     ERAQGILDNALVAKTKAAQNKKIIYLDPEYWYLASGNGLESLKTMILEIKNAVK"
     gene            complement(5148..5903)
                     /locus_tag="ACHFOB_000682"
     CDS             complement(5148..5903)
                     /locus_tag="ACHFOB_000682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799496.1"
                     /translation="MIKLKNITKFYDNKAIISDLSLDFHKGKITSIIGANGAGKSTLL
                     ALASRLIKPSSGEIYIDGMNLKDYKEQILAQKISILKQQNNINLRLKVEELVAFGRFP
                     HSQGRLNANDKIKINEALEYMGLSNLRNEFLDALSGGQKQRAFIAMIIAQDTEFIMFD
                     EPLNNLDMKHSVQIMQLMKNLVKDFNKSIAVVLHDINFASIYSDEIIALKDGKLLKQG
                     SKDEIINQENLKQIYDMDIPVSQIDGKKICIYF"
     gene            complement(5900..6838)
                     /locus_tag="ACHFOB_000683"
     CDS             complement(5900..6838)
                     /locus_tag="ACHFOB_000683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chelate uptake ABC transporter family
                     permease subunit"
                     /protein_id="HFN5799497.1"
                     /translation="MRKKMLILSFLTLGMIGIFILVGLNGFDEYALKSRFLQIAAIII
                     VAICIAVSTVIFQTLCNNKILTPAIIGLDSLYMLLQSALIFSFGAANLSVYKNDINFL
                     ITLVCMVVFSLGLYKILFSSDRSIYLIMLLGLVFGTLFSTLSSFFEVLIDPDEFMVIQ
                     GRMFASFDNIAFDVLILAYIISFLSFIWIFRYMKFLDPLNLGKDLAINLGINYQKISK
                     QLMIIIAILTSISTALVGPITFLGLLVVNITYELFKTAKHSILLSACILISILALLGG
                     VFFVSRVFDYNATISVVINFLGGIYFIYLVLKGNKL"
     gene            complement(6831..7799)
                     /locus_tag="ACHFOB_000684"
     CDS             complement(6831..7799)
                     /locus_tag="ACHFOB_000684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5799498.1"
                     /translation="MFFKHILSLKVLIALLLFFGMISLFIGVISINVKDILNLNSTQL
                     EIITLTRIPRLIAILLTGMSLSICGLIMQQLTQNKFVSPTTAGTMDCAKFGILISLIF
                     FAGASFFTQAIIASVFALLGSFIFIQILRKIKLKDVIFVPLIGLMFGGIISAITTFFA
                     YALNYIQNIQGWLQGSMANVMQGNYELLYISLPLFILAYFLAHKITIVGMGEDIALNL
                     GISYNGILFLGLMIVSIITSLVIVSVGIIPFLGLIIPNLVALYLGDNLRKNLIYIALC
                     GALFLLVCDIISRLVIFPFEMPLSITTGVLGSLIFIFLLLKRKAYA"
     gene            complement(7888..8877)
                     /locus_tag="ACHFOB_000685"
     CDS             complement(7888..8877)
                     /locus_tag="ACHFOB_000685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004620 - phospholipase activity [Evidence
                     IEA];
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipase A"
                     /protein_id="HFN5799499.1"
                     /translation="MRKIALFLNLCVFIWASDLQQALEYEKQGDYKKAMEIYKKLALK
                     NSSVLISQEQNNSSQTTQTQNSITIKKEEKQDFSRLALANYLGENESFNPLGISSYKM
                     NYFLPFAYSFNSLGTNNNKSEAKFQLSVKKRLFENLLGLDEKYYIAYTQTSWWQIYEH
                     SSPFRETNYQPEFFIDFPLYLKDYEFFNNLRVGILHESNGKGDENLQSRSWNRIYVST
                     AILYNKFLFVPRLWYRIPESKKDDDNPAILHYMGNFDVNLAYLGDDYFINLMLRNNLK
                     FHDNKGAIQVDLGYDIFNNGIYWYLQYFNGYGESLIDYNKHLQRLSTGFLISY"
     gene            complement(8874..9449)
                     /locus_tag="ACHFOB_000686"
     CDS             complement(8874..9449)
                     /locus_tag="ACHFOB_000686"
                     /EC_number="2.7.7.77"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0061603 - molybdenum cofactor
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HFN5799500.1"
                     /translation="MQLNELNCVILCGGKSSRMGQDKSKLILKNQNLTQFQVNKFSKI
                     FKNVYVSAKEDKFENHFSLIKDSLEFEVYSPMLALYSILSNFKNEFVFVLSVDSPKVG
                     ENELLKMLPFLEQNYKIIIAKTPLHKHPLCGFYHSSLAQTCKNFLEKNEQKIGLLFSE
                     IKTKFVEFEDEDAFLNLNFYEEYEKFKSELK"
     gene            9511..10818
                     /locus_tag="ACHFOB_000687"
     CDS             9511..10818
                     /locus_tag="ACHFOB_000687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT RNA binding domain-containing protein"
                     /protein_id="HFN5799501.1"
                     /translation="MKYTELLQLQTFFSQFKKIDFIKRINDNILELSFDRERFIFDLT
                     RAMSVIYTAKFNAKNYNAPFDFMLKKYFSNAFIKEVKVLEGNRILCFSVKANKAYKSY
                     ESKIYFEFTGKNTNVILTDEKDLIIEALRHIDKSYRVIKPNVILESLKPYKMDENFEE
                     IKDFADYFSRKFTSIYESKIKQIKNLKLAQVDKKIQNLQELFSSLDEENSLLLKALEY
                     RKRADVLFANLSVLKDYEREFKLDDFEGKELEFKLEFSPKQSANLYYKNAKKLEQKAK
                     NLNIQRQNLKEKLDFTLSLKELLLQAKSEIELEILLPKKNSKKNQDHKQEDLVANFYF
                     NEFKICVGKNEKGNEFLLKNAKKDDLWLHVRNIPSAHTLIISNKQKISLDVIEFAARL
                     CVSFSKLKKGSYWVDYTLKNFVKVQQKAFVNYTNFKSINITKD"
     gene            10820..11158
                     /locus_tag="ACHFOB_000688"
     CDS             10820..11158
                     /locus_tag="ACHFOB_000688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799502.1"
                     /translation="MPVSPLGNVNYINQNMAYPATQASNELAKEGFAATLNMAEFNEK
                     EKTLNKLEKVNETHEIKEEIKEKAEQEEKKKKHNQEAKTSDDEKNEEDESKDPNFKDA
                     QSIHRLDISI"
     gene            11167..11892
                     /locus_tag="ACHFOB_000689"
     CDS             11167..11892
                     /locus_tag="ACHFOB_000689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HFN5799503.1"
                     /translation="MFNTTRIISALVMIGAIIIIALIDQFFINFIVFAVLLYLSFSEA
                     KKLFALENISIIPLAIAFILGSLSHKALLFGILALLLVVGSLVYKKASLKPALIYIYP
                     SLPILALWQVYLDQGMFALFWLIIIVAACDSGAYFIGKLMGKTPFSPTSPNKTLEGVI
                     GGLICASVIGTILGVFVYSFWLSLLCSFFVAIFAVIGDLLESYFKREAGVKDSGDLIP
                     GHGGVLDRIDAVIIAAFVMVAFL"
     gene            11889..12959
                     /gene="dxr"
                     /locus_tag="ACHFOB_000690"
     CDS             11889..12959
                     /gene="dxr"
                     /locus_tag="ACHFOB_000690"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0030604 - 1-deoxy-D-xylulose-5-phosphate
                     reductoisomerase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HFN5799504.1"
                     /translation="MILFGSTGSIGVNALKLAALKNIRISALACGDNIALLNEQIARF
                     KPKFVAIKDSKNKHLVKHNRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKE
                     LGKNIALANKESLVVAGSFLKGAKFLPVDSEHAALKFLLEGKKNIAKLYITASGGAFY
                     KYKIKDLNQVSLKDALKHPNWNMGAKITIDSATMANKLFEIIEAYHLYDFKEIDALIE
                     PRSLVHAMCEFKNGASTAYFSKADMKLAISDAIFEKQDTPILEAIDFSKIPALKFHPI
                     STKKYPIFKLKNTFLKEPNLGVIINAANEVGVYNFLENKSGFLDITKCIFKALDHFGV
                     PKISSIEEVFEYDFKTREYLRS"
     gene            12961..14355
                     /locus_tag="ACHFOB_000691"
     CDS             12961..14355
                     /locus_tag="ACHFOB_000691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M99 family carboxypeptidase catalytic
                     domain-containing protein"
                     /protein_id="HFN5799505.1"
                     /translation="MKIFLTILFFITSIFALDLDFSVGENGKSLDDNNTVLIFGGIQG
                     DEPGGFHAASLLLSDYNITKGKIIVAPNLAFDSIIKRSRGNNGDLNRKFASISPKDPD
                     YKTVQRIKELILLPEVSMVINLHDGWGFYKPTYIDAMQNPKRWGNSSVIDTSEINASK
                     YPDLENIATQTVNSVNSSLADPKHAYHLKNTKTQELGDMEMLKALTYFVISNHKAAFA
                     NEASKNLPVNLRAYYHLLAIENYLKTAGIEFSRDFELTPQGVDKAINKELEVKLFNDR
                     ILLSLKNPRKVINYVPFPVNKELNYNTSNELTAVIAEGNSFYIQYGNRFQTRLYPEYL
                     EFSDAFNEVTFQVDGNETTVPFGTKVKVKENFLIPKIANVRVNIIGFDHGKDESGILV
                     HKKNMQTQYSLDMAGKIYRVEFYELRGANLQQLLEANTNSKLIKNAKNLDLNTLKMAR
                     SKDKFLGSILVEFE"
     gene            14352..15359
                     /gene="tsaD"
                     /locus_tag="ACHFOB_000692"
     CDS             14352..15359
                     /gene="tsaD"
                     /locus_tag="ACHFOB_000692"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002949 - tRNA threonylcarbamoyladenosine
                     modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HFN5799506.1"
                     /translation="MKNLILAIESSCDDSSIAIIDKNTLECKFHKKISQELDHSIYGG
                     VVPELAARLHSEALPKILKQCNGHFKNLCAIAVTNEPGLSVSLLSGISMAKTLASALN
                     LPLIPINHLKGHIYSLFLEEKISLDMGILLVSGGHTMVLYLKDDANLELLASTNDDSF
                     GESFDKVAKMMNLGYPGGVIIENLAKNAKLKNISFNIPLKHSKELAYSFSGLKNAVRL
                     EILKHENLSDDIKAEIAYAFENTACDHIMDKLEKIFNLYKFKNFGVVGGASANLNLRS
                     RLQNLCQKYNANLKLAPLKFCSDNALMIARAAVDAYEKKEFVSVEEDILSPKNKNFSR
                     I"
     gene            15360..15875
                     /locus_tag="ACHFOB_000693"
     CDS             15360..15875
                     /locus_tag="ACHFOB_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HFN5799507.1"
                     /translation="MRKAFTILELVFVIVILGILAAIALPKMSSSKDEAEVSKSLNNI
                     KTLINDISIYTLKNDHLSSIKTMSNVSGVENVDLGNFNGTKEVNFRVGDDKECLKLVF
                     INKADFILMGISSNEASKNAIINAANQSHEDLENIDFTSSSSNKACVILSKNENFKNL
                     ASKTYLLIGGM"
     gene            15875..17125
                     /locus_tag="ACHFOB_000694"
     CDS             15875..17125
                     /locus_tag="ACHFOB_000694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5799508.1"
                     /translation="MIVSKTYEIDSCDDVELGIKRESKLEFKLCFDDEKEVKALVFII
                     PGLGGDADENYREHLAEFVAGEFNVAVVSVNYHCIGNRPQTGATFYLDDIDKLILKTS
                     CEAADIKLPYDVDKIQDYKQMSEIFHFVNNQIVEGKQKGNFTPNYFLNLHVSLQPTKN
                     EYQNFGIMQAQDLLNVALYLKKHAPFDTMGGGIPVIMIGSSHGGYLAHLAAKIAPWLV
                     DGVIDNSSYAKFLWKLVGFGKEVDFMEYSEFGTFDFFQNIRVCCSSKTFWTSSSSSNN
                     FFSMPRRMIRYILEPKHLEIQANYPKPCYTSYHSFYDKEIAPPDEKLELYKYLEQFGF
                     DADLYMIKNPDQVDGRFIKSLEHGMGMSIKTLISKELPLMLEKIKQNLKKDCKEKYIS
                     YPCEDLLYQFSEKDDKILLKIDKI"
     gene            17137..>17592
                     /locus_tag="ACHFOB_000695"
     CDS             17137..>17592
                     /locus_tag="ACHFOB_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HFN5799509.1"
                     /translation="MTILEKNIQALLSGVNEPLGNKLLNFIQNKTCSRFNIDENLNIF
                     DKTHNVFMYENLEEEINFFYQSILEKTPRYPFICIYGIGNALLIKNLAKHYKHLFVFE
                     SEIELFILALSMIDLSEELCSGKIYLVDIKEERVNLQLRILFDQNDMFLW"
BASE COUNT         6342 a         2424 c         2897 g         5929 t
ORIGIN      
        1 atctatgtta gaatcacaaa atttatttct gggaaattct gtgacattgt tgtttcattg
       61 aagattttaa gaaatgataa ttttaaggag gaaaattttg aagaaaactt cgaatctttt
      121 tactattttt cttgttttgc tttttgtttt ctttgcggtt gggttttata ccttttataa
      181 cgctaagggc acatcttatt taagcaatgc aagtgaatct tgtaataact gccatattat
      241 gaatgaagtt tataacgaat acatggcagg gccgcactct caaaaagtca aaggcgaacc
      301 aagagcaact tgcgtggatt gccatttgcc acataatttt gtagctaagt ggatagctaa
      361 ggctcaaagt ggtttagggc atgcttatgc ttttactttt aaacttgatg agttgcctac
      421 aaatttgagt gcgactgaaa aaagcagaaa aatggtgcaa gaaaactgca tacgctgtca
      481 tgcagatttt gctcaaacgg ctatcaatgc tacaacaaat ccacatgcag acaagtcatt
      541 aaattgtgct tcttgtcata aagatgttgg acataaacac ggaatttaat aaggagaaga
      601 tgaatgaaaa aaaatatttt acgcttaggt attgtcgttt tggttttact tatagcggga
      661 gttttatggc taaacaatga tatcaatcaa aaaaaagaag atgaagcaaa taaaaatgcc
      721 attgcagcaa atgctgattt ttctttgctt agtgatgatg atccaaattt tgaaaaatgg
      781 ggtaaggttt ttccagaaca actaaaaatg tatttaacgg ttgaaaaaga agagcctaag
      841 actactgaat ttggtggtaa tttagcttat tcaaaattga ttcgctttcc tcaattaacc
      901 atactttggg caggatatcc ttttagcctt gatttcaatg aagaaagagg gcatttttgg
      961 gttcaagtag atcaaatgaa aacagcaaga aacaacaaag attttcttaa tgcccatgga
     1021 cttgctgctt ttaaaggtca acctgcagct tgtatgaatt gtcatagtgg atggactcca
     1081 tggcttataa aaaatgttgc taaaggggat tttactgctt ttaactctac aaattattgg
     1141 actatgatta aaaatatccc agctgttgat ggtatagtag aaaattcacc tgaacatgca
     1201 ggcccacatg gtggtaaaag aatgggtgta acttgtgcag attgtcacaa tccaaatgat
     1261 atgagtttaa gacttactcg tccagcagct attaatgctt tagtttctag aggatatgaa
     1321 aaagatccag tacaaggcgt aaaagctaca agagaagaaa tgagaacttt agtttgctct
     1381 caatgccatg ttgaatacta ttttaaacca acagggaaaa aagtaaaagt aatgggtgaa
     1441 actattgtag atgatagttc taaaaaatgg tggaatggaa ctcagaaaaa ttatgatgag
     1501 tatgagtttt ggagagatgg taataaagct aaagagattg aaaccgatgg tatagtttta
     1561 acttttcctt ggagtgaatg gaaaaaagga caaccattta gaattgaaat gctagatgat
     1621 tattatgata aagttcgtgg agtatttgga gctgatttta ctcataaatt aacaggagcg
     1681 caaattatta aaattcaaca tccagaaagt gaactttata gtggcggtgt gcatgctgca
     1741 aatggggtaa gttgcgtgga ttgtcatatg ccttatgtta gagaaggagc taaaaaggtt
     1801 actcaacaca acatcacttc tcctttaaga gatattaact ctgcttgtaa gtcttgtcat
     1861 aaacaaagcg aagattattt aaaagctcaa gtgcttgaca tacaaaatag cgttgcgcat
     1921 gatcaaagaa ctgcagagta cgcaattgtt agtttgatta tggatactaa aaaactacgc
     1981 gatgagctag gtaatatgga aaaattccaa agcgatggaa aagctgatgc gaaaaaaatt
     2041 agtgaagagc taaaagaagt tttagaactt catcgtaaag ctcaaatgag agcggatttt
     2101 gttaatgctg aaaactcaac tggtttccat aatcctcgcg aagcttcaag aatgttattg
     2161 caagctgttg atatggcaag aatgggacaa actaaacttg tagaaattgc agcggcaaat
     2221 ggaattaaag attttaaaac ttcaaattta ggttttgaag atattcaaaa atttaatcca
     2281 ggagagcttt attataaagt agatgttaat aatcataaag ctggagagcg ttactatgca
     2341 gatgaaaaag atgttaatgg caatcctcca aaagaacttt tagagcatga taaagagctt
     2401 gctccttata attatcaagt gattgataaa aaataattct taagccctat aatcataggg
     2461 ctttttcttt tctttgtttt aaaaaatata aactttttat ttaaaattca cttttgcttc
     2521 actttgtttt gtcaaaatat cacaaatttt gataatcaaa aaggagttaa aatgatcaat
     2581 aaaaataaat tgtttagaca ggttcatatc tatcttagtt tgttcttttt gccttgtgct
     2641 ttgctttttg ctttaacggg tatagcatat atttttggta ttaatcaaga tgtgggctta
     2701 aaagttgagc agtatcaatt gtcaaaagtt atagaaagtg gtaaagaaag agaagcttta
     2761 atagagtatt taaaaacaaa tggtttaaaa gtaccatcta atacaaatat aattaaaagt
     2821 aaagataaag gtataacaat aggtggaact cattatagtg ctaatataac tcaaaattct
     2881 actaatgaat acaatattac cttaaaaaca agatctttac ttggagatat gattatgctt
     2941 cataaagata agggtgcttg gtatttttct gtgcttagcg taggctttgg tattacttta
     3001 tttatgcttt atatttcagg gcttatgatt actttgtttg caaataaaaa agatagaagt
     3061 aaacaatttg cagttcttgg agtaggggtt gttgtaactt tgcttttggc ttatcttagc
     3121 ctttgatttt tcctagcttt ttaagctagg tattatttat ttttttgtat aatcacactt
     3181 tactttattg gacagatggg tgagcggctg aaaccacacc cctgctaagg gtgcagatct
     3241 taacgggtct cgagggttca aatccctctc tgtccgccac taaaacttta ttgaaaattc
     3301 caagtattta tatatcaaca ttatatattt gaaaaaagaa taatctagaa ctataataaa
     3361 taaatattat tctaaaattg gaaaataatc cattagaaaa taagatattt tggaattatt
     3421 taagaaatta gatgaaaaag aatgctaata tggaagtaag aattctaaaa aaataaaata
     3481 taaaatcaat cccaaagatt acttttatat atgcctaaaa tcacaatttc atttttactt
     3541 ttatcgataa gataagggat aatataacct ttaaaaatca aatctcttat attttcatta
     3601 tcaaaagaca aagattttct atttttataa ggcataaaag aaagatttct acaaattgga
     3661 taaatatcat taagaaattc tttagcataa aaagaactat ctaagtttat aaaattaaca
     3721 atatgcctaa gctcattttt aaatttagga gttggaacaa ttttcattta ttctaaatct
     3781 tttctaatat cattaaaagt ttcatcaaaa tctaaagtct ttaatttacc ttgcttataa
     3841 agttctatat cctttttata accatcaatt cttattttat gttctaaata acttaaagca
     3901 agttctaaaa cttctttttc acttaaattg ttatctttac aataattagt taaaaaatgt
     3961 tgtgtttctt ttgaaaattc taagttcatt ttttactcct ttttaaagat ttattataac
     4021 ataaaaatat ttttatttaa aaaaaggttc aaatccctct ctgtccgcca ctaaaacttt
     4081 cttgaaaatc ccaaatattt tattaagtat taaagcaaga gactagccct tgcgaggttg
     4141 tattatttta cagcgttttt gatttctaaa atcatagttt ttaaagactc tagtccattt
     4201 ccacttgcta aataccagta ttctggatca agatagataa tttttttgtt ttgtgctgct
     4261 ttggttttag cgacaagcgc attatcgagt atgccttgcg ctcgttcttt gttgcctaca
     4321 atgatatttc tatcaataac aaaaatataa tcaggatttt tttctaatat aaattcagaa
     4381 ttgatacttt taccgtgagt gcctactttt atattctcat ctactgcgtt aatccctaaa
     4441 acatcgtgaa taatcccaaa gcgagattga ggaccaaagg ctgaaatttt gttagaattt
     4501 gtaagaataa taagagcttt tttatcttca tcaactatac ttttggcttt ttcaatttca
     4561 tttttaatat ctgaaatttt ttccaaagct tctttttcca aaccataaag ttttgcaacg
     4621 cttaagacat tgttttcaaa agagcttaaa aaatttgcat tatcaagacc tacaaataaa
     4681 gttggagcta tttcttttaa tttatcataa aatttacttt gtcgtccgga aatgatgata
     4741 agatcaggtt ttaaagcatt aatggcttca aaatcaactt gctgtactcc acctacacta
     4801 ggtttgtttt taaattgttg taggtatttt ggtaaatttt tagcaggaac gcctgcgact
     4861 ctatcgttta attttaaagc atcaaaagta tctaaaattc caagatctaa gatcactacc
     4921 ttagaaggat ttttagggat tttattttct cctagactat ccttcactaa aaaactatca
     4981 ccctcatcac tcatgctgat aggtaaaact ttcaccgtag cagtgttggt ttttgttgta
     5041 gaacttgcgt tgttttcatt tgagtttgaa ttacaagctg ttaagattag acttaaaaaa
     5101 aatgcaaaaa atgcaaaaac taaagatttt ttcatatttt ctccttttta aaaataaata
     5161 caaattttct taccatcaat ttgacttacg ggtatatcca tatcataaat ttgttttaaa
     5221 ttttcttgat tgatgatttc atcttttgaa ccttgtttta aaagcttccc atcttttaag
     5281 gctatgattt catcagaata aatcgaagca aaattaatat catgcaatac aacagctata
     5341 cttttgttaa agtctttgac taaatttttc attagttgca tgatttgtac gctatgcttc
     5401 atatcaagat tgtttaaagg ctcatcaaac attataaatt cagtatcttg agcgataatc
     5461 atggctataa aagctctttg tttttgtccg ccgcttaatg catctaaaaa ttcatttctt
     5521 aagttgctaa gtcccatgta ttctaaagct tcattgattt tgattttatc gtttgcatta
     5581 agtcttcctt gagaatgcgg aaaacgccca aaagcgacta attcttcaac ttttaatctt
     5641 aaattgatat tgttttgttg tttgagaatg gaaatttttt gtgctaagat ttgctcttta
     5701 tagtctttta aattcattcc atcgatataa atttctccac tactaggttt tatcaaacga
     5761 cttgctagag ctaaaagagt ggattttcca gcgccattgg ctcctattat agaagtgatt
     5821 ttgcctttat gaaaatcaag gctaagatct gaaataatgg ctttattatc ataaaatttg
     5881 gtgatatttt ttagtttaat cataatttat taccctttaa tacaagatag ataaaatata
     5941 tcccacctaa gaaattaata accacgctta tagtggcatt ataatcaaaa actctagaga
     6001 caaaaaatac ccctccaagc aaagctaaaa tgctaatgag tatgcaagcg cttagtaaaa
     6061 tactatgctt tgcagtttta aatagctcgt aagtgatatt taccaccaaa agccccaaaa
     6121 aggttatagg acctacaagt gcggtgctaa tagaagttaa aatagctatg ataatcatca
     6181 attgttttga aattttttga taatttatcc ctaaatttat cgctaaatct ttgcctaaat
     6241 ttaaaggatc taaaaatttc atgtagcgaa aaatccatat aaaacttaaa aagctaatga
     6301 tataagcaag aattaaaaca tcaaaagcaa tattatcaaa actagcaaac attcttcctt
     6361 gtattaccat gaattcatca gggtcgatta atacttcaaa aaaagagctt aaagtgctaa
     6421 aaagtgtccc aaaaactaag cctaaaagca tgataagata aatacttcta tcgctactaa
     6481 ataaaatttt ataaagtcct agtgaaaaaa ccaccataca aactagagtg attaaaaaat
     6541 tgatatcgtt tttataaaca cttaaattag ctgcaccaaa agaaaagata agagcacttt
     6601 gaagtaacat atataaagaa tctaatccta tgatggcagg ggttagaatt ttgttattgc
     6661 ataaagtttg aaagattact gttgaaacag cgatacaaat agctactatg ataatagctg
     6721 caatttgtaa aaaacgactt tttaaggcat actcatcaaa gccatttaaa cccacaagta
     6781 taaaaatccc tatcatacca agtgttaaaa agcttaaaat cagcattttt ttacgcataa
     6841 gctttccttt ttagcaaaag aaagataaag attaaagatc ctaaaacacc tgtagtgata
     6901 cttaaaggca tttcaaaagg aaagatgaca agtcttgaaa tgatatcgca aacaagtaaa
     6961 aacaaagctc cacaaagtgc tatatagata agattttttc taagattatc acctagataa
     7021 agagctacta aatttgggat aattagccct aaaaaaggga taattccaac gcttacaatc
     7081 actaagctag tgataatgct tacaatcatc aagcctaaaa ataatatccc attataagaa
     7141 attccaagat ttaaagctat atcttcgccc atgccaacta tggtgatttt atgagctaaa
     7201 aaataagcaa gtataaaaag tggtaaagaa atgtaaagca attcataatt tccctgcata
     7261 acatttgcca tactgccttg taaccagcct tggatatttt gtatataatt taaagcatag
     7321 gcaaaaaaag tagttatagc actaataatg cctccaaaca tcaagcctat caaaggtaca
     7381 aaaatcacat ctttgagttt gatttttctt aaaatttgga taaatataaa agaacccaaa
     7441 agtgcaaata cagaagcaat gatagcttgg gtgaaaaaag acgctccagc aaaaaatatt
     7501 aaagaaataa gtatgccaaa tttagcacaa tccatagtcc ctgccgtagt tggagaaacg
     7561 aatttatttt gcgtgagttg ttgcatgata agcccgcata tactaagact cattcccgtg
     7621 agtaaaattg ctataagtct aggaattctt gtgagggtta tgatttctag ttgagtggag
     7681 ttaagattaa gaatatcttt tacattgata ctgataactc ctataaataa acttatcatt
     7741 ccaaagaata aaagtaaagc tataagcact tttaaactca atatatgctt aaaaaacaaa
     7801 tctttcctta tagtaataat aattatcaaa aatgaaattg taatgaaatt tgttttaaga
     7861 aatgataaaa caactacaaa ggatatttta gtaagaaatc aaaaatccag tggaaagtct
     7921 ttgcaagtgt ttgttatagt ctataaggct ttctccatag ccattaaagt attgtaaata
     7981 ccaataaatt ccgttattaa aaatatcata tcctagatca acttgtatag cacctttgtt
     8041 atcgtggaat ttaagattgt ttcttagcat gagattgata aaataatcat cgcccaaata
     8101 cgctaaattc acatcaaaat ttcccatata atgcaagata gcaggattat catcatcttt
     8161 tttgctttca ggaattctat accaaaggcg tggaacaaat aaaaatttat tatataaaat
     8221 agccgtagat acataaattc tattccatga gcgagattgt aaattctcat ctcccttgcc
     8281 attgctttca tgcaatatac ctacgcgtag attgttaaaa aattcataat ctttaagata
     8341 caaaggaaaa tctataaaaa attctggttg atagttggtt tctctaaaag gagaagaatg
     8401 ctcataaatt tgccaccaag aagtttgagt ataggctata taatattttt catctagtcc
     8461 tagtaaattt tcaaaaagtc tttttttaac actaagttga aatttcgcct cactcttatt
     8521 attatttgtt cctaaagaat taaaactata agcaaaaggt aaaaaataat tcatcttata
     8581 agagctaatg ccaaggggat taaagctttc attttcacca agataattag ccaaagctaa
     8641 gcgagaaaag tcttgttttt cttctttttt tatagtgata gaattttgcg tttgtgttgt
     8701 ttggcttgag ttgttttgtt cttgagaaat caaaacagat gaatttttta aagcgagttt
     8761 tttgtaaatt tccatagctt ttttataatc gccttgtttt tcatactcta aagcttgctg
     8821 taaatcacta gcccatataa aaacgcataa gtttaaaaat aaagcaattt ttctcatttt
     8881 aactcgcttt taaatttttc atattcttca taaaaattaa gatttaaaaa agcatcttca
     8941 tcttcaaatt ctacaaattt ggttttaatc tcagaaaata aaagtcctat tttttgttca
     9001 tttttttcta agaaattttt acaagtttga gctaaagagc tgtgataaaa gccacataag
     9061 ggatgtttat gcaaaggggt ttttgctatg attattttat agttttgttc taaaaaagga
     9121 agcattttta aaagctcatt ttcacctact ttaggactat ctacacttaa aacaaaaaca
     9181 aattcatttt taaaatttga aagtatagag taaagcgcaa gcataggaga gtaaacttca
     9241 aattctaaag aatcttttat caagctaaaa tggttttcaa atttgtcttc tttcgcactc
     9301 acatagacat ttttaaaaat tttagaaaat ttatttactt gaaattgagt taaattttga
     9361 tttttaagaa tcaatttgct tttatcttgt cccatacgac tagatttacc accacataaa
     9421 atcacgcaat ttagctcatt aagctgcaca aatttccttt tttaatgtaa ttctaccaca
     9481 aattcgccaa aatattttat aatttctttt atgaaataca cagaactttt acaattgcaa
     9541 actttttttt ctcagtttaa aaaaatcgat tttatcaagc gtatcaatga taatattttg
     9601 gaattaagct ttgatagaga aagatttatt tttgatctca ctcgtgcaat gagtgtgatt
     9661 tatacagcta aatttaatgc aaaaaattat aatgcacctt ttgattttat gcttaaaaag
     9721 tattttagca atgcttttat aaaggaagtt aaagtccttg aaggcaatcg tattttatgt
     9781 tttagtgtaa aagctaataa ggcttataaa agctatgaga gcaaaattta ttttgaattt
     9841 acgggtaaaa ataccaatgt tattcttaca gatgaaaaag atttgatcat agaggcttta
     9901 aggcacattg ataaaagtta tcgtgtcata aaacctaatg tgattttaga gtctttaaag
     9961 ccttataaaa tggatgaaaa ttttgaagaa attaaagact ttgcagatta tttttctcgc
    10021 aaatttacaa gcatttatga gagtaaaatc aaacaaataa aaaatttaaa acttgcacaa
    10081 gtggataaaa aaatacaaaa tttacaagaa cttttttcta gtttagatga agaaaattct
    10141 ttactcttaa aagctttaga atacagaaaa agggctgatg tattgtttgc aaatttgagt
    10201 gttttaaaag attatgaaag ggaatttaag cttgatgatt ttgaaggcaa agagcttgaa
    10261 tttaagcttg aatttagtcc taagcaaagt gctaatttat attataaaaa tgctaaaaaa
    10321 ttagaacaaa aagctaaaaa tttaaacata caaagacaaa atttaaaaga aaagttagat
    10381 tttaccttga gtttgaaaga attattgctt caagctaaga gtgagataga gcttgaaatt
    10441 ttactaccta agaaaaatag caaaaaaaat caagatcata aacaagaaga tcttgtggca
    10501 aatttttatt ttaacgagtt taaaatttgc gtgggtaaaa atgaaaaagg caatgaattt
    10561 ttacttaaaa atgctaaaaa agatgatttg tggcttcatg taaggaatat tcctagtgcg
    10621 catactttga ttatatcaaa caagcaaaaa atcagccttg atgtgataga atttgctgca
    10681 aggctttgtg taagcttttc taagttaaag aaaggttcgt attgggtcga ttatacctta
    10741 aaaaattttg ttaaggttca gcaaaaggcg tttgtaaatt atacaaattt taaaagtatt
    10801 aatatcacaa aggattaaaa tgccagttag cccattagga aatgtcaatt atataaatca
    10861 aaatatggct tatccagcta cacaagcaag caatgagctt gcaaaagaag gttttgcagc
    10921 tacgctaaat atggctgaat ttaatgaaaa agaaaaaact ttgaacaagc ttgaaaaagt
    10981 caatgagact catgaaatca aagaagagat caaagaaaaa gccgaacaag aagaaaaaaa
    11041 gaaaaaacac aatcaagaag ctaaaaccag cgatgatgag aaaaatgaag aagatgagtc
    11101 taaagatcca aattttaaag acgcacaaag cattcatcgc ttagatatta gtatataagg
    11161 aaaaatatgt ttaatacaac tagaattatt tcagctcttg tgatgatagg ggctattatt
    11221 attatcgcgt tgattgatca attttttatc aattttatcg tttttgcggt tttattgtat
    11281 ttatctttta gtgaagcaaa aaaacttttt gctttagaaa atatttctat tatccctttg
    11341 gctatagctt ttattttggg aagtttatcg cataaagctt tgctttttgg gattttagct
    11401 ttgttattag tcgttggatc tttggtttat aaaaaggctt ccttaaaacc agctcttatt
    11461 tatatttatc ctagtttgcc tattttagca ctttggcaag tgtatttaga tcagggtatg
    11521 tttgcgcttt tttggcttat cattatcgtt gcagcttgtg atagtggggc gtattttatc
    11581 ggaaaactta tgggtaaaac tcctttttct ccaacaagtc caaacaaaac cttagaaggt
    11641 gttataggtg gcttgatttg tgcgagtgtt attggaacta ttttgggagt ttttgtttat
    11701 agtttttggc tttctttact ttgttcgttt tttgtagcga tttttgcagt gattggagat
    11761 ttgcttgaga gttattttaa aagagaagca ggtgtaaaag atagtggaga tcttatccct
    11821 ggtcatggag gtgtgcttga taggattgat gcagtgatca ttgctgcttt tgtgatggtt
    11881 gcttttttat gatacttttt ggaagcacgg gcagcatagg agtaaacgct cttaaacttg
    11941 ctgctttaaa aaacattcgt atttctgctt tagcttgcgg ggataacatc gctcttttaa
    12001 atgagcaaat cgcaaggttt aaacccaaat ttgttgccat aaaagattca aaaaataagc
    12061 atttagttaa acacaataga gtttttatag ggcaagaagg tttagagcaa attttaacag
    12121 aatgtcaaga caaactttta ctcaatgcca ttgtaggttt tgcaggactt aaaagcactt
    12181 taaaggctaa agagcttggc aaaaacatag ctttagctaa caaagaaagt cttgtagtag
    12241 ctgggagttt tttgaaaggg gctaaatttt tacccgttga tagtgagcat gcagctttaa
    12301 aatttttact cgaaggtaaa aaaaatatag caaaacttta tatcacagca agcggcggag
    12361 ctttttataa gtataaaatc aaagatttaa atcaagtcag tctcaaagat gctttaaaac
    12421 atcctaattg gaacatggga gcaaagatca ctatagatag tgcgactatg gcaaataagc
    12481 tttttgagat tatagaggct tatcatttat atgattttaa agaaattgat gctttaatag
    12541 aaccaagatc tttagtgcat gcaatgtgtg aatttaaaaa tggagctagc acggcgtatt
    12601 tttcaaaagc agatatgaaa ctagctattt cagatgctat atttgaaaaa caagatacgc
    12661 ctattttaga ggctattgat tttagcaaaa tacctgcttt aaaatttcat ccaatcagca
    12721 caaaaaaata tcctattttt aagcttaaaa atacattttt aaaagagcca aatttaggtg
    12781 ttatcatcaa tgctgctaat gaagttggtg tttataattt tttagaaaat aaaagtggat
    12841 ttttagatat cactaaatgc atttttaaag cccttgatca ttttggagtg cctaaaattt
    12901 caagtataga agaggttttt gagtatgatt ttaaaacaag agagtattta aggagttaaa
    12961 atgaaaattt ttttaacaat tttatttttt ataacaagca tttttgcttt agatctagac
    13021 tttagcgtag gagaaaatgg aaaaagtcta gatgataata atacagtttt aatttttggt
    13081 ggaattcaag gtgatgagcc tggtggattt catgcggcaa gtttgctttt gagtgattat
    13141 aatatcacca agggtaagat tatagtggct ccaaatttag cttttgatag cattatcaag
    13201 cgttcgcgtg ggaataatgg ggatttaaac cgtaaatttg caagcattag cccaaaggat
    13261 cctgattata aaaccgtgca acgcattaaa gagcttattt tacttcctga agttagtatg
    13321 gtgatcaatc ttcacgatgg ttggggtttt tataaaccta cttatatcga tgcgatgcaa
    13381 aatcctaagc gttggggaaa ttcaagcgtg attgacacaa gtgaaatcaa tgcaagcaaa
    13441 taccctgatc ttgaaaatat cgccactcaa accgtaaata gtgtcaattc ttcacttgct
    13501 gatccaaagc atgcttatca tctgaaaaac accaaaaccc aagagcttgg cgatatggaa
    13561 atgcttaaag ctttgactta ttttgtgatt tcaaatcaca aagccgcttt tgcaaatgaa
    13621 gcgagtaaaa atctgcctgt aaatttaaga gcttattatc atcttttggc aattgaaaat
    13681 tatttaaaaa ctgcaggaat tgaatttagc agagattttg aactcactcc acaaggggtt
    13741 gataaagcca taaataaaga gcttgaagta aagcttttta atgatagaat tttactttct
    13801 ttaaaaaatc caagaaaggt tatcaactat gtgccttttc cggtaaataa agagttaaat
    13861 tataacacaa gcaatgaact taccgctgtt atcgcagaag gaaattcctt ttatatccag
    13921 tatggcaatc gttttcaaac aagattatat cctgagtatt tagaatttag cgatgctttt
    13981 aatgaagtaa cttttcaagt tgatggcaat gaaaccaccg ttccttttgg aaccaaagta
    14041 aaagtcaaag agaattttct tattccaaag atagctaatg tgcgcgtaaa tatcataggc
    14101 tttgatcatg gaaaagatga aagtggtatt ttagttcata aaaaaaatat gcaaacacaa
    14161 tactctttag acatggcagg taaaatttat agagtggaat tttatgagtt aagaggagcg
    14221 aatttgcaac aacttttaga ggcaaatacc aatagcaagt tgatcaaaaa tgctaaaaat
    14281 ttggatttaa acactcttaa aatggcaaga tcaaaagata aattcttagg ttctatttta
    14341 gtggaatttg aatgaaaaat cttatcctag ctatagaaag ttcttgtgat gatagttcta
    14401 tagctatcat tgataaaaac acattagaat gtaaatttca taaaaaaatt tctcaagaat
    14461 tagatcatag tatctatggg ggagtggtgc ctgaacttgc tgcaagactt catagcgagg
    14521 ctttgccaaa gatacttaag caatgcaatg ggcattttaa aaatctttgt gccatagctg
    14581 tgacaaatga gcctgggctt agcgtttctt tgctcagtgg aatttctatg gcaaaaacct
    14641 tagcaagtgc tctaaattta cccttaatcc ctataaacca tcttaaaggt catatttata
    14701 gtcttttttt ggaagaaaaa atttctttag atatgggaat tttgcttgtt agtggtgggc
    14761 atactatggt gctatatctt aaagatgatg caaacttaga gcttttagca agcacaaatg
    14821 atgatagctt tggagaaagt tttgataaag tggctaaaat gatgaattta ggttaccctg
    14881 gtggggtcat catagaaaat ttagcaaaaa atgccaaact taaaaatatc tcttttaaca
    14941 tacctttaaa gcattctaaa gaactcgctt atagtttttc agggcttaaa aatgcagtgc
    15001 gtttggaaat tttaaagcat gaaaatttaa gcgatgatat aaaagcagaa atagcttatg
    15061 ccttcgaaaa tacggcttgt gatcatatca tggataaatt agaaaaaatt tttaatcttt
    15121 ataaatttaa aaattttggc gttgtaggcg gagctagtgc aaaccttaac ttgcgttcgc
    15181 gtttgcaaaa tttatgtcaa aaatataatg caaatttaaa actagctcct ttaaaattct
    15241 gctccgataa tgctttgatg atagcaagag ccgcagttga tgcttatgaa aaaaaggaat
    15301 ttgtaagcgt agaagaagat attttaagcc ctaaaaataa aaatttttca aggatataga
    15361 tgagaaaagc ttttactata ttagaacttg tttttgtgat tgttatttta ggaattttag
    15421 ccgctattgc tttaccaaaa atgagttcaa gcaaggatga agctgaagtt agcaagtctt
    15481 taaacaacat taaaactttg atcaacgata taagcattta tactttaaaa aatgatcatt
    15541 taagctctat aaaaacgatg agtaatgtaa gtggggttga aaatgtcgat cttggcaatt
    15601 tcaatggcac aaaagaagta aattttcgcg taggcgatga taaagaatgc ttaaaacttg
    15661 tttttataaa taaagctgat tttatactca tgggaatttc aagcaatgaa gcaagcaaaa
    15721 atgctatcat caacgcagcc aatcaaagcc atgaagattt agaaaatata gactttacaa
    15781 gctcttctag taacaaagct tgcgtgatct taagtaagaa tgaaaatttt aaaaacctag
    15841 cgagtaaaac ttatctttta atagggggaa tgtaatgata gtgagtaaaa cttatgagat
    15901 tgactcttgt gatgatgtag aacttggtat aaaaagagaa tcaaagcttg aatttaagct
    15961 ttgttttgat gatgaaaaag aagtaaaagc tttagtgttt attatccctg ggcttggtgg
    16021 agatgcggat gaaaattacc gtgaacactt agctgaattt gtagcaggcg aatttaatgt
    16081 ggctgtagtg agtgtgaatt atcattgtat aggtaatcgt cctcaaacag gtgcgacttt
    16141 ttatctagat gatatagata agcttatttt aaaaacaagt tgtgaagccg cggatatcaa
    16201 gcttccttat gatgttgata aaattcaaga ctacaaacaa atgagtgaaa tttttcattt
    16261 tgtaaataat caaatagttg aaggcaagca aaaaggtaat tttacaccaa attatttttt
    16321 aaatttgcat gtgagtttgc aaccgacaaa aaacgagtat caaaattttg ggatcatgca
    16381 agctcaagat cttttaaatg tcgcacttta ccttaaaaaa cacgctcctt ttgatactat
    16441 gggggggggt ataccagtta ttatgatagg tagttctcat ggagggtatt tagcacattt
    16501 agccgctaaa attgctcctt ggcttgtaga tggagtgata gataattcaa gttatgctaa
    16561 atttctttgg aagcttgttg ggtttggtaa agaagttgat tttatggaat attcagagtt
    16621 tggtactttt gatttttttc aaaatattag agtttgttgt tctagcaaaa ctttttggac
    16681 aagtagttca agctcaaata attttttttc aatgccaaga agaatgataa gatatatctt
    16741 agaaccaaag catcttgaaa ttcaagcaaa ttatccaaaa ccatgctata caagctatca
    16801 ttctttttat gataaagaaa tagctccacc tgatgaaaaa ttagaacttt acaaatattt
    16861 agaacaattt gggtttgatg cagatcttta tatgataaaa aatccagatc aagttgatgg
    16921 tagatttatc aaaagtttag aacatggcat gggaatgtct ataaaaactt taatttccaa
    16981 agaacttcct ttaatgttag aaaaaataaa acaaaatcta aaaaaagatt gcaaagaaaa
    17041 atatatctct tatccttgtg aggatttgtt gtatcaattt agcgaaaaag atgacaaaat
    17101 attgttaaag atagataaaa tttaaggaaa actttcatga ccatactaga aaaaaacata
    17161 caagctttat taagcggagt aaatgaaccc ttaggaaata aacttttaaa tttcatacaa
    17221 aataaaactt gttctcgttt taacatagat gaaaatttaa atatctttga taaaactcat
    17281 aatgttttca tgtatgaaaa cttagaagaa gaaataaatt ttttctatca aagtatttta
    17341 gaaaaaactc ctagatatcc ttttatatgt atttatggta taggcaatgc tttactgatt
    17401 aaaaatttag ctaaacacta taaacatctt tttgtatttg aaagcgaaat agaacttttt
    17461 atcctagctt taagcatgat agatttgagt gaggagcttt gtagtggaaa aatttatctt
    17521 gtggatatca aagaagaaag agtaaattta caacttagga tactttttga tcaaaatgat
    17581 atgtttttat gg
//
LOCUS       DAZBIH010000025        17178 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.025, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000025 DAZBIH010000000
VERSION     DAZBIH010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17178
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.025"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            70..1866
                     /gene="lepA"
                     /locus_tag="ACHFOB_000696"
     CDS             70..1866
                     /gene="lepA"
                     /locus_tag="ACHFOB_000696"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor 4"
                     /protein_id="HFN5799510.1"
                     /translation="MSVKNIRNFSIIAHIDHGKSTLADRIISECGAISDRQMSSQVMD
                     TMDIEKERGITIKAQSVRLNYKFNNENFVLNLIDTPGHVDFSYEVSRSLASCEGALLV
                     VDASQGVEAQTIANVYIALENNLEIIPVINKIDLPNADVEKVKHEIEHIIGIDCKDAI
                     CVSAKTGVGIKELIETIITKIPAPKTDDEAPTKALIYDSWFDNYLGALALVRIYEGSI
                     AKNDEVLVMSTDKKHIVQDLFYPHPLSPIKTQSLQSGEVGVVVLGLKTVGDVQVGDTI
                     TLVKNKAKEAIGGFEKAKAFVFAGLYPIETDKFEDLRDALDKLKLNDSSITYEPETSL
                     ALGFGFRVGFLGLLHMEVIKERLEREFNLDLIATAPTVTYEIYQTDGELIKIQNPSEL
                     PPVNKIDHIKEPYVKATIITPSEFLGNLITLLNRKRGVQVKMDYITPERVLLEYDVPL
                     NEIVMDFYDKLKSLTKGYASFDYEPIEFRVGDLVKLDIKVAGENVDALSIIVPNEKAQ
                     SKGRELVSAMKEIVPRQLFEVAIQASIGNKIIARETVKSMGKNVTAKCYGGDITRKRK
                     LLEKQKEGKKRMKAIGKVNLPQEAFLSVLKID"
     gene            1943..2587
                     /gene="mapA"
                     /locus_tag="ACHFOB_000697"
     CDS             1943..2587
                     /gene="mapA"
                     /locus_tag="ACHFOB_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="outer membrane lipoprotein MapA"
                     /protein_id="HFN5799511.1"
                     /translation="MFKKFLIFIVPILFLSACATKQDTFAQVNQISKNSQCSSCESPG
                     GFEAKIKGLLYISDVGIQCCANKRTLDTGIALKKVYLHRFYDLKEEQKVLNAKGKKLF
                     VDVNFNAVFYTYLKQELEARGIVVLDNNDQNSPYVSKIDLEFISYGATQDAIGLHSKL
                     VGVLQVSDINKNKKFTIRTKQDVQGFDDLKETTFYTHLLIKQMANKAASLISEL"
     gene            2584..3159
                     /locus_tag="ACHFOB_000698"
     CDS             2584..3159
                     /locus_tag="ACHFOB_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HFN5799512.1"
                     /translation="MRCINCGAFALLCFCELCELELSEFSLNVRKLDNNFKVYSFYKY
                     HEIQHLLHSKHYFYGYFVYKMLAKLSFAKFKDFFDPRMTINVIALDDKVEDMLYSHSA
                     ILARYLKTKFVKPVFNVLKAQNHIKYSGKSLEFRQKHKRNYKLLKTIHEPVILVDDIV
                     TTGSSLLEAKKVLEENKISVLFALVLADAKV"
     gene            3200..5788
                     /gene="gyrA"
                     /locus_tag="ACHFOB_000699"
     CDS             3200..5788
                     /gene="gyrA"
                     /locus_tag="ACHFOB_000699"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002811340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009330 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) complex [Evidence
                     IEA];
                     GO_function: GO:0003916 - DNA topoisomerase activity
                     [Evidence IEA];
                     GO_function: GO:0003918 - DNA topoisomerase type II
                     (double strand cut, ATP-hydrolyzing) activity [Evidence
                     IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit A"
                     /protein_id="HFN5799513.1"
                     /translation="MENIFSKDSDIELVDIENSIKSSYLDYSMSVIIGRALPDARDGL
                     KPVHRRILYAMQNDEAKSRTDFVKSARIVGAVIGRYHPHGDTAVYDALVRMAQDFSMR
                     YPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSHELLKDIDKDTVDFVPNYDGSESEPD
                     VLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELIDGLLYLLDSKDASLEEIMQFIKGP
                     DFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEKKTNKDVIVIDELPYQTNKARLIE
                     QIAELVKEKQIEGISEVRDESNKEGIRVVIELKREAMSEIVLNNLFKSTTMESTFGVI
                     MLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQKARARAHILEGLKIALDNID
                     EVIALIKNSSDNNTARDSLVAKFGLSELQANAILDMKLGRLTGLEREKIENELAELMK
                     EIARLEEILKSETLLENLIRDELKEIRSKFDVPRITQIEDDYDDIDIEDLIPNENMVV
                     TITHRGYIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQL
                     YWLKVYKIPEGSRTAKGKAVVNLINLQAEEKIMAIIPTTDFDESKSLCFFTKNGIVKR
                     TNLSEYQNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDE
                     NLENEESVSTQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAV
                     VIENDEQEILSISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETM
                     DLMALTSSGKMIRVDMQSIRKAGRNTSGVIVVNVENDEVVSIAKCPKEENDEDELSDE
                     NFGLDL"
     gene            5857..6372
                     /gene="flgP"
                     /locus_tag="ACHFOB_000700"
     CDS             5857..6372
                     /gene="flgP"
                     /locus_tag="ACHFOB_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly lipoprotein FlgP"
                     /protein_id="HFN5799514.1"
                     /translation="MKKIYFMLAIAGIFAGCVPSANSATKNSSANSTAPSQDVIVQKV
                     DKDDVRDIIREEKMLAPDASETELSFTAVGEGIAPMNTVSTAQALALAKRAAITDAYR
                     QLASKLYGVKVNGKDTVKDAMLRSSTITAQVNGLIKNASIIDENFNQGLYRVNLELKI
                     DADKWKELFAY"
     gene            6348..6797
                     /gene="flgQ"
                     /locus_tag="ACHFOB_000701"
     CDS             6348..6797
                     /gene="flgQ"
                     /locus_tag="ACHFOB_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FlgQ"
                     /protein_id="HFN5799515.1"
                     /translation="MERIVCLLIFLSFKLFAQDEFIFWAELSSKNFILFHQNQNLSLA
                     MTQSENVEEQWVCEISYSDQDLKVLPRTSLALIDDNMPKTIKFNFLNSHKDELSDCFI
                     GARISVKDIVNTDLLHAQSETYVKILPLRFTVEFGEQNAIIYYLKKK"
     gene            6854..8155
                     /gene="flgR"
                     /locus_tag="ACHFOB_000702"
     CDS             6854..8155
                     /gene="flgR"
                     /locus_tag="ACHFOB_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system response
                     regulator"
                     /protein_id="HFN5799516.1"
                     /translation="MNLVIVEDDINMRKSLEIALAEYEEFNIKSYKSATEALKKIDDN
                     TDLIITDINMPGIDGIEFVKACENKYDFIIMTGNATLSRAIEAVRLGVKDFLTKPFDV
                     DTLVEAIKRAKIIREKTANKKSKKNEKKEENKDFFSTSPNLEKTLNLSQKAAKTDASV
                     MFFGESGVGKEVFSRYIHTHSKRSNKPFVAINMAAIPANLIESELFGFEKGAFTDANA
                     TKIGLFEMANEGTLFLDEIGEMPYEIQAKLLRALQEKEITRLGSTKSIKIDVRIISAT
                     NANLDEKIKNGEFRSDLYYRLNTVPVNIPPLRERKEEILGIAQKVLEDTCKEYDFKEK
                     QLSQEAKNALLEYDFPGNIRELISVVQRACILSENDEISSEDLFLEARSIKKDVKNLE
                     KELICEVLLSVDYDKDQASQILGMDIKILNEKIKKYQIKDR"
     gene            8155..9186
                     /locus_tag="ACHFOB_000703"
     CDS             8155..9186
                     /locus_tag="ACHFOB_000703"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0016620 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors, NAD or NADP as
                     acceptor [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0008652 - amino acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HFN5799517.1"
                     /translation="MSKKQKIAIVGATGAVGEELLNVLDELDFPVESILPLASAKSVG
                     SEVEFKGKAYKVKELTENVFKENPIDIAFFSAGGSVSEKYAKFAVESGAVVIDNTSHF
                     RMEKDVPLVVPECNPEDIKDWKKTGIIANPNCSTIQMVQVLKPLNDAFNLKRVDVSTY
                     QAASGAGKEGMQELVEAMQSFFAFKLDEFKSQTFPYTLALNLIPQIDVFMDNDYTKEE
                     LKMVNETQKILHKNLEVSATCVRVPVLRSHSEAITMHFEKEIDVKKAKEILEKAPSVV
                     VIDDPKNKKYPMPLMTSDTNETYVGRIRADVYDKKILHLWCVADQIRVGAATNAVRIA
                     QKWLELKNK"
     gene            9195..9701
                     /locus_tag="ACHFOB_000704"
     CDS             9195..9701
                     /locus_tag="ACHFOB_000704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqhA family protein"
                     /protein_id="HFN5799518.1"
                     /translation="MLEKIFESLLVRSRIVTILPVIFGLIGAFVLFFIASYDVLKVIF
                     YTYNYFFDAGSNVDLHEDVVALIIGAVDLYLMALVLFIFSFGVYELFISEIEEFKQTK
                     QSKVLEVHSLDQLKDKLAKVIIMVLVVNFFQRVLQMKFATPVDMAFLAGSILALCVGL
                     YFLHKGGH"
     gene            9778..9945
                     /locus_tag="ACHFOB_000705"
     CDS             9778..9945
                     /locus_tag="ACHFOB_000705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mini-MOMP protein"
                     /protein_id="HFN5799519.1"
                     /translation="MILNHFVFAAPLDEVFKDIEVSGTVRYRYDIKKEKKYNKKTHRY
                     QNKTQTEITIK"
     gene            9954..10388
                     /locus_tag="ACHFOB_000706"
     CDS             9954..10388
                     /locus_tag="ACHFOB_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN5799520.1"
                     /translation="MIIRWLFISSIFVVALFGINLKSFFTYTFDANKQYDMEKAKALY
                     FQNKCNTCHGDNAEKSVIGSRILKDMSPEDIKGALIGYTLDSSSSTTASQMAFYARNL
                     SHEDIDNIIAYIKGGNFALDLQVKDLLEEEPAQKTKHNIFLK"
     gene            10419..11534
                     /locus_tag="ACHFOB_000707"
     CDS             10419..11534
                     /locus_tag="ACHFOB_000707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN5799521.1"
                     /translation="MKKLTLTLSVLTMVNCLYAKDINIGVVLPLTGTVAAYGQDVFNG
                     IELANKLQPKLSNGDVIKLITIDTKGDKLETSNGVNRLIATDKVLGIIGEATTPNTIQ
                     AISIAEEKKIPLIAPVASGDKLLDKKKYASRVCFKDSFQGDKFATYVSKDLGLKNAVI
                     IIDQSNVYSLGLARAFENSFKNNGGKIIKKLVINSGDKDFRAVVSQLKSLNPDFVYMP
                     IYHPEAALIARQARQIGFDKLLAAGDGVNNQTFIDLGGSAVNGVIFTDSFDYSNPSTQ
                     LGKDFVAAYEKVKGTKELPAFSAMGADAYFVMLNAMNACVDNLSSECINSKIHQTKDF
                     QAVGGVISIDESGNAIRSVVIKEIQDQKQNYKTIINP"
     gene            11556..12665
                     /locus_tag="ACHFOB_000708"
     CDS             11556..12665
                     /locus_tag="ACHFOB_000708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN5799522.1"
                     /translation="MKKSLILASILSLSLSAAEVKIGVVLPLSGATAAYGQSALEGIK
                     LANSMQSTLSNGDKVSLAIIDTKGDKLESSSGANRLVSQDKVIGLIGEMVTANTLQVM
                     RVAEDNKIPLIAPAATGDRLLDKKIYSSRVCFMDSFQGSSLAKYVFSKLNYKSAVIVV
                     DQSTDYSLGLAKAFEKQYKSNGGQILRILRVNSGDKDFRAIVAQVKSLNPEFIFLPLY
                     YSEASLFARQSKLAGLNIPMGSADGVADQTFISLAGDASEGYIFTDSFDANNPTTKLS
                     KEFISVYEKAKGTKEVPNFSAMGADAYFVMLNAMNACVENLTSKCVNEKIHQTKNYQG
                     VSGVISIDQTGNATRSVVVKEIKNQKQNYKDIINP"
     gene            12684..13580
                     /locus_tag="ACHFOB_000709"
     CDS             12684..13580
                     /locus_tag="ACHFOB_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_function: GO:0015658 - branched-chain amino acid
                     transmembrane transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HFN5799523.1"
                     /translation="MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDI
                     MMVGAYAALFCMTNLNVPFLGALSLAMIFAACVGIATDRIAYKPLRQAPRISLLITAI
                     GISFFLQNLFNILFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLW
                     ILYKSKYGIAIRALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVE
                     PTMGTLIGLKAFAAAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSGFKDAFAFIF
                     LVFILLFRPTGILGINFEKSRF"
     gene            13580..14632
                     /locus_tag="ACHFOB_000710"
     CDS             13580..14632
                     /locus_tag="ACHFOB_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid ABC transporter
                     permease"
                     /protein_id="HFN5799524.1"
                     /translation="MMVRIKVSHLIFLIASIVFIFVSPYIFGDYGLNIVNQIAIFIIL
                     AVSYNLINGVTGQFSLEPNGFVAIGAYAAALVLLSADAKNDQFFLDGPSSFILAIHSN
                     SFILALIVAGICSSLLALILAFAVFRVRGDYLAIVTLGFGIIIKIAAINFPSITNGSR
                     GLVDIPQFSTIYWTGGIAIVAVILILNIVYSKYGRAMKAIRDDEDAASAMGINTFWIK
                     TLAFSTSAFLEGVGGGLLACLLTTVSPTQFDFLLTFQLLIIIVLGGLGSTTGAIIGAI
                     LVIGGSEWLRFLDELNIKIDSLNLDIQSMPGLRMVVFSIVLILVMLFARKGIMGYYEL
                     SDVIRGIKKRFKRSEK"
     gene            14629..15399
                     /locus_tag="ACHFOB_000711"
     CDS             14629..15399
                     /locus_tag="ACHFOB_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799525.1"
                     /translation="MILELKHISKSFGSVKAINETSFKINEGEIFALIGPNGAGKTTL
                     FNIITGNYKPSSGSVEFLGERIDHLKPHKIVHLGIARTFQNIRLFSSMNVLENVLIGF
                     NKQMKYNIFEAFLHLGRFGKIEQVFKEKAYAILEELGIAEFAYEKAASLSYGQQRKVE
                     IARAMATQPRLLLLDEPAAGMNSSESDELAELIFKLRKDYKISVLLIEHDMKFVNKLC
                     DRVLVLDYGKTIFEGKLCDAVNHKEVIAAYLGDFDANS"
     gene            15386..16081
                     /locus_tag="ACHFOB_000712"
     CDS             15386..16081
                     /locus_tag="ACHFOB_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799526.1"
                     /translation="MLIVKDLHVYYGLIEAVKGIDFKVETGHIVSLIGSNGAGKTSTL
                     NALLNSVKRTGEVNFLGYDTKRHLTHTLVQKGIALVPEGRRVFINLSVEENLKIGAFN
                     NAENYEHLREQMYKLFPRLTSKKHALAGTLSGGEAQMLAISRALMSEPKLLMLDEPSL
                     GLAPKIVGEVFDIIVRLKEEGITILLVEQNAYSALKISDYAYVLENGRIVMENEAKNL
                     IGDDEIRKKYLGL"
     gene            16099..>17178
                     /locus_tag="ACHFOB_000713"
     CDS             16099..>17178
                     /locus_tag="ACHFOB_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C biogenesis protein"
                     /protein_id="HFN5799527.1"
                     /translation="MKNIIKSIGDLRVSVVLFLLFALFCALATFIESAYGTPTAWAMV
                     YDTFWFEYIQLLLGINLLCGMFRYKMFGLKKLPLMIFHISFLFILVGSAMTRYAGFEG
                     ILPIREHTQNSLIESSKTSLRISAIKDGERYSAVNDRYIGNLPFANSFKLKLNLGDDQ
                     AVLKYKDLILNAHYTYKENNNSDPLLVLMLSQKGSQGVDVKFEKGEVKNIEGVNFAFM
                     NDNVKAPFVKIDENLTLSSSENLHFLSMLDGQNLDLKIGEKANAKERRLYEIKDISFV
                     VKAASLHAQEALEGSNRPQDESFWLWFKSAWLEVGRTMLISTFGEPQNWKNSLLLHFK
                     DFALSNENKNLELTGSNALKLELSYK"
BASE COUNT         5930 a         2040 c         3342 g         5866 t
ORIGIN      
        1 aatttatttg ttttaaacat aaattttgtt aaaatcctag ctttaaaatt ttatatttag
       61 gatgaaattt tgtcggtaaa aaatattaga aatttttcta ttatagctca tatagatcat
      121 ggaaaatcta ctcttgcaga taggattatt agcgagtgtg gtgctattag cgataggcag
      181 atgagttcac aagttatgga tactatggat atagaaaaag agcgtggtat caccataaaa
      241 gcacaatcag tgcgtttaaa ttataaattt aataatgaaa attttgtttt aaatcttatt
      301 gatactcctg gccatgtgga tttttcttat gaagtgagtc gttctttggc aagttgtgaa
      361 ggggctttgc ttgtagtaga tgcttctcaa ggtgttgaag cacagactat agctaatgtt
      421 tatatagcgc ttgaaaataa tcttgaaatc attcctgtga ttaataaaat cgatttacct
      481 aatgctgatg ttgagaaagt aaagcatgaa atcgagcata ttataggtat agattgcaaa
      541 gatgcaattt gcgtgagtgc aaaaacagga gtgggtataa aagagcttat agaaacaatt
      601 attactaaaa tccctgcacc aaaaacagat gatgaagctc ctactaaggc tttaatttat
      661 gattcttggt ttgataatta tttgggtgct ttggctttgg ttaggattta tgaaggaagt
      721 attgctaaaa acgatgaagt tttagtcatg agtacggata aaaaacatat agttcaagat
      781 cttttttatc cccacccttt aagtccaatt aaaactcaat ctttacaatc aggcgaagta
      841 ggtgtggtgg ttttagggct taaaaccgta ggtgatgtac aagtaggcga taccatcact
      901 ttggtaaaaa acaaagctaa agaagccata ggtggttttg aaaaggctaa agcttttgtg
      961 tttgcgggac tttatcctat agaaacggat aaatttgaag atttaagaga tgctttggat
     1021 aaattaaagc ttaatgatag ttctattact tatgagcctg aaacttcttt ggccttaggc
     1081 tttggtttta gggtaggatt tttagggctt ttacatatgg aagttatcaa agaaaggctt
     1141 gagagagaat ttaatcttga tttgattgct acagctccaa ctgtgactta tgaaatttat
     1201 caaaccgatg gagagcttat taaaattcaa aatcctagcg agcttcctcc tgttaataaa
     1261 atcgatcata taaaagagcc ttatgttaaa gctactatca ttactccaag tgaattttta
     1321 gggaatttaa tcactctttt aaatcgcaaa agaggagtgc aggttaaaat ggactatatc
     1381 acacctgagc gtgttttgct agaatatgat gtgcctttaa atgagattgt gatggatttt
     1441 tatgataaat taaagtcctt aacaaaaggt tatgcgagtt ttgattatga gcctatagaa
     1501 tttagagtag gggatttggt aaaacttgat attaaggtag cgggtgaaaa tgttgatgcg
     1561 ctaagcatta tcgtgcctaa tgaaaaagcg caaagtaaag gaagagaact tgttagtgct
     1621 atgaaagaaa tagttcctag acagcttttt gaagtggcca ttcaagcaag tattggaaat
     1681 aaaatcatcg caagagaaac tgttaaatcc atgggtaaaa atgtgacagc aaaatgttat
     1741 ggtggggata ttactagaaa aagaaagctt ttagaaaagc aaaaagaagg taaaaaaaga
     1801 atgaaagcta taggtaaggt aaatttacct caagaggctt ttttgagtgt tttaaagata
     1861 gattgatgat aaatttaaaa cttggcttga aatttgcttg tatttttaat acaattttaa
     1921 aataattttc taaggagaaa aaatgtttaa aaaatttttg atttttatag tgcctatttt
     1981 atttttgagt gcttgtgcaa ctaaacaaga tacttttgct caagttaatc aaatttctaa
     2041 aaattctcaa tgcagttctt gtgaaagtcc tggtggtttt gaagcaaaga ttaaagggct
     2101 tttatacatt agcgatgttg gaattcaatg ttgtgccaat aaacgcactt tagacactgg
     2161 tattgctttg aaaaaggttt atttacatag attttatgat ttaaaagaag agcaaaaggt
     2221 tttaaatgct aaagggaaaa agttatttgt tgatgtgaat tttaatgcgg tattttatac
     2281 ttatttaaaa caagaacttg aagctagagg aatagttgtg cttgacaata acgatcaaaa
     2341 ttcaccttat gtgagtaaga ttgatttaga atttatatct tatggagcaa ctcaagatgc
     2401 tataggatta cattcaaaac tagtaggagt tttacaagtt agtgatataa ataaaaataa
     2461 gaaatttaca atccgcacca agcaagatgt acaaggtttt gatgatttaa aagaaacaac
     2521 tttttatact catttgttaa taaaacaaat ggcaaataaa gcagctagtt taatctctga
     2581 actttgaggt gtataaattg cggagctttt gctctgctct gcttttgtga attatgcgag
     2641 ctagagcttt ctgaattttc cttaaatgta agaaagcttg ataataattt caaagtctat
     2701 tctttttata aataccatga aatacaacac ttgcttcact ctaaacatta tttttatggt
     2761 tattttgttt ataaaatgct tgctaaatta agttttgcaa aatttaaaga tttttttgat
     2821 cctagaatga caattaatgt tatagcttta gatgataagg ttgaagatat gctttattcg
     2881 cattctgcta ttttagctag atatcttaaa acaaaatttg taaaacctgt ttttaatgtt
     2941 ttaaaagcac aaaatcatat taaatattct ggaaaaagtt tagaatttcg tcaaaaacat
     3001 aaaagaaatt acaaactctt aaaaaccatt cacgaacctg taattttagt agatgatatt
     3061 gtaacgactg gttctagcct tttggaagct aaaaaagttt tagaagaaaa taaaatttct
     3121 gtactttttg ctcttgtttt agctgatgca aaagtttaat atgctataat caaaactttg
     3181 aactaataga aggattttta tggagaatat ttttagcaag gattctgata ttgaacttgt
     3241 agatatagaa aattctataa aaagtagtta cttagactat tctatgagtg ttattatagg
     3301 tcgtgctttg cctgacgcaa gagatggttt aaagcctgtt catagaagaa ttttatatgc
     3361 tatgcaaaat gatgaggcaa aaagtagaac agattttgtc aaatcagccc gtatagtggg
     3421 tgctgttata ggtcgttatc atccacatgg agatacagca gtttatgatg ctttggttag
     3481 aatggctcaa gatttttcta tgagatatcc aagtattaca ggacaaggca actttggatc
     3541 tatagatggt gatagcgctg ctgcgatgcg ttatactgaa gcaaaaatga gtaaactttc
     3601 tcatgagctt ttaaaagata tagataaaga tacggtcgat tttgttccaa attatgatgg
     3661 ttcagaaagt gaacctgatg tcttaccttc tagggttcca aatttattat taaatggttc
     3721 aagtggtata gctgtaggta tggcgacaaa catcccacct catagtttaa atgagttgat
     3781 agatggactt ttatatttgc ttgatagtaa agatgcaagc ttagaagaga ttatgcagtt
     3841 tatcaaaggt ccagattttc caacaggtgg aataatttat ggtaaaaaag gtattataga
     3901 agcttatcgc acagggcgtg gtcgcgtgaa agtgcgcgct aaaactcata ttgaaaaaaa
     3961 gacaaataaa gatgttattg ttatagatga gcttccttat caaaccaata aagctaggct
     4021 tatagagcag attgcagagc ttgttaaaga aaagcaaatt gaaggaatat ctgaagtaag
     4081 agatgagagc aataaagaag gaatccgcgt tgttatagag cttaaacgtg aggctatgag
     4141 tgaaattgtt ttaaataatc tatttaaatc tactactatg gaaagtactt ttggtgtgat
     4201 tatgttggca attcacaata aagaacctaa aattttctct ttgttagaac ttttaaatct
     4261 tttcttaacc catagaaaaa cagttattat tagaagaacg atttttgaac ttcaaaaggc
     4321 aagagcaaga gctcatattt tagaaggtct taaaattgca cttgataata tagatgaagt
     4381 gattgctttg attaaaaata gttctgataa taataccgca agagattctt tggtagctaa
     4441 atttggtctt agtgagcttc aagccaatgc tattttagat atgaaacttg gtcgtttaac
     4501 aggacttgaa agagaaaaaa tcgaaaatga acttgcagaa ttaatgaaag aaattgcaag
     4561 acttgaagaa attttaaaaa gtgaaacctt gcttgaaaat ttaattcgcg atgaattaaa
     4621 agaaattaga agtaaatttg atgtgccacg tattactcaa attgaagatg attatgatga
     4681 tattgatatt gaagatttga ttcctaatga aaatatggtt gtaactatta cgcatcgtgg
     4741 ttatattaag cgtgtgccta gtaaacaata tgaaaagcaa aaacgaggcg gaaaaggaaa
     4801 attagccgtt acgacttatg atgatgattt tatagaaagt ttctttacgg caaatacaca
     4861 tgatacactt atgtttgtaa cagatcgtgg acagctttat tggcttaaag tttataaaat
     4921 tcctgaaggc tcaagaacgg ctaaaggaaa agcagtggta aatcttatta atttacaagc
     4981 tgaagaaaaa atcatggcta ttattccaac cacggatttt gatgagagta aatctttatg
     5041 tttctttact aaaaatggta ttgtaaagcg tacaaatttg agtgaatatc aaaatatcag
     5101 aagtgtagga gttagagcga tcaacttgga tgaaaatgat gagttggtaa ctgctattat
     5161 tgttcaaaga gatgaagatg aaatttttgc cactggtggt gaagaaaatt tagaaaatca
     5221 agaaattgaa aatttagatg atgaaaatct tgaaaatgaa gaaagtgtaa gcacacaagg
     5281 taaaatgctc tttgcagtaa ccaaaaaagg tatgtgtatc aaattcccac ttgctaaagt
     5341 gcgtgaaatc ggccgtgtaa gtcgtggggt gacggctatt aagtttaaag agaaaaatga
     5401 cgaattagta ggtgcagttg ttatagaaaa tgatgagcaa gaaattttaa gcataagtgc
     5461 aaaaggtata ggaaaacgca ccaatgctgg agaatataga ttgcaaagca gaggtggtaa
     5521 gggtgtaatt tgtatgaaac ttacagaaaa aaccaaagat cttattagcg tagttatagt
     5581 agatgaaact atggatttga tggctcttac aagttcaggc aagatgatac gtgttgatat
     5641 gcaaagcatt agaaaagcag ggcgtaatac aagtggtgtc attgtagtta atgtggaaaa
     5701 tgacgaggtg gttagcattg ctaagtgtcc taaagaggaa aatgatgagg atgagttaag
     5761 cgatgaaaac tttggtttag atttgtaata agtttaaagt tggaacgctt attgcttttt
     5821 attttttact aattacaata ttttgaaggt gtaaaaatga aaaaaattta ttttatgcta
     5881 gcaatagcag gaattttcgc tggttgtgta ccaagtgcaa acagtgcaac taaaaattca
     5941 agtgcaaata gcactgcccc atctcaagat gttatcgtgc aaaaagtcga taaagatgat
     6001 gtgcgtgata ttatcagaga agaaaaaatg ttggctccag atgctagcga aacggaactt
     6061 agttttacag cagttggtga agggattgct ccgatgaata cagtttctac tgctcaagcc
     6121 ctagctttag caaaaagagc agcgattaca gatgcttaca gacagcttgc aagtaagctt
     6181 tatggtgtga aagtgaatgg taaagacact gtaaaagatg caatgcttag aagttcaact
     6241 attactgcgc aagtaaatgg tttgataaaa aatgcaagta ttattgatga gaattttaat
     6301 caagggcttt atagggtaaa cttagaactt aaaatcgatg cagacaagtg gaaagaattg
     6361 tttgcttatt aatctttctt agctttaagc tttttgccca agatgaattt attttttggg
     6421 cagagctttc tagtaaaaat ttcattcttt ttcatcaaaa tcaaaattta tccttagcaa
     6481 tgacgcaaag cgaaaatgtt gaagaacaat gggtatgtga aatttcttat agtgatcaag
     6541 atttaaaagt tttacctcga acttctttag cattgattga tgataatatg ccaaaaacaa
     6601 ttaaatttaa ttttttaaat tctcataaag atgaattaag cgattgcttt ataggagcta
     6661 gaatcagtgt taaggatatt gttaatactg acttattaca tgcccaaagc gaaacttatg
     6721 tcaaaatttt acccttgcgt tttaccgtgg aatttggcga acaaaatgcg ataatttatt
     6781 atcttaaaaa aaagtaaatt caaaattaag cgcaaattgg ataccatagc agaaattttt
     6841 taaaaggctt aggatgaatt tagtcatagt agaagatgat attaatatgc gcaaatcctt
     6901 agaaattgca ttagcagagt atgaagaatt taatattaaa tcttataaat ctgccactga
     6961 ggctttaaaa aaaatagatg ataatacaga tttgattatt acagatatta atatgccagg
     7021 aattgatggc atagaatttg ttaaagcctg tgaaaataaa tatgatttta ttattatgac
     7081 aggaaatgct actttaagcc gtgctataga agcggttcgt ttgggagtaa aagattttct
     7141 aaccaagcct tttgatgttg atactttagt cgaggctatt aagcgtgcta aaatcataag
     7201 agaaaaaaca gccaataaaa aaagcaaaaa aaatgaaaaa aaagaagaaa ataaagattt
     7261 tttttcaact tctcctaatt tagaaaaaac attaaattta agtcaaaaag cggctaaaac
     7321 tgatgcctct gtaatgtttt ttggagagag tggagtagga aaagaggtat tttctcgtta
     7381 tattcacact cattctaaac gctctaataa gccttttgtt gctattaata tggcagccat
     7441 tcctgcaaat ttgattgaaa gtgagctttt tggttttgaa aaaggtgctt ttactgatgc
     7501 caatgcaact aaaatagggc tttttgaaat ggctaatgag ggtactttgt ttttagatga
     7561 aattggcgaa atgccttatg aaattcaagc caaactttta agagctttgc aagaaaaaga
     7621 aattacgcga cttggaagta cgaaaagcat caaaatagat gtaagaatta tcagtgcaac
     7681 taatgcaaat ttagatgaaa aaataaaaaa tggcgaattt cgttcagatt tatattatcg
     7741 tttaaacact gttcctgtta atatcccgcc tttaagagag cgcaaagaag aaattttagg
     7801 tatagctcaa aaggttttag aagatacttg taaagaatat gattttaagg aaaaacagct
     7861 cagccaagaa gctaaaaatg ctttacttga atatgatttt cctggtaata ttagagaatt
     7921 aatatccgtt gtacaaagag cttgtatttt aagtgaaaat gatgaaattt caagtgaaga
     7981 tttgttctta gaagctagaa gtataaaaaa agatgtaaag aatttagaga aagaattgat
     8041 ttgtgaagtt cttttaagtg tagattatga caaggatcaa gcttctcaaa ttttaggtat
     8101 ggatataaaa attttaaatg aaaaaattaa aaaatatcaa ataaaggata ggtaatgtca
     8161 aaaaaacaaa aaatagccat tgtgggtgct actggtgcgg ttggggaaga gcttttaaat
     8221 gttttagatg aacttgattt tccagtggaa agtattttac ctttagcaag tgcaaaaagt
     8281 gtaggtagtg aagtagaatt taaaggcaaa gcttataaag tcaaagaact tactgaaaat
     8341 gtatttaaag aaaatcctat tgatattgct ttttttagcg caggtggaag tgtgagtgaa
     8401 aaatatgcta aatttgcagt agaatcgggt gctgttgtta ttgataatac aagtcatttt
     8461 agaatggaaa aagatgttcc tttggtggtt cctgaatgca atcctgagga tattaaagat
     8521 tggaaaaaaa cagggattat tgctaatcca aattgttcta ccatacaaat ggtgcaagtt
     8581 ttaaaacctt taaatgatgc atttaattta aagcgtgttg atgtaagtac ctatcaggct
     8641 gcaagtggag caggaaaaga aggaatgcaa gaattggttg aagccatgca aagttttttt
     8701 gcttttaaac ttgatgagtt taaatctcaa acttttcctt atactttggc acttaatctt
     8761 attccgcaaa ttgatgtttt tatggataat gattacacta aagaagaact taaaatggtt
     8821 aatgaaactc aaaaaatttt acataaaaat ttagaagttt cagcaacttg tgttagagtg
     8881 cctgttttaa gaagtcatag cgaagccatt actatgcatt ttgaaaaaga aatagatgta
     8941 aaaaaagcta aagaaatttt agaaaaagca ccaagtgttg ttgtcataga tgatcctaaa
     9001 aataaaaaat accctatgcc tttaatgaca agtgatacta atgaaactta tgtaggaaga
     9061 attcgtgctg atgtgtatga taaaaaaata ctccatcttt ggtgtgtggc agatcaaatt
     9121 cgtgtaggtg ctgcaacaaa tgctgtgcgt attgcgcaaa aatggttaga attaaaaaat
     9181 aaataaggaa aaaaatgtta gagaaaatat ttgaatcttt acttgttaga agtcgtattg
     9241 ttacaatttt acccgtaatt tttggtttaa ttggagcttt tgtattgttt tttattgcaa
     9301 gttatgatgt tttaaaagtt atattttata cttataatta tttttttgat gcaggttcta
     9361 atgtggattt gcatgaggat gtggtggctt taattatagg agctgttgat ctttatctta
     9421 tggctttagt tttgtttatt ttttcttttg gagtttatga gctttttatc agcgaaatag
     9481 aagaatttaa acaaacaaaa caaagcaagg ttttagaggt gcatagctta gatcaattaa
     9541 aagacaagct tgcaaaagtt attattatgg tcttagtggt aaatttcttt caaagggttt
     9601 tgcagatgaa atttgctact cctgtggata tggcttttct cgctggatcg attttagctc
     9661 tttgtgtagg actttatttt ttacacaaag gtggtcatta acaaggatta tctttttttg
     9721 atataatcgt cttttgtgtt taaagaataa aaataaaaaa aaatattttt aattggtatg
     9781 attttaaatc attttgtttt tgcagctccg ttagatgaag tctttaaaga tatagaagtt
     9841 tcagggactg ttcgttatcg ctatgatatt aaaaaagaaa aaaaatacaa caaaaaaaca
     9901 catagatatc aaaataaaac acaaacggaa attacaataa aataaggaaa atcatgatta
     9961 tacgatggtt gtttattagt tcaatatttg ttgttgcgct ttttggtatt aacttgaaat
    10021 cattttttac ttataccttt gatgcaaata agcaatatga tatggaaaaa gcgaaggctt
    10081 tgtattttca aaataaatgc aatacttgcc atggagataa tgctgaaaag agtgttatag
    10141 gatctagaat tttaaaagat atgtctcctg aggatattaa aggagctttg ataggttata
    10201 ctcttgatag tagcagttct acaacagctt ctcaaatggc tttttatgct agaaatttaa
    10261 gccacgagga tatagataat attattgctt atattaaagg tggaaatttt gcgcttgatt
    10321 tgcaagtaaa agaccttctt gaagaagaac ctgcgcaaaa aacaaaacat aatatatttc
    10381 taaaataaaa tgtaaaaact ataattaaaa ggaatgctat gaaaaaacta actttaactt
    10441 taagtgtttt aactatggta aattgcttat atgctaagga tattaatata ggagtagttt
    10501 tacctttaac tggaactgtg gcagcttatg ggcaagatgt ttttaacgga attgaactgg
    10561 ctaataagct acagccaaaa ctttcaaatg gagatgttat taaacttatc acaatagata
    10621 caaaaggaga taagcttgaa acttcaaacg gagttaatcg tttaatagca acagataaag
    10681 tcctcgggat tattggtgaa gctacaactc caaataccat tcaagctatt tctatagcag
    10741 aagagaaaaa aattcctcta atagctccag tagcatctgg agataaattg ctagataaaa
    10801 agaaatatgc aagtagagtt tgttttaaag acagttttca aggagataaa tttgctactt
    10861 atgtatctaa ggatttaggg cttaaaaatg ctgttatcat catagatcaa agcaatgttt
    10921 attctttagg tttggcaaga gcttttgaaa attcttttaa gaataatggt gggaaaatta
    10981 taaaaaaact tgttattaat tcaggagata aagattttag agctgtggtt tctcaactta
    11041 agagtttaaa tcctgatttt gtttatatgc ctatttatca tcctgaagct gctttaattg
    11101 cgagacaagc aagacaaatt ggttttgata aacttttagc agcaggagat ggtgttaata
    11161 atcaaacttt tatagatctt ggcggaagtg ctgttaatgg agtaattttc actgatagtt
    11221 ttgattatag caatccatct acacaattag gaaaagattt tgttgcagct tatgagaaag
    11281 ttaaaggaac aaaagaactt ccagcatttt cggctatggg ggctgatgcg tattttgtaa
    11341 tgttaaatgc tatgaatgct tgcgttgata atcttagcag cgaatgtatt aatagcaaaa
    11401 ttcatcaaac taaagatttt caagctgttg gtggtgtaat tagcatagat gaaagcggta
    11461 atgctattcg ttctgttgtg attaaagaaa ttcaagatca aaaacaaaat tataaaacaa
    11521 ttataaatcc ataattacta aaataaaggt agagaatgaa aaaaagttta attttagcaa
    11581 gtattctaag tttaagttta agtgctgcgg aagtcaaaat aggagttgtt ttaccactta
    11641 gcggagctac tgcagcatat ggacaaagtg cactagaagg gattaaactt gcaaattcaa
    11701 tgcaatcaac tttaagtaat ggagataagg tttctcttgc tattattgat actaaaggtg
    11761 ataaattaga atcttcgagt ggagcaaatc gtttagtttc tcaagataaa gttataggtc
    11821 ttatagggga aatggttact gctaatacat tgcaagttat gcgcgtagca gaagataata
    11881 aaattccatt gatcgctcct gctgcaactg gtgatagatt gcttgataaa aaaatatatt
    11941 cttctcgagt atgttttatg gacagttttc aaggttcatc tttagcaaaa tatgtttttt
    12001 caaaacttaa ttacaaaagt gctgttattg tagtagatca aagcactgac tattccttag
    12061 gtttagcaaa agcttttgaa aaacagtaca agtctaatgg tggtcaaatt cttagaattt
    12121 taagagttaa ttcaggtgat aaagatttta gagctattgt agctcaagtt aaaagtttaa
    12181 atccagaatt tattttttta ccgctttatt atagcgaagc ttctttattt gcaagacaat
    12241 caaaactcgc aggtttaaat attcctatgg gttctgcaga tggagttgct gatcaaactt
    12301 ttattagttt agctggagat gcaagcgagg gttatatttt cacagatagt tttgatgcta
    12361 ataatccaac tacaaaatta agcaaagaat ttatcagtgt ttatgaaaaa gctaaaggaa
    12421 caaaagaagt tccaaatttt tcagctatgg gtgctgatgc gtattttgta atgctaaatg
    12481 ctatgaatgc ttgcgttgaa aatcttacta gtaagtgtgt caatgaaaaa attcaccaaa
    12541 ctaaaaatta tcaaggtgtt tctggtgtta tcagtattga tcaaacagga aatgcaactc
    12601 gttctgtagt ggttaaagaa attaaaaatc aaaagcaaaa ttataaagat attatcaatc
    12661 cttaaaggaa aaatagaaag attatggatt ctactttatt tttacaacaa cttgttaatg
    12721 gacttagttt gggcagtatg tatgccctta ttgctgttgg ctatactatg gtttatggcg
    12781 tgttaagact tattaatttt gctcacggcg atattatgat ggttggtgct tatgcagctc
    12841 ttttttgcat gactaatcta aatgttcctt ttctaggagc tttgtctttg gcaatgattt
    12901 ttgctgcttg tgttggaata gctacagata gaatcgctta taaaccttta agacaggctc
    12961 ctagaatttc attgttgatt acagcaattg gtattagttt tttcttgcaa aatcttttta
    13021 atatactttt tacttcaaca cctagaactt ttacaccgcc aagttatttt gaggaaagtg
    13081 ttaattttgg cggagtgata acaacttatg gttctttaat ggttcctgct cttacatttg
    13141 ttattttaat agcagtgtta tggattttat ataaaagcaa atatggtata gctattcgtg
    13201 ctttggcatt tgatatacaa acagtaaatt taatgggtat agatgcaaat cgtattattg
    13261 ctatagtttt tgccctaggt tcagctttgg cagcagttgg gggcgttttt tgggctgcaa
    13321 attattactc tgttgaacct actatgggaa ctttaatagg tttgaaagct tttgctgctg
    13381 cagttttagg aggtataggt tctgtagtag gtgcagtttt gggtggactt attataggat
    13441 ttactgaagt tgttgttgtg gctttttttc cagatttatc aggctttaaa gatgcatttg
    13501 cttttatttt tttggtgttt atattgttat ttagacctac gggaatttta ggtataaatt
    13561 ttgaaaagag taggttttga tgatggttag aattaaggtt tcacatttaa tctttttaat
    13621 tgcttcaatt gtttttattt tcgtttctcc ttatattttt ggggactatg gattaaacat
    13681 tgttaatcaa attgctattt ttattatttt ggctgtgagt tacaatctta ttaatggtgt
    13741 aactggacaa ttttcactag aacccaatgg atttgttgcg attggagctt atgcggctgc
    13801 tttagttctt ttaagtgctg atgcgaaaaa tgatcagttt tttttagatg gtcctagttc
    13861 ttttatttta gccatccatt caaattcctt tattctagct ttaattgtgg ctggaatttg
    13921 ttcatcttta cttgccctga ttttagcttt tgctgtattt cgcgtgagag gggattattt
    13981 ggctattgta actttaggtt ttggaataat tattaaaata gctgctatta attttccttc
    14041 tattactaat ggctcaagag gactggtaga tattccacaa ttttccacga tctattggac
    14101 aggtggtatt gctattgtag cggttatttt aattttaaat atagtttatt ctaaatatgg
    14161 tcgtgcaatg aaggctataa gagatgatga agatgctgca agcgctatgg gaataaatac
    14221 tttttggata aaaactttag cttttagcac ttcggcattt ttagaaggtg tgggtggcgg
    14281 acttttagct tgtctattga ctaccgtatc tccaactcaa tttgattttt tacttacttt
    14341 tcagcttttg attattattg ttttaggtgg acttggttct actacaggtg ctattatagg
    14401 tgcgatattg gttattggtg gaagcgagtg gcttagattt ttagatgagt taaatataaa
    14461 aatagattct ttaaatcttg atatccaatc aatgccaggg cttagaatgg ttgttttttc
    14521 tattgttctg attttagtaa tgctttttgc aagaaaaggc ataatgggtt attatgagtt
    14581 aagtgatgtg attagaggga ttaaaaagcg ttttaaaagg agtgaaaaat gattttggaa
    14641 ttaaaacaca tttcaaaaag ttttggtagt gttaaagcta ttaatgaaac ttcttttaaa
    14701 atcaatgagg gtgaaatttt tgctttaatt ggacctaatg gggctggtaa aacaactctt
    14761 tttaatatta taacaggtaa ctataaacct agttcaggtt cggttgaatt tctaggagaa
    14821 agaattgacc acttaaaacc tcataagatt gtgcatttag gaatagctag aacatttcaa
    14881 aatattaggc ttttttcaag catgaatgtg cttgaaaatg ttcttattgg ttttaataaa
    14941 caaatgaaat ataatatttt tgaagccttt ttgcatttag ggcgttttgg aaaaatagaa
    15001 caagtattta aagagaaggc ttatgcaata ttagaagaac ttggtattgc agaatttgcc
    15061 tatgaaaagg ctgctagctt gagttatgga caacaaagaa aagttgagat tgcaagagca
    15121 atggctactc agccaagatt attattgctt gatgagccag ccgctgggat gaatagctct
    15181 gagagtgatg aacttgctga gctcattttt aaattacgaa aagattataa aattagcgtt
    15241 ttgcttatag agcatgatat gaaatttgtc aataaattgt gtgatcgcgt attggtgctt
    15301 gattatggaa aaacaatttt tgaaggtaaa ctttgcgatg ctgtaaatca taaagaagta
    15361 attgctgcgt atttagggga ttttgatgct aatagttaaa gatttgcatg tttattatgg
    15421 attaattgaa gctgttaaag ggattgattt taaagtggaa acaggtcata ttgtttctct
    15481 tataggttca aatggagcag gtaaaacttc aactttaaat gcgcttttaa actcagttaa
    15541 aagaactggt gaggttaatt tcttaggtta tgatactaaa agacatttaa ctcatactct
    15601 agttcaaaaa ggtatagctt tagttcctga aggaaggcgt gtttttatta atttaagcgt
    15661 agaggaaaat ttaaaaatag gtgcttttaa taatgctgaa aattatgagc atttaagaga
    15721 gcaaatgtat aaactttttc caagacttac aagtaaaaag catgctttag ctggaacatt
    15781 gagtggaggg gaagcgcaaa tgcttgcgat ttcaagagct ttaatgagtg aaccaaaact
    15841 tttgatgttg gatgagcctt ctttgggact tgctccaaag attgtgggtg aagtttttga
    15901 tattattgtg cgtttaaaag aagagggtat aactattctt ttggtagagc aaaatgctta
    15961 ttctgcatta aaaataagtg attatgctta tgttttggaa aatggtcgca ttgtaatgga
    16021 aaacgaggct aaaaatttaa taggtgatga tgagattaga aagaaatatt tagggcttta
    16081 aaatttaaag gaaaaagaat gaaaaatata ataaaaagca taggggattt aagagtttcg
    16141 gttgtattgt ttttgctttt tgcgcttttt tgtgctttgg caacttttat tgaaagtgct
    16201 tatggaactc ctacggcttg ggcaatggtt tatgatactt tttggtttga atatatacaa
    16261 cttttacttg gtattaattt actatgcggg atgtttcgtt ataaaatgtt tgggcttaaa
    16321 aaattgcctt taatgatttt tcatatttct tttttattta ttttagtggg ttctgcaatg
    16381 acaagatatg ctggttttga aggtatttta cctattagag agcatactca aaattcactt
    16441 atagaaagtt ctaagacttc tttgcgcatt tctgctataa aagatggaga acgctatagt
    16501 gcggttaatg atcgttatat aggaaatttg ccttttgcta attcttttaa actaaaactt
    16561 aatttaggtg atgatcaagc tgtattaaaa tataaagatt taatcttaaa tgctcattat
    16621 acttataaag aaaataataa ttctgatcct ttattggttt tgatgctttc tcaaaaagga
    16681 tctcaaggcg ttgatgttaa atttgaaaaa ggtgaagtta agaatataga aggggttaat
    16741 tttgctttta tgaatgataa tgttaaagca ccttttgtaa aaattgacga aaatttaact
    16801 ttaagttcaa gtgaaaactt acattttcta agtatgctag atggacaaaa tttggatctt
    16861 aaaattggag aaaaggcaaa tgctaaggaa agaaggcttt atgaaattaa agatattagt
    16921 tttgtagtta aagctgcttc tttacacgca caagaagctt tagaaggttc taatagacct
    16981 caagatgaaa gtttttggtt atggtttaaa tctgcttggt tggaagtggg tagaactatg
    17041 ttgatttcta cttttggcga gcctcaaaat tggaaaaatt ctttattatt gcattttaaa
    17101 gattttgctt taagtaatga gaataaaaac ttagaattaa ctggctctaa tgctttaaaa
    17161 ttagaattaa gctataaa
//
LOCUS       DAZBIH010000026        17162 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.026, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000026 DAZBIH010000000
VERSION     DAZBIH010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 17162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.026"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..98)
                     /locus_tag="ACHFOB_000714"
     CDS             complement(<1..98)
                     /locus_tag="ACHFOB_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFN5799528.1"
                     /translation="MEKTDFRALQKIRLFKHSKLNFKQDYKIFKECL"
     gene            181..738
                     /locus_tag="ACHFOB_000715"
     CDS             181..738
                     /locus_tag="ACHFOB_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN5799529.1"
                     /translation="MKIKKILLLVAISCLFVACSNDKEKQQNDVNLSTEASINQSDDM
                     NFKLNLIDGGSISVKKENTVLNFNDEDKATLFVFFTTWCTPCIAEIPHLNKLQEKYNN
                     DFNIVGVLLEDKSNDEIQKFIEQHKISYKVANGENNYLLAKALGGVNGIPTMFLYNKH
                     SKLINQYLGLIPEEMLEIDIQKAIL"
     gene            738..1604
                     /gene="ftsY"
                     /locus_tag="ACHFOB_000716"
     CDS             738..1604
                     /gene="ftsY"
                     /locus_tag="ACHFOB_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HFN5799530.1"
                     /translation="MFNFFKKGLAKTLENIVGVKGENKKITKDLLEEILLEADVSYEI
                     VEEIIYYLPPQNEVKKEDLKRVMGSYFLYEKKETNQEKPFVELILGVNGAGKTTSIAK
                     LAYLYKNQNQKVILGACDTFRAGAIEQLKLWAQKVDVDIVLTAQGHDPSAVAFDTISK
                     AKAKDFDRVIIDTAGRLQNQKNLAHELEKIVRISNKALEGAPHRKILVLDGTQGNAGI
                     LQAKAFNELVKLDGVIITKLDGTAKGGALFSIARELELPIFYVGVGEQMTDLQEFNAN
                     AYLDTLLDPIFE"
     gene            1604..2944
                     /gene="radA"
                     /locus_tag="ACHFOB_000717"
     CDS             1604..2944
                     /gene="radA"
                     /locus_tag="ACHFOB_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HFN5799531.1"
                     /translation="MAKNKALFECQACGNQQSKWLGKCPDCGAWDSFVELKAERIKVL
                     KELAQVSMKTSEAVCIEDVELEHFTRYSTDDNELDLVLGGGLVEGSLVLIGGSPGVGK
                     STLLLKIASNLAKQGKKVLYVSGEESKAQIKLRADRLEANTPNLFLLTELCLENILEE
                     LHKKDYSILIVDSIQTLYSNKITSAAGSITQVREITFELMRVSKAYNISTFIIGHITK
                     EGAIAGPRVLEHMVDVVLYFEGDATKEIRLLRGFKNRFGGTNEVGIFEMTAKGLISAK
                     DLANRFFTRGKAISGSALGVVMEGSRALVLEVQALVCESSYPKRSATGYEKNRLDMLL
                     ALLERKLGIPLGHYDVFVNISGGVKVSETAADLAVVAAIISSFKNRPLSKDSIFIGEL
                     SLNGEIREVFSLDTRLKEAKMQKFKNAIIPSKPLEDIGLKCFVAKELSQVLEWM"
     gene            3013..3693
                     /gene="atpB"
                     /locus_tag="ACHFOB_000718"
     CDS             3013..3693
                     /gene="atpB"
                     /locus_tag="ACHFOB_000718"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045263 - proton-transporting ATP
                     synthase complex, coupling factor F(o) [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015986 - proton motive force-driven ATP
                     synthesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HFN5799532.1"
                     /translation="MKDLFLFSSLLDASHTFSYFFHIGLVALIAVIVAMMATRSMQLV
                     PRGMQNLGEAFLEGVLSMGRDTMGSEKGARKYLPLVATLGIIVFFSNIIGIIPGFHSP
                     TASLNLTLSLAIIVFVYYHFEGIRAQGFVKYFAHFMGPIKLLAPLMFPIEIVSHLSRV
                     VSLSFRLFGNIKGDDLFLMVILALVPYIAPLPAYVLLTFMAFLQAFIFMILTYVYLAG
                     ATVVEEGH"
     gene            3690..3881
                     /locus_tag="ACHFOB_000719"
     CDS             3690..3881
                     /locus_tag="ACHFOB_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799533.1"
                     /translation="MIYILEFFKGASLALMLFGALFFFFKYNSFFYLCLGIIPGLLLS
                     LIFVLLIENHKLKNEIKLR"
     gene            complement(3903..4751)
                     /gene="metF"
                     /locus_tag="ACHFOB_000720"
     CDS             complement(3903..4751)
                     /gene="metF"
                     /locus_tag="ACHFOB_000720"
                     /EC_number="1.5.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0004489 - methylenetetrahydrofolate
                     reductase (NAD(P)H) activity [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylenetetrahydrofolate reductase [NAD(P)H]"
                     /protein_id="HFN5799534.1"
                     /translation="MCSFSFEVFPPRKDENIKNLHAILDDLGQLSPNFISVTFGAGGS
                     INSQNTLEVASLIQEEYQIPSIVHLPCIHSSKEKITQILQKCKEKNLNQILALRGDIC
                     ENLEKSKDFSYASDLISFIKKQEYFEIYAACYPEKHNESKNFIEDIHYLKTKVNAGTD
                     KLITQLFYDNEDFYTFKQNCALAGIDIPIYAGIMPITNKRQVLKISQLCGAKIPPKFV
                     KILEKYENNALALEDAGIAYACDQIVDLITSGVDGIHLYTMNKSKAAIKIYEAVKHLL
                     KEELHA"
     gene            complement(4761..7025)
                     /gene="metE"
                     /locus_tag="ACHFOB_000721"
     CDS             complement(4761..7025)
                     /gene="metE"
                     /locus_tag="ACHFOB_000721"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003871 -
                     5-methyltetrahydropteroyltriglutamate-homocysteine
                     S-methyltransferase activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HFN5799535.1"
                     /translation="MKNSIISYPRIGANRELKFAIEKYFKNQSSKEELLKSAKDLRIR
                     HWQEIQKAGIDFIPSNDFSLYDNVLDAAVLFNIVHTKYKNLNLDALDEYFAQSRGYQG
                     ENGDVTALAMKKWFNTNYHYLVPECDNADIIALTGDKIFKEYLEAKELGIESKPVLIG
                     IFTLFKLIAFKDEKTQKLAKEKLLNAYIELFDKLNELKVTWLELDEPYLVYDLSKEDI
                     ALFEEFYQELLNHKKDLKILLQSYFGDLRDIYPKLLESKFDALGLDFIEGKQSLALIQ
                     KYGFAKDKILFAGLINGKNIYANDYAKSLKLIKELQKYTQNIVLNTSCSLLHVPYSTE
                     FESKLDSSYLKLFAFAKEKLQELKDLKEILNSSEENPLFRANQELFKNIPERLDEKVK
                     ARLKALKKEDFTRTPSFKERALIQKEFLKLPLLPTTTIGSFPQSTDVRSNRLAFKQEK
                     ISAQNYTEFNQQKIKECIQIQEEIGLDVLVHGEFERNDMVEYFGENLKGFLFTQNGWV
                     QSYGTRCVKPPVIWGDVSRTKPITLAWSKFAQSLSQKIVKGMLTGPVTILNWSFPRED
                     ISLKESTEQIALAIRDEVLDLENAGIKIIQIDEAALREKLPLRKSDWHSEYLDWAIPA
                     FNLVHSGVKAKTQIHTHMCYSEFGDILKEIDAMDADVISFEASRSNLSLLDTLKAIRF
                     KTEVGPGVYDIHSPRVPSVEELSLTIEKILNKLPKEQIWINPDCGLKTRAYEEVIASL
                     KNLVTATQKIREQL"
     gene            complement(7037..7807)
                     /locus_tag="ACHFOB_000722"
     CDS             complement(7037..7807)
                     /locus_tag="ACHFOB_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN5799536.1"
                     /translation="MTLFTKAFCVATLFTGFAWANEELKVGSSITPHADILRFIKSVL
                     QKQGYDLKIYEFNDGVIPNVMVENGELDANYFQHEPYLKEFNQRQGTHLVKVASIHIE
                     PMAVYSKKHKKFNPEEGQSISIPNNPTNESRALRIVASKGLIEVKDNELITPLDITKN
                     PKKLKFVELKDAQLTRSLNDVDYSLINSNFAILAGLNPVKDGLYTESKYSEYGNIIAV
                     KEGNENLPKIKALVKALQSDEVKKFIEEKYQGALIPTF"
     gene            complement(7818..8810)
                     /locus_tag="ACHFOB_000723"
     CDS             complement(7818..8810)
                     /locus_tag="ACHFOB_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopenicillin N synthase family dioxygenase"
                     /protein_id="HFN5799537.1"
                     /translation="MNLPILDLQAYEKDKSTFLKNLREIASKIGFFYLINTSIDKNLN
                     EKLFKLGKEFFNLSRSSKELISMVHSPQFRGYTSEGFEYTAGTKDYREQLDIGTERDA
                     LNWNLNSPLWQRLEGPNLWPSEIPELKKTFLTWHKQTKKACLKLLKAFAQVLDLPSNA
                     FDKLYGENSYEHCKIIHYPKSSKNITQGVGSHKDGGLITFVFQEKQSGLEAFIDGKWL
                     SIPPLENSVVVNIGEFLELATNGYLKATIHRVNLSPKERFSIAYFLGVQLDKDIPIFK
                     LNPELAKESKGVDTDPKNPLLRNVASNYFKRMIRSHPDVASIYHSDLIEKFSFA"
     gene            complement(9122..9616)
                     /gene="luxS"
                     /locus_tag="ACHFOB_000724"
     CDS             complement(9122..9616)
                     /gene="luxS"
                     /locus_tag="ACHFOB_000724"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HFN5799538.1"
                     /translation="MPLLDSFKVNHTKMPAPAVRLAKVMKTPKGDDISVFDLRFCVPN
                     KDIMSEKGTHTLEHLFAGFMRDHLNSDSVEIIDISPMGCRTGFYMSLIGTPDEKSVAK
                     AWEEAMKDVLSVSDQSKIPELNIYQCGTCAMHSLDEAKQIAQKVLNLGISIMNNKELK
                     LENA"
     gene            9731..11149
                     /gene="gatB"
                     /locus_tag="ACHFOB_000725"
     CDS             9731..11149
                     /gene="gatB"
                     /locus_tag="ACHFOB_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HFN5799539.1"
                     /translation="MFEVVIGLEVHTQLNTKTKIFCSCATSFGEAPNTNVCPTCLALP
                     GALPVLNEEAVKKAIAFGKAVNAAINKKSVFNRKNYFYPDLPKAYQISQFDIPIVEKG
                     ELFINVKGENKRIGITRAHLEEDAGKNIHENNFSKVDLNRAGTPLLEIVSEPELRSSD
                     EAVAYLKKLHSIIRFLDISDANMQEGSFRCDANVSIRPKGDTKLYTRVEIKNLNSFRF
                     IQKAIEYEVKRQSEAWEDGTYEQEVVQETRLFDTTNLVTRSMRGKEEAAEYRYFPDPD
                     LLPVLLKDEFLDIKIPELPDEKKARFIDELGIKESDAEVLISSLEMSRFFESLISQNL
                     NPKLCVNWLNTELMGLLKGELTIENSPVDAQKLGVLIKRIEDGTISAKAAKDVLAFVF
                     ENTSVEIDEAIEKLGLKQVSDDSAIEAVIEQILNANANKVAEYKSGKDKLFGFFVGQT
                     MKEGKGAFNPAKVNEILKTKLG"
     gene            11146..12042
                     /gene="gpsA"
                     /locus_tag="ACHFOB_000726"
     CDS             11146..12042
                     /gene="gpsA"
                     /locus_tag="ACHFOB_000726"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HFN5799540.1"
                     /translation="MMRIAVIGAGKWGSALHLALKENHNCFISSLHQRDLEDFVSIKE
                     ALECEYLIFALSSQGMRVWLKENFINKGQKILIASKGIEDQSCQFLDEIFLDFVPKEN
                     FCVLSGPSFAAEVMQKLPTALMISGINQELCKKFASFFPDFIKTYIDNDVRGAEICGA
                     YKNVLAIASGISDGLKLGNNARAALISRGLIEMHRFGKFFGTKEETFLGLSGAGDLFL
                     TATSVLSRNYRVGLKLAQNQKLDSILAELNEVAEGVKTAYAIEKLAKMKGIYTPIVNE
                     VVAIFKGKSVQEATQNLLKQND"
     gene            12052..13230
                     /locus_tag="ACHFOB_000727"
     CDS             12052..13230
                     /locus_tag="ACHFOB_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HFN5799541.1"
                     /translation="MIIKNAKIYGDSLQDIEIKEGKITNIGSNLQGEEILDAKGMTLL
                     PSFVDLCVSLKNDKFSLANLELLENECLKGGISSIVLRDCMDFDEESFALFLQNLAQR
                     KMQIFSSVRVKDTNGKLKNLATLLNKGACALELDSSLDANTLKVSSQYAFMKDSPIFV
                     RCYDKDFDDNGVMNDCEMSFELGLIGMSKIAETSQIAKMKELAKFYKNKVIFDLLSLK
                     DSLVLLDEKDLKLVSIHHLIKDDSACEDFNTAAKLMPPLRSKEDVLALREALKEGKIS
                     FLTSLHSAKSISLKDLAFDEAAFGIHSVCEFISLCYTFLIKEGFLNWQELCRFTSKNP
                     SEFLGLNSGVIEVGKEANLVLFDENEEIFAPKSSLYSEDKLFGKIKMHIIKGKNILEK
                     "
     gene            complement(13238..14764)
                     /locus_tag="ACHFOB_000728"
     CDS             complement(13238..14764)
                     /locus_tag="ACHFOB_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HFN5799542.1"
                     /translation="MQKDNLIAFVIFIISTIAFVIWGFGYISQHQLILFILASIFGIF
                     MAFNIGGNDVANSFGTSVGAKTVTIKQALIIAAVFELSGAIFAGAEVTKTIRSGIVIF
                     PNSLDPMLFVIIMLAALLSSGVWIFIATKKGLPVSTTHSIVGGIVGASIMMGLLKFDG
                     IQTLSMVKWSEILRIAISWVASPLLGGIVAYIIYSYIDKKILKPSEKLNDDLKNIKKE
                     RKKFKEEYFLNLKTKSQEEQIKELSAIALDEEEQENNFYRNKMKEFKDQEKDIDIYSI
                     LKTHMPIIACIAAAIISAMFLFKGLNNVSTLDILQNFWIIGIIGTISYVITFAIVKIV
                     KKTELNKTTDRIFSWFQIFTASSFAFSHGANDIANAIGPFAAILDVLKNGTINATSPV
                     PFAALAMFGVALVVGLWFLGKEVITTVGSKLATIRPTTGFSAELGASIVILLATQFGI
                     PVSSTHILIGAILGIGVYNKNANWIMMKPIGLAWIITLPAAGIMAALVFLGFKLSLGI
                     "
     gene            14906..15712
                     /locus_tag="ACHFOB_000729"
     CDS             14906..15712
                     /locus_tag="ACHFOB_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inverse autotransporter beta-barrel
                     domain-containing protein"
                     /protein_id="HFN5799543.1"
                     /translation="MRGIFYIIALFSLLNGDELTEALAKNNNQNSWEHFDYKNTKEAP
                     KIQEENVDFKSTFDSLLSKTLENNNGIDKTDGNLDFQNENVQVKNLSSLYEGENNSLL
                     FQKELFVAQNNYNYSGGLINRYEKDDFLFGVNGFIDKQKEQKDTKSFGTEFGYSKFIK
                     AYSNYYIPNEAEKNLQLGMSFVIPTYTAFAFDISKDNDKTNYQVSYSPYSVFSLNLLR
                     RDYSARETVDDTVVQVGFSFNFNESFLKQFRKKDNTLEEVNRYDFLQRTH"
     gene            complement(15709..17085)
                     /gene="dctA"
                     /locus_tag="ACHFOB_000730"
     CDS             complement(15709..17085)
                     /gene="dctA"
                     /locus_tag="ACHFOB_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:dicarboxylase symporter family
                     transporter"
                     /protein_id="HFN5799544.1"
                     /translation="METLSQTLAERKPPLYKRIIKSLGFWVIIGIIAGIVLGYIDKEL
                     AIASKPGVDYFIGALKVLIGPIIFVTLVLGIISLESLKKVGSIGAKAVIYFEVVSTLA
                     LAIGIFMANVMQPGHGMNLNPSQLDTKSVQKYISQTTEVSASSEIMHILKDAMPTDII
                     TPFTEGKTIQVLVIAIITALIISLMRTEDKQAIQRVFEVVQNFVFKILQIIMYFSPIA
                     AFSAMAVLIAQYGIGSLINLAYLLLVMLISCLVFIFGILGLICYFAKVNIFKFMRFIS
                     REVLIVFATSSSESALAPLMRKLEKAGLSKATVGLVLPTGYSFNLDCTNIYLAMSLIF
                     LAQAFNVNLSLAHEISILIVLMIASKGAVGVTGSGFIVLGSTLAALGNMEISEANATL
                     AQVLPVAAIGVLLGVDKFMSEMRAVGNLCGNSVAALIVAIWDKQIDWEKFRYAMDNPE
                     KFHNAGMN"
BASE COUNT         5760 a         2483 c         2912 g         6007 t
ORIGIN      
        1 agacattctt taaatatttt ataatcttgt ttgaaattta gttttgaatg tttgaaaagg
       61 cgtatttttt gcaatgccct aaaatctgtt ttttccatta atatgccttt aaaaaaatat
      121 tatcttatgt atgttataat tttagcattt ttataaagaa gaataaagga ttgataaata
      181 atgaagatta aaaaaatact tttactagtg gcaatatctt gtttgtttgt tgcttgtagc
      241 aatgataaag aaaagcagca aaatgatgta aatttaagca ccgaggcaag tataaatcaa
      301 agtgatgata tgaattttaa acttaatttg attgatggag gatcaatttc agttaaaaaa
      361 gaaaataccg ttttaaattt caacgatgaa gataaggcaa ctttgtttgt attttttacc
      421 acttggtgta ccccttgcat tgctgaaatc cctcatctta ataaattaca agaaaagtat
      481 aataatgatt ttaatatagt tggggtttta ttagaagata aatctaatga tgagattcaa
      541 aaatttatag aacagcataa aatatcttat aaagtcgcta atggtgaaaa taactatctt
      601 ttagctaaag ctttaggcgg ggtaaatgga attcctacca tgtttcttta caacaagcat
      661 tctaaattga ttaatcagta tttagggctt attcctgaag aaatgctaga aattgatata
      721 caaaaggcta tactttaatg tttaattttt ttaaaaaagg acttgcaaaa actcttgaaa
      781 atattgttgg agttaaagga gagaataaaa agataaccaa agatttgctt gaagaaattt
      841 tgcttgaagc agatgtaagt tatgaaatag ttgaagagat aatttattat ttaccacctc
      901 aaaatgaagt aaaaaaagaa gatttaaagc gtgttatggg ttcttatttt ctttatgaaa
      961 aaaaagaaac caatcaagaa aaaccttttg tagagcttat tttaggagta aatggagcag
     1021 gaaaaacaac aagtattgcc aagcttgctt atttatacaa aaaccaaaat caaaaagtga
     1081 ttttaggagc gtgtgatact tttagagcag gtgcgattga gcaattaaaa ctttgggcgc
     1141 aaaaagtgga tgtagatata gttttaactg cacaagggca tgatccttca gcggttgctt
     1201 ttgataccat ttctaaagca aaagcaaagg attttgatag agttattatc gatacagcag
     1261 ggcgtttgca aaatcaaaaa aatttagctc atgagcttga aaaaattgta agaatttcaa
     1321 acaaagcttt agaaggcgca ccccatagaa aaattttagt tttagatgga acacagggaa
     1381 atgctggaat tttacaagct aaagctttta atgagcttgt aaaacttgat ggtgtgatta
     1441 tcacaaagct tgatgggaca gctaaagggg gtgcactttt tagtatagca agagagcttg
     1501 agcttcctat tttttatgta ggcgtgggtg agcaaatgac ggatttgcaa gaatttaatg
     1561 caaatgctta cttagatact ttattagatc ctatttttga ataatggcaa aaaataaagc
     1621 actttttgaa tgtcaagcct gtggaaatca acaaagtaaa tggcttggaa aatgtcctga
     1681 ttgtggagct tgggatagtt ttgtagaatt aaaagctgag cggattaaag ttttaaaaga
     1741 gcttgcacaa gttagtatga aaacaagtga agctgtttgt attgaagatg tggagttaga
     1801 acattttaca agatacagca cagatgataa tgagcttgat ttggttttag gtggagggct
     1861 tgttgaaggt tctttagtgc ttataggcgg aagtccaggt gtgggaaaat ctacgctttt
     1921 gttaaaaatt gcttcaaatt tagctaaaca gggtaaaaaa gtgctttatg taagtggcga
     1981 agaaagtaaa gcccagatta aattaagagc tgatcgtctt gaggctaata ctccgaattt
     2041 atttttactt actgaacttt gccttgaaaa tattttagaa gaattgcaca aaaaagatta
     2101 tagcattctt atcgttgatt ctatacaaac tctatattca aataaaatca cttcagcagc
     2161 aggaagcatc actcaggtgc gtgagattac ttttgaactt atgcgtgtta gcaaggctta
     2221 taatatcagt acttttatca tagggcatat tactaaagaa ggtgctatag cagggcctag
     2281 ggttcttgag catatggtag atgtggtgct ttattttgaa ggagatgcta ctaaagaaat
     2341 cagactttta agaggcttta aaaatcgttt tggtggaacg aatgaagtag gtatttttga
     2401 gatgactgct aagggtttga tcagtgcaaa agatttggca aatcgttttt ttactcgtgg
     2461 aaaggctatt tcaggaagtg ctttaggtgt tgtgatggaa ggatctcgtg ccttggtttt
     2521 agaagttcaa gctttagtgt gtgaaagttc ttatccaaaa cgcagcgcta caggatatga
     2581 aaaaaatcgc ttagatatgc ttttggcttt gcttgaaaga aaacttggaa ttcctttagg
     2641 gcattatgat gtatttgtaa atattagcgg cggagtaaaa gtaagtgaaa ctgctgcgga
     2701 tttggctgtg gttgctgcga ttatttcaag ttttaaaaat cgccctttga gcaaagatag
     2761 tatttttata ggagagctta gtttaaatgg agaaattaga gaggttttta gccttgatac
     2821 gcgtttaaaa gaagctaaaa tgcaaaaatt taaaaatgcc attattcctt ctaagccttt
     2881 ggaagatata gggcttaagt gttttgttgc caaagaactt tcacaagttt tagaatggat
     2941 gtaaattttc attaaaatat aagtaagatt ttgctaaaat tccgagttta gaataaaatt
     3001 tttgaggaaa ccatgaaaga tttattttta tttagctctt tgcttgatgc aagtcatact
     3061 ttttcttatt tttttcacat aggtttggta gctttaattg ctgttatagt ggctatgatg
     3121 gctactcgtt ctatgcaact tgttccacgc ggtatgcaaa atttaggcga ggctttttta
     3181 gagggagttt tatctatggg tagagatacc atgggaagtg aaaaaggtgc aagaaaatat
     3241 cttcctttgg ttgcaacttt ggggattata gtgtttttta gtaatattat aggcataata
     3301 cctggttttc actctccaac tgcaagttta aatttgactt tgtccttggc tattatagtt
     3361 tttgtatatt atcattttga gggtattagg gcgcaaggtt ttgtaaagta ttttgctcat
     3421 ttcatgggac ctattaaact tttagctcct ttgatgtttc ctatagagat agtctctcat
     3481 ctttctcgtg tggtttcttt gtccttccgt ttgtttggaa atattaaagg tgacgattta
     3541 tttttgatgg taattttagc tttagttcct tatatagctc cacttcctgc ttatgtgctt
     3601 ttaactttta tggcattttt acaagctttt atttttatga ttttaactta tgtatattta
     3661 gcgggtgcaa ctgttgttga ggaaggtcat tgatctatat tttagaattt ttcaaaggtg
     3721 catctttagc tttaatgctt tttggtgcac ttttcttctt ttttaaatat aattcttttt
     3781 tctatctttg cttgggtatt ataccaggtt tgcttttatc tttaattttt gttttactta
     3841 tagaaaacca taagctaaaa aatgaaatta agttaagata aaagcaaaaa atagtttatt
     3901 ttctaagcat gaagctcttc tttaagcaaa tgctttacag cttcataaat tttaatagcc
     3961 gctttggatt tattcatagt ataaagatga attccatcta cgccacttgt gattaaatcg
     4021 acaatttgat cgcaagcata agcgatacct gcatcttcta aagccaaagc attattttca
     4081 tatttttcta aaattttaac aaatttagga gggattttag ctccgcaaag ttgagaaatt
     4141 tttaaaacct gtcttttgtt agtaataggc ataatacctg cgtaaatagg tatgtcaata
     4201 cctgctaaag cacaattttg tttaaaagta taaaaatctt cattatcgta aaaaagttga
     4261 gtaatgagct tgtctgttcc tgcatttacc ttagttttaa gatagtgtat atcctcgatg
     4321 aaatttttag attcattatg tttttcagga tagcatgcgg cataaatttc aaagtattct
     4381 tgttttttta taaaagaaat taaatcacta gcataagaaa aatctttact tttttctaaa
     4441 ttttcacata tatcgcctct tagagcaaga atttgattaa gatttttttc tttgcatttt
     4501 tgaagtatct gagtgatttt ttctttacta gaatggatgc aaggtaaatg cactatgcta
     4561 ggaatttgat attcttcctg gattaagctt gcaacttcta aagtattttg tgagttaata
     4621 gagcctccag ctccaaaggt tacgctgata aaattagggc ttaattgccc taaatcatct
     4681 aagatagcat gaagattttt gatattttca tcctttcttg gtggaaaaac ttcaaaagaa
     4741 aaactacaca tgaaaactcc ttataattgt tctcgtattt tttgcgtagc cgtaactaaa
     4801 tttttaagag aggctataac ttcttcatag gctcttgttt taagtccgca gtctggattg
     4861 atccaaattt gctccttagg taatttgttt aaaatttttt ctatagttaa acttaattct
     4921 tctacgcttg gaactctagg gctatgtata tcataaactc ctggtcccac ctcagtttta
     4981 aaacgaatag cttttagggt atctaaaaga cttaagtttg atcttgaagc ttcaaaagaa
     5041 atcacatcag catccatagc gtcaatttct tttaagatat caccaaattc actataacac
     5101 atatgagtgt gaatttgagt tttagctttt accccgctat gcacaagatt aaaagcagga
     5161 atagcccaat ctaaatactc actatgccaa tcactttttc ttaaaggcag tttttcacgc
     5221 aaagccgctt catcaatttg tatgattttt atacctgcat tttcaagatc taatacttca
     5281 tctcttatag ctaaggcaat ttgctcagtg ctttctttta gactgatgtc ttctcttgga
     5341 aaggaccaat taagtatggt tacaggtcca gttagcatac cttttacgat tttttgactt
     5401 aaactttgtg caaatttaga ccaagctaag gtgataggct ttgtgcgtga tacatcaccc
     5461 caaattacag gaggcttaac gcaccttgtg ccatagcttt gaacccagcc attttgagta
     5521 aataaaaagc cctttaaatt ctctccaaaa tactccacca tatcatttct ttcaaattct
     5581 ccatgcacta aaacatcaag tcctatttct tcttgaattt gtatgcattc tttgattttt
     5641 tgttggttaa attcagtgta gttttgagct gaaatttttt cttgcttaaa ggcaaggcga
     5701 ttagatctta catcggtact ttgaggaaag gaacctatgg ttgtggttgg taaaagaggg
     5761 agttttaaaa attctttttg gattaaggca cgttctttaa aactaggcgt tctggtaaaa
     5821 tcttcttttt ttaaagcctt aagccttgct ttgacttttt catctaaacg ctctgggata
     5881 tttttaaaaa gctcttgatt ggctctaaag agcggatttt cttcgctaga atttagaatt
     5941 tcttttaaat ctttaagttc ttgaagtttt tctttagcaa aggcaaaaag tttaagatag
     6001 cttgaatcta atttgctttc aaattcagtg ctataaggca catgcaaaag cgaacaagag
     6061 gtgtttaaga cgatattttg tgtatatttt tgaagttctt taataagctt taggctttta
     6121 gcataatcat tagcatagat atttttgccg ttaataagac ctgcaaaaag gattttatct
     6181 ttagcaaagc cgtatttttg aatcaaggct aagctttgtt taccttcgat aaaatcaaga
     6241 cccaaagcat caaatttgct ttctaaaagt ttaggataaa tatctcttaa gtctccaaaa
     6301 tagctttgaa gtaaaatttt aagatctttt ttgtgattta aaagttcttg gtaaaattct
     6361 tcaaacaaag cgatatcttc cttgcttaaa tcataaacca aataaggctc atcaagttca
     6421 agccatgtca ctttaagttc atttagttta tcaaaaagct ctatgtaagc gtttaaaagc
     6481 ttttctttag cgagtttttg agttttttca tctttaaagg caatgagttt aaaaagtgtg
     6541 aaaatgccta ttaaaacagg cttgctttct atgccaagct ctttagcttc aaggtattct
     6601 ttaaaaattt tatcccctgt taaagctata atatcagcat tatcgcactc aggcaccaaa
     6661 taatgataat ttgtattgaa ccattttttc attgctaagg ctgtaacatc tccattttct
     6721 ccttgataac ctcgactttg agcaaagtat tcatctaaag catctaaatt taaattttta
     6781 tactttgtat gaacaatgtt aaaaagcaca gctgcatcta agacattatc ataaagtgaa
     6841 aaatcattac tagggataaa atcaatgcca gctttttgaa tttcttgcca gtgtctaatc
     6901 cttaaatcct tagcactttt taaaagctcc tctttagaac tttggttttt aaagtatttt
     6961 tcaatagcaa attttaattc tctatttgca cctattcttg ggtaagaaat gattgaattt
     7021 ttcatattta ttctccttaa aatgtaggga ttaaagcacc ctgatatttt tcttctataa
     7081 attttttaac ttcatcgctt tgcaaggcct ttactagggc tttgatttta ggaaggtttt
     7141 cattaccttc tttaacagcg atgatattgc catattcact atatttactt tctgtataaa
     7201 gcccatcttt tacagggttt aaacctgcta aaatagcaaa attgctatta ataagagaat
     7261 aatctacatc atttaaactc cttgtaagtt gagcgtcttt taactctaca aatttaagct
     7321 tcttaggatt tttagtgata tctaaaggag tgatgagctc attatcctta acttctataa
     7381 gtcctttgct tgctacaatg cgtaaagcac ggctttcatt tgtaggatta ttgggtatag
     7441 aaatgctttg tccttcctcg gggttaaatt ttttatgttt tttagaatac accgccatag
     7501 gttctatatg gatactggca acttttacaa gatgggtgcc ttgcctttga ttgaattctt
     7561 ttaaataggg ttcatgctga aaataattag catctaactc accattttca accattacat
     7621 tagggattac cccatcattg aattcataaa tttttaaatc ataaccttgt ttttgaagta
     7681 ctgattttat aaatcttaaa atatctgcat gaggtgttat agaagagcca actttaagtt
     7741 cttcatttgc ccatgcaaaa ccggtaaaaa gagtagcgac gcaaaaagct ttagtaaata
     7801 aagtcatttt ttctccttta cgcaaaacta aatttttcta tcaagtcact atgataaata
     7861 cttgccacat caggatgaga gcgtatcatt cttttaaaat aattacttgc aacatttctt
     7921 aaaagtggat ttttaggatc agtatccaca cctttacttt ctttagcaag ctctgggttt
     7981 aatttaaaaa tgggtatgtc tttatcaagc tgcactccaa gaaaataagc tatgctaaag
     8041 cgttcttttg ggcttaaatt cacgcggtga atagtagctt ttaaatagcc attggtagct
     8101 agttctaaaa attctcctat attaactaca acgctatttt caagtggggg tatactaagc
     8161 catttaccat ctataaaagc ttcaagtcca ctttgttttt cttgaaaaac aaaagtgata
     8221 agcccaccat ctttatgtga acctacgcct tgagtgatat tttttgagct ttttggataa
     8281 tgtatgattt tacaatgttc gtaagaattt tctccataaa gtttatcaaa agcattgcta
     8341 ggtagatcaa gaacttgagc aaaggctttt aaaagcttta aacaagcttt tttggtttgt
     8401 ttgtgccaag ttaagaaagt ttttttaagt tctggaattt cactaggcca aagattagga
     8461 ccttctagtc tttgccataa gggtgagttt aaattccagt ttaaagcatc tctttctgtg
     8521 cctatatcca gttgttctct ataatcctta gttcctgctg tgtattcaaa accttcgcta
     8581 gtataacctc taaattgagg agaatgtacc atagaaataa gctctttaga acttctagaa
     8641 agattaaaaa attctttgcc aagtttgaat aatttctcgt ttaaattttt atctatactg
     8701 gtattgataa gataaaaaaa acctatttta gaagcaattt ctcttaaatt tttaagaaaa
     8761 gtgcttttat ctttttcata agcttgtaaa tcaagtatag gtaagttcat ttttgctcct
     8821 taaattaaaa ttaaggataa gaagatattt tgaattaaat tttatttaga gaaatttttg
     8881 taagttaaga ttttaaatga gtattttgaa aaaataaact tttttgactt tcttacacat
     8941 tatatctcct tatccacttt ttggaccttt ggaaacataa tgttaagcca aaggacgcac
     9001 tagatactac acatctcgca catcagtttc attttttctc cttttaaaat aataaaattt
     9061 caaaatcata tataaaaata tattaattaa agcttaatcg tctaaaaaat aaagattctt
     9121 tttaagcatt ctcgagtttt aattctttgt tattcattat gctaatacct agatttaaaa
     9181 ccttttgggc aatttgtttg gcttcatcta aagaatgcat tgcgcaagtt ccgcattgat
     9241 agatattaag ttcaggaatt ttgctttgat cgcttacgct taaaacatct ttcatagctt
     9301 cttcccaagc ttttgcaaca cttttttcat ctggtgttcc aattaaactc atataaaaac
     9361 ccgtacgaca gcccataggt gaaatatcaa tgatttcaac cgaatctgaa ttaagatgat
     9421 ctctcataaa tcctgcaaat aaatgttcta aggtatgtgt acctttttcg ctcataatgt
     9481 ctttatttgg tacgcaaaaa cgcaaatcaa atacactaat atcatcaccc ttaggtgttt
     9541 tcataacttt agctaaacgc acagcgggcg ctggcatttt ggtatgatta actttaaaac
     9601 tatctaataa tggcatttta actccttaaa tataaattgt ctaagaatta tagcatttaa
     9661 agttaatatt taaagccttt ctaaaagaaa aaaagataaa ataaaacatt taaaaattca
     9721 aggaaatttt atgttcgaag tagttatagg tcttgaagtt catactcagt taaatacaaa
     9781 aacaaaaatc ttttgctcat gcgcaacttc ttttggagaa gctccaaata ctaatgtttg
     9841 tcccacttgt ttggccttac caggagcttt gcctgtttta aatgaagagg ctgtaaaaaa
     9901 agctatagct tttggaaaag ctgtcaatgc agcaattaat aaaaaaagtg tttttaaccg
     9961 taagaattat ttttatccag atttacctaa ggcttatcaa atttcacaat ttgatatccc
    10021 tatagtagaa aagggtgagc tttttatcaa tgtaaagggt gaaaataaac gcataggtat
    10081 tacaagagca cacttagaag aagatgcagg taaaaatatc cacgaaaata atttttctaa
    10141 agtggactta aatcgtgcag gaactccttt gcttgagatt gtcagtgaac ctgagcttag
    10201 aagtagtgat gaggcagtag cttatcttaa aaaacttcat tctattatac gctttttaga
    10261 catttcagat gcaaatatgc aagaaggaag ttttagatgc gatgcaaatg ttagcataag
    10321 acctaagggt gatacaaaac tttatactag agtagagatt aaaaatctta attcttttcg
    10381 ttttatccaa aaagctatag aatatgaggt aaaaagacaa agtgaggctt gggaagatgg
    10441 aacttacgaa caagaagtag ttcaagaaac cagacttttt gatacaacaa atttagttac
    10501 aagaagtatg cgtggtaaag aagaagcggc tgaatatcgt tattttccag accctgactt
    10561 gcttcctgtt ttgttaaaag atgagttttt ggatattaaa attcctgaac ttcctgatga
    10621 gaagaaagca cgctttatag acgagcttgg tataaaagaa agtgatgctg aggttttaat
    10681 cagttcttta gaaatgagtc gtttttttga aagtcttatt tctcaaaatt taaatcctaa
    10741 gctttgtgta aattggttaa atactgaact tatgggactt ttaaaaggag aattgactat
    10801 agaaaattct cccgtagatg ctcaaaagct tggagtttta attaaacgta tagaagatgg
    10861 caccatcagt gcaaaagcgg ctaaagatgt cctagctttt gtatttgaaa atactagtgt
    10921 ggaaattgat gaagctatag aaaagctagg acttaagcaa gtaagtgatg attcagccat
    10981 agaagcggtg attgaacaaa ttttaaatgc aaatgccaat aaggttgcag agtataaaag
    11041 tggtaaagac aagctttttg gattttttgt gggtcaaaca atgaaagagg gtaagggagc
    11101 ttttaaccct gcaaaagtaa atgaaatttt aaaaacaaag cttggttgat gcgtatagcg
    11161 gttattggtg cgggaaaatg gggcagtgct ttacatctag ccttaaaaga aaatcacaat
    11221 tgttttatca gttctttgca tcagcgtgat ttagaagatt ttgttagcat aaaagaagct
    11281 ttagaatgtg aatatcttat ttttgcttta agttctcaag ggatgcgtgt atggcttaaa
    11341 gaaaatttca tcaacaaggg acaaaaaatt ttaattgctt caaaaggcat agaagatcaa
    11401 agttgtcaat ttttagatga aattttttta gattttgtac caaaagaaaa tttttgtgtt
    11461 ttaagcggtc cttcttttgc tgctgaagta atgcaaaaac ttcctactgc tttgatgatt
    11521 agcgggataa atcaagagct ttgtaaaaaa tttgcaagtt ttttccctga ttttattaaa
    11581 acttatattg ataatgatgt tcgtggtgct gaaatttgtg gtgcttataa gaatgtttta
    11641 gcaattgcaa gtgggattag tgatgggtta aaacttggta ataatgcaag agcagcactg
    11701 atttcaagag gacttataga aatgcatcgt tttggtaaat tttttggcac taaagaagaa
    11761 acttttttag gattgagtgg ggcaggggat ttgtttttaa ctgcaactag tgttttatca
    11821 agaaattata gagtgggttt aaaactggcg caaaatcaaa aattagatag tattttagcc
    11881 gaacttaatg aagtagcaga aggtgtaaaa actgcttatg ctatagaaaa actagcaaaa
    11941 atgaaaggaa tttatacacc tattgtaaat gaagtagtgg caatttttaa gggtaaaagc
    12001 gtgcaagaag caacacagaa tttattaaag caaaatgatt aaggaaaaat catgataatt
    12061 aaaaatgcaa aaatttatgg agattcttta caagatatag agattaaaga aggaaaaatt
    12121 accaatattg gttctaattt acaaggcgaa gaaattttag atgctaaagg tatgacttta
    12181 cttccatctt ttgtggattt gtgtgtgagt ttaaaaaacg ataaattttc tttagctaat
    12241 ttagagcttt tagaaaatga gtgtctaaaa ggaggaattt ctagtatagt tttgcgtgat
    12301 tgcatggatt ttgatgaaga aagttttgct ttatttttac aaaatttagc tcaaagaaag
    12361 atgcaaattt tttcaagtgt gcgggttaag gatacaaacg gcaagcttaa aaatttagcc
    12421 actcttttaa ataaaggtgc ttgtgctcta gaacttgaca gctctttgga tgcaaatact
    12481 ttaaaagtaa gttcacaata tgcttttatg aaagactctc caatttttgt gcgttgttat
    12541 gataaggatt ttgatgataa tggagtgatg aatgattgtg aaatgagttt tgagctaggg
    12601 cttataggca tgagtaaaat cgctgaaact agccagatag ctaaaatgaa agaattggct
    12661 aaattttata aaaataaagt tatttttgat cttttaagtt tgaaagattc tttagtatta
    12721 ttagatgaaa aggatttaaa acttgtaagc attcatcatc ttatcaaaga tgatagtgct
    12781 tgtgaagatt ttaatacggc tgcgaaactt atgccacctt taagaagcaa agaagatgtt
    12841 ttggctttaa gagaggcttt aaaagaagga aagattagct ttttaacttc cctgcatagt
    12901 gcaaaatcaa tttctttaaa agatttagct tttgatgaag cggcttttgg aattcatagc
    12961 gtatgcgaat ttataagtct ttgttatact tttttaatca aagaaggatt tttaaattgg
    13021 caagagcttt gtcgatttac aagtaaaaat cctagtgaat ttttaggttt aaatagtgga
    13081 gttatagaag ttggcaaaga agctaatcta gttctttttg atgagaatga agaaattttt
    13141 gctccaaaaa gttctcttta ttctgaggat aaactttttg gaaagattaa aatgcatata
    13201 attaaaggaa aaaatatttt agaaaaataa gctttactta aattcctaaa gatagtttaa
    13261 atcctaaaaa tacaagtgct gccataatac cagcggctgg taaagtgata atccaagcca
    13321 atcctatagg cttcatcata atccaatttg cgtttttatt atacactcct atacccaata
    13381 tagcacctat gagtatatgg gtggagctaa caggaattcc aaattgtgta gctaagagta
    13441 taactatgct tgcaccaagt tctgcagaaa atccagtagt agggcgtatg gttgcaagtt
    13501 ttgaacccac tgtagtaatc acttctttac ctaaaaacca aagccctaca actagagcaa
    13561 ctccaaacat agctaaagca gcaaaaggta caggagaagt cgcgttaatt gtgccgtttt
    13621 ttaagacatc taaaatcgct gcaaaaggac ctatagcatt ggctatatca ttggctccgt
    13681 gtgaaaatgc aaaactagag gctgtaaata tttgaaacca tgagaaaatt ctatcagtgg
    13741 ttttattaag ttctgttttt ttaacgattt tgactatagc aaatgttata acataactta
    13801 tagttcctat aattccaata atccaaaagt tttgtaaaat atccaaagtg ctaacattat
    13861 ttaaaccttt aaataaaaac attgccgaaa tgatagcagc agcaatacaa gcaatgattg
    13921 gcatatgagt ttttaaaata gagtaaatat ctatatcttt ttcttgatcc ttaaattcct
    13981 tcattttatt tctatagaaa ttattttcct gttcttcttc atccaaagct atagcggaaa
    14041 gttctttgat ttgttcttct tgggattttg tttttaaatt taaaaagtat tcttctttga
    14101 atttttttct ttcttttttg atatttttca aatcatcatt tagtttttct gatggtttta
    14161 aaattttctt atcaatatat gaataaataa tataagctac aataccccct aaaagaggag
    14221 aagctaccca agaaatagct attcttaaaa tttcgctcca tttaaccata gagagtgttt
    14281 ggatcccatc aaattttaaa agccccatca taatactagc acctacaatc ccaccaacta
    14341 tactgtgcgt ggttgataca ggtaagcctt tcttggttgc aataaaaatc caaaccccag
    14401 agcttaaaag tgcagcaagc ataatgataa caaaaagcat aggatctaaa gaatttggaa
    14461 aaataacaat accgctgcgt atggttttag taacttctgc gcctgcgaag attgccccgc
    14521 ttagctcaaa aacagctgct ataattaaag cttgtttaat ggttactgtt tttgcgccaa
    14581 cgcttgttcc aaaagaattg gctacatcat ttccacctat attaaatgcc ataaaaatgc
    14641 caaatataga agcaagaata aaaagaatca attgatgttg tgaaatataa ccaaatcccc
    14701 aaataacaaa tgcgatagta ctgataataa aaataacaaa agctatgagg ttgtcttttt
    14761 gcattaataa ccctttttta ttttaattat acacttattt actttaaatt tgctaatttt
    14821 attttttagt ctttgtggaa tttttattta tattattttt ttataataaa tacttaaaca
    14881 agaaataata aggaatataa gaataatgag gggtattttt tatataatag cattgttttc
    14941 tttactcaat ggcgatgaac ttacagaggc tttagcaaaa aataataatc aaaattcttg
    15001 ggagcacttt gattataaaa ataccaaaga agctccaaaa attcaagaag agaatgtgga
    15061 ttttaaaagc acttttgata gcttactttc aaaaacttta gaaaataata atggtataga
    15121 taaaacagat gggaatttag attttcaaaa tgaaaatgtg caggttaaaa atttaagttc
    15181 tctttatgag ggggagaata attctttgct ttttcaaaaa gaactttttg tggctcaaaa
    15241 taattataat tactcagggg gtttaatcaa tcgttatgaa aaagatgatt ttttatttgg
    15301 agttaatggt tttattgata aacaaaagga acaaaaagat actaaaagct ttggtacaga
    15361 gtttggttat agtaaattta taaaggctta tagtaattat tatataccca atgaagcaga
    15421 aaaaaattta cagcttggaa tgagttttgt aattccaact tataccgctt ttgcttttga
    15481 tataagtaag gataatgata aaactaatta tcaagtatct tactctcctt atagtgtatt
    15541 tagtttaaat ttattgcgtc gtgattatag tgcaagagag actgttgatg atactgttgt
    15601 tcaagttgga tttagtttta atttcaatga aagtttttta aaacaattta ggaaaaaaga
    15661 taatacttta gaggaggtta atcgatatga tttcctccaa agaactcatt agttcattcc
    15721 agcattatga aatttttctg gattgtccat agcgtagcgg aatttttccc aatcaatttg
    15781 tttatcccag atggcaacga ttaaggctgc tactgaattt ccacaaagat ttccaaccgc
    15841 cctcatttca gacataaatt tgtcaacacc taaaagaaca cctatagcag ctactggtag
    15901 aacttgtgct aaggttgcat ttgcttctga aatttccata tttcctagag ctgcaagcgt
    15961 acttccaagc actataaaac ctgaaccagt tacacccact gcaccttttg aagctatcat
    16021 taatactatt aaaatactga tttcgtgtgc taaacttaaa tttacattga aagcttgtgc
    16081 tagaaagatt aagctcatag ctagataaat atttgtacaa tcaagattaa aactatatcc
    16141 cgttggtaaa acaagtccga ctgttgcttt agaaagtcct gctttttcta gttttctcat
    16201 taaaggagca agtgcagact cgcttgagct agttgcaaaa acgatcaata cttctcttga
    16261 gataaatctc ataaatttga agatatttac ttttgcaaaa taacaaatca gacctaagat
    16321 tccaaatata aaaacaagac atgaaatcag cattactaaa agtaaatatg ctaagttgat
    16381 caaagagcca attccgtatt gagctatgag tacagccatt gctgaaaagg cggcaatagg
    16441 actaaaatac ataatgattt gtagaatttt aaaaacaaaa ttttgtacca cttcaaaaac
    16501 tctttgaatt gcctgtttat cttctgttct cattaaagaa ataatcaaag cagtaattat
    16561 agcaataact aaaacttgta tggtttttcc ttctgtaaaa ggcgtgataa tatcagtagg
    16621 catagcatct tttaaaatat gcataatctc agagctcgca cttacttctg tggtttgaga
    16681 aatgtatttt tgaacgcttt ttgtatcaag ttgacttgga ttaagattca ttccatgacc
    16741 tggttgcata acatttgcca taaaaatacc tatagcaagt gctaaagtac ttacaacttc
    16801 aaagtaaata accgctttag caccaatact acctactttt tttaaacttt caagactaat
    16861 gatgcctaaa accaaagtaa caaaaataat aggacctata agaaccttta aagcacctat
    16921 aaaataatca actcctggtt tgctagcaat ggctaattct ttatctatat agccaagtac
    16981 aatacctgca ataatgccta taatcaccca aaatccaaga cttttgataa tacgtttata
    17041 taaaggcggt tttctttcag ctaaagtttg acttaaagtt tccaagttta ttcactcctt
    17101 ttgatctttg taaaatataa ttttaacaat gcgtattgta aattttaaca aaaaaacaaa
    17161 tc
//
LOCUS       DAZBIH010000027        16804 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.027, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000027 DAZBIH010000000
VERSION     DAZBIH010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16804
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.027"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..942
                     /locus_tag="ACHFOB_000731"
     CDS             <1..942
                     /locus_tag="ACHFOB_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0098561 - methyl accepting chemotaxis
                     protein complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN5799545.1"
                     /translation="DEFGQISNAINENILATKRGLEQDNQAVKESVQTVSVVEGGNLT
                     ARITANPRNPQLIELKNVLNKLLDVLQARVGSDMNAIHKIFEEYKSLDFRNKLENASG
                     SVELTTNALGDEIVKMLKQSSDFANALANESGKLQTAVQSLTTSSNSQAQSLEETAAA
                     LEEITSSMQNVSVKTSDVITQSEEIKNVTGIIGDIADQINLLALNAAIEAARAGEHGR
                     GFAVVADEVRKLAERTQKSLSEIEANTNLLVQSINDMAESIKEQTAGITQINDSVAQI
                     DQTTKDNVEIANESAIISSTVSDIANNILEDVKKKRF"
     gene            complement(985..3351)
                     /locus_tag="ACHFOB_000732"
     CDS             complement(985..3351)
                     /locus_tag="ACHFOB_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein"
                     /protein_id="HFN5799546.1"
                     /translation="MRILFLILLSFLNAFAFELVLNTGRENNQAFAVLHASNDLEFTC
                     QKFITEAKVHFECDIVGMVDNKLKDQSFSAFDLKFIQEAQKIKMIILPKIQARMFDTS
                     QNIYIDKELSSSSSHKSKAFTFIFTPELAPIKDYDGLDFNINFPHESLPYVGALDLNS
                     DPVVIPQSADINTYLRIKKEYDKANYNQVVIDAQNAINRYRGSIFTSEFILYKLRAQN
                     KLYTQDPSMRDQQILEKMIDDAKNWTRTFTSDKNFSEVLHIMLRTYIALAQRADVEYT
                     MSILDNEQPNNYFTQLSKLDYADYIYNLNEKEKAVNIYENTYFNTKNLDLAARAAMSL
                     AKNLLSNEQVNKAIEYINTILKANPEYFGKDIPRSLELAKLFNQKGQFDISASIYEDA
                     FAKMSKLDPSYEETLKDLALVLSHANRSSDAKKYLDLYMDDYLDGKYLDEIKKASDEV
                     FFALGDNNASFLHQRYTDLMKQYANKDENIANKALDEDVALYYKEGNFSAILAYKDLI
                     ESKKIPNATQFLEKAAINDLKNAIKADNCINAANIFMRFSAYDIGQKIENKKQMLACL
                     IRTSNVEQALDYIDKNYNEDSIFYGLQKASILFDNKQYPQVIKISKDIANSRILKSDD
                     ENFKAYYLQFLSLLRLNDYNQAIKILQILESFPMNFSMVEAYDALLSYANDHNMQTTI
                     LTYAPKAIDYQNFKGINLFSPNLEFIYLDALTKINKNEESLAVLTDLLKLKLSDEDRA
                     RALYIQALTYERMQNIQAEKESLKQCLEIKSASNWQNLCKSKNQILNQ"
     gene            complement(3373..4761)
                     /locus_tag="ACHFOB_000733"
     CDS             complement(3373..4761)
                     /locus_tag="ACHFOB_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit N"
                     /protein_id="HFN5799547.1"
                     /translation="MLNNFLNLELLNISLSYPFLFLITTAIVLLLCSGFWKFHRSFYI
                     GISSLSLIVSAFLILNNANAQGLEAKAFLATLNNDIVSFYASLVILCFSFLYLLMQKE
                     ENQGEFYALFLFMIASLLLMVSSSNLVLIFIGLESSSLALYTLIAMRGSDNAISSAIK
                     YFSVAAVGAGFFVMAVAFIYLKTGTLDLSANLALKNEFQKDPMLLGAGVMIFVLCAIK
                     LSLAPFHFWLKDVYYAAHTNLVAFISVVPKVAMLVVVIRLFDFLNNTGFEYIIIVLAI
                     FSMLIGAFAALSQNNIKKMFAYSSVVHSSLVLVACIPLLKEQNFDGILLAIFGYWTLF
                     AFANYAVFMILSNYENNSYESLNGLLVKKPLIAFCLSISVLSLAGIPPFGVFWGKFMI
                     LNTAILNGYWYLALFVALSSVIMLYAYLKILIHALFMKNDRVHNIKFSFIQNFILAFC
                     VCVSTFVILLML"
     gene            complement(4751..6238)
                     /locus_tag="ACHFOB_000734"
     CDS             complement(4751..6238)
                     /locus_tag="ACHFOB_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit M"
                     /protein_id="HFN5799548.1"
                     /translation="MLNYLIFFPLISAFVVLLLNRGGVKVFSVVVSFMILALNLDIFA
                     DFLQGVSFDYNLSFKILKFFSFHVGVDSIALVLILLSSLMIFLSFLFLKLEQKALISC
                     IFFLEFAIMGLFSAKDGLLFYVFWEFSLLPLLYIMGVYGKDFRAGVKFFIYAFAGSIL
                     MLVALIYQAYLNYQLLNIFTFDLEIWKNNASAVNFTEQLLLFGAFFIAFAIKAPLFPL
                     HTWAPKVYANSPILVSVMLVVFKMAPFGFLLFCLPLFPDASVYFMPLIVALCIVSIVY
                     NALIAYRAENIKELIAYSSISHLGVMILGIFSLNALGISGAVFYMFAHGIVTGALFLM
                     VELLYQRYHTYDISFYHSLAKKAPLFSIFFMLILLASVSLPLTVSFVGEFLILLGIAK
                     INLFYALLAGLVIILGAIYMFAVFRKIFFMQKQSFIEGFSLLFREIVALVCIVVMIFG
                     LGLMPNILLKPIQKDVDNLIKTMNIRAVEQNTLDFLSKIGEANVK"
     gene            complement(6240..8030)
                     /gene="nuoL"
                     /locus_tag="ACHFOB_000735"
     CDS             complement(6240..8030)
                     /gene="nuoL"
                     /locus_tag="ACHFOB_000735"
                     /EC_number="7.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit L"
                     /protein_id="HFN5799549.1"
                     /translation="MQNLALISLFSPFVAFLFASCFALSEKKQFVGIICSLLVALSAF
                     CSLYLLFCNEAFNVSLFEWFAGVNFGFDIDAISLTMMSVVGIVATCVHFYSIFYMAHD
                     EGFNKFFAYLGLFVFSMLFLVMSDNFLGLFVGWEGVGLCSWLLIGFWYKNDTYSFAAN
                     EAFIMNRIADLGMLLGIFWLYLQAGTLKYDEVFSMAQSLDHNALILIATCLFIGAMGK
                     SAQFPFHTWLADAMAGPTPVSALIHAATMVTAGVYLVIRASTLYDLVPEVSYIIALLG
                     AFVAIFAASMALVVRDLKRIIAYSTLSQLGYMFVAAGLGAYGIALFHLATHAFFKSLL
                     FLGAGNVMHAMNDKLDIKKMGGLFKPLKITAILMCIGSLALAGIYPFAGFFSKDLILG
                     YSFISFHHGIFLVLLIAAFLTAFYSFRLLMLVFFTPARHDEHPHEASKIALLAMSPLM
                     VLAIIAGFFEHSFFEYLSTKLVFIDAQNQIVMICASVAAILGAILAIFAYKNSWFKES
                     IEENKIHKLLSNDYFIPQFYHQFIVSKYESLCAILKHCDLYIFDRIVEKIALYSQNIS
                     QKMIMPNSLNLMLRFLVAAFVILLILVWMV"
     gene            complement(8032..8328)
                     /gene="nuoK"
                     /locus_tag="ACHFOB_000736"
     CDS             complement(8032..8328)
                     /gene="nuoK"
                     /locus_tag="ACHFOB_000736"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA];
                     GO_process: GO:0042773 - ATP synthesis coupled electron
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoK"
                     /protein_id="HFN5799550.1"
                     /translation="MIEKYFFVAILMFVIGLVGILKRQNLIMLFISSEILLNSANLAL
                     VAASKMHNDLNGQVFALFIMGVAACEVAVGVALCVLWYRRKGTLELKSLKEVEA"
     gene            complement(8325..8843)
                     /locus_tag="ACHFOB_000737"
     CDS             complement(8325..8843)
                     /locus_tag="ACHFOB_000737"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit J"
                     /protein_id="HFN5799551.1"
                     /translation="MIENLAFVFFSVVVLGFFGIAVLSKNMLYSLSALAGGMVFLSGF
                     YFLLDAEFLGVIQIIVYSGAVLGLYSFAMMFFDASKEFKEQLKAKKSFFTLVVLSTIL
                     LLAMLIGFKYQNISTDLPLNDPALFDFNKQLALAIFSKYLLAFEFIAILLLIALVCAI
                     VLTHKELTKEKQ"
     gene            complement(8840..9481)
                     /gene="nuoI"
                     /locus_tag="ACHFOB_000738"
     CDS             complement(8840..9481)
                     /gene="nuoI"
                     /locus_tag="ACHFOB_000738"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoI"
                     /protein_id="HFN5799552.1"
                     /translation="MKNYYLVDEKRKTPVSTWEKISQALRRSVKLELFVGLFVMMREL
                     LKRNNSATIKYPFEKVKLDNRYRAVHRLMRFIESENERCIGCGLCEKICISNCIRMET
                     SLDENGRKKVENYSINLGRCIYCGFCAEVCPELAIVHGTEYENAAEQRSYFGYKQDFL
                     TPIDKLKNQVEFEGAGSLRKDANLWVKKTPNYYDVMIERALENQNTQEQGENK"
     gene            complement(9491..10489)
                     /gene="nuoH"
                     /locus_tag="ACHFOB_000739"
     CDS             complement(9491..10489)
                     /gene="nuoH"
                     /locus_tag="ACHFOB_000739"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit NuoH"
                     /protein_id="HFN5799553.1"
                     /translation="MSDFAFFALETLIKCIIIIAIFASLAGLATYAERKVLAYFQRRI
                     GPDMVGPFGLIQLVADMIKLFTKEDIIPSNSQKFIFAIAPLISAICAFVSLAAIPMLP
                     EFTLFGRVIQPIVADINVALLFVIGTSGLCFYAVFLGGLASNNKWSILGAARGLVSII
                     SYESVGALALIAIIMLVGSFSLVDINNYQSDGFFSWLIFKQPLAFVLFIIALFIETNR
                     TPLCLTENDAEIVAGYGTEYSGLRWGIFFIGEYTSMIAGAILVTLLFLGGFNSFWIIP
                     GWIMMIVKSSFIFFWYFWARAAFPQLRPDQVMKMCYLILIPLAVLNLLITALTVLL"
     gene            complement(10482..12944)
                     /locus_tag="ACHFOB_000740"
     CDS             complement(10482..12944)
                     /locus_tag="ACHFOB_000740"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit G"
                     /protein_id="HFN5799554.1"
                     /translation="MTVKINGIDCAFEEGEYILNIARRNDIFIPAICYLSGCSPTLAC
                     RMCMVEADGKKVYSCNTKAKEGMVVESDLQNLWDERNEIMQAYCINHPLECGVCDKSG
                     ECELQNFTHKSRVNVQKHWIKDTHKPHKHWGMINYDPALCIVCERCITVCKDKIGESA
                     LKTVPRGGDSVDNSFKESMGKDAYAIWTKFQKSLIGPANGDTLDCSFCGECTSVCPTG
                     ALIGSKFQYTSNIWELKRIPASNPHSSDCELMYYDIKQSGISNQKEKIYRVSNDFAFA
                     SLNKAARFAFDTQNEADKDEKAFKELVELFEKNEIKNIKFNSFITNEEALILQNLKKK
                     FNLSLINEEALKFKEFLQEFIANSGEFYSANTQDITKSDFLVVAGMLLRYDAPTLSYK
                     INNALVMNKGSGLYFHPMEDMGIAKYSKNFIPHIHKNGDEEQILYFLLQKFSQDEGIK
                     THLAEFFVSENKEIEESINEEVVEQVIEKDEEGNEIQKEVKKVVPKKVKKIIEVQRSV
                     FAKNLGIDEDKLEDLLLKKANFTLVVGSDFYFHKNAKKLAKLLALIQNTTPFKVFLNP
                     THTNTLGVAMICDLDNNTQEGKTLGYNEKGDFSFSYEEHANLASASLNQQEGTFLNYD
                     KRVVPTNAALEFKGYFLNDLANALGFDEEYTINYTKRLPINKGFSPIDFDHLDNFYTN
                     AGDCKRGYELNLECFKQVAKKEFISPNFENLSLKEDEILLYSANPSYQFGRFSNRASA
                     INEVIFLGVSENLAKEKNLKDKDLVKLKIKDKELSLSVRVDKDIKNGAFLPYFDEKLD
                     TLSFFDERFVVANLEKLGANHE"
     gene            complement(12941..13633)
                     /locus_tag="ACHFOB_000741"
     CDS             complement(12941..13633)
                     /locus_tag="ACHFOB_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799555.1"
                     /translation="MIYDNALCFLDMPSLKNKNLCEKIGVNSINISCLEDKNLKAKFY
                     KCEIASLSFVLALLCKLSDEGQFCDLDEGYLSAESCFGEEEAGEVLAFLKEVKYLIID
                     KNIHSYKDSENIKYFLNFLSVKYGLKILDSDEEECDFKKAKLNTLKELDNYDGLVLFR
                     ANLQDKNLHCSRQFLQIAKCKDQSEVEILAKDFSFKTKLCLDENLQGTIAFLNYENNG
                     FDFTPIRIKEAK"
     gene            complement(13630..13857)
                     /locus_tag="ACHFOB_000742"
     CDS             complement(13630..13857)
                     /locus_tag="ACHFOB_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-ubiquinone oxidoreductase subunit E family
                     protein"
                     /protein_id="HFN5799556.1"
                     /translation="MRRVDLRKSKELFEDLAQIIKEAKQGEVLVVLFEIGDFSPVEKS
                     FSFVKEQGCELLNSLKFNQVDWTIVIKKERV"
     gene            complement(13854..15080)
                     /gene="nuoD"
                     /locus_tag="ACHFOB_000743"
     CDS             complement(13854..15080)
                     /gene="nuoD"
                     /locus_tag="ACHFOB_000743"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050136 - NADH:ubiquinone reductase
                     (non-electrogenic) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH dehydrogenase (quinone) subunit D"
                     /protein_id="HFN5799557.1"
                     /translation="MQIPSKLKPYYENIAFEQEDSKMIINLGPQHPSAHGNLRLILEL
                     DGEQVVKARPCIGYMHRGMEKMAENMIYQEFIPTTDRMDYIAASANNYAYCAAVEKLC
                     GLEIPRRAAVIRMILLELNRITSHLLWLATHALDIGAMSVFLYCFREREYVLDLIEKY
                     CGARLTHSSMRIGGVMLDLPENYLEEMLAFCDKFPNDLKDYEDLLDDNRIWRLRTENV
                     GVVTKEQALNWGCTGVMLRGSGIKYDIRKEEPYLLYNEVEFGVPYATQGDSYARYKVY
                     MQEFRESLKILRQCAMLYKDTSPEILATHPEYVSASKEQILTQNYSLMQHFVLITQGL
                     KPPKGEVYVPTESPKGELGFFIHSDGTGRPYRLKARTPSYWHCAFFEEMLVGTYLADV
                     VAIMGNVNIVLGEIDR"
     gene            complement(15082..15876)
                     /locus_tag="ACHFOB_000744"
     CDS             complement(15082..15876)
                     /locus_tag="ACHFOB_000744"
                     /EC_number="1.6.5.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit C"
                     /protein_id="HFN5799558.1"
                     /translation="MMRKYSDKKNAQTQNYYKDRFYHAPHTVKSDVNESVFKEDFEVL
                     KTQVEILNSFVELDFWVIEIKKEDNVKTLQMLKTLGYLSFTEASAIDFIADKNGFEVF
                     YQLLNLEKKLRVRIKTFVGVKERLQSVAHVFKGANWSEREIYDMFGIFIINHPNLKRI
                     LMPDDWFGHPLLKIYPLKGDEFARWYEIDKIFGKEYREVVGEEQRDSGFVDDKDTLNF
                     ARLYHEVPKGGQKKEVSFKQEYQEDEGVAFVKKVKRDEAKILEKRR"
     gene            complement(15873..16376)
                     /locus_tag="ACHFOB_000745"
     CDS             complement(15873..16376)
                     /locus_tag="ACHFOB_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045271 - respiratory chain complex I
                     [Evidence IEA];
                     GO_function: GO:0008137 - NADH dehydrogenase (ubiquinone)
                     activity [Evidence IEA];
                     GO_function: GO:0048038 - quinone binding [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit B family
                     protein"
                     /protein_id="HFN5799559.1"
                     /translation="MAEHQVNYASGLPVVLTSVDKLVQWGRSNSLWALSYGLACCAIE
                     MMAAGGSRYDFDRFGTIFRASPRHSEVMIIAGTLCKKHAEFTRRLYDQMPDPKWVISM
                     GSCANTGGMFNTYSTVQGVDRIIPVDIYVPGCAPRPESFQFALMILQKKIRKEKASRK
                     IAPKRLI"
     gene            complement(16358..16747)
                     /locus_tag="ACHFOB_000746"
     CDS             complement(16358..16747)
                     /locus_tag="ACHFOB_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-quinone oxidoreductase subunit 3"
                     /protein_id="HFN5799560.1"
                     /translation="MSHIDASHPYFGIFLMLVLASVIFFGLVFLASKIGNNFAAKNRK
                     KLGLGIYECGPIPVKQANKINSQFFIIALIFILLDIEVVFLFPWALIFKDLGWFGFLE
                     VFVFIVLLGVGFLYAYKKGAFAWQSIK"
BASE COUNT         6305 a         3144 c         2055 g         5300 t
ORIGIN      
        1 gatgaatttg gacaaatctc aaatgctatc aatgaaaaca ttcttgctac taaaagaggc
       61 ttagaacaag acaatcaagc cgttaaagaa tcagttcaaa ccgtatcagt tgtagaaggt
      121 ggtaatttaa cagcaagaat tactgctaat ccaagaaacc cacagcttat tgaacttaaa
      181 aatgttctaa ataaacttct tgatgtttta caagctagag taggttctga tatgaatgct
      241 attcataaaa tttttgaaga atacaaaagc ttagacttta gaaataaatt agaaaatgct
      301 agcggtagtg tagaattaac tactaatgct ttaggtgatg aaatagttaa aatgctaaaa
      361 caaagttcag actttgctaa tgctttagct aatgaaagtg gaaaattaca aactgctgtt
      421 caaagcttaa ccacttcttc aaattctcaa gctcaatctt tagaagaaac tgcagcagct
      481 ttagaagaga tcacttcttc tatgcaaaat gtttcagtta agactagtga tgttatcact
      541 caatctgaag agattaaaaa tgttacaggt attataggtg atattgcaga tcaaatcaat
      601 cttctagctt taaatgcagc tattgaagca gctcgtgctg gagaacatgg tagaggcttt
      661 gcagtggtag ctgatgaagt tagaaagtta gctgaaagaa ctcaaaagtc tttatcagaa
      721 attgaagcta atactaattt acttgttcaa tctatcaatg atatggcaga aagtattaaa
      781 gaacaaactg caggtatcac tcaaatcaat gatagcgtag ctcaaattga tcaaactact
      841 aaagataatg ttgaaattgc taatgaatca gctattattt ctagtacagt aagtgatata
      901 gctaataata tcttagaaga tgttaagaag aagaggtttt aaccttagat aactagccaa
      961 aaagctagtt atctctaaat ttacttattg atttaaaatt tgatttttac tcttacataa
     1021 attctgccaa tttgaagcac ttttgatttc aagacattgt tttaaacttt ctttttcagc
     1081 ttgtatattt tgcattcttt cataagttaa ggcttggata tataaagctc ttgctctatc
     1141 ttcatctgaa agttttaatt taagtaaatc tgttaaaaca gctaaacttt cttcattttt
     1201 attgatttta gtcaaagcat caagatatat aaattctaaa ttaggactaa aaagatttat
     1261 acctttaaaa ttttgatagt caatggcctt aggtgcgtaa gttaaaatag ttgtttgcat
     1321 attatgatca ttagcgtaag aaagtaaagc atcataagct tccaccatac taaaattcat
     1381 tggaaaactt tctaaaattt gcaaaatttt aatggcttga ttatagtcat ttaaacgcaa
     1441 taaagataaa aattgcaaat aataagcctt aaaattctca tcatcacttt ttaaaattct
     1501 agaattagct atgtctttag aaattttaat cacctgagga tattgtttat tgtcaaaaag
     1561 aatagatgct ttttgaagac cataaaatat agaatcttca ttataatttt tatctatata
     1621 atcaagtgct tgttcaacat tagaagttct gataagacaa gctaacattt gttttttatt
     1681 ctcaattttc tgacctatat cataagcact aaaacgcata aaaatatttg cagcattgat
     1741 acaattatca gcttttatgg cattttttaa atcattaatg gctgctttct ctaaaaattg
     1801 agtagcattt ggaatttttt tactttctat aagatcttta taagctaaaa tggcactaaa
     1861 atttccctct ttataataaa gtgcaacatc ttcatctaaa gctttatttg caatattctc
     1921 atctttattt gcatattgct tcattaaatc tgtataacgc tgatgcaaaa agcttgcatt
     1981 attatcacct aaagcaaaga atacctcatc acttgctttt ttaatttcat ctaaatactt
     2041 accatctaaa taatcatcca tatacaaatc aaggtatttt ttagcatcac tagatctgtt
     2101 agcatgtgat aaaaccaagg ctaaatcttt taaagtttct tcataacttg gatcaagttt
     2161 ggacatttta gcaaaggcat cttcataaat acttgcactt atatcaaatt gtcctttttg
     2221 attaaataat ttagcaagtt ctaaagatct tggaatatct tttccaaaat attcaggatt
     2281 ggcttttaaa atggtattaa tatattctat agctttattt acttgctcat ttgaaagcaa
     2341 attctttgcc aaactcatag ctgctcttgc agctaaatct aaattttttg tattaaaata
     2401 agtattttca taaatattta cagctttttc tttttcattt aaattataaa tatagtctgc
     2461 ataatcaagt tttgataact gagtaaaata attattaggt tgttcattat ctaaaatcga
     2521 cattgtatac tctacatcag cacgctgagc taaagcgata taagttctta acattatatg
     2581 taaaacttct gaaaaatttt tatcacttgt aaaagtacgc gtccaatttt tagcatcatc
     2641 aatcatcttt tctaaaattt gttgatcacg catacttgga tcttgagtgt aaagtttatt
     2701 ttgagctctt aatttataaa gtataaattc actagtaaaa atactgccac gatatctatt
     2761 gatagcattt tgtgcatcaa tcaccacttg attgtaatta gccttatcgt attctttttt
     2821 gatgcgtaaa taagtattga tatctgcact ttgaggaata acaacaggat cagaatttaa
     2881 atccaaagct ccaacataag gcaaactctc atgtggaaaa ttgatattaa aatcgagtcc
     2941 atcatagtct ttaataggtg ctagttctgg tgtaaaaata aaagtaaaag ccttactttt
     3001 atgcgaactt gatgaactga gttctttatc tatataaata ttttgagaag tgtcaaacat
     3061 tcttgcttgt atttttggca aaatgatcat tttaattttt tgagcttctt gtataaattt
     3121 taaatcaaaa gcagaaaaac tctgatcttt taatttatta tcaaccatac ctacaatatc
     3181 acattcaaaa tgaacttttg cttcggtaat aaatttttga catgtaaatt ctaaatcatt
     3241 actcgcatgt aaaactgcaa aagcttgatt attttcgcga cccgtgttta aaacaagctc
     3301 aaaagcaaaa gcatttaaaa aacttaataa aattaaaaat aatattctca taaaataatt
     3361 atagcaaaac tcttataaca ttaacaatat aacaaaagtg cttacacaaa cacaaaaagc
     3421 taaaataaaa ttttgtataa aactaaactt aatattatga accctatcat ttttcataaa
     3481 taaagcatga attaaaatct ttaaatacgc ataaagcata ataacagaag ataaagccac
     3541 aaaaagcgcc aaataccaat atccatttaa aattgctgta tttaaaatca taaatttacc
     3601 ccaaaacact ccaaaaggcg ggatacctgc taaagaaagc acactaatgc ttaaacaaaa
     3661 agcaattaaa ggttttttaa ccaaaagccc atttaaactc tcataagaat tattctcata
     3721 attgcttaaa atcataaata cagcataatt tgcaaaagca aataaagtcc aatatccaaa
     3781 aatagcaagc aaaattccat caaaattttg ttcttttaat aaaggaatgc aagctaccaa
     3841 aaccaaagaa gaatgcacta cagaactata agcaaacatt tttttgatat tgttttgact
     3901 tagagccgca aaagcaccta taagcataga aaaaatcgct agaactatta tgatatattc
     3961 aaaacctgta ttatttaaaa aatcaaacaa acgaataacc acaaccaaca tggcaacttt
     4021 tggcacaact gaaataaaag caaccaaatt tgtatgtgct gcataataca catctttaag
     4081 ccaaaaatga aaaggtgcca aagaaagctt gattgcacaa agaacaaaaa tcatcactcc
     4141 agcacccaaa agcatgggat ctttttgaaa ctcatttttt aacgctaaat tagcagataa
     4201 atctaaagtt cctgttttta aataaataaa agctacagcc ataacaaaaa acccagctcc
     4261 tacagccgct acactaaagt attttatcgc acttgaaata gcattatcac ttccacgcat
     4321 tgctattaaa gtataaagtg ctaaagaaga actttcaagt cctataaaaa taagtactaa
     4381 atttgagctt gaaaccatca aaagcaaaga tgcaatcata aataaaaata aagcataaaa
     4441 ttcaccctga ttttcttctt tttgcattaa aagatataaa aatgaaaaac acaaaatcac
     4501 caaagaagca taaaatgaaa caatatcatt atttaaagta gccaaaaaag cttttgcttc
     4561 taaaccttga gcatttgcat tatttaaaat caaaaaagca cttacaatca aagacaaaga
     4621 acttatgccg atataaaacg atcgatgaaa tttccaaaaa ccagagcaaa gcaaaagaac
     4681 tattgcagtt gtaattaaaa ataaaaatgg ataagataag cttatattta aaagttctaa
     4741 atttaaaaaa ttatttaaca tttgcctctc ctattttaga taaaaaatct aaagtatttt
     4801 gctcaacagc tctaatattc attgttttta taagattatc cacatctttt tgtatcggct
     4861 ttaaaagtat atttggcata agccctagtc caaaaatcat tactacaatg cacacaagcg
     4921 ctactatttc tctaaaaagt aaagaaaaac cctctataaa gctttgtttt tgcatgaaaa
     4981 atatttttct aaatactgcg aacatataaa tcgctcctaa aataatcacc aaacctgcca
     5041 acaaagcgta aaataaatta atctttgcta tacctaaaag aattaaaaac tctcccacaa
     5101 aagaaacagt taaaggcaaa gaaacactcg caagtaaaat gagcataaag aaaattgaaa
     5161 ataaaggtgc ttttttggct aaagaatggt aaaaagaaat atcataagta tgatatcttt
     5221 ggtataaaag ttcaaccatt aaaaataaag ctcccgttac aataccatgt gcaaacatat
     5281 aaaaaaccgc accactaata cccaaagcat ttaaagaaaa aattcccaaa atcatcacac
     5341 caagatgtga aatagaacta taagcaatca attctttaat attttctgct ctataagcaa
     5401 ttaaagcgtt ataaacgata cttactatac ataaagctac aattaaaggc ataaaataca
     5461 cactcgcatc tggaaaaagt ggtaaacaaa aaagtaaaaa tccaaaagga gccattttaa
     5521 aaactacaag cattacagaa acaagtatag gcgaatttgc ataaacctta ggtgcccaag
     5581 tatgaagtgg aaataaagga gctttgatag caaaagcgat aaaaaatgct ccaaaaagta
     5641 aaagttgctc tgtaaaattt actgctgagg cattattttt ccaaatttcc aagtcaaaag
     5701 tgaagatatt taaaagctga taatttaaat aagcttgata aatcaatgct acaagcatta
     5761 aaattgaacc cgcaaaagca tagataaaaa atttcacccc tgctctaaaa tctttaccat
     5821 aaactcccat aatataaagc aaaggcaaaa gagaaaattc ccaaaaaaca taaaacaaca
     5881 aaccatcttt tgcgctaaaa agtcccataa tagcaaattc taaaaagaat atacaagata
     5941 taagcgcttt ttgttctagt ttcaaaaata aaaagcttaa aaatatcatc aaagaactta
     6001 aaagtatcaa tacaagtgca atactgtcta ctcctacatg aaagctaaaa aatttcaaaa
     6061 ttttaaaaga gagattataa tcaaagctta ccccttgtaa aaaatccgca aaaatatcca
     6121 aatttaaagc caaaatcata aaacttacaa caacgctaaa aaccttaacg cctccgcgat
     6181 ttaatagcaa aaccacaaaa gcagaaatta aaggaaaaaa tatcaaataa tttagcattt
     6241 tacaccatcc atactaaaat caacaaaatc acaaaagctg ccaccaaaaa cctaagcatt
     6301 aagtttaagc tgtttggcat aatcattttt tgtgaaatat tttgagaata caaagcaatt
     6361 ttttcaacta ttctatcaaa aatataaaga tcacaatgct ttaaaatcgc acataagctt
     6421 tcatattttg aaacgataaa ttgatgatag aattgaggaa taaaataatc attacttaaa
     6481 agtttatgaa ttttattttc ttcaatactt tccttaaacc aagaattttt ataagcaaaa
     6541 atagccaaaa ttgcacccaa aatagctgct acactcgcac aaatcattac aatttgattt
     6601 tgcgcatcaa taaaaactaa ttttgtgctt aaatattcaa aaaaactatg ttcgaaaaat
     6661 cctgcaataa tagctaaaac catcaaagga ctcatagcca aaagtgcgat tttacttgct
     6721 tcatgtggat gttcatcatg tcttgcaggg gtaaaaaata ccaacattaa aagtctaaag
     6781 ctataaaatg ctgttaaaaa agctgcgatt aagagcacta aaaaaatacc atggtgaaaa
     6841 gaaatgaaag aatatcccaa aatcaaatct ttagagaaaa atcctgcaaa aggataaatt
     6901 cctgctaaag ctaaagatcc tatacacatt aaaatagctg taatttttaa aggtttaaaa
     6961 agtccaccca tttttttaat gtctaattta tcattcatag catgcattac atttccagcg
     7021 cctaagaaaa gtaaagattt aaaaaaagca tgcgtagcta agtgaaataa agctatacca
     7081 taagccccaa gtcctgcagc cacaaacata tatccaagtt gcgataaggt agagtaagca
     7141 ataatgcgtt ttaaatccct aaccaccaaa gccatagagg ctgcaaaaat cgctacaaaa
     7201 gctccaagta aggcaataat ataagaaact tcaggaacta aatcataaag cgtactcgca
     7261 cgaattacca aataaacccc cgctgttacc atggttgctg catggattaa tgcagaaaca
     7321 ggagttggcc ctgccatagc atcagcaagc caagtgtgaa aaggaaattg tgcagatttt
     7381 cccatagccc ctataaataa acaagttgcg attaagatca aagcattgtg atctaggctt
     7441 tgtgccatgg aaaaaacttc atcatatttt aaagttcctg cttgcaaata aagccaaaaa
     7501 attcctaaaa gcatacccaa atccgcaata cgattcataa taaaagcttc attagccgca
     7561 aaagaataag tatcattttt ataccaaaaa cctatgagca accaagagca aagcccaacg
     7621 ccttcccaac ctacgaaaag tcctaagaaa ttatcactca taactaaaaa aagcatagaa
     7681 aagacaaaaa gccccaaata agcaaaaaat ttattaaaac cttcatcatg agccatataa
     7741 aaaatactat aaaaatgcac acaagtagct acaataccta caacactcat catagtaagc
     7801 gaaatagcat ctatatcaaa gccaaaattt actccagcaa accattcaaa caaactcaca
     7861 ttaaaagctt cattgcaaaa aagcaaatac aaagaacaaa aagcactcaa agctactaaa
     7921 agtgaacaaa ttatccctac aaattgtttt ttctcactca aagcaaaaca acttgcaaac
     7981 aaaaaagcta caaaaggact aaaaagagaa atcaaagcta aattttgcat actaagcctc
     8041 cacttctttt aagcttttta attccaaagt gccttttctt ctataccaaa gcacacacaa
     8101 agctacacca acagctactt cacaagctgc tacacccatg ataaaaagcg caaaaacctg
     8161 tccatttaaa tcattgtgca ttttagaagc tgctactaag gctaaattag cactatttaa
     8221 taaaatttca cttgagataa aaagcatgat gagattttgt ctttttaaaa tccctacaag
     8281 tcctatgaca aacattaaaa tagcgacgaa aaaatacttt tctatcattg tttttccttt
     8341 gttagctctt tatgagtaag cactatagca cagactaaag caatcaaaag caaaatagct
     8401 ataaactcaa aagctaaaag atattttgaa aaaatcgcta aagccagttg tttattaaaa
     8461 tcaaacaaag caggatcatt taaaggcaaa tccgtgctga tattttggta tttaaaacct
     8521 ataagcatgg ccaaaagtaa aatcgtactt aaaaccacca aagtaaaaaa acttttttta
     8581 gctttaagtt gttctttaaa ttctttagaa gcatcaaaaa acatcatcgc aaaactataa
     8641 agtccaagta cagctccact ataaacaata atttgtatca cgcctaaaaa ctctgcatca
     8701 agtaaaaaat aaaatcccga taaaaatacc attccacccg ctaaagcaga aagagaataa
     8761 agcatatttt tacttaaaac cgcaatgcca aaaaagccta aaaccactac actaaaaaat
     8821 acaaaagcca aattttctat catttatttt ctccttgctc ttgtgtattt tgattttcta
     8881 aggctctttc aatcatcaca tcataataat ttggcgtttt tttaacccac aaatttgcat
     8941 cctttctaag acttcctgct ccttcaaatt caacttgatt tttaagctta tcaataggag
     9001 ttaaaaaatc ttgcttatag ccaaaataag acctttgctc ggctgcattt tcatactctg
     9061 tgccatgcac tatagcaagt tcagggcaaa cctcagcgca aaaaccacaa taaatacaac
     9121 gccctaaatt aatactataa ttttctactt ttttacgccc attttcatct aaagaagttt
     9181 ccattctgat acaattacta atgcaaattt tttcgcaaag cccacaacct atacatcttt
     9241 cattttcgct ttctataaaa cgcatcaaac gatgaacagc acggtaacga ttgtcaagct
     9301 ttaccttttc aaaaggatat ttaatcgtag cgctattatt tctcttaagt aattctctca
     9361 tcatcacaaa aagccctaca aaaagctcta gtttaacgct tctacgcaaa gcttgtgaaa
     9421 ttttctccca agtgctaaca ggagtttttc ttttctcatc tactaaataa taatttttca
     9481 tatcaaactc ctataaaaga actgtcaaag cagtgattaa aaggtttaaa acagctaaag
     9541 ggattaagat caaatagcac attttcatca cttgatctgg acgcaattgc ggaaaagcag
     9601 ctcttgccca aaaataccaa aagaaaataa aacttgattt tactatcatc ataatccaac
     9661 caggaataat ccaaaagcta ttaaaacccc ctaaaaacaa aagagtgacc aaaatagctc
     9721 cagctatcat agaagtatat tcacctatga aaaatatacc ccatcttaaa cccgaatact
     9781 ccgttccata acccgctaca atttcagcat cattttccgt caaacaaagc ggagttctat
     9841 tagtctctat aaataaagca attataaaaa gcacaaaagc caaaggttgt ttaaaaataa
     9901 gccaagaaaa aaatccatcg ctttgataat tgttaatatc caccaaagaa aaagaaccta
     9961 caagcattat aatagcaatc aaagctaaag ctcctacgct ttcataggaa ataatcgata
    10021 caagccctct tgcagcccct aaaatcgacc atttattatt acttgcaagt ccacccaaaa
    10081 acaccgcata aaagcaaagt cctgaagtgc cgatgacaaa aagcaaagct acattgatat
    10141 ctgccactat aggctgaatc acccttccaa ataaagtaaa ttcaggtagc ataggaatag
    10201 ctgctaaaga aacaaaagca caaatagcag aaatcaaagg tgctatagca aaaataaatt
    10261 tttgcgaatt tgaagggatt atatcttctt tagtaaaaag ttttatcata tcagctacaa
    10321 gttgaataag cccaaaaggc cctaccatat caggccctat gcgtctttga aaataagcta
    10381 aaacctttct ttcagcataa gttgcaagac ctgctaaact cgcaaatatt gcaatgataa
    10441 taatacattt aatcaaagtc tctaaagcaa aaaaagcaaa atcactcatg gtttgctcct
    10501 aatttttcta aattcgccac aacaaatctt tcatcaaaaa agcttagcgt atcaagtttt
    10561 tcatcaaaat acggcaagaa agctccattt tttatatcct tatccacacg cacactaagg
    10621 cttaattctt tatcttttat tttaagtttt acaagatctt tatcttttaa atttttctct
    10681 ttagctaaat tttcacttac acctaaaaaa atcacctcat taatcgcact agcacgattt
    10741 gaaaatctac caaattgata gctaggatta gcactataaa gcaaaatttc atcttctttt
    10801 aggcttaaat tttcaaaatt tggagagatg aattcttttt tagcaacttg tttgaaacat
    10861 tctaaattaa gctcatatcc ccttttacaa tcgcctgcat tggtataaaa attgtctaaa
    10921 tgatcaaaat caatcggaga aaaaccttta tttataggga gtctcttagt ataatttata
    10981 gtatattcct catcaaaacc taaagcatta gccaaatcat ttaaaaaata tcccttaaat
    11041 tctaaagcag cattagttgg taccactctt ttatcataat ttagaaaagt tccttcttgc
    11101 tgatttaaac tcgcactagc taaatttgca tgctcttcat aagaaaaact aaaatcacct
    11161 ttttcattgt agcctaaagt cttgccttct tgtgtattgt tatccaaatc acaaatcata
    11221 gccacaccta aggtattagt atgcgtagga tttaaaaaga ctttaaaagg agtagtattt
    11281 tggatcaaag caagtaattt agcaagtttt ttcgcatttt tatgaaaata aaaatcactc
    11341 cctacaacaa gagtaaaatt tgctttttta agcaataaat cttctaattt atcttcatct
    11401 atgcctaaat ttttagcaaa aacagagcgt tgtacttcta tgattttttt tactttttta
    11461 ggtacgactt tttttacttc tttttgaatt tcattgcctt cttcatcttt ttctatgact
    11521 tgttctacaa cttcttcgtt gatactttct tctatttctt tattttcact aacaaaaaac
    11581 tctgctaaat gagttttaat accttcatct tggctaaatt tttgaagtaa aaaatataaa
    11641 atttgctctt catcgccatt tttatgaatg tgcgggataa aatttttaga atattttgct
    11701 atacccatat cttccatagg atgaaaataa agccctgagc ctttattcat cactaaagca
    11761 ttattgattt tatagctaag cgttggagca tcatatctta aaagcattcc agctacaacc
    11821 aaaaaatcac tttttgttat atcttgagta ttagcgctat aaaactcacc agaattagcg
    11881 ataaattctt gtaaaaattc tttaaatttc aaagcttctt cattgatcaa agaaagatta
    11941 aatttctttt ttaaattttg taaaatcaaa gcttcttcat tggtaataaa actattaaat
    12001 ttaatgtttt taatttcatt tttctcaaaa agctccacaa gttctttaaa ggctttttca
    12061 tctttatccg cctcattttg cgtatcaaaa gcaaaccttg cagccttatt taaactcgca
    12121 aaggcaaaat cattactcac acgataaatt ttttcttttt gattactaat gccgctttgc
    12181 ttaatatcat aatacatcaa ctcacaatcg cttgaatgcg gatttgaagc agggattctt
    12241 ttaagttccc aaatatttga agtgtattga aatttcgaac ctatcaaagc tcctgttgga
    12301 cacacgcttg tacattctcc acaaaatgaa caatcaagcg tatcaccatt tgcagggcct
    12361 atcaaacttt tttgaaattt agtccaaatc gcataagcat cttttcccat gctctcttta
    12421 aagctattat ccacactatc tccgccacga ggaacagtct ttaaagcact ttcgccgatt
    12481 ttatccttac aaactgtaat acaacgctca cacactatgc aaagtgcggg atcgtaatta
    12541 atcattcccc aatgtttatg tggtttatgc gtgtctttaa tccaatgttt ttgaacattt
    12601 acacgacttt tatgagtaaa attttgcaat tcacactcgc ctgatttatc gcaaactcca
    12661 cattctaaag gatgattgat acaataagct tgcatgatct catttctttc atcccaaaga
    12721 ttttgtaaat cactttctac aaccataccc tcttttgctt tagtattgca agaatatacc
    12781 tttttaccat cagcttcaac catacacata cgacaagcca aagtaggact acagcccgaa
    12841 agatagcaaa tcgctgggat aaaaatatca tttcttcttg ctatatttaa gatatattcg
    12901 ccttcttcaa aggcgcaatc tataccatta atcttaactg tcattttgct tcctttatgc
    12961 gaattggagt aaaatcaaaa ccattatttt cataatttaa aaaagctatg gtgccttgta
    13021 aattttcatc taaacaaagc ttagttttaa aactaaaatc tttagctaaa atttcaactt
    13081 cactttgatc tttgcatttt gcaatttgta aaaattgcct tgaacaatgt aaatttttat
    13141 cttgcaaatt tgctctaaaa agcactaacc cgtcataatt atcgagttct tttagggtgt
    13201 ttaattttgc ctttttaaaa tcgcattctt cttcatcgct atctaaaatc tttaatccat
    13261 attttacact taagaaattc aaaaaatatt tgatattttc actatcttta taagaatgga
    13321 tatttttatc tataattaaa tacttaacct cttttaaaaa agcaagcact tcgcctgctt
    13381 cttcctctcc aaaacaagat tcagcactta aatatccctc atctaaatcg caaaattgtc
    13441 cttcatcgct taatttacaa agcaaggcca aaacaaaact caaacttgca atttcgcatt
    13501 tgtaaaattt agcttttaag tttttatctt ccaaacaaga aatattaatg ctatttacac
    13561 ctattttttc acataaattt ttgtttttaa ggcttggcat atctaaaaaa caaagagcat
    13621 tatcataaat cataccctct ccttttttat aacaatagtc caatcgactt gattaaattt
    13681 caaagaattt aaaagctcac agccttgttc ttttacaaaa gaaaaacttt tttcaacagg
    13741 agaaaaatcg ccgatttcaa aaagcaccac taaaacctca ccttgttttg cttcttttat
    13801 gatttgtgct aaatcttcaa aaagctcttt gctttttctt aaatctaccc ttctcatcga
    13861 tctatctcac ctaaaactat atttacatta cccataatgg ctacaacatc agctaaataa
    13921 gtacctacaa gcatttcttc aaaaaacgca caatgccaat aactaggcgt tctagccttt
    13981 aaacgataag gtcttcctgt accatcacta tggataaaaa agccaagctc accttttgga
    14041 ctttcagtag gcacataaac ttcgccttta gggggtttta aaccttgagt gattaaaaca
    14101 aaatgctgca ttaaagaata attctgcgtt aaaatttgtt cctttgaagc acttacatac
    14161 tcaggatgcg tagctaaaat ttcaggcgaa gtatctttat aaagcatggc acattgtcta
    14221 aggattttca aactttcacg aaattcttgc atataaactt tatatcttgc ataagaatcc
    14281 ccttgcgtag cataaggcac accaaattca acttcattat aaagcaaata aggctcttct
    14341 ttgcgtatat cgtattttat gccacttcct cttaacatca cacccgtaca accccaattt
    14401 aaggcttgtt ctttagtaac cacacctaca ttttcagttc ttaaacgcca aattctatta
    14461 tcatctaaaa gatcttcata atcttttaaa tcatttggaa atttatcgca aaatgcaagc
    14521 atttcttcta aataattctc aggtaaatca agcataaccc cgcctattct catagaagaa
    14581 tgcgtaagcc ttgcaccgca atacttttct atcaaatcca aaacatactc tcgttctcta
    14641 aaacagtata aaaatacact catcgcacca atatcaagcg catgagtagc aagccaaagc
    14701 aaatgcgatg tgatacggtt taattctaaa agtatcatgc gtatcactgc ggcacggcgt
    14761 ggaatctcta aaccacaaag cttttcaacc gctgcacaat aagcataatt attcgctgaa
    14821 gcagcgatat agtccattct atcagtagta ggaataaatt cttgataaat catattttca
    14881 gccatttttt ccataccacg atgcatataa cctatacaag gacgcgcttt tacaacttgc
    14941 tctccatcaa gttctaaaat aagacgtaaa tttccatgtg ctgaagggtg ttgagggcct
    15001 aaattgataa tcatttttga gtcttcttgc tcaaaagcta tattttcata ataaggtttt
    15061 aacttgctag gaatttgcat tttaacgcct tttctctaaa atttttgctt catcacgttt
    15121 tacttttttt acaaaagcta cgccttcatc ttcttgatat tcttgtttaa aggaaacttc
    15181 cttcttttga ccaccttttg gcacttcatg ataaagtctt gcaaaattta gcgtatcttt
    15241 atcatcaaca aaaccagaat ctctttgttc ttcacccact acttcacgat attctttacc
    15301 aaaaatttta tcaatctcat accatcttgc aaactcatca ccctttaaag gataaatttt
    15361 taaaagcgga tgtccaaacc aatcatcagg cattaaaatg cgttttaaat taggatgatt
    15421 tatgatgaaa attccaaaca tatcataaat ttctctctca ctccaatttg cccctttaaa
    15481 aacatgagcc acgctttgca aacgctcttt tacgcctaca aaagttttta ttctcactct
    15541 taattttttt tctaaattta aaagctgata aaacacttca aaaccatttt tatctgctat
    15601 aaaatcaata gcacttgctt ctgtaaaact taaataacct aaagttttaa gcatttgcaa
    15661 ggttttaaca ttgtcttctt ttttaatttc tattacccaa aaatcaagct ctacaaagga
    15721 atttaaaatt tctacttgag tttttaaaac ttcaaaatcc tctttaaaaa cactttcatt
    15781 aacatcagat tttacagtgt gtggtgcgtg ataaaatcta tctttgtagt aattttgagt
    15841 ttgagcattt tttttatcgc tatactttct catcatatca accttttagg tgcgatcttg
    15901 cgacttgctt tttctttgcg aatctttttt tgcaaaatca tcaaagcaaa ctgaaaactt
    15961 tcggggcgtg gagcacagcc tggcacataa atatctacag gtataattct atccactcct
    16021 tgaacagtag aataagtatt aaacataccg cctgtattgg cacaacttcc catagaaatc
    16081 acccatttag gatcaggcat ttgatcataa agtcttcttg taaattcagc gtgcttttta
    16141 cacaaagttc ctgcgataat catcacttca ctgtggcgtg gtgaagctct aaaaatcgtt
    16201 ccaaatctat caaaatcata tcttgaaccc ccagccgcca tcatctcaat cgcacaacag
    16261 gcaagtccat aagataaagc ccataaagaa ttactcctgc cccattgaac tagcttatcc
    16321 acactggtta aaactacggg caaaccactt gcataattta cttgatgctc tgccatgcaa
    16381 acgctccttt tttataagca tataaaaatc caactcctaa aagtacgata aaaacaaaaa
    16441 cttctaaaaa tccaaaccaa cctaaatctt taaaaatcaa agcccaagga aataaaaaca
    16501 caacttctat atccaaaagt atgaagatta aggcgatgat gaaaaattga gagttaatct
    16561 tgttagcttg tttaacagga ataggaccac attcataaat tccaagtcct aattttttgc
    16621 gattttttgc ggcaaaatta ttaccgattt ttgaagctaa aaaaaccagt ccaaaaaaaa
    16681 taacactagc aagtaccagc attaaaaaaa taccaaaata aggatgcgaa gcatctatat
    16741 gagacattta ttctcctttt ttaaagcact ttaatcactc cacaacaaaa attaaattta
    16801 cact
//
LOCUS       DAZBIH010000028        16754 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.028, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000028 DAZBIH010000000
VERSION     DAZBIH010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16754)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16754)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16754
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.028"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..785
                     /locus_tag="ACHFOB_000747"
     CDS             <1..785
                     /locus_tag="ACHFOB_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN5799561.1"
                     /translation="TTLLKTNLYFLEEKTTSKSSNQTHIISLKQSDDEFLNLLFSFLV
                     PQSDEDKNFIGKTRTKIKRNEHNIALIKNPNFNALIDTGFLDTIDTLKEKLHIHKTDF
                     KDITHIILTHAHPDHIGALMSEENLFPKAQILIDKKEYDFWIKSDRQEIKNTLLKLKN
                     IEFINHSKDLIFQNSGIKAIPAYGHTPGQNAIIIDDKIVFWGDLLHLYDIQIPKPKIA
                     IKFDIDQNEAIQTREKLLKQFKERKLKVIGTHVPFIEPKFLD"
     gene            873..1091
                     /gene="infA"
                     /locus_tag="ACHFOB_000748"
     CDS             873..1091
                     /gene="infA"
                     /locus_tag="ACHFOB_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003743 - translation initiation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006413 - translational initiation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HFN5799562.1"
                     /translation="MAKDDVIEIDGTVLEALPNANFKVELDNKHVILCHIAGKMRMHY
                     IRIMPGDKVKVELTPYSLDKGRITFRYK"
     gene            1263..1376
                     /gene="rpmJ"
                     /locus_tag="ACHFOB_000749"
     CDS             1263..1376
                     /gene="rpmJ"
                     /locus_tag="ACHFOB_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HFN5799563.1"
                     /translation="MKVRPSVKKMCDKCKVVRRKGVVRIICENPKHKQRQG"
     gene            1379..1744
                     /gene="rpsM"
                     /locus_tag="ACHFOB_000750"
     CDS             1379..1744
                     /gene="rpsM"
                     /locus_tag="ACHFOB_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HFN5799564.1"
                     /translation="MARIAGVDLPKKKRIEYGLTYIYGIGLFTSRKILDKVGISYNKR
                     VHELSEDEAAAIRKEIQENYMVEGDLRKQVAMDIKALMDLGSFRGLRHRKGLPVRGQK
                     TKTNARTRKGKRKTVGAKS"
     gene            1754..2146
                     /gene="rpsK"
                     /locus_tag="ACHFOB_000751"
     CDS             1754..2146
                     /gene="rpsK"
                     /locus_tag="ACHFOB_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HFN5799565.1"
                     /translation="MAKRKIVKKKVVKKNIAKGIVYISATFNNTMVTVTDEMGNAIAW
                     SSAGGLGFKGSKKSTPYAAQQAVEDALNKAKEHGIKEVGIKVQGPGSGRETAVKSVGA
                     MEGIKVTFLKDITPLAHNGCRPPKRRRV"
     gene            2174..2800
                     /gene="rpsD"
                     /locus_tag="ACHFOB_000752"
     CDS             2174..2800
                     /gene="rpsD"
                     /locus_tag="ACHFOB_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HFN5799566.1"
                     /translation="MARYRGPVEKLERRFGVSLALKGERRLAGKSALDKRPYAPGQHG
                     ARKGKISEYGLQLREKQKAKFMYGVSEKQFRRLFAEAARREGNTGVLLIQLLEQRLDN
                     VVYRMGFATTRRFARQLVTHGHVLVNGKRVDIPSFRVEAGAKIEIIEKSKNNPQITRA
                     IELTAQTGIVAWVDVEKDKRFGIFTRKPEREEVVIPVEERFIVELYSK"
     gene            2813..3826
                     /locus_tag="ACHFOB_000753"
     CDS             2813..3826
                     /locus_tag="ACHFOB_000753"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HFN5799567.1"
                     /translation="MRNITTSAYTPTEFTIENISDTVAKISAWPFEIGYGITLAHPLR
                     RLLYTSTIGYAPTAIHIDGVAHEFDSMRGMLEDVALFIINLKKLRFKIKGESNKEIVE
                     FSFKGSKEIYGKDLNNDQVEVVNKDAYLATINEDAELKFTLIVEKGIGYVPSEEIKEL
                     INDPKFIALDAFFTPVREATYDIEKVLFEDNPDYEKVVLTVTTDGQITPNEAFQNALE
                     AMYKQLSVFDKITNVRSVIKNQATSNELENTKLLQNITDLNLSARSYNCLEKAGVVYI
                     GELALMSVSELAGLKNLGKKSLDEIKNIMESIGFPVGTSKLSDNKEILKNKIAELKAQ
                     NEG"
     gene            3830..4183
                     /gene="rplQ"
                     /locus_tag="ACHFOB_000754"
     CDS             3830..4183
                     /gene="rplQ"
                     /locus_tag="ACHFOB_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HFN5799568.1"
                     /translation="MRHKHGYRKLGRTSSHRAALLKNLTIALVNSGKIETTLPKAKEL
                     RGYVERLITRARLGDFNAHRAVFASLQDKNATNKLVTEIAPKFKDRNGGYTRIIKTRI
                     RRGDAAEMAFIEFVA"
     gene            4356..5255
                     /gene="hisG"
                     /locus_tag="ACHFOB_000755"
     CDS             4356..5255
                     /gene="hisG"
                     /locus_tag="ACHFOB_000755"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HFN5799569.1"
                     /translation="MQENTRLRIAIQKSGRLSKESIELLSECGVKMHIHEQSLIAFST
                     NLPIDILRVRDDDIPGLIFDGVVDLGIIGENVLEENELERQSLGENPSYKLLKKLDFG
                     YCRLSLALPQEKKFQNLKDFEGLRIATSYPQLLKRFMKENGINYKNCMLTGSVEVAPR
                     ANLADAICDLVSSGATLQANNLKEVKVIYESRACLIQKENALSKEKQTLVDKIMLRVA
                     GVMQARESKYIMLHAPKEKLDKIQALLPGVERPTILPLAHDEKNVALHMVSKENLFWE
                     TMEALKEEGASSILVLPIEKMLK"
     gene            5263..6549
                     /gene="hisD"
                     /locus_tag="ACHFOB_000756"
     CDS             5263..6549
                     /gene="hisD"
                     /locus_tag="ACHFOB_000756"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HFN5799570.1"
                     /translation="MQILVYDNLDEKQKEEALKRPAISAKDEISKIVSSIVKEVQEKG
                     DEALIEQALKFDKAEISNIKITQEEITQASNRLDKDLQDAILVAYENIKKFHEAQIPH
                     EIALETTKGVKCEVLTRPIEKVGLYIPGGLAPLFSTVLMLAIPAKIAGCEKIVLASPA
                     KINDAVLFCAKLCGVDEIYQMGGAGAIAALAYGTQSVLKVDKIFGPGNAFVTEAKRQV
                     SSDINGATIDMQAGPSEVLVIADDLANEKFVASDLLSQAEHGADSQVILVCLSQDFAQ
                     KASNEVQSQLELLPRKKLASKSIANSRIIIAKDLNQALEISNLYAPEHLIIQTQNPRE
                     LLKGVKHAGSVFLGAYSPESMGDYASGTNHVLPTYGLTKTHSSLGLADFSKRMTVQEL
                     SKEGFLALGKSVEILAQNEHLDAHKNAVTFRLESLK"
     gene            6546..7604
                     /gene="hisB"
                     /locus_tag="ACHFOB_000757"
     CDS             6546..7604
                     /gene="hisB"
                     /locus_tag="ACHFOB_000757"
                     /EC_number="3.1.3.15"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004401 - histidinol-phosphatase activity
                     [Evidence IEA];
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     histidinol-phosphatase/imidazoleglycerol-phosphate
                     dehydratase HisB"
                     /protein_id="HFN5799571.1"
                     /translation="MSQKILFIDRDGTLIEEPKSDFQIDTLEKLRFEKDAIPTLLKLK
                     NFGFKFVMVSNQDGLGTPSFPKENFEIAHEKMLDILKSCGIEFQDIFICPHFENENCA
                     CRKPKTAMLEEYIKHELYDKEQSFVIGDRESDMILASNLGVRGLRYGELSWKEIENEI
                     LSSFRSASYQRTTKETDIKVKVCLNGGKISIKTGIDFFDHMLEQIAVHGGIGLEISCK
                     GDLEIDEHHSVEDVALALGACIKKALGDKIGIARYGFALPMDECLASCAMDFCNRPHL
                     VYKAKFKKSHLGALSTEMIEHFFYSLSYAMGVSLHLKVKGKNDHHKAEGLFKAFAKAL
                     KMAVKIESENLASSKGVI"
     gene            7601..8188
                     /gene="hisH"
                     /locus_tag="ACHFOB_000758"
     CDS             7601..8188
                     /gene="hisH"
                     /locus_tag="ACHFOB_000758"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFN5799572.1"
                     /translation="MKIIIIDTACANLASLKFCLDRLGFNATISRDLKELESADKLFL
                     PGVGTAKEAMKNLEQFNLIDFIQNTKKPLLGICLGMQILGNFSEELNQETLKLIDFTT
                     QKFKAKEGFTFPHMGWNQVHSSHALFKGLEGAYFYFVHSYCAGLGEYTIADCEYSQKF
                     SASVMKDNFYGVQFHPERSSEAGENLISNFIKDIG"
     gene            8185..8916
                     /gene="hisA"
                     /locus_tag="ACHFOB_000759"
     CDS             8185..8916
                     /gene="hisA"
                     /locus_tag="ACHFOB_000759"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HFN5799573.1"
                     /translation="MTQIIPALDLIDGEVVRLVKGDYEQKKVYKYNPLEKFKEYEKAG
                     AKELHLVDLTGAKDPSKRQLALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVV
                     IGSMAIKNATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFY
                     SNKGLKHILCTDISKDGTMQGVNVRLYKLIHEIFPNICIQASGGVASLKDLENLKGIC
                     SGVIVGKALLDGVFSIEEGIRCLAN"
     gene            8901..9803
                     /locus_tag="ACHFOB_000760"
     CDS             8901..9803
                     /locus_tag="ACHFOB_000760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH domain-containing protein"
                     /protein_id="HFN5799574.1"
                     /translation="MSSKLSYKELTLEILKQSDRPLSVNEIWQKALEQGLDKKLSSIR
                     QTPIATLGTRIYVDIKELQHNSLFIKASQKPTTFWLKERENELLKLDNKNEITNEKQE
                     KNKFHERDLHPLLVKFLYENLDFNLNCKTIYHEQSKKGKGGEDKWNYPDIVGVYFPYD
                     DYEKETITLLENIKQNSYKLFSFELKIALNFSNLKECYFQALSNSSWANEGYLVVLQE
                     IDSEVLSELRRLNQSFGIGVIKLDIQTLNMLINKNPNFKEFIDDINKQIKVGKEAKIQ
                     ANFDEIKSDEEMEKYLKEKCILEK"
     gene            9804..10571
                     /gene="hisF"
                     /locus_tag="ACHFOB_000761"
     CDS             9804..10571
                     /gene="hisF"
                     /locus_tag="ACHFOB_000761"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HFN5799575.1"
                     /translation="MLTKRIIACLDVKDGRVVKGTQFKNHKDMGDIIELARYYSQNGI
                     DELVFYDIAASARKERISREWVSEVAKNINIPFCVAGGIKSEEDAAELLANGADKISI
                     NSPALNDPSLITRLAKSFGVQCVVVGIDSFKDENGNLKVFQYTGDEKTSKYSGKSTLE
                     WVKEVQDLGAGEIVLNMMNQDGVKNGYDLEQLEAVYKICKVPLIASGGAGKMEHFLEA
                     FKLGIDGALAASVFHQKLIDIKELKIYLKNQGLSIRI"
     gene            10573..11196
                     /gene="hisIE"
                     /locus_tag="ACHFOB_000762"
     CDS             10573..11196
                     /gene="hisIE"
                     /locus_tag="ACHFOB_000762"
                     /EC_number="3.5.4.19"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_function: GO:0004636 - phosphoribosyl-ATP diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphoribosyl-AMP
                     cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE"
                     /protein_id="HFN5799576.1"
                     /translation="MQNFKELNEKIAWQKVDHLLPVIIQDAKTCEVLMLGFMNNEALE
                     KSLESGKVVFFSRTKQRLWMKGEESGNFLNIVDLSLDCDNDTLLILANPVGPTCHTGD
                     ISCFEKISKNADFVFLARLEKLINARKNADENTSYTAKLFKSGTKRIAQKVGEEGVET
                     ALAATVKDKEELICEAADLMYHLSVLLADANLSFSDVISKLKERHKA"
     gene            complement(11220..12380)
                     /locus_tag="ACHFOB_000763"
     CDS             complement(11220..12380)
                     /locus_tag="ACHFOB_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrodipicolinate N-succinyltransferase
                     N-terminal domain-containing protein"
                     /protein_id="HFN5799577.1"
                     /translation="MINTKEDFLLLIKQIEQKSGYKKPKAFGIARLDRGQLNKNKILQ
                     ASFALINYEQNFGSAAIMLEAFMQRGVEIDFNASEFVQTLKLEDIDFALSCFKPFLEE
                     EGHQNIDLLKIIKDKFKDDEFAFVCLFEDKEPLSVESVYLKLYLLSTKKVPLRSINLN
                     GAFGLLSNVAWSDDKPIELEYLRANEMRLKMSNQYPKIDFVDKFPRFLSHIIPEDNTR
                     ILESSKVRMGASLAAGTTIMPGASYVNFNAGTTGACMVEGRISSSAIVGEGSDVGGGA
                     SILGVLSGTSGNAISVGKACLLGANSVTGIPLGDNCIVDAGIAVLEGTKFLLKDAEEL
                     AKLNPYFNFDKEIYKGLELKGLNGLHFRQDSISGAMIVALNKKAVKLNEALH"
     gene            complement(12406..13512)
                     /locus_tag="ACHFOB_000764"
     CDS             complement(12406..13512)
                     /locus_tag="ACHFOB_000764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HFN5799578.1"
                     /translation="MKEQILEKLKTVKYPGFEKDIVSFNFVKDIKIQDDGVFIDIEIV
                     SANPEVANEIRKNATEALSSLALKNIELNIITPKIPEEKSNSRSGKNIAPQVKNFIMV
                     SSGKGGVGKSTTTVNLAISMAKMGKRVGILDADIYGPNIPRMLGETKTQPEVVGQRLK
                     PILTHGVYMMSMGVLIEEGQGLMWRGAMIMKAIEQLLADVIWPELDVLFLDMPPGTGD
                     AQITSAQSIPITAGVCVSTPQTVSLDDSKRALDMFNKLHIPIAGVIENMSGFLCPDNG
                     KEYDIFGKGTAEDMAKAYKSEVLAQIPIEMIVREGGDEGKPVSFYHPESVSSRRYLMA
                     AEKIWSFIEKINNEGGADNSAIQPVMNGKSACSH"
     gene            13635..14750
                     /locus_tag="ACHFOB_000765"
     CDS             13635..14750
                     /locus_tag="ACHFOB_000765"
                     /EC_number="2.7.7.60"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008685 - 2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase activity [Evidence IEA];
                     GO_function: GO:0050518 - 2-C-methyl-D-erythritol
                     4-phosphate cytidylyltransferase activity [Evidence IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase/2-C-methyl-D-erythritol
                     2,4-cyclodiphosphate synthase"
                     /protein_id="HFN5799579.1"
                     /translation="MSEISLIMLAAGNSTRFNTKVKKQFLRLGNDPLWLYATKNLSSF
                     YPFKKIVVTSSNISYMKKFTKNYEFIEGGDTRAESLKKALELIDSEFVMVSDVARVLV
                     SKNLFDRLIENLDKADCITPALKVADTTLFDNEALQREKIKLIQTPQISKTKLLKKAL
                     DQNLEFTDDSTAIAAMGGKIWFVEGEENARKLTFKEDLKKLDLPTPSFEIFTGNGFDV
                     HEFGENRPLLLAGVQIHPTMGLKAHSDGDVLAHSLTDAILGAAGLGDIGELYPDTDMK
                     FKNANSMELLKQAYDKVREVGFELINIDICVMAQSPKLKDFKQAMQSNIAHTLDLDEF
                     RINVKATTTEKLGFIGRKEGMAVLSSVNLKYFDWTRL"
     gene            14747..15634
                     /locus_tag="ACHFOB_000766"
     CDS             14747..15634
                     /locus_tag="ACHFOB_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HFN5799580.1"
                     /translation="MKVLIIENEIYLAQSISIKLSDAGYSCEIINSFNEYNGEKYYDI
                     VLLSTNTNNFLKAVGQFKHSIIILLISYISTDTVSNPLKLGASDYIQKPFMIEELIRK
                     IKHYQDFRKLSILNKAYQSYIKSRLETIKIPEYNYKKLKLPLILKSNKQSSADAFVFN
                     YANECDITLSFIDLTSTNSVEKVMKLPTENNLLFLSNFQALKAAEKEKLLDFIQNKNV
                     ILHTNSNTDDLKINCINLNDNEKNIDSNEILTIDEYVKYVIINYQNIFPDTDLSKKLG
                     ISRKSLWEKRKKYEISKKK"
     gene            15612..>16754
                     /locus_tag="ACHFOB_000767"
     CDS             15612..>16754
                     /locus_tag="ACHFOB_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HFN5799581.1"
                     /translation="MKSARKNKNITIDQNEFGILSLIKEGLLGTCTHLMNEKEVNEII
                     KSGKFKGESFPYPLSFAPKNAEEALNDIKSGDRIDLMLDEKVVGHIDFKSQFKNNKNF
                     SDIFSPNTCSLEDMGTTCISGKIEIYNSQIEKIKENFQQIKNNLNAQKITAIVSSFDP
                     LHRAHERMFRWTIDKADLVVIFLVESFDVNGFEFELKEAYLKKFIQNYLPPDRIFIFP
                     LKNINIFHAHLNPGLESIIAKSLGCTKLVVGQNHTGLGMFYDDNQPKTILDDFSKDYG
                     IEVIVLPEFVFCDQCRMIVSTRSCPHGCHHHLHYNSQSLKDLLRAGIIPPAIFMRKEV
                     SSVILTSLFPNRLKNMQKIYNELFPTDGILEYKNDEEFYQKLLEIYQ"
BASE COUNT         6227 a         2458 c         2901 g         5168 t
ORIGIN      
        1 taaccactct tttaaaaacc aatctttatt ttttagaaga aaaaaccaca agcaaaagtt
       61 caaatcaaac ccatataatc tcacttaaac aatctgatga tgaattttta aatttattat
      121 tttctttttt agtgccacaa agcgatgaag ataagaattt tataggaaaa actcgcacaa
      181 aaatcaaaag aaatgagcat aatattgctc tgataaaaaa tccaaatttt aatgctttaa
      241 tagacacagg gtttttagat actattgata cattaaaaga aaaattacat atccacaaaa
      301 ccgattttaa agatatcact catattatct taacacacgc gcatcctgat catataggag
      361 ctttaatgag cgaagaaaat ctttttccaa aagctcaaat tttaatcgat aaaaaagaat
      421 atgatttttg gatcaaaagc gatagacaag aaattaaaaa caccttgctt aaacttaaaa
      481 atatagaatt tattaaccac tctaaagatt tgatctttca aaattcaggc attaaagcca
      541 tacctgctta tggacatacc ccaggtcaaa atgctatcat aattgatgat aaaatagtct
      601 tttggggaga tttacttcat ctttatgata tacaaatccc aaaacctaaa atcgctataa
      661 aatttgatat agatcaaaat gaggctatac aaacaaggga aaaactactt aaacaattta
      721 aagaaagaaa actcaaagtt atagggactc atgtgccttt tattgagcct aaatttttag
      781 attaattact taaaaattac taaaaattaa gtaaaaattt taataatttt tgctaaaatt
      841 atagcctttt tatttcatga aaggagaaaa ttttggcaaa agatgatgta atcgaaattg
      901 atggcaccgt acttgaagca ttgcctaatg caaatttcaa ggttgaactt gacaacaaac
      961 atgtaatttt atgtcatatt gcaggaaaaa tgcgtatgca ttatataaga ataatgccag
     1021 gtgataaagt aaaagtagaa cttacacctt atagccttga taaagggcgt ataactttta
     1081 gatataaata atctaagtta tttaaaagct aattttagat aaaattagag tttttgcgac
     1141 aaattacatc gaactatatg aagaagtatt tttaaaatcc accacttatt ttgaaaatag
     1201 ttggttattc ataaaacctg atgtagtcgt aaatcaagtg gaattcattc aaggagacgc
     1261 tcatgaaagt gagaccatcg gttaaaaaga tgtgcgacaa gtgcaaagta gttcgccgta
     1321 aaggcgtggt tcgcattatt tgcgaaaatc caaaacataa acaaagacaa ggataaacat
     1381 ggctcgtatt gcaggtgtgg atttaccaaa gaaaaaaaga attgagtatg gactaaccta
     1441 tatttatggt ataggacttt tcacttcaag aaaaattcta gataaagtag gaatttctta
     1501 taataaaaga gttcatgagt taagtgaaga tgaagcagca gctatccgta aagaaattca
     1561 agaaaactat atggttgaag gggacttgag aaaacaagtt gctatggata ttaaagcact
     1621 tatggattta ggaagcttta gaggcttaag acacagaaaa ggcttaccag ttcgcggaca
     1681 aaaaacaaag acaaacgcaa gaactagaaa aggtaagaga aaaactgttg gtgcaaaatc
     1741 ataaggataa atcatggcaa aaagaaaaat cgtaaagaaa aaagtagtta aaaaaaatat
     1801 agcaaaaggt attgtttata tcagtgcgac ttttaacaat actatggtta cagtgactga
     1861 tgaaatggga aatgctatcg cttggagtag tgcaggtggt ttaggattta aaggttctaa
     1921 aaaatcaact ccttatgcgg cacaacaagc agtagaagac gctttaaata aagcaaaaga
     1981 acacggaatt aaagaagtag gcattaaagt acaaggacca ggaagcggta gagaaactgc
     2041 tgttaagagt gtaggtgcta tggaaggaat caaagtaact ttcttaaaag atatcactcc
     2101 attagctcac aatggttgca gaccgcctaa gcgtcgtcgt gtctaagata taagaaaaat
     2161 ttaggagaat attatggcaa gatatagagg accagtagaa aaattagaaa gacgctttgg
     2221 tgttagctta gcattaaaag gagaaagaag actagctggc aaaagtgcac tagataaacg
     2281 cccttatgca ccaggacaac acggagcaag aaaaggtaaa attagtgagt atgggcttca
     2341 attaagagaa aaacaaaaag ctaaatttat gtatggagta agcgaaaagc aattccgtcg
     2401 tttatttgct gaagcagcaa gaagagaagg aaatacaggg gtattactta tccaactttt
     2461 agaacaaaga ttagacaatg tagtatatag aatgggtttt gctacaacac gtcgttttgc
     2521 aagacaactt gtaacacatg gacatgtttt agtaaatggt aaaagagtgg atattcctag
     2581 ctttagagta gaagcaggtg ctaaaatcga aattatcgaa aaaagcaaaa acaatccaca
     2641 aataacaaga gctatcgaac ttacagcaca aactggaatc gttgcttggg ttgatgttga
     2701 aaaagataag agatttggaa ttttcacaag aaaacctgag agagaagaag ttgtcattcc
     2761 ggttgaggaa agatttatcg ttgagcttta ctctaagtaa taggggctaa atatgagaaa
     2821 tattacaaca tctgcttata cgccaacaga atttacaata gaaaacatta gtgatactgt
     2881 ggctaaaatc agtgcttggc cttttgagat cggctatgga atcaccctag cccatccttt
     2941 acgccgtttg ctttacacta gcaccatagg atatgctcca actgcgatcc atattgatgg
     3001 cgtagctcat gaatttgata gcatgcgtgg tatgcttgaa gatgtagcac tttttatcat
     3061 taatctaaaa aaactacgct ttaaaattaa aggcgaatca aataaagaaa tagtagaatt
     3121 tagctttaaa ggctcaaaag aaatttacgg caaagatcta aataatgatc aagtagaagt
     3181 agtaaataaa gacgcctatc tagcaactat caacgaagat gctgaactca aattcacatt
     3241 gatcgttgaa aaaggtattg gctatgtacc aagcgaagaa attaaagagc ttataaatga
     3301 tcctaaattt atagctttag atgctttctt tacacctgta agagaagcaa cctatgatat
     3361 tgaaaaagtt ttatttgaag ataatcctga ttatgaaaaa gtggttttaa ccgtaacaac
     3421 tgatggacaa atcactccaa atgaagcttt tcaaaatgct ctagaagcta tgtataaaca
     3481 attatcagta tttgataaaa tcaccaatgt tagaagcgta attaaaaatc aagcaacaag
     3541 caatgaacta gaaaatacta aattattgca aaacattaca gatttaaatt taagtgctag
     3601 aagttataat tgtcttgaaa aagcaggagt ggtttacata ggcgagcttg ctttgatgag
     3661 tgtaagtgaa cttgcagggc ttaaaaattt aggtaaaaaa tctcttgatg aaattaaaaa
     3721 catcatggaa agcataggtt ttcctgtggg aacttctaag cttagcgata ataaagaaat
     3781 acttaaaaat aaaatcgcag aattaaaagc acaaaacgaa ggataaagaa tgagacataa
     3841 acatggatat agaaaacttg gcagaacttc atctcatcgt gctgccttat taaaaaattt
     3901 aactatagct ttagtaaata gcggaaaaat tgaaactact ctaccaaaag ctaaagaatt
     3961 aagaggttat gtagaaagat tgattactag agcaagactt ggagatttta acgctcatag
     4021 agcagttttt gcttcattac aagataaaaa cgctactaat aaattagtga ctgaaattgc
     4081 tccaaaattc aaagatcgca atggtggata tacaagaatc atcaaaacaa gaattcgccg
     4141 tggtgatgct gctgaaatgg ctttcatcga atttgtagct taatcaaatc ctagcttttg
     4201 ctaggattaa tacttcaatt aaatacccta aaaataaaaa gttttaaata attattttaa
     4261 ataaaattaa atttatttat ttttcaaaac ccttgctaaa aattcaacta cttatgctaa
     4321 tataagtttt taatttttaa tttcaaggat atgttatgca agaaaacact cgtttacgca
     4381 ttgcgataca aaaatcaggt agactttcaa aagaatccat agagcttctt tcagaatgtg
     4441 gtgttaaaat gcatatccat gaacaaagtt tgatcgcttt ttctacaaat ttacctatag
     4501 atattttacg cgttagagat gatgatatcc ctgggcttat ttttgatggt gttgtagatt
     4561 taggtattat aggggaaaat gttttagaag aaaatgaact tgaacgccag tctttaggag
     4621 aaaatccaag ttataagctt ttaaaaaagc tagattttgg atattgccgt ctttctcttg
     4681 ccttacctca agaaaaaaaa tttcaaaatt tgaaagattt tgaaggctta aggatagcta
     4741 cttcttatcc acaactttta aagcgtttta tgaaagaaaa tgggattaat tataaaaatt
     4801 gtatgcttac aggttctgtt gaagtagccc ctagggcaaa tttagccgat gcaatttgcg
     4861 atcttgtttc aagcggggca actttacaag caaataatct taaagaagtt aaagtcattt
     4921 atgaatctcg tgcttgttta attcaaaaag aaaatgcttt aagtaaagaa aaacaaactt
     4981 tagtggataa aattatgttg cgtgtagcag gagtaatgca agcaagagaa tctaaataca
     5041 ttatgcttca tgctccaaaa gaaaagcttg ataaaattca agccctactt ccaggagttg
     5101 aaagaccgac tatcttacct ttagcacacg atgaaaaaaa tgtagcttta catatggtaa
     5161 gtaaagaaaa tcttttttgg gaaactatgg aggctttaaa agaagaaggt gcgagttcga
     5221 ttttggttct gcctatagaa aaaatgttaa agtgagtaaa aaatgcaaat tttagtatat
     5281 gataatttag atgaaaaaca aaaagaagaa gcgttaaaac gccctgctat aagtgcgaaa
     5341 gatgaaattt caaaaatagt aagctccatc gttaaagaag tgcaagaaaa aggtgatgaa
     5401 gctttgatag aacaagcttt aaaatttgat aaggctgaaa tttctaatat taaaatcact
     5461 caagaagaaa tcactcaagc aagcaatcgt ttggataaag atttacaaga tgctatttta
     5521 gtagcttatg aaaatatcaa aaaatttcac gaagcccaaa tcccacatga aatcgctctt
     5581 gaaactacaa aaggcgttaa atgcgaggtt ttaacacgcc ctatagaaaa agtaggactt
     5641 tacataccag ggggtttagc acctttgttt tcaacggttt taatgttagc tatccctgca
     5701 aaaattgcag gttgtgaaaa aatcgtttta gcaagtcctg caaaaatcaa tgatgctgtg
     5761 cttttttgtg ctaagctttg cggcgtggat gaaatttatc aaatgggtgg tgcaggagcc
     5821 atagcggctt tggcttacgg tacgcaaagt gttttaaagg tggataaaat ttttggccca
     5881 ggaaatgcct ttgtaaccga agcaaaacgt caagtaagta gcgatataaa cggagcgact
     5941 attgatatgc aagcaggacc tagtgaagtt ttagtaatag ctgatgattt ggctaatgaa
     6001 aaatttgtag ctagtgattt gctttcacaa gctgaacatg gtgcagattc tcaagtgatt
     6061 ttagtgtgtt taagtcaaga ttttgctcaa aaagcaagta atgaagtcca aagtcaatta
     6121 gaacttttac ctcgtaaaaa acttgcaagc aaaagcattg ctaattcacg cattatcata
     6181 gctaaagatt taaatcaagc cttggaaatt tcaaatcttt atgcccctga acatttgatc
     6241 atacaaactc aaaatccacg agagctttta aaaggtgtaa aacacgcagg atcggtattt
     6301 ttaggagctt attctccgga gtctatgggt gattatgcaa gcgggacaaa tcatgtttta
     6361 cctacttatg gacttactaa aacgcattct agtttaggtt tggcagattt tagtaaaaga
     6421 atgaccgttc aagaattaag taaagaaggc tttttagctt tgggtaaaag tgttgaaatt
     6481 ttagcgcaaa atgagcattt agacgcacac aaaaatgcag taacttttcg tttagagagc
     6541 ttaaaatgag tcaaaaaatc ctttttatag atagagatgg cactttaata gaggagccaa
     6601 aaagcgattt tcaaatcgat actcttgaaa aattgcgttt tgaaaaagat gctattccta
     6661 ctcttttaaa actaaaaaat tttggattta aatttgtcat ggtaagcaat caagatggtc
     6721 ttggaacgcc aagttttcca aaggaaaatt ttgaaattgc tcatgaaaaa atgcttgata
     6781 ttttaaaaag ttgcggtata gaatttcaag acatttttat ttgtccgcat tttgaaaatg
     6841 aaaattgtgc ttgtagaaaa cctaaaaccg ctatgttaga agagtatatc aaacacgaac
     6901 tttatgataa ggagcaaagt tttgttatag gagatcgtga gagtgatatg atcttagctt
     6961 caaatttagg tgtgcgtggt ttaagatatg gcgaactttc ttggaaagaa atagaaaatg
     7021 aaattttaag ttcttttaga agtgcgagtt atcaaagaac tactaaagaa acagatataa
     7081 aagtaaaagt gtgcttaaat gggggtaaga ttagcattaa aacaggcatt gatttttttg
     7141 atcacatgtt agagcaaatc gctgtacatg gaggtatagg gcttgaaatt tcttgcaaag
     7201 gggatttaga aatcgatgag catcatagcg ttgaagatgt agccttagca cttggagctt
     7261 gtatcaaaaa agccttaggg gataaaatcg gcattgcaag atatggtttt gctttaccta
     7321 tggatgagtg tttggcaagt tgtgcgatgg atttttgcaa tcgtcctcat ttagtctata
     7381 aagccaaatt taaaaaatct catttaggag ctttaagcac agaaatgatc gaacactttt
     7441 tttattcttt aagttatgct atgggtgtga gtttgcattt aaaagttaaa ggcaaaaacg
     7501 atcatcataa agccgaaggg ctttttaaag cctttgctaa agctttgaaa atggcagtaa
     7561 aaatagaaag tgaaaattta gccagctcta aaggagtgat atgaaaatca tcatcatcga
     7621 tacagcctgt gcgaatttgg catctttgaa attttgtctg gatagattag gttttaatgc
     7681 aactatcagt agggatttaa aagaacttga aagtgcggat aaactttttt tacctggagt
     7741 gggtactgca aaagaagcga tgaaaaattt agaacaattt aatcttattg attttattca
     7801 aaataccaaa aaacctttgc ttggtatttg tttaggtatg caaattttag gaaatttttc
     7861 tgaagaatta aatcaagaaa ctttaaaact catagatttt acaactcaaa aatttaaagc
     7921 taaagaaggc tttacttttc cacatatggg atggaatcaa gttcatagct ctcatgcttt
     7981 gtttaaaggc ttagaagggg cttattttta ttttgtgcat agttattgtg caggacttgg
     8041 ggaatacact atagcagatt gtgagtattc gcaaaaattt agcgcaagtg taatgaaaga
     8101 taatttttac ggggtgcaat ttcaccctga aagaagcagt gaagcggggg aaaatttaat
     8161 ttcaaatttt attaaggata taggatgact caaatcatac ccgcactcga tcttatagat
     8221 ggcgaagtgg tgcgtcttgt aaaaggggat tacgaacaaa aaaaagtata taaatacaat
     8281 cccttggaaa aattcaaaga atacgaaaaa gcaggagcga aagaacttca tcttgtagat
     8341 cttacaggtg caaaagatcc tagcaaaaga caacttgctt tgatagaaaa attagctaaa
     8401 gaagtcagtg tcaatttaca agtaggtgga ggcatacgct ctaaagaaga agttaaagct
     8461 ttgcttgatt gtggagtaaa aagagtagtt ataggatcta tggcgattaa aaatgcgact
     8521 ttatgtcttg aaattttaaa agaatttggt agtgaagcta tagttttagc cttagatacg
     8581 attttaaaag aagattatgt tgtggctgta aatgcttggc aagaagcaag tgataaaaag
     8641 cttatggaag ttttagattt ttatagcaat aaaggcttaa aacacatact ttgcacagat
     8701 atttcaaaag atggcaccat gcaaggagta aatgtaagac tttacaaact tatccatgaa
     8761 atttttccta atatttgcat tcaggcaagt ggtggagtag cgagcttaaa agaccttgaa
     8821 aacttaaaag gaatttgtag tggggttatc gtaggaaaag ctttattaga cggagttttt
     8881 agcatagaag aagggataag atgtctagca aattaagcta caaagaactt actttagaaa
     8941 ttttaaaaca aagtgacaga cctttaagtg ttaatgaaat ttggcaaaaa gctcttgaac
     9001 aaggcttaga taaaaagctt tctagcatac gacaaactcc aattgctact ttagggacta
     9061 ggatatatgt tgatataaaa gaattgcaac acaattcttt atttatcaaa gcttctcaaa
     9121 aacctacaac tttttggcta aaagaaagag aaaatgaact tttaaagctt gataataaaa
     9181 atgaaattac taacgaaaaa caagaaaaaa ataaatttca tgaaagagat ttacacccct
     9241 tgcttgtaaa atttttatat gaaaatttag attttaattt aaattgcaaa acaatttatc
     9301 acgaacaaag caaaaagggt aaaggtgggg aagataagtg gaattatcct gatattgtag
     9361 gggtttattt tccttatgat gattatgaaa aagaaaccat aacactttta gaaaatatca
     9421 aacaaaacag ctataaactt ttttcttttg aacttaaaat tgctttaaat ttttcaaatt
     9481 taaaagaatg ctattttcaa gctctaagta attctagctg ggcaaatgag ggctatttgg
     9541 ttgttttaca agaaattgat agcgaggttt taagtgagtt aagacgctta aatcaaagtt
     9601 ttggcatagg agtgataaaa cttgatattc aaacactaaa tatgctgatt aataaaaatc
     9661 caaattttaa agaatttatt gatgatataa acaaacaaat taaagtgggc aaagaagcaa
     9721 aaattcaagc taattttgat gaaattaaaa gcgatgaaga aatggaaaaa tatcttaaag
     9781 aaaaatgtat tttggagaaa taaatgctta caaaacgcat aattgcatgt ttagatgtca
     9841 aagatggcag agtagtaaaa ggaacacaat ttaaaaacca taaagatatg ggagatatca
     9901 tagagcttgc taggtattat tctcaaaatg gtattgatga gcttgttttt tatgatattg
     9961 ctgcaagtgc tagaaaagaa cgcatatcaa gagaatgggt aagtgaagta gcaaaaaata
    10021 tcaatattcc tttttgtgtt gcagggggta ttaaaagcga agaagatgca gctgaacttt
    10081 tagctaatgg ggcagataaa atttctatca attctcctgc tttaaatgat ccaagcctaa
    10141 tcacacgcct tgctaaaagc tttggcgtgc aatgcgtagt agtagggatt gatagcttca
    10201 aagatgaaaa tggaaattta aaagtatttc aatacacagg cgatgaaaaa acaagcaagt
    10261 atagtggaaa aagcacttta gaatgggtta aagaagtgca agatctaggt gcaggcgaaa
    10321 ttgttttaaa tatgatgaat caagatggcg ttaaaaatgg ctatgattta gaacaattag
    10381 aagctgtata taaaatttgt aaagtacctt tgatcgcaag tgggggagcg ggaaaaatgg
    10441 agcatttttt agaagctttt aaactgggta tagatggggc tttagctgct tctgtttttc
    10501 atcaaaaact tatagacatt aaagaattaa aaatttatct taaaaatcaa ggtttaagta
    10561 taaggatata atatgcaaaa tttcaaagaa cttaatgaaa aaattgcttg gcaaaaagtg
    10621 gatcatcttt tacctgtcat catccaagat gcaaaaactt gtgaagtttt aatgctaggc
    10681 tttatgaata atgaagcctt agaaaaaagc ttagaaagtg gcaaagtagt ctttttttca
    10741 cgcacaaaac agcgtctttg gatgaagggt gaagaaagtg gaaatttctt aaatatcgta
    10801 gatttaagct tagattgtga taatgacacg cttttaattt tagcaaatcc tgtaggacct
    10861 acttgtcata cgggcgatat ttcttgtttt gaaaaaattt ctaaaaatgc ggattttgtt
    10921 tttctagcca gacttgaaaa gcttatcaat gcacgcaaaa atgccgatga aaatacttct
    10981 tatacagcaa aacttttcaa aagtggcaca aaacgcatcg cacaaaaagt tggtgaagaa
    11041 ggcgtagaaa cagctttagc agcgacagta aaagataaag aagagcttat ttgtgaagca
    11101 gcggatttaa tgtatcattt aagtgtttta cttgcagatg caaatcttag tttctcagat
    11161 gtgatttcaa agttgaaaga aaggcataaa gcttaaagct ttatgtaaat gaatttatat
    11221 caatgcaagg cttcgttaag tttgactgct tttttattta aagctactat catagcacca
    11281 cttatagaat cttgacggaa atgtagccca tttaaacctt taagctctaa gcctttgtaa
    11341 atttctttat caaaattaaa ataaggatta agtttagcaa gttcttcggc atctttgagt
    11401 aaaaatttcg ttccttctaa caccgcaata cctgcatcaa ctatacaatt atcccctaaa
    11461 ggaattcctg taactgaatt agctcctaaa agacaagcct tacctacact tatagcattg
    11521 ccacttgttc cacttaaaac acctaaaatc gaagctccac cacctacatc agaaccttct
    11581 cctactatag cacttgagct aatacgccct tcaaccatac aagctcctgt tgtgcctgca
    11641 ttaaaattca cataacttgc ccctggcatg atggttgttc ctgctgctaa agatgcaccc
    11701 attcttactt tggaactttc taaaattctt gtattatcct cagggataat atgcgataaa
    11761 aatcttggga atttatcaac aaaatcgatt tttggatatt gattgctcat ttttaaacgc
    11821 atttcatttg ctcttaaata ctcaagctcg ataggcttat catcactcca agctacattg
    11881 cttaaaagtc caaaagctcc atttagattg atacttctta aaggtacttt tttagtagaa
    11941 agcaaataaa gttttagata aacactttct acacttaaag gttctttatc ttcaaaaaga
    12001 caaacaaaag caaactcatc gtctttaaat ttatctttga taatctttaa taaatcaata
    12061 ttttgatgcc cttcttcttc taaaaaaggt ttaaaacaag aaagtgcaaa atcaatatct
    12121 tctaatttta aagtttgcac aaactcactc gcattaaaat caatctccac gcccctttgc
    12181 ataaaagctt caagcatgat tgctgctgag ccaaaatttt gctcgtaatt aatcaaagca
    12241 aaacttgctt gcaagatttt atttttattt agctgtcctc tatcaagcct tgctatacca
    12301 aaagctttag gttttttata accacttttt tgctcgattt gtttgattaa aagtaaaaaa
    12361 tcttctttag tattaatcat tttcttttcc ttatccactt aatttttaat gcgaacacgc
    12421 actttttcca ttcatcacag gttgtatagc agaattatcc gcaccacctt cattgttaat
    12481 cttttctata aaactccaaa ttttttcggc cgccattaaa taacgccttg aactcacact
    12541 ttcagggtga taaaaactca caggcttgcc ttcatctcca ccttctctta ctatcatttc
    12601 tataggaatt tgtgctaaaa cttcactttt ataggctttt gccatatctt cagctgttcc
    12661 tttaccaaaa atatcatact ctttaccatt atcaggacat aaaaatccac tcatattttc
    12721 aatcacaccc gctataggaa tatgaagttt attaaacata tctaaagctc ttttgctatc
    12781 gtctaaagat acggtttgag gcgtgcttac acaaactcct gcagtaatag gaatactttg
    12841 cgcagaagta atttgtgcat cgcctgttcc tggaggcata tctaaaaaca atacatcaag
    12901 ttcaggccaa atcacatcag ctaaaagttg ctcgattgct ttcataatca tagctccacg
    12961 ccacataaga ccttgaccct cttcgatcaa aacccccata ctcatcatat aaacaccatg
    13021 agttaaaata ggctttaatc tctgccctac tacttcaggc tgagttttgg tttctcctag
    13081 cattcttgga atatttggcc cataaatatc cgcgtctaaa atccctactc tttttcccat
    13141 tttagccatg gaaattgcta aatttactgt agttgtagat ttacccacac caccttttcc
    13201 acttgaaacc atgatgaaat tttttacttg tggagcgata ttttttccac ttcttgaatt
    13261 acttttttct tcaggaattt ttggagtgat gatattaagt tcgatatttt ttaaagccaa
    13321 actcgataaa gcttcagtag catttttacg aatttcatta gctacttcag gatttgctga
    13381 aacgatttct atatcaatga atacaccatc atcttgaatt ttaatatctt ttacaaagtt
    13441 aaaactcact atatcctttt caaaaccagg atattttaca gtttttaatt tctctaaaat
    13501 ttgttctttc atattttttc cttgtctttt aaaaaaatca attttactaa taaaatgata
    13561 aaatttagct ttttataagt gtataatatg gtaacattat aaaaaccaac aatattaaaa
    13621 agaggaataa aaaaatgagt gaaattagcc tcattatgtt agcagctgga aattctactc
    13681 gttttaacac aaaggtaaaa aaacaatttt tacgacttgg aaatgaccct ctttggcttt
    13741 atgcaacaaa aaatttaagc tctttttatc cttttaaaaa aatagttgtt acctctagta
    13801 atatttctta tatgaaaaaa tttactaaaa actatgaatt catagaaggt ggtgatacca
    13861 gagcagaatc cttaaaaaaa gccttagagc tcatagatag cgaatttgtt atggtaagtg
    13921 atgtagcaag ggtattggtg agtaaaaatt tgtttgatcg tttgattgaa aatttagata
    13981 aagcagattg tattacccct gctttaaaag ttgcagatac aacacttttt gacaatgaag
    14041 ccttgcaaag agaaaaaatc aaactcattc aaaccccgca aatttctaaa accaaattgc
    14101 ttaaaaaagc cttggatcaa aacctagaat ttacagatga tagcacagct atagctgcaa
    14161 tgggtggaaa aatttggttt gttgaaggtg aagaaaatgc aagaaaacta acctttaaag
    14221 aagatcttaa aaagcttgat ttgcctacac ctagctttga aatttttact ggcaatggtt
    14281 ttgatgtgca tgaatttgga gagaatcgcc ctttgctttt agcaggagtg caaattcatc
    14341 ctactatggg gcttaaagca cacagcgatg gagatgtttt agctcactct ttaactgatg
    14401 cgattttagg tgctgcagga cttggagata taggagagct ttatcctgat actgatatga
    14461 aatttaaaaa tgccaactcc atggagcttt taaaacaggc ttatgataaa gtcagagaag
    14521 taggttttga actcattaat atagacattt gcgtcatggc acaaagccct aaacttaaag
    14581 actttaaaca agctatgcaa agcaatatag ctcatacttt agatttagat gaatttagaa
    14641 tcaatgttaa agccacaaca acggaaaaat tgggttttat tggaagaaaa gaaggtatgg
    14701 cagtgcttag tagtgtaaat ttaaaatatt ttgattggac aagattatga aagttttaat
    14761 tattgaaaat gaaatttatc tagcgcaaag cattagcatt aaactaagtg atgctggata
    14821 tagctgtgaa attatcaact cgtttaatga atacaatggt gaaaaatact atgatattgt
    14881 actgctttct acaaatacta ataatttttt aaaggccgta ggtcagttta aacatagtat
    14941 tattattttg cttatttctt atataagtac agatacagtc tcaaatcctt tgaaattagg
    15001 tgctagtgat tatattcaaa aaccctttat gatagaagag ctgattagaa aaataaagca
    15061 ttatcaggat tttagaaaac tttcaatcct taataaagct tatcaaagct atatcaaatc
    15121 aagattagaa acaataaaaa ttccagagta taattataaa aaattaaaac ttccattgat
    15181 attaaaatcc aacaagcaaa gcagtgctga tgcttttgtt tttaattatg caaatgaatg
    15241 tgacattact ctttctttta ttgatttaac atctacaaat tcagttgaaa aagttatgaa
    15301 acttcccaca gaaaacaatc tcttattttt gagtaatttt caagcattaa aagcagcaga
    15361 aaaggaaaaa ctcctagatt ttatacaaaa caaaaatgtt attttgcata ccaattcaaa
    15421 tacagatgat ttaaaaataa actgcattaa tttaaatgat aatgaaaaaa atatcgatag
    15481 caatgaaatt ttaaccatag atgagtatgt aaaatatgtt attataaatt accaaaatat
    15541 atttcctgat actgatcttt caaaaaaatt aggcatttca cgtaaatctt tatgggaaaa
    15601 aaggaagaaa tatgaaatca gcaagaaaaa ataaaaacat taccatagat caaaatgaat
    15661 ttggcatctt atcacttatt aaagaaggtt tgctaggcac ttgcactcat ttaatgaatg
    15721 aaaaagaagt caatgaaatc attaaatcag gaaaatttaa aggagaaagc tttccctatc
    15781 ccttaagctt tgcaccaaaa aatgccgaag aagcactaaa tgatataaaa tctggcgata
    15841 gaatcgatct catgctagat gaaaaagtag taggacatat agattttaaa agccaattta
    15901 aaaataataa aaatttttct gatattttca gtcctaacac ttgctcttta gaagacatgg
    15961 gaacaacttg cataagtgga aaaatagaaa tttataattc tcaaattgaa aaaataaaag
    16021 aaaattttca acaaatcaaa aacaatctta atgcacaaaa aattactgct atagtttcaa
    16081 gttttgatcc tttgcatcgt gcccatgaaa gaatgtttcg ttggactatt gataaagcag
    16141 atttagttgt aatttttctt gtagaatctt ttgatgtaaa tgggtttgaa ttcgaactta
    16201 aagaagcata tttgaaaaaa tttattcaaa actatcttcc accggataga attttcattt
    16261 ttccattaaa aaatattaat atttttcacg ctcatttaaa tcctggctta gaaagcatta
    16321 tcgcaaaaag tttaggttgt accaaactag tagtaggaca aaatcataca ggacttggaa
    16381 tgttttatga tgataatcaa ccaaaaacca tacttgatga tttttccaag gattatggca
    16441 tagaagtgat tgttttgcct gaatttgtat tttgcgatca atgtcgcatg attgttagca
    16501 caagatcttg ccctcatggt tgtcatcacc atttgcacta taattctcag tctttaaaag
    16561 atttactaag agcgggtatc attcctccag caattttcat gcgcaaggaa gtatctagtg
    16621 ttatcttaac ttctcttttt ccaaatagat taaaaaatat gcaaaaaatt tataatgagc
    16681 tttttccaac tgatggaatt ttagaataca aaaatgatga agaattttat caaaaacttt
    16741 tagaaattta tcaa
//
LOCUS       DAZBIH010000029        16597 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.029, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000029 DAZBIH010000000
VERSION     DAZBIH010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16597
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.029"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            18..1244
                     /locus_tag="ACHFOB_000768"
     CDS             18..1244
                     /locus_tag="ACHFOB_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ankyrin repeat domain-containing protein"
                     /protein_id="HFN5799582.1"
                     /translation="MKLLFTSFCCFASLMASDAINCDNIKNNKTLLNESSNLDYLNCK
                     ESLKNQDFTKKLYAISNEIRGGNSSCNGIAYLPKLQQFNLLLLKIAIDPITYQKTLDT
                     PENLEKKYDILKSYFRYWAYQSIGNFRLYKAFWQEYNNAIEPLEKYFESNFNFDKGSN
                     IYYTSNALNEFLNWAVGETKIYKDISPLAKIMSNKNYSVSYIQDFIFSNNPSQDDLTI
                     ALQAALLNQREKEILELLIRFGTRIDEGYESAIFYALENYENTNFLIQNGANVNQANA
                     FGKTPLFYAIEFNRLDIIKLLLDNGANVNQKYINNNEKLALSANIGSNTPYFITFCAL
                     EHTSKNVLMHAAAYGNVEILKLLISKGANFNAVDDLGFNALDFALSAGKKENADYLKS
                     LGLKANENLFYGGSLE"
     gene            1241..1990
                     /locus_tag="ACHFOB_000769"
     CDS             1241..1990
                     /locus_tag="ACHFOB_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HFN5799583.1"
                     /translation="MKTAFITGASSGFGRACVEAFIQEGYKVIALARRKERLEELKNA
                     HKDKIYTLCIDVRNQKEIFEAIENLPKEFQEIDVLFNNAGLALGVDEFDKLNLEDINT
                     MIDTNIKGFLYVAKAVIPILRKQKNAYIFNLGSVAGRNPYFGGNVYCGTKAFVGQFSL
                     ALRNDLRGSNIKVTNIAPGLCKTEFSQVRFKGDIQKADAVYENTQFISANDIAKVVMS
                     IINLPSHINVNEIELMPVTQTWNGFYIERDE"
     gene            1987..3720
                     /locus_tag="ACHFOB_000770"
     CDS             1987..3720
                     /locus_tag="ACHFOB_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaC family protein"
                     /protein_id="HFN5799584.1"
                     /translation="MNKFLVSLFLPLVAFANSSEAAANANLFGAFTLIPPLVAIALAF
                     ITKDVILSLFAGVLSGTFLLSLSANIFKAQHLAFVNFYNTAVESFSKIISYILGSTSD
                     PVNAGIILQILCIGGLVALITKMGGAKAVALKFAKRAKSAVSAQVNTWFLGLLIFFDD
                     YANLLIVGPIMRPLADKFKISREKFAFIIDSTAAPVAGIAVISTWIGLEVSLIKTAYE
                     HIGISDISAFGIFVETIPYRFYNIFMLFFVVMTAIMGREFGSMYKAEVRARTTGQIAP
                     LPKSGTLDTAELEDQFLAPKEGIKIRAFDAIVPIFTLIILAILGFYFNGLSTLEGEEL
                     AKASANPLSFETFRAAFGNADSSVVLFQAALFAAIVAIFIGVRRKIFNLKEAVETWIY
                     GWKTMIFTIVLLLFAWSLSSIVKDLGTSLFITSLLADKLPEFILPATIFAFASAISFA
                     IGTSYGTMGILMPLAVPLAHEIAKINGMDANAMHHYMVINISCVLTGAIFGNHCSPIS
                     DNVILSSMSAKCDHMEHVRTQIPYALFICGISLIAGYIPVSLGISVWFVLPLNFILIA
                     LLLRLIGKKVP"
     gene            3717..4790
                     /gene="trmA"
                     /locus_tag="ACHFOB_000771"
     CDS             3717..4790
                     /gene="trmA"
                     /locus_tag="ACHFOB_000771"
                     /EC_number="2.1.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030697 - tRNA
                     (uracil(54)-C5)-methyltransferase activity, S-adenosyl
                     methionine-dependent [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uridine(54)-C5)-methyltransferase TrmA"
                     /protein_id="HFN5799585.1"
                     /translation="MSLENFGNFLTLDEKHSFIKKYFKEFYTKDFKLFTSKDKHYRTR
                     AELSFYHENDTLFYAMFDPKSKKKYIIEYLDFADEKICAFMPKLLEYLRQDDKLKEKL
                     FGVEFLTTKQELSVTLLYHKNIEDIKSNLENLSNNLHINLIARSKGKKLIFKTENLRQ
                     TLNIQDRKIFYEFNNDCFIQPNTAINEKMITWVCEILNTQKRMDLLELYCGYGNFTLA
                     LAPFFFKVLATEISKSNINFALKNCELNNTTNIHFARLSSEELSLAIKKEREFFRLKD
                     IRLDDFNFSHVLVDPPRAGLDKSVIDLIKKYENIIYISCNPITLKENLKELSLTHRVE
                     EFALFDQFVNTPHLECGVFLSKV"
     gene            complement(5007..5192)
                     /locus_tag="ACHFOB_000772"
     CDS             complement(5007..5192)
                     /locus_tag="ACHFOB_000772"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799586.1"
                     /translation="MEEFYPYTLTIHLLCAILFIGYLFVDVFVLGVVKKKNPNFDKSL
                     FSATGVKIMPFVVLLLF"
     gene            5311..5724
                     /locus_tag="ACHFOB_000773"
     CDS             5311..5724
                     /locus_tag="ACHFOB_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HFN5799587.1"
                     /translation="MNEKETISYIINTSKNIAIFALSPDKTKASYRVAEFLQRKNYKI
                     FPIYPKEEFILNEKVYRNLDQIEEKIDTLILFRKGKVALEILPKLVEKNIKNLWLQLG
                     ISNETAKKECKKLDINFIQNRCIMLEYPYFKTKEK"
     gene            5724..6935
                     /gene="ilvA"
                     /locus_tag="ACHFOB_000774"
     CDS             5724..6935
                     /gene="ilvA"
                     /locus_tag="ACHFOB_000774"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - threonine deaminase activity
                     [Evidence IEA];
                     GO_process: GO:0006567 - threonine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HFN5799588.1"
                     /translation="MLELNKIYKAKQQISGFVNKTPFIYSSFLSDICQSEIYLKNENL
                     QITGAYKIRGAYNKIANLSTEQKQHGVIAASAGNHAQGVAISAKKFGIKAVIVMPEST
                     PLLKVSATKALGAEVILKGDNFDEAYAFATSYAKENNLSFIHPFEDEFVMAGQGTLML
                     EMLDEISDLDMIIAPVGGGGLISGIASAAKQINPNIKIIGVGAKGAPAMYESFHAKKI
                     KNAKSVRTIADGIAVRDANPINFNIILECVDDFIQVDDEEIANAVLFLLEKHKIIVEG
                     AGAASVATLLHQKINTQNHKKIGVVLSGGNIDAQMLNIIIEKGLFKSYRKMQIHVTLV
                     DKPGALLHLTDSLKIANANIVKIDYDRFSTKLDYGDAMISITLETKGKEHQEEIRKIL
                     TQKAFNFYESF"
     gene            complement(6932..7657)
                     /gene="truA"
                     /locus_tag="ACHFOB_000775"
     CDS             complement(6932..7657)
                     /gene="truA"
                     /locus_tag="ACHFOB_000775"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HFN5799589.1"
                     /translation="MMKIKIIFSYDGSAFLGSASQPHKKGVQDALSGALSHLGIVSPL
                     LMASRTDKGVHASYAVASVGCGDHFVNLEYLQKQLNKFSHPFIHIKKIEKVKDDFEVR
                     FDVKSREYRYIFSHSSYSPFMASYVHFYPKFDLDKANELLGFFVGKKDLKFFCKSGGD
                     NKTTLREIFIARAYAYKDFSIFHFKANGFLRGQIRLSVASVLKVLEGKMSEKELKEQI
                     EAKKQYNHFLAPPNGLYLSRICY"
     gene            complement(7654..8679)
                     /locus_tag="ACHFOB_000776"
     CDS             complement(7654..8679)
                     /locus_tag="ACHFOB_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HFN5799590.1"
                     /translation="MKLSLRYVLNQFLSTNLSIFFVLFAIVSMVFFIQLAKLTSSIEI
                     SFLDLLKLYGFMLPRILIFTLPISFFISLTLALFRLSKENESIVLFTLGFSPMILAKF
                     FLKIASLISAFMLVVALVMIPIVFELQDNFVNYKSTQVKFNYKTGEFGQKFLDWMIFI
                     EKQDSDKYENIIMYRPKHKADDKEQLIIAKEAHVQRKDDSFAFSLNQGKMYNFEQGQS
                     IFSGEFDTLVVNTQFNTDNLQTKKFYEYWNDLNENPQRAREFVIYTTIALFPLASTLF
                     ALCFGLVTYRYEKGYVYLGMFGVIAIYFGLLSSFSQPPILACLGIFSLSLFVSAYCFK
                     KMILSRY"
     gene            complement(8679..9455)
                     /locus_tag="ACHFOB_000777"
     CDS             complement(8679..9455)
                     /locus_tag="ACHFOB_000777"
                     /EC_number="3.4.23.43"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HFN5799591.1"
                     /translation="MIFFIIILGACLGSFCTSLASRIIEKKPFFISRSFCFSCDTKLK
                     YYEIIPIFSYIFLKAKCQTCKCHLPISLLINEILGIILLILAYSLSQNFYDFLFLSLF
                     LFNLFLLSLIDIKLKAVPQILLWSAFLFAFFYAFRESEILHFLIFKEFSGGFLLNAFS
                     FGGFVFLLKSLVFFLMNFRKKDEILENLGDADIIIMSCIGGILGFEYGFLVLLIASIL
                     TLPFFIFFKIKAIKEQELAMIPFLNIAFVAVLFYKNLGLF"
     gene            complement(9452..10120)
                     /gene="uppS"
                     /locus_tag="ACHFOB_000778"
     CDS             complement(9452..10120)
                     /gene="uppS"
                     /locus_tag="ACHFOB_000778"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HFN5799592.1"
                     /translation="MNELKHLAVVMDGNRRWARAKGFLAKLGYSQGVKTMQKLMEVCM
                     EENISNLSLFAFSTENWKRPKDEIDFIFELLDRCLDEALEKFEKNNVRLRAIGDLSRL
                     EDKVREKITLVEEKTKHCDALCVNLAISYGARDEIIRAAKRVIEKKLELNEENLTQNL
                     DLPLDVDLMLRVGNAKRLSNFLLWQCSYAEIYFSETLFPSLTKREFKRIIKEFRNRER
                     TFGK"
     gene            complement(10124..10741)
                     /locus_tag="ACHFOB_000779"
     CDS             complement(10124..10741)
                     /locus_tag="ACHFOB_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799593.1"
                     /translation="MSMINSTLPIQMKVLAKSGYGHYTLLLNHKKIQTKSMIELEIGA
                     EYLAELYMQNGGVIQFKHLSKRPNFKPFEEGLALIIAILQDKISYKKFIIQNLLDCKD
                     IERYQILKEMLFASFENIYHIPFIFENKSCLFQMRKRAKYLEIYLYFSVFGALKILID
                     SQGISVFTPFAKVQKFLNEHLDFNVSQENKIEPLFVFKRLFDFKG"
     gene            complement(10738..11892)
                     /gene="coaBC"
                     /locus_tag="ACHFOB_000780"
     CDS             complement(10738..11892)
                     /gene="coaBC"
                     /locus_tag="ACHFOB_000780"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015941 - pantothenate catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HFN5799594.1"
                     /translation="MKTILLAISGSIAFYKSYELISLFKKEDFRVKVLLSNGLLKFAS
                     KMSFEALVDEVLCEENESWQNSNNHIAFSKDVDLVLFAPASVNSINKLAFGIADNLFI
                     QTLIAANKPLIIAPAANTNMFHHFSTQNSLKILKENKALIIEPICKVLACKDEGVGAL
                     AEVKDIFNITKRELLKEKFWCDKSVVITGGSTRERIDDVRCVSNFSSGKMAKAIADAF
                     YFLGARVKLLSSVEFDTPYELCKFESSKDLKELLDKNLNHDFLIMTAAVSDFIPQSVK
                     GKIKKNEHLQGLNLHLSLNEDLLKTCKFQGKKIGFKMEFDSQNALENAKKSLKDKQLD
                     MVCLNIIDQKNYFGSDQNELYFITLNNENKSTLQSKEKLAFELVKWCEKL"
     gene            complement(11889..13178)
                     /gene="glmU"
                     /locus_tag="ACHFOB_000781"
     CDS             complement(11889..13178)
                     /gene="glmU"
                     /locus_tag="ACHFOB_000781"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003977 - UDP-N-acetylglucosamine
                     diphosphorylase activity [Evidence IEA];
                     GO_function: GO:0019134 - glucosamine-1-phosphate
                     N-acetyltransferase activity [Evidence IEA];
                     GO_process: GO:0006048 - UDP-N-acetylglucosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HFN5799595.1"
                     /translation="MKTSILILAAGLGTRIKSQKPKVLQELCQKSMILHILKKAFALS
                     DDVSVVLSHQKERVEKEILEYFPKTQILEQDLQNYPGTAGALSGFEPKNERVLILCGD
                     MPLVEQTSLEALLSNNAKLNLAVFKARDPKSYGRVVIKNDSVEKIVEFKDANTQEKEI
                     NTCNAGVYVIDSRLLKELLPLIDNNNAAKEYYLTDIVKLAKEKDVMIKAVFVDEDEFM
                     GINDKFELSIAENFMQEKIKKYWMQQGVIFHLPQSTFIGADVEFVGECEVYENVRIEG
                     KSKIINSIIKSSSVIENSIVENSDVGPLAHLRPNCELKNTHIGNFVECKNAKLNTVKA
                     GHLSYLGDCEIDSGTNIGCGTITCNYDGVKKHKTIIGKNVFVGSDTQFIAPVKIEDEV
                     IIAAGSTVSVNVEKGALFINRAEHKMIKDYYYKKFQK"
     gene            13321..14055
                     /gene="fliP"
                     /locus_tag="ACHFOB_000782"
     CDS             13321..14055
                     /gene="fliP"
                     /locus_tag="ACHFOB_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344227.1"
                     /note="The bacterial flagellar biogenesis protein FliP
                     forms a type III secretion system (T3SS)-type pore
                     required for flagellar assembly; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system pore protein
                     FliP"
                     /protein_id="HFN5799596.1"
                     /translation="MKKILLFLLLSMSLFAAEATIPTVNLSLSAPNTPNQLVTTLNIV
                     IVLTILALAPSIVFVMTSFLRLIVVFSFLRQAMGTQSMPPNTILVTLALILTFFIMEP
                     VATKSYNEGIKPYLAEKIGYEEAFIKGAKPFKDFMLKNTREKDLALFYRIRNLPNPKT
                     IDDVPLTVLVPAFMISELKTAFEIGFLIYLPFLVIDMVVSSVLMAMGMMMLPPTMISL
                     PFKLLIFVLVDGWNLLVQRLVESFVT"
     gene            complement(14052..14276)
                     /locus_tag="ACHFOB_000783"
     CDS             complement(14052..14276)
                     /locus_tag="ACHFOB_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799597.1"
                     /translation="MLEFIFTLILDFTFYSIKTLEKVFLGRTALVILFVVFIALFCVK
                     GLFLYILLALELFLLLYLFLGILFLRFYKS"
     gene            complement(14302..14529)
                     /locus_tag="ACHFOB_000784"
     CDS             complement(14302..14529)
                     /locus_tag="ACHFOB_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein"
                     /protein_id="HFN5799598.1"
                     /translation="MKKVAFFLLFLFLSCTVLNAAREYCKYAYQEDRAIPLILNYGIR
                     LGVVGAGVANAPAPGGSTYNSKIDMMAARCH"
     gene            complement(14622..15392)
                     /locus_tag="ACHFOB_000785"
     CDS             complement(14622..15392)
                     /locus_tag="ACHFOB_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transporter substrate-binding domain-containing
                     protein"
                     /protein_id="HFN5799599.1"
                     /translation="MKKIILIFISFFALNLSAKDLVVGMELGYPPFEMSDKTGKASGI
                     SVDFLEAFAKKNGYKLVVKNIAWDGLIPALKTAKIDLIMSSMTITDKRKKVVDFSIPY
                     AKANLAILTPLNSDITNIKDLDKKGKVLALKRGSTGHLYAVKNLKNATINLFDKENAA
                     ILEVIQGKADGFFYDQLTIYRTWQKHQDTTRAILAPFQENPEFWGIAVRKGDEALKDK
                     LDNFIDESRKNGFLDFLGNKYLKDIKEVFKQNNITFFL"
     gene            complement(15487..16597)
                     /locus_tag="ACHFOB_000786"
                     /pseudo
     CDS             complement(15487..16597)
                     /locus_tag="ACHFOB_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002816965.1"
                     /note="frameshifted; internal stop; incomplete; missing
                     N-terminus; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0814 family flagellar-dependent secreted
                     protein"
BASE COUNT         5899 a         2763 c         2266 g         5669 t
ORIGIN      
        1 ttttcaaagg aaaaatattg aagttattat tcacttcctt ttgttgtttt gcaagtttaa
       61 tggctagcga tgccattaac tgcgacaaca ttaaaaacaa taaaacattg ctaaatgaaa
      121 gttcaaattt agattatcta aattgcaaag aatctttaaa aaatcaagat tttacaaaaa
      181 aactctatgc aatttccaat gaaattcgtg gaggaaatag ttcttgtaat ggtatagctt
      241 atttgccaaa attacaacaa tttaatttgc tattgttaaa aatagccatc gaccccatca
      301 cttatcaaaa aactttagat acacctgaga atttagaaaa aaaatatgat attttaaaat
      361 cttactttag atattgggca tatcaaagta taggaaattt tagactttac aaagcttttt
      421 ggcaagaata caataacgct atagaacctt tagaaaagta ttttgaaagc aattttaatt
      481 ttgacaaagg tagcaatatt tactatacta gcaatgcctt aaacgaattt ttaaattggg
      541 ctgttggaga aacaaaaatt tacaaagaca ttagtccttt agcaaaaatc atgtcaaata
      601 aaaattattc ggtatcttat atacaagatt ttattttttc aaataatcca agtcaagatg
      661 atcttactat agccttacaa gcagcgcttc taaatcaaag agaaaaagaa attttagaac
      721 ttttgattcg ttttggcact aggattgacg aaggttatga aagtgctatt ttttacgcat
      781 tggaaaatta tgaaaataca aattttttaa tccaaaatgg agcgaatgtt aatcaagcca
      841 atgcctttgg taaaacccca cttttttatg ccatagagtt taatcgtctt gatatcataa
      901 aactacttct tgataatgga gcaaatgtta atcaaaaata tattaataac aatgaaaaat
      961 tagcattaag tgcgaacata ggttcaaata cgccttattt tattacattt tgtgctctag
     1021 agcacacttc aaaaaatgtt ttaatgcatg ctgcagccta tggaaatgtt gaaattttaa
     1081 aacttcttat ttcaaaagga gcaaatttta atgctgttga tgatcttggt tttaatgcac
     1141 tcgactttgc gctatcagca ggtaaaaaag aaaatgctga ttatctaaaa agcttgggtt
     1201 taaaagcaaa cgaaaatcta ttttacggag gtagtttaga atgaaaaccg catttattac
     1261 aggagctagt tcaggttttg gtagagcttg cgttgaagct tttatacaag aaggctacaa
     1321 agtaatcgcc cttgctagac gcaaagagcg tctagaagag ttaaaaaatg ctcacaaaga
     1381 taagatttac acgctttgca tagatgtaag aaatcaaaaa gaaatctttg aggctattga
     1441 aaatttaccc aaagaatttc aagaaattga tgtgcttttt aataatgcag gtttagcttt
     1501 aggggtagat gaatttgata aattaaacct tgaagatatt aacactatga ttgatacaaa
     1561 catcaaagga tttttatatg ttgcaaaagc tgttattcct atacttcgta aacaaaaaaa
     1621 tgcttatatt tttaacttag gttcggttgc aggacgcaat ccttattttg gaggcaatgt
     1681 atattgtgga accaaagcct ttgtaggaca attttcattg gccttaagaa atgatcttag
     1741 aggaagcaat atcaaagtaa caaacattgc tccaggactt tgcaaaactg aatttagtca
     1801 agtgcgtttt aaaggagata tccaaaaagc tgatgcagtc tatgaaaata cgcaatttat
     1861 cagtgctaat gatattgcca aagtggtaat gtctatcatt aacctaccaa gccatattaa
     1921 tgttaatgaa atcgagctta tgccggtaac acaaacttgg aatggatttt atatagaaag
     1981 agatgaatga ataaattttt agtttcattg tttttacctt tagttgcatt tgcaaactcc
     2041 tcagaagcag ctgcaaatgc taatttattt ggagctttta cacttatacc gcctttagtt
     2101 gctattgctt tagcctttat cacaaaagat gttattttgt cactctttgc tggagtttta
     2161 agtggaactt ttctgctcag tctttctgca aatattttta aagcacaaca tttagctttt
     2221 gtaaattttt ataatactgc agtagaatct ttttcaaaga ttatttctta tatcttaggt
     2281 tcaacttctg atccagtaaa tgcgggaatc attttacaaa ttctttgtat aggtggtctt
     2341 gtggcactta tcacaaaaat gggtggtgca aaagctgtag cattaaaatt tgccaaaaga
     2401 gccaaatcag ctgtatcagc tcaagttaat acttggtttt tagggctttt aatatttttt
     2461 gatgattatg ctaatttact gattgtaggt cctattatgc gtcctttggc ggataaattt
     2521 aaaatttctc gtgaaaaatt tgcctttatt attgactcta ccgcagctcc tgtagcagga
     2581 atagccgtaa tttctacttg gataggttta gaagtttctt taattaaaac cgcttatgaa
     2641 cacataggca ttagcgatat tagtgctttt ggaatttttg tcgaaaccat accttatcgt
     2701 ttttataata tcttcatgct tttttttgta gtcatgactg caatcatggg gcgtgagttt
     2761 ggttctatgt ataaggctga agtgcgagca agaaccacag ggcaaattgc acctctacct
     2821 aagtcaggta cactagatac tgctgagtta gaagatcagt ttttagcacc aaaagaaggt
     2881 attaaaattc gtgcttttga tgctattgtt cctattttta ctttaatcat tttagctata
     2941 ttaggatttt attttaatgg acttagcact ttagaaggcg aagaacttgc aaaagcaagt
     3001 gctaatcctt tgtcttttga aacttttagg gctgcttttg gaaatgctga ttcttctgtg
     3061 gtattattcc aagctgcttt gtttgctgct attgtagcga tttttatcgg agttcgtcgt
     3121 aaaattttca atctcaaaga agcagtagaa acttggatat atggctggaa aaccatgatt
     3181 tttactatag tcttactttt atttgcttgg tcgctttcaa gtatagtaaa agatctaggg
     3241 acttctttat ttatcactag tttgcttgca gataaattgc ctgagtttat tttgcctgct
     3301 actatttttg cttttgcttc agctatttct tttgccatag gaacaagcta tggaactatg
     3361 gggattttaa tgcctttggc tgtgccttta gctcatgaaa tcgccaaaat caatggtatg
     3421 gatgcaaatg ctatgcatca ttatatggtc attaatataa gctgcgtttt aacaggtgcg
     3481 atttttggaa accattgctc accaatttca gataatgtaa tcctttcatc tatgagtgcg
     3541 aaatgcgatc atatggagca tgtaagaaca caaattcctt atgctttatt tatctgtggt
     3601 atttctttaa tcgctggata tattcctgta tctttaggga ttagtgtttg gtttgtcttg
     3661 cctttaaatt tcatacttat tgcgctttta ctaagactca tcggaaagaa agttccatga
     3721 gtcttgaaaa ttttggaaat tttctcactt tagatgaaaa acattctttc ataaaaaaat
     3781 attttaaaga attttataca aaggatttta aactttttac ctcaaaagat aagcattatc
     3841 gcacaagagc tgagctttca ttttatcatg aaaatgatac acttttttat gcgatgtttg
     3901 atccaaaaag taaaaaaaag tacattatag aatatttaga ttttgctgat gaaaaaattt
     3961 gtgcttttat gccaaaactt ttagaatact tgcgtcaaga tgataaatta aaagaaaaac
     4021 tttttggcgt ggagttttta accacaaagc aagaacttag cgtaacctta ctctatcata
     4081 aaaatataga ggatataaag tcaaatttag aaaatttaag caataatctt catatcaacc
     4141 ttatagcaag aagtaaaggc aaaaaactta tttttaaaac agaaaatcta agacaaactt
     4201 taaatattca agatagaaaa atattttatg aatttaacaa cgattgtttt attcagccta
     4261 atactgctat aaatgaaaaa atgattactt gggtgtgtga aattttaaat actcaaaaaa
     4321 gaatggattt acttgagctt tactgtggat atggaaattt tactttagct ttagcaccat
     4381 tcttttttaa agttttggcc actgaaattt caaaaagcaa tattaatttt gctttaaaaa
     4441 attgcgagct taataataca acaaatatcc actttgcaag actttcaagc gaagaattaa
     4501 gtcttgctat caaaaaagaa agagaatttt ttcgtttaaa agatattcga ttggatgatt
     4561 ttaatttctc tcatgtttta gttgatccac cccgtgcagg acttgataaa agcgtaattg
     4621 acttaataaa aaaatatgaa aatattattt atatttcttg caatcctatc actttaaaag
     4681 aaaatttaaa agaattaagc ctaacacata gagtggaaga gtttgctctg tttgatcaat
     4741 ttgtcaatac tccacatctt gaatgcggag tatttcttag caaggtataa aaaaataatt
     4801 cattaattta gccagtatta ctatcgcgat acaaagcaca aatacaaaag ggtggataaa
     4861 agcaccaagt gggtttttct tctttaatat aaaatgacaa aataaagaaa aaacaactaa
     4921 agataaaatt ccaaaagcca aaataatttt tacagcaaaa agtaaattta aaggtttaaa
     4981 atgaaaacct gccaaagcac ctccgcttaa aaaagcaaaa gaaccacaaa aggcattatt
     5041 ttaactccag tagcactaaa aagacttttg tcaaaattag gatttttctt tttaactaca
     5101 cccaaaacaa atacatcaac aaacaaataa cctataaaca aaatagcaca aagaagatgg
     5161 attgttaaag tatatggata aaattcttcc atttttccct ccttattaaa cttcggaatt
     5221 tgctatatta taacactttt ttcatttttt gaattcactt tagttaattt tttaatcatt
     5281 taagataaaa taccaaaata aaggttaaca atgaacgaaa aagaaactat ctcttatatt
     5341 ataaatacaa gtaaaaatat tgccatattt gctttaagtc cagataagac aaaagcttct
     5401 tatagggtag cagaattttt acaaagaaaa aattataaaa tttttcctat ttatcctaaa
     5461 gaagagttta ttttaaatga aaaagtttat agaaatttag atcaaataga agaaaaaatc
     5521 gatacactta tactttttag aaaaggcaaa gtggcgctag aaattcttcc taagcttgtt
     5581 gaaaaaaata ttaaaaacct atggcttcaa cttggtatta gcaatgaaac agccaaaaaa
     5641 gaatgtaaaa aattagatat aaattttata caaaatcgtt gcattatgct agaatatccg
     5701 tattttaaaa caaaggaaaa atagtgttag agcttaataa aatttacaaa gcaaaacaac
     5761 aaatttcagg atttgtaaac aaaactcctt tcatatactc ttctttttta agtgatattt
     5821 gtcaaagtga aatttatctt aaaaatgaaa atttacaaat tacaggtgct tataaaattc
     5881 gtggagctta taataaaata gccaatctta gtactgaaca aaaacaacat ggagtcattg
     5941 ccgcaagtgc gggaaaccat gctcaaggcg tggccattag tgcaaaaaaa tttggcatta
     6001 aagcagttat tgtaatgcca gaatccactc cgctcttaaa agtttctgct acaaaagcct
     6061 taggagcaga ggtgatactc aaaggggaca attttgatga agcttatgcc tttgcaacct
     6121 cttatgctaa agaaaataat cttagcttta tccatccttt tgaagatgaa tttgtaatgg
     6181 caggacaagg aactttgatg cttgaaatgc ttgatgaaat aagcgatctt gatatgatta
     6241 tcgcacctgt tggaggtgga ggacttataa gtggtatcgc aagtgcagct aaacaaatca
     6301 atccaaacat taaaatcatc ggagttggag ccaaaggagc tcctgcaatg tatgaaagtt
     6361 ttcatgctaa aaaaatcaaa aatgcaaaaa gcgtacgcac tatagccgat ggtattgctg
     6421 tgcgtgatgc aaatcctatt aattttaata ttattttaga atgcgtagat gattttatcc
     6481 aagttgatga tgaagaaatc gctaatgcgg tattgttttt acttgaaaaa cataaaatca
     6541 tagttgaagg cgcaggagct gcgagtgtag ccaccctact tcatcaaaaa ataaatacac
     6601 aaaatcataa aaaaattggc gtagttttaa gcggaggcaa tatcgatgca caaatgctaa
     6661 atatcatcat agaaaaaggt ttatttaaat cttacagaaa aatgcaaatt catgttactt
     6721 tagtagataa acctggggca ttattacacc ttacagatag cttaaaaata gccaatgcca
     6781 atatagtaaa aatcgactat gatagatttt ctaccaagct tgattatggc gatgcgatga
     6841 tttcaattac cctagaaacc aaaggtaaag aacatcaaga agaaataaga aaaattttaa
     6901 cccaaaaggc ctttaatttc tatgaaagtt tttaataaca tatacggctt aaataaagcc
     6961 catttggcgg tgctaaaaag tgattgtatt gctttttggc ctcaatctgt tctttgagtt
     7021 ctttttcact catttttcct tctaaaacct ttaaaacact tgctacgctt aatctaattt
     7081 gccctcttaa aaaaccatta gctttaaaat gaaaaatgct aaaatcttta taagcataag
     7141 ctctagcaat aaaaatttct cttaaagtcg ttttattatc tcctccactt ttgcaaaaaa
     7201 actttaaatc cttttttcct acaaaaaaac ccaaaagctc gttagcctta tctaagtcaa
     7261 atttaggata aaaatgtaca taagaagcca taaaaggact ataagaagag tgagaaaata
     7321 tatagcggta ttctctactt tttacatcaa atcttacttc aaaatcatct tttacttttt
     7381 caattttttt gatatggata aaaggatggg aaaatttatt aagctgtttt tgaagatatt
     7441 ctaaatttac aaaatgatct ccacacccca cactagctac agcatagctt gcatgtactc
     7501 ctttatctgt acgagaagcc atcaaaagag gtgaaacaat acccaaatgc gataaggccc
     7561 cacttaaagc atcttgaaca ccttttttat gaggctgact agcagaacct aaaaaagcag
     7621 agccatcata agaaaatata atttttattt tcatcaataa cgactcaaaa tcattttctt
     7681 aaaacaataa gccgaaacaa ataaacttaa agaaaaaatt ccaaggcaag ccaaaattgg
     7741 aggttgagaa aaagaactta aaagtccaaa atatatagca atcactccaa acatacctaa
     7801 atacacatag cctttttcat aacgataagt aaccaaacca aaacaaagcg caaaaagcgt
     7861 actagcaagt ggaaacaagg ctatggttgt ataaatcaca aattctcttg ctctttgtgg
     7921 attttcgttt aaatcattcc agtattcata aaatttcttt gtttgaagat tgtctgtatt
     7981 aaactgagtg tttactacta aagtgtcaaa ttctccacta aaaatacttt gaccttgctc
     8041 aaaattatac attttgcctt gattcaagct aaaagcaaag ctatcatctt ttctttgcac
     8101 atgcgcttct ttggctatga taagttgttc tttatcatct gctttatgtt tagggcgata
     8161 cataattatg ttttcatact tatcactatc ttgtttttct ataaaaatca tccagtctaa
     8221 aaatttttgt ccaaattctc ctgttttgta gttaaatttc acttgagtgc ttttatagtt
     8281 tacaaagtta tcctgaagtt caaatactat aggtatcatt accaaagcca caacaagcat
     8341 aaaagcacta atcaagcttg caattttaag gaaaaatttt gccaaaatca ttggtgaaaa
     8401 tcccaaagta aaaagtacta tgctttcatt ttccttagaa agcctaaaca aagccaaagt
     8461 taaagaaata aaaaaagata taggcaaggt aaaaattaaa attctaggca acataaaccc
     8521 ataaagcttt aaaagatcca aaaaactaat ctctatgctt gaagtaagtt ttgcaagttg
     8581 aataaaaaac accatagata caatagcaaa aagtacgaaa aatatagaca aattcgtact
     8641 taaaaattga tttaaaacat atcttaaact aagcttcatt agaataatcc taagttttta
     8701 taaaataaaa ctgccacaaa agcgatattt aaaaagggta tcatagcaag ttcttgctct
     8761 tttattgctt taattttaaa aaaaataaaa aaaggcaaag ttaaaataga agctataagt
     8821 aatactaaaa atccatactc aaaacctaaa attccaccta tacaagacat aatgataata
     8881 tcagcatcac ccaaattttc taaaatttca tctttttttc ggaaattcat tagaaaaaaa
     8941 accaaacttt ttaataaaaa aacaaatcct ccaaaactaa aagcatttag caaaaaacct
     9001 ccgctaaact ctttaaaaat caaaaaatgt aaaatttcac tttccctaaa ggcgtaaaaa
     9061 aaagcaaata aaaaagcgct ccaaagtaaa atttgtggta cggctttgag tttaatatca
     9121 attaaagaaa gcaagaaaag attaaataaa aatagagata aaaataaaaa atcataaaaa
     9181 ttttgactta aagaataagc caaaataagc aaaattatgc ctaaaatttc attgattaac
     9241 aaagaaatag gcaaatgaca tttgcaagtt tgacattttg cctttaaaaa aatataagaa
     9301 aaaataggaa taatttcata gtattttaat tttgtatcgc aagaaaaaca aaaagagcgc
     9361 gagataaaaa atggcttttt ttcaattatc ctacttgcca aacttgtgca aaaagaaccc
     9421 aaacaagccc ctagaattat tatgaaaaat atcattttcc aaaagttctt tctctatttc
     9481 taaattcttt aataatcctt ttaaattctc tcttggtaag agatggaaat aaagtttcac
     9541 taaaataaat ttcagcatat gaacactgcc aaagtaagaa atttgaaagt cttttggcat
     9601 ttccaacgcg aagcatcaaa tccacatcta aaggtaaatc taaattttgc gttaaatttt
     9661 cttcatttag ctcaagtttt ttttcaatca cacgcttagc agctcttata atttcatctc
     9721 ttgcaccata acttatagcc aaattaacac aaagtgcgtc acaatgcttt gttttttctt
     9781 caactaaggt aattttttct cttactttat cttccaaacg cgataaatca cctatagctc
     9841 ttaaacgcac attatttttt tcaaattttt ctaaagcttc atctaaacaa cgatctaaaa
     9901 gttcaaaaat aaaatcaatt tcatctttag ggcgcttcca attttccgta ctaaaagcaa
     9961 aaaggcttaa atttgaaata ttttcctcca tgcaaacttc catcaatttt tgcatagttt
    10021 tgactccttg agaatatcca agttttgcca aaaaaccctt agccctagcc cagcgcctat
    10081 tgccatccat aacaacagca aggtgtttta attcattcat ttttcatcct ttaaaatcaa
    10141 aaagcctttt aaaaacaaac aaaggttcaa tcttgttttc ttgcgataca ttaaaatcta
    10201 aatgttcatt taaaaatttt tgcaccttag caaaaggtgt aaaaacacta atgccttgcg
    10261 agtctattaa aattttcaaa gctccaaaaa cactaaaata taagtaaatt tctaaatatt
    10321 ttgctctttt acgcatttga aacaagcaag atttattttc aaaaataaaa ggaatatgat
    10381 aaatattttc aaaacttgca aaaagcattt cttttaatat ctgataacgc tctatatctt
    10441 tacaatctaa aagattttgt atgatgaatt ttttataaga aattttatcc tgtaaaatag
    10501 cgattatcaa agccaatccc tcttcaaaag gtttaaaatt aggacgcttt gaaagatgtt
    10561 taaattgtat aactccacca ttttgcatat aaagttcagc taaatattca gcgccaattt
    10621 caagctctat catgctttta gtttgaatct ttttgtgatt taacaaaagc gtataatgtc
    10681 catagcctga tttagccaaa actttcattt gtataggcaa ggtagaatta atcatactca
    10741 taatttttca caccatttta ctaattcaaa tgccaatttt tctttgcttt gcaaagtgct
    10801 tttattttca ttgtttaaag tgataaaata aagttcattt tgatcacttc caaaataatt
    10861 tttttgatca atgatattaa gacaaaccat atcaagttgt ttatctttta gagatttttt
    10921 cgcattttct aaggcatttt gagaatcaaa ttccatctta aaacctatct ttttgccttg
    10981 aaatttacaa gttttaagca aatcttcatt taaagataga tgtaaattta aaccctgcaa
    11041 atgctcattt tttttaattt ttccttttac actttgaggg ataaaatcac tcactgcagc
    11101 cgtcataatc aaaaaatcat gatttaaatt tttatccaaa agctccttta gatccttaga
    11161 actttcaaat ttgcaaagct cataaggcgt atcaaattcc acagagctta aaagttttac
    11221 cctagctcct aaaaaataaa aagcatcagc tatggccttt gccatttttc cacttgaaaa
    11281 attactcaca caacgcacat catcgattct ttcccttgtg ctgccacctg tgataactac
    11341 gcttttatcg caccaaaact tttcttttaa aagttctctt ttggtgatat taaaaatatc
    11401 cttaacttca gctaaggctc ctacgccttc atctttacaa gctaaaactt tacaaatagg
    11461 ctctataatc aaagctttat tttctttaag tatctttaaa gaattttgtg tgctaaaatg
    11521 atgaaacata tttgtatttg ccgcaggagc tatgataaga ggtttatttg ctgcgattaa
    11581 ggtttggata aaaagattat ccgctatacc aaaagcaagt ttattgatag aattaacact
    11641 tgcaggagca aataaaacaa gatctacatc cttactaaaa gctatgtgat tgtttgaatt
    11701 ttgccaactt tcattttcct cgcataaaac ttcatcaacc aaggcttcaa aactcatttt
    11761 gctagcaaat tttaacaaac cattagaaag caaaactttc accctaaagt cttctttttt
    11821 aaacaaagaa ataagctcgt aagatttata aaaagctatg ctaccgctaa tggctaaaag
    11881 tatggttttc atttttgaaa tttcttgtaa taataatctt ttatcatttt atgctctgct
    11941 ctattgataa acaaagcacc tttttctaca ttgacactta ctgtgcttcc tgctgctatg
    12001 attacttcat cttcgatttt tacaggtgcg ataaattgcg tatcagaacc tacaaaaaca
    12061 ttttttccta tgatggtttt atgctttttt accccatcat aattacatgt aatagtccca
    12121 cagcctatat tggttccact atctatctca caatctccca aatagctcaa atgccctgct
    12181 tttacggtat ttaactttgc atttttgcat tctacaaaat ttcctatatg agtgtttttt
    12241 aactcacaat ttggacgcaa atgtgccaaa ggccccacat cgctattttc tacaatggaa
    12301 ttttctatta cgcttgaact tttaatgata gagtttataa tcttactttt gccctctatc
    12361 cttacatttt catatacttc acattcacct acaaattcaa catctgcacc tataaaagtg
    12421 ctttgcggta aatgaaaaat cacaccctgt tgcatccagt attttttaat tttttcttgc
    12481 atgaaatttt cagctatact gagttcaaat ttatcattaa tccccataaa ttcatcttca
    12541 tctacaaaaa ctgctttaat catcacatct ttttcttttg ctagttttac aatgtcggtt
    12601 aaataatact cttttgccgc attattgtta tcaatcaaag gtaaaagctc ttttaaaagc
    12661 ctcgagtcaa tcacataaac cccagcattg caagtattta tctctttttc ttgcgtattt
    12721 gcatctttaa attcaacaat tttttcaacg ctatcgtttt ttatcaccac cctaccataa
    12781 cttttaggat ctcttgcttt aaaaactgct agatttaatt ttgcattatt actcaacaaa
    12841 gcttccaaac ttgtttgctc aaccaaaggc atatcaccac aaagaatcaa cactctttca
    12901 tttttaggct caaacccact taaagctccc gcagttcctg gataattttg caaatcttgc
    12961 tctaaaattt gtgtttttgg aaaatattct aaaatttctt tttcaacgcg ttctttttga
    13021 tgcgataaaa ctacacttac atcatcactt aaagcaaaag ccttttttaa aatgtgtaaa
    13081 atcatacttt tttgacaaag ctcttgcaaa acctttggct tttgtgattt tattctagtg
    13141 cctaatcctg ccgctaaaat caaaatagaa gttttcattt tttacctttg ttattaagaa
    13201 gtctaaaaga ctattttagc agtttaaagt taaaatccta atacccttaa actagttttt
    13261 agtcatcaaa agataaaatt taaatttctt tagtaaaaaa caaaaaaagg tttttaaatt
    13321 ttgaaaaaaa tattattatt tttactttta agcatgagct tatttgctgc tgaagcaact
    13381 atccctacag taaatttaag cttaagtgca cccaatacac ctaatcagct tgttactact
    13441 ttaaatatag tgattgtttt aaccatactt gcgctcgctc caagtatagt ttttgttatg
    13501 acttctttct tgcgtcttat tgtagtattt tcatttttgc gacaagctat ggggacgcaa
    13561 agtatgccac ctaataccat tttagtaacc ttggctttaa ttttaacttt ttttatcatg
    13621 gaacctgtag ctacaaaatc ctataatgaa ggtataaaac cttatttagc agaaaaaata
    13681 ggctatgaag aggcttttat aaaaggagca aagcctttta aagattttat gcttaaaaat
    13741 actcgcgaaa aagatttagc ccttttttat cgcatacgca atctacccaa tcccaaaacc
    13801 atagatgatg ttccccttac ggttttagtt cctgctttta tgatttcaga gcttaaaacc
    13861 gcttttgaaa tagggttttt aatctaccta ccctttttag tcatagatat ggttgtaagc
    13921 tcagttttaa tggctatggg tatgatgatg ctacctccta ctatgatctc tttacctttt
    13981 aaactcttaa tttttgtatt agtggatgga tggaatttgc tagtgcaaag gcttgtggaa
    14041 agctttgtaa cctaagattt ataaaatctt aaaaacaaaa ttccaagaaa aagatacaaa
    14101 agcaaaaata attctaaagc taaaagtata tacaaaaaca agcctttaac gcaaaaaaga
    14161 gctataaaaa caacaaaaag aattactaag gctgttcgcc ctagaaagac tttttctagg
    14221 gtcttgatag aataaaaagt aaaatctaaa ataagagtaa aaataaattc tagcattgta
    14281 aaatacaccc aaaaactaag cttagtggca tcttgcagcc atcatgtcaa tttttgaatt
    14341 gtaagtactt ccgcccggtg caggtgcatt cgcaacccca gcacctacta cccccaatct
    14401 tattccataa tttaaaatta aaggtatagc tctatcttct tgataagcat atttgcaata
    14461 ctccctagct gcgtttagta cagtgcaaga taaaaacaaa aataacaaaa aaaatgcaac
    14521 ttttttcatt atcttaaatc cttttattta aaatttagat aatgatattg tatatcaaaa
    14581 ttcataaaat taatattaat tatcaatatt ttattaaaag cctacaagaa aaaagtgata
    14641 ttattttgct taaaaacttc tttaatgtct tttaaatact tattgcccaa aaaatctaaa
    14701 aagccatttt tcctactctc atcaatgaaa ttatcaagct tgtcctttaa agcttcatca
    14761 ccttttctta cagctatacc ccaaaactca ggattttctt gaaaaggcgc taaaatggct
    14821 ctggttgtat cttgatgctt ttgccaagtc cgataaatcg taagttgatc ataaaaaaat
    14881 ccatcagcct tgccttgaat cacttccaaa atagcagcat tttctttatc aaataaatta
    14941 atagttgcat tttttaaatt tttaaccgca tataaatgcc ctgtagaacc acgctttaaa
    15001 gccaaaactt tgcccttttt atctaaatct ttgatatttg taatatcaga gttcaaagga
    15061 gttaaaatag ccaaatttgc cttagcataa ggaatgctaa aatccaccac tttctttctc
    15121 ttatcggtaa ttgtcataga ggacataata agatctatct tggctgtttt taaagcaggt
    15181 attaaaccat cccaagcgat attttttact acaagtttat agccgttttt ctttgcaaaa
    15241 gcttctaaaa aatccacgct aattccactt gctttgcctg ttttatcgct catttcaaaa
    15301 ggcggatatc caagctccat tcctacaacc aaatcttttg cactcaaatt taaagcaaaa
    15361 aaagagataa aaatcaaaat aatttttttc ataatttcct ttcaattttt tttgtaaaaa
    15421 aattatacta gttttatctt attttgttat tagcaattta tttcaaactt aaaaaattaa
    15481 tacttcctaa accctagttt gtcccaaaag attatttaat ctatccatta tagaatcagc
    15541 gtaggaatca atagtgctag gttttgcttt ccaaccatta gcaagagctt gtttaatctc
    15601 agcgtctaaa gcccaattac ccatagcaga ttctttagaa atgttatttt catacatata
    15661 taaatcacct tctatgccac gctctgccca gtatctaaaa aagcttttaa agtcactttt
    15721 acctgtcata atactatcaa tgttaattgc aggaccacta aaactctctt tagccatagc
    15781 cctcttgtaa gcttctaatt ttggattaag tgtggttttt agactctcaa caggttgtcc
    15841 accttgagct tttaaaaaac tcataaacaa agtttcttta gaatagcttc catcttcatt
    15901 ttgtggataa actgacatat caggattaaa ttgccaatct tcacctctag aaacattttt
    15961 gatttcttct aaggataaac ctaaagtctc agatgataat cctttgatca tacatcctga
    16021 atcaagtcaa atttcatcag cttcttttgc ttgttcaggg gttttataaa catttgaaat
    16081 taaagaattt gaaaaatctt ttaaacctgt aatattcatt ctattgcttg gctcattaaa
    16141 gtccatccat tgcgttccac ttacaccata accactaggc atagaattta tatctgcttc
    16201 agtgaaactt gttttattgg tatcattaaa agcataatta acaatttgat taaattgatt
    16261 ataatattgt tttatggttt cagccatatc gatattagta taatactcgc ttacgcctaa
    16321 gtattctttt gtacttgaaa caacaggatc attttcggca gcttttttaa tctcatctag
    16381 tagatttatg tatcttaaaa tcttcaggca atcctgcagc tttgttaaaa tcacttccca
    16441 tataaccatc tttatctaca ctataaccat aggctgtatt agtagaagta ttacttatat
    16501 ctgcttgttt atattttaga gtataaatag agtttttaaa ttcactagat atatcataat
    16561 taggagaact tgttttacta cttatactaa aattagt
//
LOCUS       DAZBIH010000030        16425 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.030, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000030 DAZBIH010000000
VERSION     DAZBIH010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16425)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16425)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16425
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.030"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            44..1714
                     /gene="rpsA"
                     /locus_tag="ACHFOB_000787"
     CDS             44..1714
                     /gene="rpsA"
                     /locus_tag="ACHFOB_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HFN5799600.1"
                     /translation="MSEVNKKVQGGVDDYLEEEDFGQLLEAFDKSREEATTEGVIVEI
                     KNDEVYVDIGKKSEGILALSEIQGDNSKLLFNVGDSIKVAVMGSRGGRSLLSHKKALR
                     KEKVIEFIKNYQENQDDIFTVKVVGKNKGGLIVVDENDVEFFLPKSQYGFKETNNIIG
                     KTFKVKIIKIDKDEQSIIVSRKKTLDDERRKRKELINNIAQQEDLIEGIVKKITTYGM
                     FVDVGGVDGLVHYSEISYKGPVNPGTLYKEGDKVPVKVIKYDKERKHLSLSIKAALPD
                     PWSEIKDTLDVGDTIKVIVSNIEPYGAFVDLGNDIEGFLHISEISWDKNIKNPKDYIN
                     KGQEIDVEVIEINPNERRLRVSLRNLLSRPFDGFMKSYKIADVVEGEITSVTSFGAFV
                     KLGGIEGLLHNEDASWDRNDKCKDKFSQGDKIKVKIIKIDEENQKISLSTKELSSSPV
                     QEYAKIHKVGDIVKGTIRDIKDFGVFVELSKNVDALIHKEDISTSMLENLKIGDDIEA
                     AIVFIDEKKNRIRLSVKNLVRMKEREVLNEINNDDKVTLGDIIKDQLA"
     gene            1714..2202
                     /locus_tag="ACHFOB_000788"
     CDS             1714..2202
                     /locus_tag="ACHFOB_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799601.1"
                     /translation="MKKYITISILSILLLILLAVVFTLLWQFKANVNFIPQFAKDTNT
                     QPSIQTQNQDLSWQEELAKWPTRDFTPAAEKFTLYFDADTSELKEKNKYYQLIVGKYD
                     IYSMFCLRQTLNSFNVKYFLLKSGDSPEIFLDTGNEKLIDDIIKELKKYKINTEVKEI
                     WL"
     gene            2199..3782
                     /gene="serA"
                     /locus_tag="ACHFOB_000789"
     CDS             2199..3782
                     /gene="serA"
                     /locus_tag="ACHFOB_000789"
                     /EC_number="1.1.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004617 - phosphoglycerate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HFN5799602.1"
                     /translation="MKKKIIVCDAILDKGVDILRKAEDIELIEAAKVPKDELMQMLSD
                     VEVAITRSSTDVDVNFLNHAKKLKALVRAGVGVDNVDIPECSKRGVIVMNVPTANTIA
                     AVELTMAHLLTSARSFVNAHNFLKIERKWEREKWYGIELMNKTLGVIGFGNIGSRVAI
                     RAKAFGMKILAYDPYISASKITDLDMEQAKNLDEILEKSDFITIHTPKTKETNGMIGK
                     QEIAKMKDGIRLINCARGGLYTEEALYEGLKSGKIAWLGIDVFDKEPATNHPLLDFEN
                     ISVTSHLGANTLESQDNIAREACEQALSAARGVAYPNALNLPIKTEDLPPFVAPYIEL
                     VSKMAFLAVQIDKNPIKSIKLEAEGIIGEYANSMLTFAAVGALGGILGEKINYVNAEF
                     VAKEKGVELSCETLPNSGYNNKLSVKIITENSNISVSGTVFNENEQRIVGLNGFKTDF
                     KPKGKMVIFKNKDIPGVIAKISSVLAAKNINIADFRLGRDGFGYALAVVLIDEKVQKE
                     VLDELKQLEACVFVQYVEI"
     gene            3769..4431
                     /locus_tag="ACHFOB_000790"
     CDS             3769..4431
                     /locus_tag="ACHFOB_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HFN5799603.1"
                     /translation="MLKFKILIIEDDIDLNELLVLKLKSSGYEVISLADFFGVEDLLD
                     NEQIDLLIVDRNLPSGDSLEKIQDLREQGYKEAVIFLTAKALHQDLLEGFESGCDDYV
                     CKPFDFNELLLRIKAILKRHKKEEEKLSFGDFILDLANYEFFYKNQKLEISNLDYELL
                     KCFFENPNTLLTRQFLSESVWKDDTTSDKTINIALTRLRNKFPKLKDHIISVRGVGYK
                     LC"
     gene            4425..5714
                     /locus_tag="ACHFOB_000791"
     CDS             4425..5714
                     /locus_tag="ACHFOB_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HFN5799604.1"
                     /translation="MLKTKNIFIVFFVVLALIFGFIFYTFTNSYLNFLLTKQYEQKIK
                     SLDDVLKFSLLEHLNDANIKDFAKDTRADFIILNNDMKISSVKNPDFFSNLKEGEILN
                     FNSKKILTKSFIYKGYKYIIIVYPRFLDLELFWIKIAIGFGVCLLFVFILMLLLGRRI
                     EKNFNKILDFLDSISDHKVVILEKGMFKEFNLLNEKLLKTKDKILKNTQKNKKQSDKI
                     TLKNTQLASVISAISHELKNPLSVIDLSLEILKDEKLEDKKLKKELLEKISRQSIKLN
                     ALTHKLNFVFNLNSEALQMQEFDLFFLCEKITKNPGFERVVLQGKNTKVKADEFLIEQ
                     VIINLLSNALKYSQKEVILTARDQKIIVQDFGKGIEEDKIKLITKKFYKIDVKSDNSF
                     GLGLFLVKKILNIHKSYLEISSTLGYGSSFSFKLSQG"
     gene            5718..7649
                     /gene="abc-f"
                     /locus_tag="ACHFOB_000792"
     CDS             5718..7649
                     /gene="abc-f"
                     /locus_tag="ACHFOB_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protection-like ABC-F family protein"
                     /protein_id="HFN5799605.1"
                     /translation="MALIDLIEASKKFGDKIVLNEANFSANEGEKIAIIGKNGEGKST
                     FLKTLLGTLPLDSGRVIRQNGKSIAMLSQTVDFNANLSVKEAIKQELAEIYNALEEYE
                     ILHKKLEEEPNNKDYLKKIDTLMTLIDSKDAWNIESKIIRVLKEFSLLEYENRIISTL
                     SGGEIRRVGLCILLLKNPDILLLDEPTNHLDVYMTSFLEELLKNSKMCVIFISHDRYF
                     IDAIAHKCVEVEQGKLSIFKGGYANYLEKKTQILQSLAKSHETLLKQLKSEEEWLRRG
                     VKARLKRNEGRKERIFKMREEAKKNPGAIKRLKLEISRAALNFNGEKTINRKKMLFEL
                     KNISKNINDKNLFKDFSTRILQGERIAIVGRNGCGKSTLLKILLGQIKQDSGEIKRGE
                     LKIGYFDQARSLVNSDKSLLEIFCPNGGDRVEVRGKNMHVYGYLKNFLFPKEFLDKSV
                     ALLSGGEKNRVALALLFTKEYDVLILDEPTNDLDIATINILEEYLLSFEGAILLVSHD
                     RYFVDKIATKLYAFEGDGYINILHTLYTEYLENEKEIEELDNFALELQTQEQNNNQKE
                     KSSKKLSYKENEILKNYPEKIDFLEQKIAKLNQDLSDPNVYQEIGINKLYQELEVMQK
                     ELEILENEYFLVLEKSENL"
     gene            complement(7679..7753)
                     /locus_tag="ACHFOB_000793"
     tRNA            complement(7679..7753)
                     /locus_tag="ACHFOB_000793"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7719..7721),aa:Gly,seq:gcc)
     gene            complement(7764..7850)
                     /locus_tag="ACHFOB_000794"
     tRNA            complement(7764..7850)
                     /locus_tag="ACHFOB_000794"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(7814..7816),aa:Leu,seq:caa)
     gene            8031..10283
                     /gene="flgL"
                     /locus_tag="ACHFOB_000795"
     CDS             8031..10283
                     /gene="flgL"
                     /locus_tag="ACHFOB_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgL"
                     /protein_id="HFN5799606.1"
                     /translation="MRITNKLNFTNSVNNSMGGQSALYQISQQLASGLKIQNSYEDAS
                     TYIDNTRLEYEIKTLEQVKESTSRAQEMTQNSMKALQDMVKLLEDFKVKVTQAASDSN
                     SQTSREAIAKELERIKESIVQLANTSVNGQYLFAGSQVANKPFDSNGNYYGDKNNINV
                     VTGAGTESPYNIPGWDLFFKADGDYKKQISTNVSFTDNRWDLTQNPDKTKYLTGDSKW
                     QQLIGQGYVKDNSLDADKDFEYDDSKLDFPPTTLYVQGTKPDGTSFKSAVLVKPEDTL
                     EDVMENIGALYGNTPNNKVVEVSMNDSGQIQITDLKQGNNKLDFHAVAFTPQADDKTE
                     LNNIIQAAQNEGITMEDVTNRVMTAALGNPNNGDITNLNNPVTIQINGQNFEIDLKQT
                     DFIKSKMTDTDGNAANGADYDNVYFEKNGNTVYGNVSQVIKGSNAYATDSTKLSEVMA
                     GDSLNGTTLNLKVNSKGGNSYDVTINLQTSTVSYPDPNNPGQTISFPIMHTNPATGNS
                     GVVTGSNDITYGQINDIIGMFAADKIPTTTIQANNGQINNADYTQIQQLMKDSQATVD
                     VSMDYKGRISVTDKLSSGTNIEISLSDSQSGQFPAPPFTTTSTVQNGPNFSFSANNSL
                     TIDEPNVDIIKDLDSMIDAVLKGNMRADSESENPRNTGMQGALERLDHLADHVSKLNT
                     TMGAYHNTIEGVNTRTSFLSVNVQSIKSNVIDVDYGEAMMNLMQVQLAYQASLKASTT
                     ISQLSLLNYM"
     gene            10393..13233
                     /gene="ftsK"
                     /locus_tag="ACHFOB_000796"
     CDS             10393..13233
                     /gene="ftsK"
                     /locus_tag="ACHFOB_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HFN5799607.1"
                     /translation="MLAPGMGEWVYKANLFLFGEFGYYYPFSLLILNYLYYKKKYKIE
                     NFKRRELFGFSLAFFSTLLLFSVFYREFGYILEIVYGFFSIILGRTGSGIFALLLLLF
                     SLVLLFPKFAKEILKIELDFTYLLKVEQAFKSLLMRVFGGENEKEDVGKSEPIAPKLN
                     ILQDSIYGNLQINKKGETNNLEQIIKDSNINASKNSITTAKENFEKLKNQILDETIEI
                     DKQSLKESRSFVHEHSQQVRNFAQKASKMSISLDEDFNFISEEEVDMIPERFLKPKKL
                     EDIKQIDTNKNLDEPSYKRKNIEIPVSNQEVKPKIFTKELELRENLIKKEKLEQEYKA
                     YQNEILENKVKQEIKKLEEYDAINSSDIIEGNKYSFNSPKTIKAETEESDKINENKNL
                     DKADNIFEFAPIVEELNHPYIEPTPIKNINEIVIEEKNTLDFIQNTETKIDNEKTNDQ
                     EIKLQKAVLAKEIAINQALLREIEQGEVEKPKDFTLPPLDFLANPKEHKQEINESEID
                     KKIYNLLEKLRRFKIGGDVISTYVGPVVTTFEFRPSADVKVSRILNLQDDLTMALMAK
                     SIRIQAPIPGKDVVGIEVPNDEIQTIYLREILQSEVFKNAKSPLTIALGKDIVGNAFV
                     TDLKKLPHLLIAGTTGSGKSVGINSMLLSLLYRNSPKTLRLMMIDPKMLEFSIYNDIP
                     HLLTPVITDPKKAVNALSNMVAEMERRYRLMADAKTKNIENYNEKMKELGGEELPFIV
                     VIIDELADLMMTAGKDVEFYIGRLAQMARASGIHLIVATQRPSVDVVTGLIKANLPSR
                     ISYKVGQKIDSKVILDAMGAESLLGRGDCLFTPPGTSSIVRLHAPFASEFEIEKIVDF
                     LKDQQSVEYDESFLKDQQSVGVTTNESFDGEVDELYEEAKRVILEDGKTSISYLQRRL
                     KIGYNRSANIIEQLTQNGILSEPDAKGQREIL"
     gene            complement(13319..13591)
                     /gene="rpsO"
                     /locus_tag="ACHFOB_000797"
     CDS             complement(13319..13591)
                     /gene="rpsO"
                     /locus_tag="ACHFOB_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HFN5799608.1"
                     /translation="MALDSAKKAEIVAKFAKKPGDTGSTEVQVALLTARIAELTEHLK
                     IYKKDFSSRLGLLKLVGQRKRLLSYLKRKDYNSYSKLITELNLRDK"
     gene            13766..14176
                     /locus_tag="ACHFOB_000798"
     CDS             13766..14176
                     /locus_tag="ACHFOB_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RrF2 family transcriptional regulator"
                     /protein_id="HFN5799609.1"
                     /translation="MLFTKASEYALLSLIYISQKETPQDVDSLALELDIPKSFLAKIL
                     QTLAKDGLLKSFKGAKGGFVLIKEPSQYTIKEIVNSAEKKDISVFECSGGTCPNNKEE
                     NCTLMPMLVNLQNKVDEFLDSITLEDIMKNNGKK"
     gene            14163..16337
                     /gene="flhA"
                     /locus_tag="ACHFOB_000799"
     CDS             14163..16337
                     /gene="flhA"
                     /locus_tag="ACHFOB_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HFN5799610.1"
                     /translation="MAKNKIVDLVFPFLGPLIAPVLKAKSLTIVGFLVCILAIIIVPL
                     PSPILDFFLALSIALSVLIILISIYIPKPTDLTTFPTLILIITLFRLSLNIATTRMIL
                     SEGQNGPEAVSEIIAAFGEFVVGGNMVIGVIVFCILVLINFMVVTKGSTRVSEVQARF
                     TLDAMPGKQMAIDADLNAGLIDEQTARARRQEVIAEANFYGAMDGSSKFIKGDAVAGI
                     IITIINIIGGFLIGSFQHDMALSDAASTYTILTIGDGLVSQIPGLITSTATAIIITRA
                     SKDEENFAEGTLTQLLSEYRTLLIVGFVLFIFALVPGLPTLSLGFMALVFLSLGYLTK
                     QVKEGKIDITTVKKSKPSAAVASQSGAGGTTAAPAKKSEEEILKEEEHKINDILKVEI
                     LELELGYGLIKLAENELTERIRSMRRSIAESLGFLMPKIRIRDNLRLKPNEYSFKLKG
                     VSIASAEIYPDKYLAMDSGFITEEIEGIATKEPAFNSDALWIDANLKDEATLNGYIVI
                     DPASVISTHMSELIKAHASELLTRQEVQNLLDKVKNDYPIIVEGALGVAPVSLIQKIL
                     KDLLKHHIPIKDMLTILESVSDIAEVSKSFDMIIEHVRASLARMITNMYLDDKGNLDI
                     FILDSASSAVLMENVQFRDGSYHLPLSVAQTGTLVDTLRAEVAAVANGRIKPFILCVE
                     PQLRKFIADICYNFSINIVVLSFAEIAENTNFNTEGIIRIEL"
     gene            16346..>16425
                     /locus_tag="ACHFOB_000800"
     CDS             16346..>16425
                     /locus_tag="ACHFOB_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799611.1"
                     /translation="MKIYHLSHTDLDGYACQFIVNFYFKNV"
BASE COUNT         6172 a         2114 c         2904 g         5235 t
ORIGIN      
        1 ggtaaaatca atcaatttct aaaaattatt ttaaaggacc ataatgagcg aggtgaacaa
       61 aaaagttcaa ggcggcgtag atgattatct tgaggaagaa gattttggac agcttttaga
      121 agcttttgat aaatcaagag aagaggctac aacagagggt gtgattgtag agatcaaaaa
      181 tgatgaagtt tatgtagata taggtaaaaa atctgaaggt attttagctc ttagcgaaat
      241 acaaggtgac aattctaagc tattgtttaa tgtaggcgat agtattaaag ttgctgttat
      301 gggttctcgt ggtggcagat ctttactttc tcataaaaaa gctttgagaa aagaaaaagt
      361 tattgaattt attaaaaact atcaagaaaa tcaagatgat atttttaccg taaaagtagt
      421 tggaaaaaat aaaggcggat tgatagttgt tgatgaaaat gatgttgaat ttttcttacc
      481 aaaatctcaa tatggcttta aagaaacaaa taatattata ggtaaaacgt ttaaagttaa
      541 aattattaaa atcgacaaag atgagcaaag tatcattgtt tctcgtaaaa aaactttaga
      601 tgatgagaga agaaaacgaa aagaattgat caataatata gcacaacaag aagatttaat
      661 tgaaggtatt gtaaaaaaaa ttaccactta tggtatgttt gtagatgtag gaggtgttga
      721 tggccttgtt cattacagcg aaatttctta caaaggacct gtaaatcctg gaacacttta
      781 taaagagggc gataaagttc cagttaaagt aataaagtat gataaagaac gcaaacattt
      841 atccttatct ataaaagcgg ctttacctga tccatggagc gagataaaag atactcttga
      901 tgtaggtgat accattaaag taatagtatc aaatatagaa ccttatggtg cttttgtaga
      961 tttaggaaat gatatagaag gatttttaca tatcagtgaa atttcttggg ataaaaatat
     1021 taaaaatcca aaagattata tcaacaaagg tcaagaaatt gatgttgaag taattgaaat
     1081 caatccaaat gaaagacgct taagagtatc tttaagaaat ttactttcta gaccttttga
     1141 tggatttatg aaatcttaca aaattgcaga tgtggttgaa ggagaaatta cctcagtaac
     1201 ttcttttggt gcatttgtta aacttggtgg tattgaaggt ttattgcata atgaagatgc
     1261 ttcttgggat agaaacgata aatgcaaaga caaattctct caaggggata aaatcaaggt
     1321 aaaaattatc aaaatagacg aagaaaacca aaaaatatca ttaagcacaa aagaattaag
     1381 cagttctcca gtgcaagaat atgccaaaat tcataaagtc ggcgatattg taaaaggcac
     1441 tatccgtgat attaaagatt ttggtgtttt tgtagagcta agtaaaaatg ttgatgcttt
     1501 aattcataaa gaagatataa gcacttctat gcttgaaaat ttaaaaattg gcgacgatat
     1561 tgaagctgct atagttttta ttgatgaaaa gaaaaataga attcgcctaa gtgttaaaaa
     1621 tcttgttaga atgaaagaaa gagaagttct taatgaaatc aataatgatg ataaagtgac
     1681 tttaggtgat atcattaaag atcagctagc ttaatgaaaa aatacattac aataagcatt
     1741 ttgagtattt tattactcat tttgcttgct gttgttttta cattgctttg gcaatttaaa
     1801 gctaatgtaa atttcattcc acaatttgct aaagatacaa atacacagcc aagcattcaa
     1861 acccaaaatc aagatctttc atggcaagaa gaattagcaa aatggcctac aagagatttt
     1921 accccagcag cagaaaaatt taccttatat tttgatgcgg atactagcga gcttaaggag
     1981 aaaaataaat attatcaact tatagttgga aaatatgata tttattctat gttttgctta
     2041 agacagactt taaattcttt taatgtgaag tattttcttc ttaaatcagg tgatagtcca
     2101 gaaatctttt tggatacagg taatgaaaaa cttatagatg atattatcaa agaattaaaa
     2161 aaatataaaa taaatacaga agtaaaggaa atttggttat gaaaaaaaag attatagtat
     2221 gtgatgctat tttggataaa ggtgtcgata ttctaagaaa agctgaagat attgagctta
     2281 tagaagctgc aaaagttcca aaagatgaac ttatgcaaat gctaagtgat gttgaagttg
     2341 ctattactag aagttctacg gatgtagatg taaatttctt aaatcatgcc aaaaaattaa
     2401 aagcgcttgt gcgtgctggg gtgggcgtag ataatgttga tattccagag tgttctaaaa
     2461 gaggagtgat tgtgatgaat gtcccaactg caaatactat tgccgcagtt gaactaacaa
     2521 tggcacatct tttaacatca gctagaagct ttgtcaatgc tcataatttt ttaaaaattg
     2581 aaagaaaatg ggaaagagaa aaatggtatg gcattgaatt gatgaacaaa acgctagggg
     2641 ttataggttt tggaaatata ggttcaagag tggctatccg cgctaaagca tttggtatga
     2701 aaattttagc ctatgatccg tatatttctg cttctaagat tacagattta gatatggagc
     2761 aagcaaaaaa tttagatgaa attttagaaa aaagtgattt tattaccatt cacacaccaa
     2821 aaaccaaaga aaccaatggt atgataggaa agcaagaaat tgcaaaaatg aaagatggaa
     2881 taagattaat aaattgtgct cgtggaggat tgtacacaga agaggcttta tatgaaggtt
     2941 taaaaagtgg taaaatagct tggcttggta tagacgtgtt cgataaagaa cctgcgacta
     3001 atcatcctct tttagacttt gaaaatattt cagttacttc tcacctagga gcaaatactt
     3061 tagaaagtca agacaatatc gcaagagaag cttgtgagca agcattaagc gcagcacgag
     3121 gcgtggctta tcctaatgcc ttaaatttac caattaaaac tgaagattta ccaccttttg
     3181 tagctcctta tatagaactt gtttctaaaa tggctttttt agctgttcaa attgataaaa
     3241 atcctataaa aagtattaaa ttagaggctg aaggaattat tggcgagtat gcaaattcta
     3301 tgctaacctt tgcagctgtt ggtgctttgg gtggaatttt aggagagaaa attaattatg
     3361 ttaatgcaga atttgtagcc aaagaaaaag gagttgagtt atcttgcgaa actcttccaa
     3421 atagtggtta taataataaa cttagcgtta aaattatcac cgaaaattca aatatcagtg
     3481 tttcaggaac agtatttaat gaaaatgaac aacgcatagt tggattaaat ggctttaaaa
     3541 ctgattttaa gccaaaaggg aaaatggtta tttttaaaaa caaagacata ccaggagtta
     3601 tagctaaaat cagttccgtt ttggcagcta aaaatatcaa catagctgat tttaggcttg
     3661 gtagagatgg ttttgggtat gctttggctg ttgttttgat tgatgaaaaa gttcaaaaag
     3721 aagtattaga tgaactaaaa caattagagg cgtgtgtatt tgtccaatat gttgaaattt
     3781 aaaattttaa ttatagaaga tgatatagat ttaaacgaac tgcttgtttt aaagttaaaa
     3841 tctagtggtt atgaagttat atctttagcg gatttttttg gagttgaaga tttgctcgat
     3901 aatgagcaaa tcgatctttt aatagtcgat agaaatttgc caagtgggga ttctttagaa
     3961 aaaattcaag atttaagaga gcaaggatac aaagaagcag ttatttttct tacagccaag
     4021 gctttgcatc aagatttgct cgaaggcttt gaaagtggtt gtgatgatta tgtttgcaaa
     4081 ccttttgatt ttaatgagct tttgcttcgc attaaagcaa ttttaaaacg ccataagaaa
     4141 gaagaagaaa agctatcttt tggtgatttt attttagatt tggctaatta tgaattcttt
     4201 tacaaaaatc aaaaattaga aatctcaaat cttgactatg agcttttaaa atgttttttt
     4261 gaaaatccaa ataccttgct tactagacaa tttttaagcg aaagtgtttg gaaagatgat
     4321 actacaagtg ataaaacaat caatatagct ctaacaagac ttagaaataa atttccaaaa
     4381 ctaaaagatc atattataag tgttaggggt gttggctata aattatgcta aaaactaaaa
     4441 atatttttat agtttttttt gttgtattgg ctttgatttt tgggtttatt ttttatactt
     4501 ttactaattc ttatcttaat ttcttgctta caaaacaata tgaacaaaaa atcaaaagcc
     4561 ttgatgatgt tttaaaattt tctctcttag agcatttaaa tgatgccaat attaaggatt
     4621 ttgctaaaga tactagggct gattttatta tcctaaacaa tgatatgaaa ataagttctg
     4681 taaaaaatcc tgattttttt tctaatctta aagaaggaga aattttaaat ttcaattcaa
     4741 aaaaaattct taccaaaagc tttatttaca aaggatataa atatattatt attgtttatc
     4801 ctcgtttttt agatttagaa cttttttgga taaaaatagc aatcggtttt ggagtgtgct
     4861 tgctgtttgt ttttattttg atgttgttgt taggtagaag aatagagaaa aattttaata
     4921 aaattttgga ttttttggat tctataagtg atcataaagt tgttatatta gaaaaaggaa
     4981 tgtttaaaga atttaattta ctaaatgaga aacttttaaa aactaaggat aaaattctaa
     5041 agaataccca aaaaaataaa aaacaaagcg ataaaatcac tttaaaaaat actcagcttg
     5101 ctagcgtgat ttctgctatt tcacatgagc ttaaaaatcc tttaagcgtg attgatctta
     5161 gcttagaaat attaaaagat gagaaattag aagataaaaa attaaaaaag gaattgctag
     5221 aaaaaatttc gcgtcaaagc attaaactta atgctttgac ccataagctt aattttgttt
     5281 ttaatcttaa tagtgaagcc ttgcaaatgc aagaatttga tctttttttt ctatgtgaaa
     5341 aaatcactaa aaacccaggc tttgaaagag ttgtattgca aggtaaaaac acgaaagtta
     5401 aggctgatga atttttaatc gagcaagtga ttataaattt gctttctaat gctttaaaat
     5461 atagtcaaaa agaagtcatt ttaacagcaa gagatcaaaa aataatagtg caagattttg
     5521 gaaaaggcat agaagaagat aaaataaaat tgattacaaa aaaattttat aaaattgatg
     5581 taaaaagcga taattctttt ggtttaggac tttttttagt aaagaaaatt ttaaatatac
     5641 ataaaagtta tcttgaaatt tctagcactt taggctatgg ttctagtttt agctttaaac
     5701 tcagtcaagg ataaaaaatg gctcttatag atttaattga agcttcaaaa aaatttggag
     5761 acaaaatagt tttaaatgaa gcaaatttta gtgcaaacga gggagaaaag attgctatta
     5821 taggcaaaaa tggagaagga aaatctactt ttttaaaaac gcttttaggc acacttcctt
     5881 tagatagcgg tagagtaata agacaaaatg gaaaaagcat agccatgctt tcacaaaccg
     5941 ttgattttaa tgcaaattta agtgtaaaag aagctatcaa gcaagagctt gcagaaattt
     6001 acaatgcctt agaagaatat gaaatactgc ataaaaaatt agaagaagaa cctaacaata
     6061 aagattatct taaaaaaata gatacactta tgactttgat tgatagtaaa gatgcttgga
     6121 atatagaatc taaaataata cgcgttttaa aagaatttag tttgcttgag tatgaaaatc
     6181 gcattatatc tactttaagt ggcggagaga tacgccgcgt tgggctttgc atacttttac
     6241 taaaaaatcc tgatatttta ttgcttgatg aaccaactaa tcatttagat gtatatatga
     6301 caagcttttt ggaagaattg ctaaaaaatt caaagatgtg tgtgattttt atttcccatg
     6361 atagatattt tattgacgct atagcacaca agtgtgtaga agtagagcag ggtaaactta
     6421 gtatttttaa aggcggatat gcaaactatt tagagaaaaa aacacaaatt ttacaaagcc
     6481 ttgctaagag ccatgaaact cttttaaaac aattaaaaag tgaagaagaa tggcttagaa
     6541 gaggggtaaa ggcaagactt aaaagaaatg aaggacgaaa agaacgcatt tttaaaatgc
     6601 gtgaagaagc gaaaaaaaat cctggagcaa ttaaacgttt aaaacttgaa atttcaagag
     6661 cggctttaaa ttttaatgga gaaaaaacga tcaatcgtaa aaaaatgctt tttgagctta
     6721 aaaatataag caaaaatata aacgataaaa atctttttaa agatttttca acgcgtattt
     6781 tacaaggtga acgcatagct atcgtaggaa gaaatggttg tgggaaatca acattgttaa
     6841 aaattcttct aggacaaatc aaacaagata gcggcgaaat aaaacgtgga gagcttaaga
     6901 taggatattt tgatcaggct agaagcttgg taaattctga taaaagcttg cttgaaattt
     6961 tttgtcccaa tggtggagat agggttgaag ttcgtggtaa aaatatgcat gtttatggat
     7021 atttgaaaaa ttttttattt cctaaggaat ttttagataa aagcgtagct cttttaagcg
     7081 gtggagagaa aaatcgcgtt gctttagcct tgctttttac taaagaatat gatgttttga
     7141 ttttagatga gccaactaat gatcttgata tagctacgat taatatatta gaagaatatt
     7201 tacttagttt tgaaggggct attttgctag tatcgcacga tagatacttt gttgataaaa
     7261 tcgcaacaaa actttatgct tttgagggag atggatatat aaatatttta cacactcttt
     7321 acactgaata tcttgaaaat gaaaaagaaa ttgaagaatt ggataatttt gctttagagc
     7381 ttcaaactca agagcaaaat aataaccaaa aagaaaaaag ctctaaaaaa ttaagctaca
     7441 aagaaaatga gatattaaaa aactatcctg aaaaaataga ttttttagag caaaagatag
     7501 ctaaattaaa tcaagattta tccgatccaa atgtatatca agaaataggt attaacaagc
     7561 tttatcaaga acttgaagta atgcaaaaag aacttgaaat tctagaaaat gagtattttt
     7621 tagtattaga gaaaagcgag aatttataat taaaaagatt ttatattttt ttactctatg
     7681 gagcgggaaa cgagattcga actcgcgacc ccaaccttgg caaggttgtg ctctacccct
     7741 gagctattcc cgcaaaaaat aagtggtgcc cgaggtcgga ctcgaaccga cacaaggttg
     7801 cccttaccag attttgagtc tggcgcgtct accagtttca ccactcgggc tcatttttaa
     7861 gatttaaagc taaaattata cttttttagg ctaaaaaata ctttaaaaat aaaaagtatt
     7921 ttcaaaaaga cgatataaaa ttatataatt taaatttttg gaacagttat tgcttttgtt
     7981 tattagcaat atttgaaaag attttaactt taatacttta gaggaaaaaa atgagaatta
     8041 caaataaact taacttcaca aatagtgtga ataattctat gggcggtcaa agtgctttat
     8101 atcagatatc tcaacaactt gcttcaggtt taaaaattca aaattcatat gaagatgcaa
     8161 gcacttatat agataatacg cgtcttgaat atgaaattaa aacattagag caagtaaaag
     8221 aatcaactag tagagctcaa gaaatgactc aaaatagcat gaaagcttta caagacatgg
     8281 ttaaacttct tgaagatttt aaagttaaag taactcaagc tgcaagcgat agcaattctc
     8341 aaacctcaag agaggctata gcaaaagaac tagaacgcat aaaagaaagt atagttcagc
     8401 ttgcaaatac cagtgttaat ggtcagtatc tttttgcagg ttctcaagtt gcaaacaaac
     8461 cttttgattc taacggaaat tattatggag ataaaaataa tattaatgta gtaactggag
     8521 ctggaactga aagcccgtac aatataccag gctgggattt attttttaaa gcggatggag
     8581 attataaaaa acaaataagc accaatgtta gttttacaga taatcgttgg gatcttactc
     8641 aaaatcctga taaaactaaa tatctcacag gagattctaa atggcaacag cttatcggac
     8701 aaggttatgt aaaagataat agcttagatg ctgacaaaga cttcgaatat gatgatagta
     8761 aactagattt tcctccaaca actctttatg ttcaaggaac caagcctgat ggaacaagtt
     8821 ttaaaagtgc tgtactcgtc aaacccgaag atactttaga agatgtaatg gaaaatattg
     8881 gagctcttta tggtaatact ccaaataata aagtagtaga agtaagtatg aatgatagtg
     8941 gtcaaattca aattacagat ctaaagcaag gtaataataa actcgatttt catgctgtag
     9001 ctttcacacc acaagctgat gataaaactg aattaaataa tattatccaa gcagcacaga
     9061 atgaaggtat tacaatggaa gatgttacaa acagggttat gactgctgca ctaggaaatc
     9121 ccaataatgg agatattaca aatttaaata atcctgtaac cattcaaatt aacggacaaa
     9181 actttgaaat tgatttaaaa caaactgatt ttatcaaaag taaaatgaca gatacagatg
     9241 gaaatgctgc taatggagct gattacgata atgtgtattt tgaaaaaaat ggcaatactg
     9301 tttatggtaa tgtttctcaa gttatcaaag gaagcaatgc ttatgccact gattcaacca
     9361 aacttagcga ggtaatggca ggagatagcc taaatggtac tactttaaat ttaaaagtca
     9421 attccaaagg tggaaattct tacgatgtta ctataaattt acaaacttca actgtaagct
     9481 atcctgatcc taataatcca ggtcaaacca taagctttcc tattatgcat actaatcctg
     9541 caactggaaa tagtggggtt gttacaggat caaatgatat tacttatggt caaattaatg
     9601 atattatagg tatgtttgct gcagataaaa ttcctacaac aaccatacaa gccaataatg
     9661 gtcaaattaa taatgcagat tatacccaaa tacaacaact catgaaagat tcacaagcta
     9721 ctgttgatgt aagtatggat tataaaggtc gtattagtgt tactgataaa ctttcttcag
     9781 gcactaatat agaaatttct cttagtgatt ctcaaagtgg ccaatttcca gcacctcctt
     9841 ttaccacaac ttctactgta caaaatggtc caaattttag ttttagcgcg aataattctt
     9901 taactataga tgagccaaat gtggatatta ttaaagattt agattcaatg attgatgctg
     9961 ttttaaaagg caatatgaga gcagactccg aaagtgaaaa ccctagaaat acaggtatgc
    10021 aaggagcttt agaaagactt gatcatttag cagatcatgt tagcaagctt aatacaacta
    10081 tgggagcata tcataatact atcgaaggtg ttaatacacg cacatccttt ttaagcgtta
    10141 atgtccaaag tataaaatca aatgtgattg atgtagatta tggtgaggca atgatgaatt
    10201 taatgcaagt tcaacttgca tatcaagctt ctcttaaagc tagtacaaca atttctcaac
    10261 ttagcttatt aaattatatg taaaattttt tatggtataa tttggctttg attttatttt
    10321 caaggaaaga atattaaaaa agaagccatt tttaccagct ccacgcttgt tattttttat
    10381 ctttgtcttt gtatgctagc acctggcatg ggagaatggg tttacaaggc taatttattt
    10441 ttatttggag aatttgggta ttattatcca ttttctttgc ttatattaaa ttatctctac
    10501 tataaaaaaa aatataaaat agaaaatttt aagcgtaggg agctttttgg tttttctttg
    10561 gccttttttt ctaccttgct tttattttct gtcttttata gagagtttgg gtatatttta
    10621 gaaattgtat atggattttt ttctataatc ttagggcgta cagggagtgg aatttttgct
    10681 cttttacttc tactattttc tttggtttta ttgtttccaa aatttgcaaa agaaatttta
    10741 aaaatagaat tagattttac ttatttatta aaagtagagc aagcttttaa atctttactt
    10801 atgcgtgtat ttggtggaga aaacgagaaa gaagatgtag gtaaatcaga acctatagct
    10861 ccaaaattaa atattttgca agatagtatt tatggaaatt tacaaataaa caaaaaaggg
    10921 gaaaccaata acttagaaca gataattaaa gatagcaata tcaatgcaag taaaaattca
    10981 attaccacgg ccaaggaaaa ttttgaaaaa ctaaaaaatc aaattttaga tgaaaccata
    11041 gagattgata aacaaagttt aaaagaatca agaagttttg ttcatgagca ttctcaacaa
    11101 gtgcgaaatt tcgcacaaaa ggctagtaaa atgagcatta gtcttgatga agattttaat
    11161 tttatttcag aagaagaggt agatatgatt cctgaacgtt ttttaaaacc taaaaaactt
    11221 gaagatataa agcaaataga tacaaataaa aatttagatg agccaagtta taaacgtaaa
    11281 aatattgaaa ttccagtttc taatcaagaa gttaaaccaa aaatttttac aaaagagctt
    11341 gaacttagag agaatttgat aaaaaaagaa aaactagaac aagaatacaa agcctatcaa
    11401 aatgaaattt tagaaaataa agtaaaacaa gaaattaaaa aattagaaga atatgatgcg
    11461 ataaattcaa gcgatattat agaagggaat aaatatagtt ttaatagccc aaaaacaatt
    11521 aaagcagaaa cagaagaatc agacaaaata aatgaaaata aaaatctaga taaagcagac
    11581 aatatctttg aatttgctcc cattgtagaa gagttaaatc atccttatat agaacctact
    11641 cctataaaaa atataaatga aatagttata gaagaaaaaa atacactcga ttttatccaa
    11701 aatacagaaa ctaaaatcga taatgaaaaa acaaatgatc aagaaattaa acttcaaaaa
    11761 gcagttttag ccaaagaaat tgctattaac caagctttat tgcgtgaaat agagcagggc
    11821 gaagtagaaa aaccaaaaga tttcaccttg ccgccattag attttttagc taatccaaaa
    11881 gaacacaaac aagaaatcaa tgaaagtgaa atagataaaa aaatttataa tcttcttgaa
    11941 aaattgcgtc gttttaaaat aggcggcgat gttataagca cttatgttgg tcctgtggta
    12001 actacttttg aatttcgtcc tagtgcagat gtgaaagtaa gtcgtatttt aaatttacaa
    12061 gatgatttaa ctatggcttt aatggcaaaa tcaatccgta ttcaagctcc aataccagga
    12121 aaagatgttg taggtataga agttccaaat gatgaaattc aaaccattta tttaagagaa
    12181 attttacaaa gtgaagtttt taaaaacgct aaaagtcctt taaccatagc tttaggtaaa
    12241 gatatagtag gcaatgcttt tgtaaccgat cttaaaaaac ttccgcattt actcatcgca
    12301 ggaacgacag gtagtggtaa aagtgtgggg ataaattcta tgcttttaag tcttttatat
    12361 cgcaactctc caaaaacctt gcgtttgatg atgatagatc ctaagatgct tgaatttagc
    12421 atttataatg acattcctca tcttttaact cctgttatca cagatccaaa aaaagcagtc
    12481 aatgcgcttt caaatatggt agctgaaatg gaaagacgct atcgcttaat ggctgatgca
    12541 aaaaccaaaa atatagaaaa ttacaatgaa aaaatgaaag aattaggcgg agaagaactt
    12601 ccttttattg tagtaattat cgatgaactt gctgatttga tgatgactgc gggtaaagat
    12661 gtagaatttt atataggaag acttgcgcaa atggcaagag caagtggaat ccacttgatt
    12721 gtagctacac aacgaccttc tgttgatgtt gtaacaggac taattaaagc gaatttacca
    12781 agtagaattt cttataaagt agggcaaaaa attgactcta aagttatttt agatgctatg
    12841 ggtgctgaaa gtttacttgg aagaggggat tgtttattta ctcctcctgg aacaagctct
    12901 atagtgcgtt tgcatgcgcc ttttgcaagc gaatttgaaa tagaaaaaat cgtggatttt
    12961 ctaaaggatc aacaaagcgt agaatatgat gaaagctttt taaaggatca gcaaagcgta
    13021 ggtgttacaa caaatgaaag ctttgatggg gaagtagatg agctttatga agaagctaaa
    13081 agagtaatct tagaagatgg aaaaacaagc atttcttatt tacaacgccg tttaaaaatc
    13141 ggctataacc gctctgcaaa tattattgaa caacttacgc aaaacgggat tttaagcgaa
    13201 cctgatgcca aaggacaaag ggaaatcttg taagattttt cttgtgtttt tgatatataa
    13261 aactgattac aaaagaagaa atttaaaagg caaaagcccc gtaaaaaggg cttaaaaatt
    13321 atttatctct aagatttaat tcagtaatta acttactata agaattataa tcttttcttt
    13381 taagataaga taaaagtctt tttctttgac ctacaagttt tagaagtcct aatcttgatg
    13441 aaaagtcttt tttgtagatt tttaaatgtt ctgtaagttc tgcaattctt gcagttaaaa
    13501 gagctacttg aacttctgtt gaaccagtat cacctggttt tttagcgaat ttcgcaacta
    13561 tttctgcttt tttggccgaa tccaaagcca tgatagacct cctgattggt aaaataataa
    13621 aattaaagaa ctgtaatttt atcttaaaaa gcaaaaaata aactgaattt atctttttta
    13681 gaaggttttg tcaaaattta agtctttttc taagaattat ttattataat tacagctatt
    13741 tctgtagtta taacaaggag aatctgtgct atttaccaaa gctagcgaat acgctttact
    13801 ttctttaatt tatatttctc aaaaagaaac acctcaagat gtagattctt tagctttaga
    13861 gcttgatatt cctaaaagtt ttttagctaa aattttacaa actttagcta aagatggctt
    13921 gttaaaatcc tttaaagggg caaaaggtgg ttttgtttta atcaaagaac caagtcaata
    13981 tactataaaa gaaattgtta atagtgctga aaaaaaggat atcagtgtat ttgaatgcag
    14041 tggtggcact tgtccaaata ataaagaaga aaattgcacc ttaatgccta tgttagtaaa
    14101 tttacaaaat aaagtagatg aatttttaga ttctattact ttagaagata ttatgaaaaa
    14161 taatggcaaa aaataaaata gtcgatttag tttttccttt cttggggcct ttaatcgctc
    14221 ctgttttaaa agctaaaagc ttgactattg ttggtttttt agtttgtatt ttagctatta
    14281 ttatagttcc tttaccaagt cctattttgg actttttctt ggctttaagt atagctttat
    14341 cggtattaat tattttaatt tctatttata tacccaaacc gacagattta acaacttttc
    14401 caactttaat cttgattatc actttattta ggctttcatt aaatatagct accacaagga
    14461 tgattttaag cgaagggcaa aacggccctg aagctgtgag tgagattata gcagcatttg
    14521 gagaatttgt tgttggtgga aatatggtca ttggcgtgat tgtattttgt attttagtat
    14581 tgattaattt catggttgta acaaaaggta gtacaagggt ttctgaagta caagcaagat
    14641 ttacacttga tgcgatgccg ggtaaacaaa tggctattga tgcggattta aatgcaggac
    14701 ttattgatga acaaaccgct agagcaagac gtcaagaagt tattgctgag gcaaacttct
    14761 atggtgcaat ggatggttct tctaaattta tcaaaggaga tgctgttgca ggaattatca
    14821 taactattat aaatatcata ggtggttttt taataggatc ttttcagcac gatatggctt
    14881 taagcgatgc tgcatctact tatactattt taaccatagg tgatggactt gtatctcaaa
    14941 ttccagggct tattacttct actgcaaccg ctataattat cactcgtgca agcaaagatg
    15001 aggaaaattt tgcagaagga actttaactc aacttttaag cgaatatcgc acgcttttaa
    15061 tagtaggttt tgtacttttt atctttgcgt tagtgcctgg tttgccaact ttatccttgg
    15121 gctttatggc tttagtattt ttaagccttg gctatcttac caagcaggtt aaggaaggta
    15181 aaattgatat aactacagtt aaaaaaagca aaccaagtgc cgcagttgca tctcaaagtg
    15241 gagcaggtgg gacaacggca gcgcctgcta agaaaagcga agaagaaatt ctcaaagaag
    15301 aagagcacaa gattaacgat atactcaaag ttgaaatttt agaacttgaa cttggatacg
    15361 gacttattaa gcttgctgaa aacgaactta cagaaagaat tcgctcaatg agaagaagta
    15421 ttgctgaaag tttaggattt ttaatgccaa aaataagaat aagagataat ttaagactta
    15481 aaccaaatga gtatagtttt aaactcaagg gcgtgtctat agcaagtgct gaaatttatc
    15541 cggataaata tttagccatg gatagtggtt ttatcacaga agagatagaa gggattgcta
    15601 caaaagaacc cgcttttaac tctgatgcac tttggattga tgcgaattta aaagatgaag
    15661 caacattaaa tggctatata gtaatagatc ctgcaagtgt tatttcaaca catatgagcg
    15721 aacttatcaa agcgcacgca agcgaacttc tcacacgcca agaggtacaa aatcttcttg
    15781 ataaggttaa aaatgattat ccaatcatcg tagaaggtgc tttaggtgtt gcacctgtaa
    15841 gtcttattca aaaaattctc aaagacttgc ttaagcatca cataccaatt aaagatatgc
    15901 ttactatttt agaatctgta agcgatatag cagaagtaag caagagtttt gatatgatta
    15961 ttgaacatgt aagggcgtcc ttagctagga tgattacaaa tatgtattta gatgataaag
    16021 gaaatttgga tatttttatc ttagactctg ctagttctgc ggttttaatg gaaaatgtac
    16081 aatttagaga tggaagttat cacttgcctt taagtgtagc tcaaacaggt actttagtag
    16141 atactctaag ggctgaagtt gccgcagtag caaatggtcg tatcaagcct tttatacttt
    16201 gcgttgaacc gcagcttaga aaattcattg ctgatatttg ttataatttt agcattaata
    16261 tagtagtgtt aagttttgca gaaattgcag aaaatacaaa ttttaatacc gagggtatta
    16321 ttaggataga actttaagga atataatgaa aatttatcat ctttcacata cagatcttga
    16381 tggctatgct tgtcaattta tagtaaattt ttattttaaa aatgt
//
LOCUS       DAZBIH010000031        16255 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.031, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000031 DAZBIH010000000
VERSION     DAZBIH010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 16255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.031"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(33..644)
                     /locus_tag="ACHFOB_000801"
     CDS             complement(33..644)
                     /locus_tag="ACHFOB_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002834455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pimeloyl-ACP methyl esterase BioG family
                     protein"
                     /protein_id="HFN5799612.1"
                     /translation="MKISNLIQNENSQELILVFGGFASHPSHFAHLKSDKNVVLVYDY
                     ENLDFKFDLKSFSKITLIAFSMGVCVASRVLKDIEFSQKIAINGTPFGIDKLKGIHPA
                     IFAKQIKKFDLTAFKKSLFKERKNEAKNFIFKDEKDLKTELEKLFEFASKECNENFIW
                     DKIYSSNNDEIFPQNALKNTFSKLIFLNEPHFAFFHFKTWDEI"
     gene            complement(641..1783)
                     /locus_tag="ACHFOB_000802"
     CDS             complement(641..1783)
                     /locus_tag="ACHFOB_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HFN5799613.1"
                     /translation="MSLENILEALEKNHNLRKLTSLKHEGNFVFKEGKKLLNLAGNDY
                     LNLSSCKSLKDEFLDNVKEQDLFFSSSSSRSLSGNFTIYEELESFLKSKFKEKEILHF
                     NSGYHLNISCIAALVSIPNTLFLADKFIHASMIDGLKLGGAKFFRFHHNDMNHLENLI
                     QKHYDHYENIIILSEALFSMDGDFSDFNTLIAFKEKYPKIKLYIDEAHSVGCFDEEGL
                     GLVKALNLEEKVDFIVFTFGKALASMGACMICNNLYKSFFINKARAFIYSTALPPINI
                     AWTKFIFEKMSELKEKREKLQIIGNFFKNQLIEKNHQILGDAYIISLVLGENQKTIEL
                     AKKLETNGIFAPAIKEPTVPKNTARIRFSLHAGLSKEDLKKVIELL"
     gene            1850..3133
                     /locus_tag="ACHFOB_000803"
     CDS             1850..3133
                     /locus_tag="ACHFOB_000803"
                     /EC_number="2.6.1.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004015 -
                     adenosylmethionine-8-amino-7-oxononanoate transaminase
                     activity [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylmethionine--8-amino-7-oxononanoate
                     transaminase"
                     /protein_id="HFN5799614.1"
                     /translation="MQNEILKKLDLEHIWHPCTQMKDHENLPLIPIKRAKGVWLYDFD
                     DKAYMDCVSSWWVNLFGHCNEKIANAIKKQVDELEHVILAGFTHEPIIKLSARLCEKV
                     GRNFNKCFYADNGSSAIEVALKMSFHYHLNKGVKKSKFLSLSNSYHGETLGALSVGDV
                     ALYKDTYKPLLLECLSTPVPQSKDYTQELEILKDILEKNASEICAFILEPLVQCAGNM
                     HMYEAGFIDEAIKLCHKFGVQVIFDEIAVGFGRTGTLFALHQCKQSPDFICLSKGITG
                     GFMPLSVVLTRDEIYNAFYDTYESQKAFLHSHSYTGNTLACAAANAVLDIFEDENILV
                     KNQILSEFIKKEFSRLEKFDFLGNFRTCGMISAFDILSTKYKRVGLFVFQKALEKGLL
                     LRPLANTIYFMPPYIITKEQIVYVLESLEQIFKEF"
     gene            complement(3120..3725)
                     /locus_tag="ACHFOB_000804"
     CDS             complement(3120..3725)
                     /locus_tag="ACHFOB_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dethiobiotin synthase"
                     /protein_id="HFN5799615.1"
                     /translation="MQIYVSGIHTDVGKTHFSAAFCANFNYDYFKLIQAGTPTDSEFI
                     AKFSPKTKIFKEGIFLQTPASPHLGKIKEKLDYKALDIILPKSKNLLIELAGGLFSPM
                     DENYTMIDFVNIFKHPTILVAKYYLGSINHILLSIEALKQRNINLLALVMMGKKDILQ
                     DDFIKNYAKIPIINLDFFDENSILNKDFKEQMQEILQLKIP"
     gene            complement(3735..4049)
                     /locus_tag="ACHFOB_000805"
     CDS             complement(3735..4049)
                     /locus_tag="ACHFOB_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN5799616.1"
                     /translation="MEWFYLFLATACEIFGVVIMKELISTKNKLYLLALIVCFGFSFT
                     FLSLSMQNIAMSVAYAIWTGAGTAGGVMIGVLFYKESKSFLKLFLIAVIITCTAGLKF
                     LS"
     gene            complement(4053..4391)
                     /locus_tag="ACHFOB_000806"
     CDS             complement(4053..4391)
                     /locus_tag="ACHFOB_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN5799617.1"
                     /translation="MNEKFNINIAWFLIILGGIIECFWVSGLKYSTEIWQYILTAIGV
                     CISFTCFLKACERLEVSITYSVFVGIGTIGVVLNEMFIFNEAVSIIKLVLIAILLLSI
                     IALKWVSKEA"
     gene            4525..5061
                     /locus_tag="ACHFOB_000807"
     CDS             4525..5061
                     /locus_tag="ACHFOB_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HFN5799618.1"
                     /translation="MLEGIVRESIGRKAAKALKRDGYLIANIYGKGLENINAAFKVNE
                     FIKEVRKKTTLIFDVKVGSQTLSVVVVDYQKDSVTAELKHVDLKVAQKGVISKYMVPV
                     KITGTAIGLKNKGVLIQSKRRLKVKCAAENLPNFFELDVSKLDVGDALLVRDIVVPAG
                     VTMIDADRVAVVGVEKAR"
     gene            5058..5603
                     /gene="pth"
                     /locus_tag="ACHFOB_000808"
     CDS             5058..5603
                     /gene="pth"
                     /locus_tag="ACHFOB_000808"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004045 - aminoacyl-tRNA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HFN5799619.1"
                     /translation="MILVVGLGNIGVEYENTRHNVGFMLIDLLLKESNFTNLTNSKFK
                     GELFKIGSSLLLLKPSTYMNNSGLSVKAVNDFYKCERMIVIHDDIDINLGALRFKKGG
                     SSGGHNGLKSIDTLCGNDYERVRIGVGKGENVISHVLGKFKSEEEITLSKVLEHTKKA
                     LLELIENDDLSAISSKYSLKA"
     gene            5605..6663
                     /locus_tag="ACHFOB_000809"
     CDS             5605..6663
                     /locus_tag="ACHFOB_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LptF/LptG family permease"
                     /protein_id="HFN5799620.1"
                     /translation="MWIFFRFISGIYLKNFFIIFFSLLGFYCGIDLLLNFKDLPKAAN
                     LDLLYVMFLSFSAVPYVLPISLIFALVVSLISMIRANEFVSLYALGLSRNYVILFPFL
                     WALFFCCIYIGLNFTSFAYANDYKRNILKNGTIMNQSGEVFLKFNNNFVYISKINNGQ
                     NSAQNIKIFNINDLNLSSFVSAKNAHFEGESWILRDGNITLLPKNYELANDGLKIQDF
                     SELKSLEGFKPKIIEGVASNSDYSISDALESFELFKAQNVNTDTLKINLYKFVFTPFF
                     APFLMLIMYYFFPVIARFFNLAIVTFVTFVVTLMIWGVLFLLTRLSENSVIASEIGIV
                     VPIIILGCLSAYMYYKHR"
     gene            6707..7915
                     /gene="lysA"
                     /locus_tag="ACHFOB_000810"
     CDS             6707..7915
                     /gene="lysA"
                     /locus_tag="ACHFOB_000810"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008836 - diaminopimelate decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HFN5799621.1"
                     /translation="MDYKQLKQEFNTPFYIYNFDFIKERFLNLKEAFKARKSQIFYAV
                     KANSNLSLLQMLANLDSGFDCVSIGEVKRALKAGAKAYKIIFSGVGKTKEELRQALEY
                     DILYINLESEAEMMLLESVAKELNLKARISIRVNPNVDAKTHPYISTGLNENKFGVEI
                     DIARKMYLYAKNSSFLEPVGVHFHIGSQLLDISPIHEAAGIVAKLVRELKALQIDLKF
                     FDIGGGLGVAYEKDECESDLYDYAQGILAQLHGLDLTIGMEPGRYLVAKSGEFVCSVL
                     YEKQNKTKRFVVVDGAMNDLIRPSLYEAYHEIILPYNQAQESLCDVVGGICESGDFFA
                     KARSLPSTQSGDIMVIKNTGAYGFSMSSNYNTRNKVCELALEEGQVRLIRQRENFENQ
                     IALEEKFLKA"
     gene            7917..8684
                     /locus_tag="ACHFOB_000811"
     CDS             7917..8684
                     /locus_tag="ACHFOB_000811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIA family hydrolase"
                     /protein_id="HFN5799622.1"
                     /translation="MFFLDVQGTLISDHDKSLIHGAKELIDFLNAKNLPYVIITNNTK
                     KLDFLEKLQQKGLAIKENAYIDPFSVLKHLLKPCKVAAFGADEFVKSLENLGFELDFV
                     NPSAVLVASYDDFKFVDFASMIELARREVRFIAMHETSIYKKDGRPYPGVGSIMAMLK
                     NAIDFEYEVVGKPSIAFYKEALNLIRKQNSKIDFEDIKIISDDFRGDLLKAKELGMKT
                     LLVLSGKISDTKGLDTDLLDGVYPSVFEFLKELKCQI"
     gene            8672..9745
                     /gene="pheA"
                     /locus_tag="ACHFOB_000812"
     CDS             8672..9745
                     /gene="pheA"
                     /locus_tag="ACHFOB_000812"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004664 - prephenate dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0009094 - L-phenylalanine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HFN5799623.1"
                     /translation="MPNLEEFRNKIDAVDDKILELLNERMTYVKSIGELKQSSGGAIY
                     RPERERAIINRLKNANLGLLDQNAIEAIYQEIFAVSRNLEMPQTIAYLGPEGTYTHQA
                     ARSRFGAMSRYIALANIEDVFKELSNKEAKYGVVPIENNTEGAVGITLDCLGKYNELK
                     IFGEIYMDIHHSFVGINENLKEIKRIYSHPQGYNQCRKFLESHELSAIEFVPSKSTAN
                     AAYLASQDKYAAAICSKIAAKLYNVPVLFDKIEDNAANKTRFLILSDIKNPKMPNCKT
                     SILAHTAHKPGGLSFLLEQFKKENINLTKLESRPVKSKEFLHSFYIDFEGHIDDENVK
                     KALKDIQEIVWLGSYLSGEKDEI"
     gene            9735..10829
                     /gene="hisC"
                     /locus_tag="ACHFOB_000813"
     CDS             9735..10829
                     /gene="hisC"
                     /locus_tag="ACHFOB_000813"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HFN5799624.1"
                     /translation="MKFNEFLNHLSNYEPGKDIEVIAKEYGVKEVIKLASNENPFGTP
                     PKAIECLRQNANKAHLYPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHAKL
                     NSKNAFLQAGVTFAMYEIYAKQCGAKCYKTQSITHDLNEFKKLYEAHKDEIKLIFLCL
                     PNNPLGECLDASEVTKFIKGVDEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNV
                     LYLGTFSKLYGLGGLRIGYGIANANIISAFYKLRAPFNVSNLALKAAVAAINDDEFAK
                     KTLENNFSQMELYKEFAKKYDIKIIDSYTNFITYFFDEKNSTDLSEKLLKKGIIIRNL
                     KSYGLNAIRITIGTSYENEKFFTEFDKILR"
     gene            10881..12563
                     /gene="fliF"
                     /locus_tag="ACHFOB_000814"
     CDS             10881..12563
                     /gene="fliF"
                     /locus_tag="ACHFOB_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009431 - bacterial-type flagellum basal
                     body, MS ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body MS-ring/collar protein
                     FliF"
                     /protein_id="HFN5799625.1"
                     /translation="MDFKNMLHQIGQLYQNLTRKQRIVIAASIVVVVGFLVFLALFRG
                     SGSNANNGYAVLVENVSPSSSAAIVAKLEQNNIPYKLESENKILVPQDQVYRQRMFIA
                     SEGLIKDSRVGFEAFDTQAFGATNEEQKVKYQRAIEGELARTIETLEPIRSAVVHIAF
                     PKDSVFTERQIPPTASVVVNVREGLKLTRKQIDGIKNIVSAAVPKLTKENVKISDQSG
                     VPLDEQEAYEDDLVRAQIKFKSDQEKALEDKIIENLAPFAGGMDKVKVSVNIDFDFSK
                     QESQSEIYDPNPIVRSEQTLNEERTGRKDPEIQGVPGAVSNIGPVEGLDNKGQIDTYK
                     KNQVTTNNELSKTITNTKKQFATVLRTSAAVTIDGKYQDVVDENGDVKSEYVPLTKEE
                     LASVESIVKNTINFSATRGDSVVVQNLPFHRESIRVESKVKTFYNRFVEPFIPPVKYF
                     IAAILLFIFYKKVIAPFTQKMLEDVAAQEEMQQGPNAVLDDAEDALEKFNAARKKVEE
                     QLGFGDNFNEDSIQYEVLLEKLRGLVSDKGEEIAALLQNLIQNDSEFGEKDM"
     gene            12563..13591
                     /gene="fliG"
                     /locus_tag="ACHFOB_000815"
     CDS             12563..13591
                     /gene="fliG"
                     /locus_tag="ACHFOB_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HFN5799626.1"
                     /translation="MIKLSEEQKMVYDDLSMPEKVAIFLIQLGEDATTSVFSHMEIDV
                     ITEISRYIAMAKNVDRSVATAVLEEFYTLLQSNQYIKSGGLEYAKEILFRTFGPEIAN
                     KILEKLTKSMENNQNFAYLAQIKPQQLADFITKEHPQTIALILAHMDSIHAAETLEYF
                     SDELRAEVVIRMANLGDISPSIIKRVSAVLESKLESLTSYKVEVGGPRAVAEVLNRLG
                     QKASKSTITYIEQSDERLAETIKELMFTFDDIQKLSTQAIREILKVADKRDLMIGLKG
                     ASEELKQKFLANMSTRASEAFLEEMGFLGAVRVKDVEDAQRKVVEVVQKLAEQGLVQT
                     GDADEMIE"
     gene            13599..14429
                     /gene="fliH"
                     /locus_tag="ACHFOB_000816"
     CDS             13599..14429
                     /gene="fliH"
                     /locus_tag="ACHFOB_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HFN5799627.1"
                     /translation="MVNRSNVISGGASDQHVVEGYRFKVISEFDNHTGEKKHTQTPDE
                     ENTNISLNDEKPVEENQVIASTQAVMETQIPTFQPSFVEDLLKKTDEMSSNIIKLQMQ
                     IESQENEFNNRLNSELENAKEKFTKEGYEKAKEEFQKELSDFKDKYLKSIAKLDNACE
                     NLENFIEKNEKELADTAIDIAKEVILKELELNSSKIAYALAKDLIGELKGASAIELKV
                     NAEDYEYLKEQFDQNAHIKISLDDAISKGSVVIISDAGNIESNLNSRLTKIKKMVNNE
                     "
     gene            14422..>16255
                     /gene="dxs"
                     /locus_tag="ACHFOB_000817"
     CDS             14422..>16255
                     /gene="dxs"
                     /locus_tag="ACHFOB_000817"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008661 - 1-deoxy-D-xylulose-5-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009240 - isopentenyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HFN5799628.1"
                     /translation="MSKKFAHTQEELEKLSLKELENLAASMREKIIQVVSKNGGHLSS
                     NLGAVELSIAMHLVFDAKKDPFIFDVSHQSYTHKLLSGKEEIFDTLRQINGLSGYTKP
                     SEGDYFVAGHSSTSISLAVGACKAIALKGEKRIPVALIGDGALSAGMAYEALNELGDS
                     KFPCVILLNDNEMSISKPIGAISKYLSQAMATQFYQSFKKRIAKMLDILPDSATYMAK
                     RFEESFKLITPGLLFEELGLEYIGPIDGHNLGEIISALKQAKAMQKPCVIHTQTIKGK
                     GYALAEGKHAKWHGVGAFDIDSGESVKKSDTKKSATEIFSKNLLDLASKYENIVGVTA
                     AMPSGTGLDKLIEKYPNRFWDVAIAEQHAVTSMAAMAKEGFKPFIAIYSTFLQRAYDQ
                     VIHDCAIMNLNVVFAMDRAGIVGEDGETHQGVFDLSFLAPLPNFTLLAPRDEQMMQNI
                     MEYAYLHQGPIAFRYPRGSFILDKEFNPCEIKLGKAQWLVKNSSEIAFLGYGQGVAKA
                     WQVLRALQEMNNNANLIDLIFAKPLDEELLCELAKKSKIWFIFSENVKIGGIESLINN
                     FLQKYDLHVKVVSFEYEDKFIEHGKTSEVEKNLEKDVNSLLTKVL"
BASE COUNT         5745 a         2129 c         2968 g         5413 t
ORIGIN      
        1 gtgtttttga taatcttttg cttttaaaaa attcaaattt catcccaagt tttaaaatga
       61 aaaaaagcaa aatgtggctc atttaggaaa ataagctttg aaaaagtgtt ttttaaagca
      121 ttttgaggaa aaatttcatc attattgctt gagtaaattt tgtcccaaat aaagttttca
      181 ttacactctt ttgaggcaaa ttcgaaaagt ttttcaagct cggtttttaa atctttttca
      241 tctttaaaaa taaagttttt tgcttcattt ttgcgctctt taaataaaga ttttttaaaa
      301 gccgtgagat caaatttttt aatttgctta gcaaaaattg caggatgaat tccttttaat
      361 ttatctatgc caaaaggagt gccattgata gctatttttt gcgaaaactc tatatctttt
      421 aaaactctac ttgctacgca aactcccata gaaaaagcta tgagagtgat tttagaaaaa
      481 gactttaaat caaatttaaa gtctaaattt tcataatcat aaaccaaaac tacattttta
      541 tcgcttttta aatgtgcaaa atggctagga tgtgaagcaa aaccgccaaa tactaagata
      601 agttcttgtg agttttcatt ttgaattaaa ttgcttattt tcataaaagt tctatcactt
      661 tctttaaatc ttctttacta agtcctgcat gcaaagaaaa acgaattcta gctgtatttt
      721 taggcaccgt aggttctttt atagcgggtg caaaaatgcc atttgtttca agtttttttg
      781 ctaattctat agtcttttga ttttctccca aaaccaagga gatgatgtaa gcatcgccta
      841 aaatttgatg atttttttct atgagttgat ttttaaaaaa gttgcctatg atttgtaatt
      901 tttctctttt ttcttttagc tcgctcattt tttcaaaaat aaattttgtc caagctatat
      961 tgataggagg cagcgctgta gaataaataa aagctctagc tttgttgata aaaaagcttt
     1021 tataaagatt attacaaatc atgcaagcac ccatagaagc aagagccttg ccaaaggtaa
     1081 aaactataaa atcaaccttt tcttccaaat ttaaagcttt aacaagtccc aagccctcct
     1141 catcaaagca acccacgctg tgcgcttcat cgatataaag tttgatttta gggtattttt
     1201 ctttaaaggc gatgagtgta ttaaaatcag aaaaatcacc atccatgcta aataatgctt
     1261 cgcttaaaat gatgatattt tcataatgat cataatgttt ttgaattaaa ttttctaaat
     1321 gattcatatc gttatgatga aagcgaaaaa attttgctcc gccaagtttt agtccatcaa
     1381 tcatacttgc atggatgaat ttatctgcta aaaaaagtgt atttggaatg ctcacaagtg
     1441 cagctataca agagatatta agatgataac cgctgttaaa atgtaagatt tctttttctt
     1501 taaatttgga ttttaaaaag ctttctaatt cctcataaat tgtaaaattt ccactcaagc
     1561 tccttgaact tgagcttgaa aaaaataagt cttgttcttt gacattatct aaaaattcat
     1621 cttttaaaga tttgcaagag cttaaattta aataatcatt ccccgctaaa tttaaaagct
     1681 ttttaccctc tttaaaaaca aaatttcctt catgtttgag gcttgtaagt tttctaagat
     1741 tgtgattttt ttcaagggct tctaagatat tttcaaggct catttttttc ctaaaattca
     1801 gaaatttaaa gtattatttt gccaaaatat atttaaaaaa gaagttataa tgcaaaatga
     1861 aattttaaaa aaactcgatt tagagcatat ttggcaccct tgtacgcaaa tgaaagatca
     1921 tgaaaatttg ccactcattc ctataaaaag agctaaagga gtgtggcttt atgattttga
     1981 tgataaggct tatatggact gtgtgagctc gtggtgggta aatctttttg ggcattgtaa
     2041 tgaaaaaatc gcaaatgcca ttaaaaaaca agttgatgag ctagagcatg tgattttagc
     2101 aggttttaca catgagccca tcatcaagct ttctgcaaga ctttgcgaaa aagtaggcag
     2161 gaattttaac aaatgttttt acgcagataa tggttcaagc gctattgaag tcgcacttaa
     2221 gatgagcttt cattatcatt taaataaggg agtgaaaaaa agtaaatttt tatctttaag
     2281 taattcttat catggtgaaa ccttaggagc cttaagtgta ggagatgtag cactttataa
     2341 agatacttat aagcctttac ttttagagtg tttaagcacg cctgtgccac aaagtaaaga
     2401 ttacactcaa gagcttgaaa ttttaaaaga tattttagaa aaaaatgcaa gtgaaatttg
     2461 tgcttttata cttgaaccct tggtgcaatg tgcaggaaat atgcatatgt atgaagcagg
     2521 gtttattgat gaggccataa agctttgcca taaatttgga gtgcaagtga tttttgatga
     2581 aattgcagtg ggctttggac gcacaggaac tttgtttgcc ttacatcaat gcaaacaaag
     2641 ccccgatttt atctgccttt caaaagggat aacgggtgga tttatgccac tttctgtagt
     2701 gcttacaaga gatgaaattt ataatgcttt ttatgatact tatgaaagcc aaaaggcttt
     2761 tttacattct catagctata cgggaaatac cttagcttgc gcggcagcaa atgcggtttt
     2821 agatatcttt gaggatgaaa atattttagt aaaaaatcaa attttaagcg agtttatcaa
     2881 aaaagaattt tcaagacttg aaaaatttga ctttttgggt aattttagaa cttgcgggat
     2941 gatcagtgct tttgatattt taagcaccaa gtataaacgc gtaggacttt ttgtatttca
     3001 aaaagcctta gaaaaaggtt tgcttttaag acctttagca aatacgattt attttatgcc
     3061 tccttacatc atcacaaaag aacaaatcgt ttatgtacta gagagtttag agcagatttt
     3121 taaggaattt taagttgtaa aatttcttgc atttgctctt taaaatcttt atttaaaatg
     3181 ctattttcat caaaaaaatc aagattgatt ataggaattt ttgcataatt ttttataaaa
     3241 tcatcttgta agatatcttt tttacccatc attacaaggg ccaaaagatt gatatttctt
     3301 tgctttaaag cttcaatgct aagcaagata tgattaatgc ttccaagata gtattttgct
     3361 accaaaatcg tagggtgttt gaaaatattc acaaaatcaa tcatagtgta attttcatcc
     3421 ataggagaaa aaagcccacc cgcaagctca ataagtaggt ttttgctttt tggtaaaatg
     3481 atatctaagg ctttataatc aagcttttct ttgatttttc caagatgagg agaagctgga
     3541 gtttgcaaaa aaataccttc tttaaaaatc tttgtttttg ggctaaattt tgcaataaac
     3601 tcgctatctg ttggagttcc tgcttgaatg agtttaaaat aatcatagtt aaaattcgca
     3661 caaaaagctg cgctaaaatg tgtttttcct acatcagtat gtattccact tacataaatt
     3721 tgcacaaaaa atcctcaaga aagaaatttt aaacccgctg tacaagtaat aatcacagcg
     3781 attaaaaaaa gtttcaaaaa acttttactt tctttataaa aaagcactcc tatcattacc
     3841 ccaccagcgg ttccagctcc tgtccatata gcataagcaa cgctcatagc gatattttgc
     3901 atacttaagc ttaaaaaagt aaaagaaaat ccaaaacaca ctatcaaagc taaaaggtaa
     3961 agcttgtttt tagtacttat aagttctttc atgatcacca cgccaaaaat ttcacaggca
     4021 gtagctaaaa acaaataaaa ccattccata gtttaagctt ccttgcttac ccatttaagg
     4081 gctataatac ttaaaagtaa aattgctata agcacaagtt taattataga aacagcttcg
     4141 ttaaaaataa acatttcatt taaaaccacc ccaatagtgc caatgcctac aaaaacacta
     4201 taagtaatac ttacttcaag tctttcacaa gcttttaaaa agcaagtaaa agaaatacaa
     4261 accccaatgg ctgttaaaat atactgccaa atttctgtag aatatttaag tccacttacc
     4321 caaaagcatt ctataattcc acctaagatt attaaaaacc aagctatatt aatattgaat
     4381 ttttcattca catgaagcct taaattaaca taatatttgt aaaacaaatt atatcttaaa
     4441 gaaattaaaa gaagctataa atttactttt ccataagcca aaattagata taatcaaagc
     4501 tcatttttta agaaaggaca aaagatgtta gaaggcatcg ttagagagag tatcggtaga
     4561 aaagctgcta aagctttaaa aagagatggt tatctaatcg caaacatcta tggaaaagga
     4621 ttagaaaaca tcaatgccgc ttttaaagta aatgagttta ttaaggaagt tcgtaaaaaa
     4681 actactttaa tttttgatgt aaaagtaggt tctcaaactt taagcgttgt agttgtagat
     4741 tatcaaaaag attctgtaac tgcagaactt aaacatgtgg atttaaaagt tgcgcaaaaa
     4801 ggtgtgattt ctaaatacat ggttccagtt aaaatcacag gaacagctat aggtcttaaa
     4861 aataaaggtg ttttaatcca atcaaaaaga agattaaaag taaaatgtgc agctgaaaat
     4921 ttaccaaatt tcttcgaact tgatgtaagt aaacttgatg tgggtgatgc tttacttgtt
     4981 cgtgatattg tagttcctgc gggagtaact atgattgatg ctgatagagt agcggttgta
     5041 ggtgtagaaa aagctagatg attttagtcg tagggcttgg caatataggc gtagagtatg
     5101 aaaatacccg tcataatgtc ggttttatgc taattgactt acttttaaaa gaaagcaatt
     5161 ttacaaatct tacaaactct aaatttaaag gagagctttt taaaataggt tcttctttgc
     5221 ttcttcttaa acctagtact tatatgaata attcaggact tagcgtaaaa gcagtgaatg
     5281 atttttataa atgcgaaaga atgatagtta tccatgatga tatagatata aatttaggag
     5341 ccttgcgctt taaaaaaggc ggttcaagtg gtggacataa tgggcttaaa agcatagata
     5401 ctttatgtgg aaatgactat gaaagagtgc gtataggagt gggaaagggt gaaaatgtga
     5461 tttcccatgt tttaggtaaa tttaaatccg aagaagaaat aactttaagc aaagttttag
     5521 agcatacaaa aaaagctttg cttgagctta ttgaaaatga tgatttgtct gctatatcat
     5581 ccaaatacag cctaaaggct taagatgtgg atattttttc gttttatttc agggatttat
     5641 ttaaaaaatt tttttattat atttttttct ttacttggtt tttattgcgg tattgattta
     5701 ctcttaaatt ttaaagatct accaaaagcc gcaaatcttg atttgcttta tgttatgttt
     5761 ttatcttttt cggcagtgcc ttatgtatta cccatttctt tgatttttgc tttggtagtt
     5821 tctttgattt ctatgatcag agcaaatgaa tttgtaagtc tttatgcgtt aggactgagt
     5881 agaaattatg ttattttatt tcctttttta tgggctttat ttttttgttg tatttatata
     5941 ggattgaatt ttacttcttt tgcttatgca aatgattata agagaaatat tttaaaaaat
     6001 ggcactatta tgaatcaaag tggagaagtg tttttgaaat ttaacaataa ttttgtttat
     6061 atttcaaaga taaacaatgg acaaaatagt gctcaaaata taaaaatttt taatattaat
     6121 gatttaaatt taagctcttt tgtaagtgct aaaaatgccc attttgaagg tgaaagctgg
     6181 attttgcgag atggtaatat tacattatta cctaaaaatt atgaacttgc taatgatggt
     6241 ttaaagatac aagatttctc cgagcttaaa tcacttgagg gttttaaacc aaagattata
     6301 gaaggggttg ctagtaatag tgattattca atatctgatg cacttgaaag ttttgagctt
     6361 tttaaggcac aaaatgtcaa tacagatact cttaaaatca atctttataa atttgttttt
     6421 actccttttt ttgcaccatt tttaatgctt attatgtatt atttttttcc tgtaatagca
     6481 agatttttta atcttgctat tgtaactttt gtaacttttg tagtgacttt gatgatttgg
     6541 ggagtcttgt ttttgcttac tagattaagc gaaaatagtg tgattgcaag tgaaattggc
     6601 attgtagtgc ctattataat tttgggttgt ttaagtgctt atatgtatta taagcatcga
     6661 taaattaagc tttgtgtagt aaaattataa aaattaaagg ttaaatatgg attataaaca
     6721 attaaaacaa gaatttaata ccccttttta tatttacaat tttgatttca taaaagagcg
     6781 ttttttaaat ctcaaagagg cttttaaggc tagaaaatct caaatttttt acgctgtaaa
     6841 agccaattca aatttaagtt tgttgcaaat gcttgcaaat ttagatagtg gatttgattg
     6901 tgtgagtata ggcgaggtaa agcgtgcctt aaaagcagga gcaaaagctt ataagattat
     6961 ttttagtgga gtaggaaaaa ccaaagaaga gttaagacaa gctttagaat atgatatttt
     7021 atatattaac cttgaaagcg aagctgaaat gatgctttta gaaagtgtgg ctaaagaact
     7081 taatctaaag gcaagaatca gtattcgtgt taatccaaat gttgatgcaa aaactcatcc
     7141 ttatatttct acaggattaa atgaaaataa atttggtgtc gaaattgata tagcaagaaa
     7201 aatgtatctt tatgcaaaaa attcatcttt tttagagcct gttggagtgc attttcatat
     7261 aggttcgcaa cttttagata tttctcccat tcatgaagca gcaggcatcg ttgcaaaact
     7321 tgtaagagag ttaaaagcct tgcaaatcga tcttaaattt tttgatatag gcggtggttt
     7381 gggtgtggct tatgaaaaag atgagtgtga atctgatctt tatgattatg cacaaggtat
     7441 attagcacaa cttcatgggc ttgatttaac tataggaatg gagcctggaa ggtatctagt
     7501 tgctaaaagt ggagaatttg tttgttcagt gctttatgaa aaacaaaata aaaccaagcg
     7561 ttttgttgta gtagatggag cgatgaatga tcttatacgc ccaagtttat acgaggctta
     7621 tcatgaaata atcttacctt ataatcaagc tcaagagagt ttatgtgatg ttgtaggtgg
     7681 aatttgtgag agtggagact tttttgctaa agcaaggtct ttacctagca ctcaaagtgg
     7741 cgatataatg gttattaaaa atactggagc ttatggtttt agtatgagta gtaactacaa
     7801 tactcgtaat aaagtttgcg aattagccct tgaagaagga caggtaagat tgatccgtca
     7861 aagagaaaat tttgaaaatc aaatcgcttt agaagagaaa tttttaaagg cttaaaatgt
     7921 tttttttaga tgttcaaggg actttaattt ctgatcatga taagagttta atccatggcg
     7981 ctaaagaatt gatcgatttt ttaaatgcaa aaaatcttcc ttatgttatc attactaaca
     8041 atacaaaaaa acttgatttt ttagaaaaat tacagcaaaa aggattggct ataaaagaaa
     8101 atgcttatat tgatcctttt agcgttttaa aacacctttt aaaaccttgt aaagttgcgg
     8161 cttttggtgc agatgagttt gtaaaaagtc ttgaaaatct tggttttgaa ctcgattttg
     8221 taaatcctag tgctgtgctt gtagctagtt atgatgattt taaatttgta gattttgcta
     8281 gtatgataga attggctaga agagaagtta gatttatagc tatgcacgaa actagcattt
     8341 ataaaaaaga tggtaggcct tatcctggtg taggtagcat tatggctatg cttaaaaatg
     8401 ctattgattt tgaatacgag gttgtgggta agcctagcat tgctttttat aaagaagctt
     8461 taaatttgat aagaaaacaa aattcaaaaa tcgattttga agatattaaa atcattagtg
     8521 atgattttag aggagacttg cttaaggcaa aagaacttgg catgaaaacc ttgctggttt
     8581 taagcggaaa gataagcgac acaaaagggc ttgatacgga tttgcttgat ggagtttatc
     8641 ctagtgtttt tgagttttta aaggagctaa aatgccaaat ttagaagaat ttagaaataa
     8701 aatcgatgcg gttgatgata aaattttaga acttttaaat gaaagaatga cttatgttaa
     8761 aagtataggc gagcttaaac aaagtagtgg gggagctatt tatcgtcctg agcgtgaaag
     8821 agccattatc aatcgtttaa aaaatgcaaa tttaggactt ttagatcaaa atgccataga
     8881 ggcaatttat caagaaattt ttgcagtttc aagaaattta gaaatgcctc aaactatagc
     8941 ttatttaggg cctgagggaa cttatactca tcaagcagca agaagtcgtt ttggtgcgat
     9001 gagtcgttat atagccttgg ctaatatcga agatgttttt aaagagttaa gcaacaaaga
     9061 agcaaaatac ggtgttgtgc ctatagaaaa taataccgaa ggtgcagtag gtattacttt
     9121 agattgtcta ggtaagtata atgagcttaa aatttttggt gaaatttata tggatattca
     9181 tcattctttt gtgggaatta atgaaaattt aaaagaaatc aaacgcattt attcgcatcc
     9241 gcaaggttat aatcaatgtc gtaaattttt agaaagtcat gaacttagcg ctatagaatt
     9301 tgttccttca aaatctacgg ctaatgcggc ttatttagct tcgcaagata aatatgcggc
     9361 agcaatttgc tctaaaatag cggctaagct ttataatgtg cctgtgcttt ttgataaaat
     9421 agaagataat gcagccaata aaacaagatt tttaatttta agcgatatta aaaatcctaa
     9481 aatgccaaat tgtaaaactt ctattttagc acacacagca cataaacctg gtgggcttag
     9541 ctttttatta gagcagttta aaaaagaaaa tatcaatctt actaagcttg aatctcgtcc
     9601 tgtaaaatca aaagaatttt tacacagttt ttacatagat tttgaagggc atattgatga
     9661 tgaaaatgta aaaaaagctt taaaagatat acaagagatt gtttggcttg gatcttattt
     9721 atcaggagaa aaagatgaaa tttaatgaat ttttaaatca tttaagcaat tatgaacccg
     9781 gaaaagatat agaagttatt gccaaagaat atggcgttaa agaagtgata aaattagcaa
     9841 gtaatgaaaa tccttttggt acgccaccaa aagccataga atgcttaaga caaaatgcaa
     9901 acaaagctca tctttaccct gatgatagta tgatagaact taaaagcaca ttggctcaaa
     9961 aatacaaagt tcaaaatgaa aatatcatca tcggtgcagg tagtgatcaa gtgattgaat
    10021 ttgctataca tgctaagtta aattctaaaa atgctttttt acaagctgga gttacctttg
    10081 ctatgtatga aatttatgcc aaacaatgcg gtgcaaagtg ttataaaact caaagcatta
    10141 ctcatgattt aaatgagttt aaaaagcttt atgaagcaca caaagatgaa attaaactca
    10201 ttttcttatg cttgccaaat aatcctttag gcgagtgttt ggatgcaagt gaagtgacca
    10261 agtttattaa aggtgtggat gaggattgtt tagttgtgat tgatgcagct tataatgaat
    10321 ttgcaagttt taaagatagc aaaaaacatt tagaaccttg tgaattgatt aaagaatttg
    10381 acaatgtact ttatttggga actttttcta aactttatgg attaggaggc ttacgcattg
    10441 gttatggtat agctaatgct aatattatta gtgcatttta caagcttcgt gctcctttta
    10501 atgtgagcaa tcttgcttta aaagcagcag ttgcagcaat aaatgatgat gaatttgcta
    10561 aaaaaacttt agagaataat ttttctcaaa tggagcttta taaagaattt gctaaaaaat
    10621 atgatattaa aatcattgat agttatacaa atttcatcac ttattttttt gatgaaaaaa
    10681 atagtacaga tttgtctgaa aaattgctta aaaagggtat aataataaga aatttaaaaa
    10741 gctatggttt aaatgctata cgcattacta taggaacatc ttatgaaaat gaaaaatttt
    10801 ttacagaatt tgataagatt ttaagataga taaatcaaat aaaaatatgt aaaattcgct
    10861 aaactaaggg atgagaatta atggatttta aaaatatgct tcatcaaatt gggcaacttt
    10921 atcaaaattt aactcgcaag cagcgtatag tgattgctgc atctattgta gtagtggttg
    10981 ggtttttggt ttttttagct ttatttcgtg gaagtggtag taatgcaaat aatggatatg
    11041 cagttttagt tgaaaatgta agcccaagtt cttctgctgc aattgtagct aaacttgaac
    11101 aaaataatat tccctataaa ttagaaagtg aaaataaaat tttagttcca caagatcagg
    11161 tttatcgtca aagaatgttt attgcaagcg aaggtcttat aaaagatagt cgcgtgggtt
    11221 ttgaagcttt tgatactcaa gcttttggag ctacaaatga agagcaaaaa gtaaaatacc
    11281 aaagagccat agaaggtgaa cttgcaagaa ctattgagac tttagaacct attcgtagtg
    11341 ctgttgtaca tatagcattt cctaaagata gtgtttttac tgaaaggcaa attccgccta
    11401 cagcttcagt tgttgttaat gttcgcgaag gcttaaagct tactagaaaa caaattgatg
    11461 gtataaaaaa tattgtttca gcggcagttc caaaacttac taaagaaaat gttaagatta
    11521 gtgatcaaag tggcgtgcct ttagatgagc aagaagcata tgaagatgac ttggttcgtg
    11581 cgcaaattaa atttaaaagt gatcaagaaa aagctttaga agataagatt atagaaaatt
    11641 tagctccttt tgcaggtggt atggataaag taaaagtgag tgtaaatata gattttgatt
    11701 tttccaagca agaatctcaa agtgaaattt atgatccaaa tcctatagtg cgtagtgagc
    11761 aaactttaaa cgaggaaaga acaggtagaa aagatccaga aattcagggt gttccaggtg
    11821 ctgtttctaa tataggtcct gttgaaggac ttgacaataa aggtcaaatt gacacttata
    11881 aaaaaaatca agttactaca aacaatgaac tttctaaaac tatcacaaat acaaaaaaac
    11941 aatttgcaac agttttacgc acttcagcag ctgtcactat agatggaaaa tatcaagatg
    12001 tggttgatga aaatggggat gtgaaaagcg aatatgttcc attgactaaa gaagagcttg
    12061 caagtgttga gagtatagtt aaaaatacta ttaattttag cgctactaga ggtgatagtg
    12121 ttgtagtgca aaatttacca tttcatcgtg agtcgattag agttgagagt aaagttaaaa
    12181 ctttttacaa tcgttttgtt gagccattta ttccaccagt taagtatttt attgcagcga
    12241 ttttactttt tattttttac aaaaaagtca ttgctccatt tactcaaaaa atgcttgaag
    12301 atgtcgcagc gcaagaagaa atgcagcaag gtccaaatgc tgttttagat gatgctgaag
    12361 atgctttgga aaaatttaat gcagcaagga aaaaagttga agaacaactt ggttttgggg
    12421 ataattttaa tgaagattct attcaatatg aggttttact tgaaaaattg cgtggtttag
    12481 taagtgataa aggcgaggaa attgcagcac ttttacaaaa cttaattcaa aatgatagtg
    12541 aatttggcga aaaggatatg tgatgataaa gctaagtgaa gaacaaaaaa tggtctatga
    12601 tgatttatcg atgcctgaga aggtagcgat atttcttata caacttggcg aagatgcaac
    12661 aacttctgtg ttttcacata tggaaattga tgtaattaca gaaatttcac gttatattgc
    12721 tatggctaaa aatgttgata gatccgtagc tactgcagtt ttagaagaat tttacactct
    12781 gcttcaatca aatcaatata ttaaaagtgg tggtttggaa tatgctaaag aaatactttt
    12841 tcgtactttt gggccagaga ttgcaaataa aattcttgaa aaactcacta aaagtatgga
    12901 gaataatcaa aattttgctt atttggcgca aattaaacca cagcaacttg cagactttat
    12961 taccaaagag cacccacaaa ccatcgctct tattttggca cacatggatt ctattcatgc
    13021 ggcagaaact ttagagtatt ttagtgatga attaagggct gaggtggtta taagaatggc
    13081 aaatcttggc gatatttctc caagtattat taaaagagtt tctgcagtgc tagaaagcaa
    13141 gcttgaaagt cttacctctt ataaggttga agtgggcggc ccaagagcag tagcagaagt
    13201 gcttaatcgt ttgggtcaaa aagcaagcaa atcaaccatt acttatattg aacaaagtga
    13261 tgaacgctta gcagagacta ttaaagagct tatgtttact ttcgatgata tacaaaaact
    13321 tagcactcag gctataagag aaattttaaa agtagccgat aagcgtgatt taatgatagg
    13381 tttaaaaggt gcaagtgaag agttaaagca aaaattctta gccaatatgt ctacgcgtgc
    13441 aagcgaagct tttcttgaag aaatgggttt tttgggtgct gtgcgtgtta aagatgttga
    13501 agatgcacaa agaaaagttg ttgaagtggt gcaaaaactt gcagaacaag gtcttgttca
    13561 aacaggcgat gcggatgaaa tgatagagta ggtgagagat ggttaatcgt agcaatgtaa
    13621 tttctggtgg ggcttctgat cagcatgttg ttgaaggata tcgttttaaa gttatttcag
    13681 aatttgataa tcatacaggt gaaaaaaaac atactcaaac tccagatgaa gaaaatacta
    13741 atatatcttt aaatgacgaa aaaccagtcg aagaaaatca agtcattgcc tctacacaag
    13801 ctgttatgga aactcaaatt ccaacatttc aaccaagctt tgttgaagat ttacttaaaa
    13861 aaacagatga aatgtcaagc aatattatta aacttcaaat gcaaatagaa agccaagaga
    13921 atgaatttaa taaccgctta aattcagaac ttgaaaatgc taaagaaaaa tttaccaaag
    13981 agggttatga gaaagcaaaa gaagaatttc aaaaggaatt gagtgatttt aaagataagt
    14041 atttaaaaag tatagccaaa cttgataatg cttgcgaaaa tcttgaaaat ttcatagaaa
    14101 aaaatgagaa agaattagca gatactgcta tagatatcgc taaagaagta atcttaaaag
    14161 aacttgaact aaattcaagt aagatagctt atgctttggc taaagattta atcggcgagc
    14221 ttaagggtgc tagtgcaatt gagcttaagg ttaatgcaga ggattatgag tatttaaaag
    14281 agcaatttga tcagaatgct catattaaaa taagtcttga tgatgcaatt agcaaaggaa
    14341 gtgttgttat tataagtgac gcaggcaata tagaatccaa tcttaactct cgtctaacta
    14401 aaattaaaaa aatggtgaat aatgagtaaa aaatttgccc atactcaaga agagttagaa
    14461 aagctaagtt taaaagaatt agaaaattta gcagcatcta tgcgtgaaaa aatcatacaa
    14521 gttgtgagta aaaatggtgg gcatttaagt tcaaatttgg gtgctgtaga acttagtata
    14581 gcaatgcatt tggtttttga tgcaaaaaaa gatcctttta tttttgatgt gtcgcatcag
    14641 tcttatacac acaagctttt aagcggaaaa gaagaaatat ttgatacttt aagacaaatc
    14701 aatggtttaa gtggttatac aaaacctagc gagggagatt attttgtagc agggcattct
    14761 agcacctcta tttctttggc agtaggtgct tgtaaggcca ttgctttaaa aggtgaaaag
    14821 cgtattcctg ttgctttgat tggagatggt gctttaagtg cgggtatggc ctatgaggct
    14881 ttaaatgaat tgggtgattc taaatttcct tgcgtaatac ttttaaatga taatgaaatg
    14941 agtatttcaa aaccaattgg agcaatttca aagtatcttt ctcaggctat ggcaacgcag
    15001 ttttatcaaa gttttaaaaa gcgtattgct aaaatgttgg atatattgcc tgatagtgct
    15061 acttatatgg ccaagcgttt tgaagagagt tttaaactta ttactcctgg gcttttgttt
    15121 gaagaattag ggcttgaata tatagggcct attgatggac ataatttagg tgaaattatt
    15181 tctgcattaa aacaagcaaa agctatgcaa aagccttgtg tgatacatac tcaaaccata
    15241 aagggtaaag gctatgcttt agccgaagga aaacatgcta aatggcacgg ggtgggagct
    15301 tttgatatag atagtggaga gagtgttaaa aaaagtgata ctaaaaaatc tgctactgaa
    15361 attttttcta agaatttgct tgatttagcc tcaaaatatg aaaatattgt tggggttacg
    15421 gcggctatgc caagtggaac aggtcttgat aagcttatag aaaaatatcc aaaccgtttt
    15481 tgggatgtgg ctattgcaga acagcatgca gtaacttcta tggccgctat ggcaaaagaa
    15541 ggatttaaac cttttattgc aatatatagc acttttttgc agcgtgctta tgatcaagtg
    15601 atccatgatt gtgcgattat gaatttaaat gtggtttttg ctatggatag ggcagggata
    15661 gtaggcgaag atggggaaac gcatcaaggt gtttttgatc ttagtttttt agctcctttg
    15721 ccaaatttca ctcttttagc tccaagagat gaacaaatga tgcaaaatat aatggagtat
    15781 gcttatttac atcaaggacc tattgctttt cgttatccta gagggagttt tattttggat
    15841 aaagaattta atccttgtga gataaaactt ggtaaggcgc aatggcttgt aaaaaatagt
    15901 agtgaaattg cttttttagg ttatggacaa ggtgtggcaa aagcgtggca agtcttaaga
    15961 gccttgcaag aaatgaataa taatgctaat ttgattgatt taatttttgc taaaccttta
    16021 gatgaagagc ttttgtgtga gcttgctaaa aaaagtaaaa tttggtttat ttttagtgaa
    16081 aatgttaaaa ttggcggtat agaaagttta attaataatt ttttacaaaa atatgatttg
    16141 catgtaaaag ttgttagctt tgaatatgaa gacaaattta ttgaacatgg aaaaacaagt
    16201 gaggtggaaa aaaatctaga aaaagatgtc aatagtttgt tgacgaaagt tttaa
//
LOCUS       DAZBIH010000032        15426 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.032, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000032 DAZBIH010000000
VERSION     DAZBIH010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 15426)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15426)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15426
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.032"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..147
                     /locus_tag="ACHFOB_000818"
     CDS             <1..147
                     /locus_tag="ACHFOB_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799629.1"
                     /translation="KEYLSFLKYEKNEEILQQSFRNLNGIFSNKNFTAYDLGFSTQDN
                     DEPF"
     gene            229..501
                     /locus_tag="ACHFOB_000819"
     CDS             229..501
                     /locus_tag="ACHFOB_000819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HFN5799630.1"
                     /translation="MMPFSDEELINPVKASLEKSLPMLERDGGGLEFLGIKNGIVYVH
                     LIGACKGCASSGTTLKYGLERQLKIDIHPEITIINLNGGADEFAKL"
     gene            488..1039
                     /locus_tag="ACHFOB_000820"
     CDS             488..1039
                     /locus_tag="ACHFOB_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase"
                     /protein_id="HFN5799631.1"
                     /translation="MQNYKKLGIEHFYKKDFKTAKMYFSMAYEKRKNKRLLNFICLCD
                     LALKSPKEASLLFDFYIEHYKISSIDKDLEEILSTIEFKKQENKQENEFEDGHALNYQ
                     DFLKSEEELGFQKSFENIINSTKLVIDNRDDFLDFLEKLLDNGYKDMTLNYIENVMPH
                     FWANDRFIKLQEKLIGFKSEIKT"
     gene            1023..2306
                     /gene="murE"
                     /locus_tag="ACHFOB_000821"
     CDS             1023..2306
                     /gene="murE"
                     /locus_tag="ACHFOB_000821"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016874 - ligase activity [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HFN5799632.1"
                     /translation="MKLKLENSFITDSTLECEKECFFLQTTQNAKFHARALEKGAKII
                     DVNECKKLLKIDEKIQIIGITGTNGKTTTAAAIYSILLDLGYKCGLCGTRGAFINDEQ
                     IDEKSLTTSPILKTLEYLQIATQKKCDFFIMEVSSHALVQNRIEGLNFVAKIFTNITQ
                     DHLDFHGTFENYKKAKELFFTDESLKFINKDALAIKFNVRNAFTYGIENPALYQIKAY
                     SLEEGISAIVTNKNQTFHIDSPLLGLFNLYNLLVASACVNELIKPDLKDLEKAISGFG
                     GVCGRVEQVAKGVIVDFAHTPDGIEKVLDTLKNKQLIVVFGAGGDRDKTKRPLMGKIV
                     EHFAKIAIITSDNPRSEEPKTIMEEILSGFAKKEKVLMIEDRKEAIKKALELKENDDL
                     VVILGKGDETTQEIKGIKYPFSDKVVVNEILKNQG"
     gene            2310..2621
                     /locus_tag="ACHFOB_000822"
     CDS             2310..2621
                     /locus_tag="ACHFOB_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HFN5799633.1"
                     /translation="MFENMDFSKMGELLNQVQEKAKNIELELANREFSAKSGAGLVKV
                     SANGKGEIIDVSIDDSLLEDKESLQILLISAINDVLAMVAQNRSSMANDVLGGFGGMK
                     L"
     gene            2618..3712
                     /locus_tag="ACHFOB_000823"
     CDS             2618..3712
                     /locus_tag="ACHFOB_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HFN5799634.1"
                     /translation="MKKILIICMLFTLSFGIERPKFEDFLAGYERNKASMLNYEGMPA
                     FALSENLLAVLKQPNTKLNKYVKYDPFLNLYLVRTDFSLIPTPMGDEEKLTRNDWVGI
                     WDPNKPYIGHIKYLAQNIDEKDQLDFNSKIGLLGTPCCEMMGIALNNSSFIGNRYLKH
                     FMKYNDVYWGDIGVDFVVRENKIYVNNVRKNPQFLINDQVISVDGLPANDLRKLNEKI
                     LFADRGSTLYFQVLRDNMDLNISTEVFAKDLSKFNLPDSKPKPKITNFTSNLGLTVNT
                     SLVVTKIDPKSKASNAGFMVGDKILRVNNIILNNFKELQNILSAGNDFSILIERKSTK
                     LPLSNFNNELGGNANSGGDGKFQFFIRLTK"
     gene            3709..4554
                     /gene="ispA"
                     /locus_tag="ACHFOB_000824"
     CDS             3709..4554
                     /gene="ispA"
                     /locus_tag="ACHFOB_000824"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004659 - prenyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008299 - isoprenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HFN5799635.1"
                     /translation="MNLKELFIHHLEKNLPKVESFHPFFNEALALMLKAGGKHFRAQL
                     LLSVVQSNKPELLNQALDVALALEFIHTYSLIHDDLPAMDNADFRRGIPTLHKSYDET
                     TAILVGDALNTEAFLVLSHAHLKDEIKIKLIKTLAFNAGLNGMVIGQAIDCFFEDKKL
                     SLNELEFLHTHKTARLIAAALKMGCEICELNNEESNQIYKLGLKLGLIFQINDDIIDV
                     TTSQEQSGKPTNNDIHKNSFVNLLGLEQAIKTKENLLSECEQDLEKLNKKLAQMIQNL
                     IIQYL"
     gene            4564..6462
                     /gene="tkt"
                     /locus_tag="ACHFOB_000825"
     CDS             4564..6462
                     /gene="tkt"
                     /locus_tag="ACHFOB_000825"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004802 - transketolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HFN5799636.1"
                     /translation="MDIQILQEQANTLRFLSADMVQKANSGHPGAPLGLADILSVLSY
                     HLKHNPKNPTWLNRDRLVFSGGHASALLYSFLHLSGYDLSLEDLKNFRQLHSKTPGHP
                     EISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEGIS
                     YEACSLAGLHKLDNFILIYDSNNISIEGDVGLAFNENVKMRFEAQGFEVLSINGHDYE
                     EINKALEQAKKSTKPCLIIAKTTIAKGAGELEGSHKSHGAPLGEEVIKKAKEQAGFDP
                     NISFHIPQASKIRFESAVELGDLEEAKWKDKLEKSGKKELLERLLNPDFSKIAYPDFK
                     GKDFATRDSNGEILNVLAKNLEGFLGGSADLGPSNKTELHGMGDFIEGKNIHFGIREH
                     AMAAINNAFARYGIFLPFSATFFIFSEYLKPAARIAALMKIKHFFIFTHDSIGVGEDG
                     PTHQPIEQLSTFRAMPNFLTFRPADGVENVKAWQIALNADIPSTFVLSRQKLKALNEP
                     IFGDVKNGAYLLKESKDAKFTLLASGSEVWLCLESANELEKQGFACNVVSMPCFELFE
                     KQDKAYQERLLKGEVIGVEAAHSNELYKFCHKVYGVESFGESGKDKDVFEHFGFSVSK
                     LVNFILSK"
     gene            6464..7573
                     /gene="iamB"
                     /locus_tag="ACHFOB_000826"
     CDS             6464..7573
                     /gene="iamB"
                     /locus_tag="ACHFOB_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MlaE family lipid ABC transporter permease
                     subunit"
                     /protein_id="HFN5799637.1"
                     /translation="MNANFKFQNNTLFIFGIWDKTSIYKLKIKDFLALIQSKEVIFDF
                     KDLKAIDTAGVRFFLALENDLKDKNIKITKEGLNSSFQTLFELCEKNYQRLSKTKKSH
                     KNFSEYFIDLGKLSLELLKILRKFINFTGAFFTSLFLCLKNPKNFRFIAFLYHIENSA
                     FKALPIVILTALLVGVVLAYQAAYQLAQFGANIFIVDLMGISATRELAPLIAAIVIAG
                     RSASSYTAQIGVMKITDEIAAMNTMGFRSFEFIIIPRVMALVVAMPLIVAISDAISII
                     GGMMVAKLNLDISFAEFLRRFREAVDIKHIFIGLAKAPIFGFLIGLIACFRGFEVKNT
                     TQSIGIYTTKSVVNAIFWVIAFDALFSVILTSAGI"
     gene            7574..8296
                     /gene="iamA"
                     /locus_tag="ACHFOB_000827"
     CDS             7574..8296
                     /gene="iamA"
                     /locus_tag="ACHFOB_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799638.1"
                     /translation="MVIKAQNIITKFGEKIVHDGVSFEIKKNEIFGILGGSGSGKSVL
                     LKQMLMLEHFDGGEYEILGYKLKNINEEDALTLRKKWGVVFQFAALFSFFNVYENIAI
                     PLKEYTHLDEDSIQELVLMKLKMVGLNESVLKQFPSELSGGMQKRVAIARALALDSKL
                     LFLDEPTSGLDPYSSREFDDLVLELKKSFDLNIILVTHDKESMKNLLDRFIILENKKV
                     GFCGTYEELRLQNERLFKRFME"
     gene            8299..9189
                     /locus_tag="ACHFOB_000828"
     CDS             8299..9189
                     /locus_tag="ACHFOB_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015914 - phospholipid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MlaD family protein"
                     /protein_id="HFN5799639.1"
                     /translation="MENRANYFFVGLFVFGVFFASLGFILWLGGYSKEESFKYYEIHT
                     QESVAGLGIKAPVRLLGVEVGSVEEISIYNQDELGVNIRIKVKNNTPIKEDTFATLQL
                     QGITGLKFVQLQGGSKNSKDLVSIQGKLPVIPFKESFLATIDRQSEHIFSLVKTADDK
                     SKELLSEKNLKNLEILLQNLAELSANLNANSKNLSLNLSNASLKIGKMANNISLSAQN
                     FNSSLKDIKESTMILKKFIKKADEKLNTYDDIKASLMQNLELFKRVLIESNILIENLQ
                     NSPADLIFKETKPKLGPGEK"
     gene            9189..9788
                     /locus_tag="ACHFOB_000829"
     CDS             9189..9788
                     /locus_tag="ACHFOB_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-type transport auxiliary lipoprotein family
                     protein"
                     /protein_id="HFN5799640.1"
                     /translation="MLKQLFYILTFIFMLCGCSLRHETINKNENIILKDEGIDSNIFF
                     KKTGKILKIRNANAPLYLNSRAIVYIDNGFSNKYAHYFWGDLPSNLYSFLILSKFEQS
                     NIFTTLLSSTSSLNADYALESRINSFEQILNNNENYAQISISVNFINLENNQIIAHKI
                     FNTKEKIEKKDIRSTYNAFQKALNKIGNEIVFWVNSNLS"
     gene            9844..10344
                     /locus_tag="ACHFOB_000830"
     CDS             9844..10344
                     /locus_tag="ACHFOB_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar FLiS export co-chaperone"
                     /protein_id="HFN5799641.1"
                     /translation="MKSDLDIFKKHLGEIQGVNEFKANQICSQINDANDFIGALQVLD
                     MSLKKIEKSILERIDENSDDMQKRTLDATASQLIQNCSFMGTALFGNIFNVYVGKKLF
                     EFEIANPLLILQTSNYEGVLAYIQDKRDEIKIILSELATAITMGETMDNAGIYNSTMD
                     FKNLFK"
     gene            complement(10716..11474)
                     /gene="map"
                     /locus_tag="ACHFOB_000831"
     CDS             complement(10716..11474)
                     /gene="map"
                     /locus_tag="ACHFOB_000831"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070006 - metalloaminopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HFN5799642.1"
                     /translation="MIELKKPDEIEKLRIANQIVAKTLNFLENEIKIGMSLKQIDKMA
                     EDYILSLGAKPSFKGLYGFPGAICTSLNQVCIHGIPDDKIIKEGDILGLDVGSLIDGY
                     YGDAARTIAIGEVSPTDKALISCAKDALYHAIDIIRDGMRFKELSAALGEFIHARGFV
                     PLRGYCGHGIGRKPHGEPEILNYLEKGASAKSGPKIKNGMVFCIEPMICQKDGTPKHY
                     NGKWDAGSIDGLNAAHYEHCVAVINGRAEILSMI"
     gene            complement(11484..12227)
                     /gene="murI"
                     /locus_tag="ACHFOB_000832"
     CDS             complement(11484..12227)
                     /gene="murI"
                     /locus_tag="ACHFOB_000832"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002870107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HFN5799643.1"
                     /translation="MKIGVFDSGVGGLSVLKSLYEARLFDEIIYYGDTARVPYGVKDK
                     DTIIKFCLEALEFFEQFQIDMLIIACNTASAYALDALRTKAHFPVYGVIDAGVEATIK
                     ALHDKNKEILVIATKATIKSEEYQKRLLSQGYTNINALATGLFVPMVEEGIFEGDFLQ
                     SAMEYYFKNITTPDALILACTHFPLLGCSLSKYFGDKTKLIHSGDAIVEFLKERENID
                     LKNHKARLHFYASSDVESLKNTAKIWLNL"
     gene            complement(12229..12690)
                     /locus_tag="ACHFOB_000833"
     CDS             complement(12229..12690)
                     /locus_tag="ACHFOB_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008233 - peptidase activity [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HFN5799644.1"
                     /translation="MRHIFFIIAIIFFISGCSFYQNLNYTRPIYNTNKETKLKTIANE
                     WKKTPYVLGGTTKKGADCSGFTQSALAQLNIRIPRTTKTQLGSGRKVSKSKLQTGDLV
                     FFKTGRGPNGMHVGIYMSKGKFIHLSTKGGVKEVELNSSYWKARYIGARRY"
     gene            complement(12699..13868)
                     /gene="nhaA"
                     /locus_tag="ACHFOB_000834"
     CDS             complement(12699..13868)
                     /gene="nhaA"
                     /locus_tag="ACHFOB_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HFN5799645.1"
                     /translation="MNNIVHKLKTLVLNEAFGGVLLIVCTLLALLVQNGSFSEHYREF
                     LNLKVGFSVGEFELNKPFLLWINDGLISIFFFAIGLELKKEFLHGDFKNPKNIVLPFM
                     AALGGILIPAMLFVLVNIGDAYTLKGWAIPTATDTAFALAILMMCGKHIPSSLKIFLL
                     SLAIFDDVGAILIIAIFYTTKLSIVAFVVAGIAILAMLVLNILGITRKSFYFICSVIL
                     WISVLKSGVHATLAGIITAFFIPMQTKNGEAFLEEIYESLKFWLAFVILPLFAFANAG
                     VNLSNIDIGAIFSGVSVGIFLGLFVGKQAGVFLFSYLAIRFKFAALPQGSNLKQLYGV
                     CILTGIGFTMSLFIDGLAYEVSDIFNYADNLAILIASFCSGIWGFIYLKFFATRS"
     gene            complement(13865..15013)
                     /gene="nhaA"
                     /locus_tag="ACHFOB_000835"
     CDS             complement(13865..15013)
                     /gene="nhaA"
                     /locus_tag="ACHFOB_000835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015385 - sodium:proton antiporter
                     activity [Evidence IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006885 - regulation of pH [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter NhaA"
                     /protein_id="HFN5799646.1"
                     /translation="MQMIKKMVLSETFPGILLIFFTFLALLCKNSSLSVIYTDFFHAN
                     FTVGFDHFQISKSLDLWINDGLIAIFFLCIGLELKYEILRGQLKNIRAVSLPIFGALG
                     GMITPALIFAAINYSHDFAMKGWAIPTATDIAFAVGILMLLGNKIPTSLKLFLLSLAI
                     FDDLGAIVIIALFYTDQLSALAIIICLFCIFALLLLNYYHITHLSLYVLVGVVLWIAM
                     LKSGVHATLAGVIISLFIPLDTKNKKPYLHEVLKDLNPWVVYFILPLFAFANAGIDIR
                     DMHLGSVFSPVSLGIILGLFLGKQLGVFTFCFIAIKLKLAKLPENIKYGKFYGICILT
                     GIGFTMSLFIDGLAYKNSDIFEHADKLAILIASFLSAIVGFIYLKIVK"
     gene            complement(15155..15337)
                     /locus_tag="ACHFOB_000836"
     CDS             complement(15155..15337)
                     /locus_tag="ACHFOB_000836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjfB family protein"
                     /protein_id="HFN5799647.1"
                     /translation="MVSDVSMGNANLMTAVNTSVLKKSMDTNEALMNELIEGMEGVSQ
                     ASAPQVSSSSGLDIYA"
BASE COUNT         5736 a         2438 c         2381 g         4871 t
ORIGIN      
        1 aaagaatatt taagcttctt aaaatatgaa aaaaacgaag aaattctgca acaatcattt
       61 agaaacttaa atggaatttt tagtaacaaa aactttacag cttatgattt aggatttagc
      121 acacaagata atgatgaacc tttttaattt atttaaattt caagccttaa tttacctttt
      181 tttaaacaca atcacgctaa agtatataaa aatttttaag gataaattat gatgcctttt
      241 agcgatgaag agcttataaa tcctgttaaa gcgagtttag aaaagagctt gcctatgctt
      301 gaacgtgatg gcggagggct tgaattttta ggaattaaaa atgggattgt ttatgtccat
      361 ttaataggag cttgtaaagg ctgtgcatcg agtggaacaa cgctaaaata tggccttgaa
      421 aggcaactta agattgatat tcatccagaa atcactataa tcaatttaaa cggcggagca
      481 gacgaatttg caaaattata aaaaacttgg aattgaacat ttttacaaga aagattttaa
      541 aactgcaaaa atgtattttt ctatggctta tgaaaaacgc aaaaataaac gcttgctaaa
      601 ttttatctgc ctttgtgatc ttgctttaaa atctcctaaa gaagcttctt tactttttga
      661 tttttatata gaacattaca aaatctctag cattgataaa gacttagaag aaattttaag
      721 tacaattgaa tttaaaaaac aagaaaacaa acaggaaaat gaatttgaag atgggcatgc
      781 gttaaattat caagattttt taaaaagcga agaagaactt ggctttcaaa aaagttttga
      841 aaatatcatt aatagcacta aattagttat tgataatcgt gatgattttt tagatttttt
      901 ggaaaaatta cttgataatg gctataaaga tatgacttta aattatatag aaaatgttat
      961 gcctcatttt tgggcaaatg atagatttat caaactccaa gaaaaactca taggatttaa
     1021 aagtgaaatt aaaacttgaa aattcattca ttacagatag taccttagag tgtgaaaaag
     1081 aatgcttttt tttacaaacc acacaaaatg ctaaatttca cgctcgagcc ttagaaaaag
     1141 gtgcaaaaat cattgatgta aatgagtgta aaaaactttt aaaaatcgat gaaaagattc
     1201 aaatcatagg aatcacagga accaatggca aaaccacaac cgcagcagcg atttactcta
     1261 tcttattgga tttaggttat aaatgcgggc tttgcgggac aagaggagct tttatcaacg
     1321 atgaacaaat tgatgaaaaa tccttaacca cctcccctat tcttaaaacc ttagagtacc
     1381 tacaaatagc tactcaaaaa aaatgtgatt ttttcatcat ggaagtaagc tcacacgcac
     1441 tcgttcaaaa ccgtatcgaa ggcttaaatt ttgttgctaa aatttttacc aatatcactc
     1501 aagatcattt agattttcac ggtacttttg aaaattacaa aaaagcaaaa gaactttttt
     1561 ttacagatga gagtttaaaa tttatcaaca aagatgcttt ggctattaaa tttaatgtgc
     1621 gtaatgcttt tacttatggc atagaaaatc ctgccttata tcaaatcaaa gcttattctt
     1681 tagaagaagg cattagtgct attgtaacaa ataaaaatca aacttttcac atagactccc
     1741 ccttactagg actttttaat ctttataatc ttttagttgc tagtgcttgt gtgaatgaac
     1801 tcataaagcc tgatttaaaa gacttggaaa aagctatcag tggatttggc ggagtttgtg
     1861 gtagagtaga acaagtagca aaaggtgtga ttgtggattt tgctcatacg cctgatggca
     1921 ttgaaaaagt acttgacact cttaaaaata aacaactcat cgttgttttt ggagcaggtg
     1981 gagatagaga taaaaccaaa cgccctttaa tgggaaaaat cgtcgaacat tttgcaaaaa
     2041 ttgctatcat tacaagtgat aatccacgta gcgaagaacc aaaaaccatc atggaagaaa
     2101 ttttatcagg ctttgctaaa aaagaaaaag ttttaatgat agaagataga aaagaagcta
     2161 taaaaaaagc tttagaacta aaagaaaatg acgatttggt cgttatttta ggcaaaggtg
     2221 atgaaactac tcaagaaatt aaagggataa aatatccttt tagtgataaa gtagttgtta
     2281 atgaaatttt aaaaaatcaa ggataatcaa tgtttgaaaa tatggatttt tctaaaatgg
     2341 gtgaactttt aaatcaagtt caagaaaaag caaaaaatat agaactagaa cttgcaaatc
     2401 gtgaatttag cgccaaaagt ggagcaggac ttgttaaagt aagcgctaat ggaaaaggcg
     2461 agattatcga tgttagcatt gatgattctt tacttgaaga taaagagtcc ttgcaaattt
     2521 tacttatttc tgcaattaat gatgttttgg ctatggttgc gcaaaatcgc tcaagtatgg
     2581 cgaatgatgt tttaggcggt tttggaggta tgaaattatg aaaaaaattt taattatttg
     2641 catgcttttt actttgtctt ttggtataga aagacctaaa tttgaagatt ttttagcagg
     2701 ttatgaaaga aataaggcaa gcatgcttaa ctatgaagga atgccagctt ttgcactcag
     2761 tgaaaattta cttgctgtgt taaaacagcc taatactaag cttaacaaat atgtaaaata
     2821 cgatccattt ttaaatttat atcttgtaag aactgacttt agcctaatcc ctactcctat
     2881 gggcgatgaa gaaaaactta ctcgcaatga ttgggttgga atttgggatc ctaataaacc
     2941 ttatataggg catattaagt atttagctca aaatattgat gaaaaagatc aacttgattt
     3001 taattctaaa ataggacttt tagggactcc atgctgtgaa atgatgggga ttgctttaaa
     3061 taatagctct tttataggca atcgctattt aaaacatttt atgaaatata acgatgttta
     3121 ttggggggat attggcgttg attttgttgt tcgagaaaat aaaatttatg ttaacaatgt
     3181 aagaaaaaat ccacaatttt taatcaacga tcaagttata agtgttgatg gcttacccgc
     3241 caatgattta agaaaactca atgaaaaaat tctttttgca gatcgcggaa gcactcttta
     3301 ttttcaagtg ttgcgtgata atatggattt aaatatttct actgaagttt ttgcaaaaga
     3361 tttgagcaaa tttaatcttc ctgattctaa accaaaacca aaaattacaa atttcacaag
     3421 caatcttggt ttaacggtta atactagtct tgttgtaacc aaaatagatc caaaatcaaa
     3481 agcatcaaat gcaggattta tggtaggaga taaaatttta cgcgttaata atattatttt
     3541 aaataatttt aaagaattac aaaatatttt aagcgctggt aatgacttta gcatcttaat
     3601 tgaacgcaaa agtactaaat tacctttatc aaatttcaac aatgaactag gcggaaatgc
     3661 caactcaggt ggcgacggta aatttcaatt tttcataagg cttactaagt gaatttaaaa
     3721 gaacttttta tccatcactt agaaaaaaat ctacctaaag tcgaaagctt tcatcctttt
     3781 tttaatgaag ctttagctct tatgctaaaa gcaggaggaa agcattttcg tgcacaattg
     3841 cttttaagcg tagtacaaag caataaacct gaacttttaa atcaagcttt agatgtggct
     3901 ttagctttgg aatttatcca tacttattca ctcatacacg atgatttacc cgctatggat
     3961 aatgcggatt ttagacgagg aattccaacc ttacacaaaa gctacgatga aactacagcc
     4021 atcttagtgg gcgatgcttt aaatactgaa gcttttttag ttctaagcca tgctcattta
     4081 aaagatgaaa tcaaaatcaa actcatcaaa acccttgcct ttaatgcagg acttaatgga
     4141 atggtcatag gacaagctat tgattgtttt tttgaagaca aaaaactgag tttaaatgaa
     4201 cttgagtttt tacacacaca taaaaccgca agattaatcg ctgcagcttt aaaaatgggt
     4261 tgtgaaattt gcgaacttaa caacgaagaa agcaatcaaa tttacaaact tggtttgaaa
     4321 ttaggactga tttttcaaat caatgatgat attatcgatg taaccacaag tcaagaacaa
     4381 agcggaaagc ctactaataa cgatattcat aaaaattctt ttgtcaattt gcttggactt
     4441 gaacaagcta taaaaacaaa agaaaatctt cttagtgaat gcgaacaaga tttagaaaaa
     4501 ctcaataaaa aactcgcaca aatgatacaa aatttaataa ttcaatactt ataaaggtaa
     4561 aaaatggaca ttcaaatttt acaagaacag gcaaatactc taagattttt aagtgccgat
     4621 atggtgcaaa aagcaaactc aggacaccca ggtgcacctt tgggcttagc agatatttta
     4681 agtgttttaa gttatcattt aaaacacaat cctaaaaatc ccacttggct aaaccgtgat
     4741 agacttgtat tttcaggcgg acatgcaagt gctttgcttt atagtttttt acatttaagt
     4801 ggctatgatt taagcttaga agatcttaaa aatttccgcc aacttcattc taaaacccca
     4861 ggacaccctg aaatttcaac tcttggagta gaaatcgcta caggtccttt aggacaaggc
     4921 gttgccaatg ctgtaggctt tgctatggcg gcaaaaaaag cgcaaaattt gctaggtagt
     4981 gatttaatcg atcataaaat ttattgtctt tgcggagatg gggatttaca agaaggcatt
     5041 tcttatgaag cttgttcttt agcaggactt cacaaacttg ataatttcat acttatttat
     5101 gatagcaaca atatctccat agaaggcgat gtaggtttag cctttaacga aaatgtaaaa
     5161 atgcgttttg aagcacaagg atttgaagtt ttaagtataa atggacacga ttatgaagaa
     5221 attaataaag ccttagaaca agctaaaaaa tccacaaaac cttgtcttat catcgcaaaa
     5281 acaactatag caaagggtgc aggagagctt gaaggcagtc ataaaagcca tggcgcacct
     5341 ttgggcgaag aagtgattaa aaaagccaaa gaacaagcag gttttgatcc aaatatcagt
     5401 tttcatatcc cacaagcaag caaaatccgc tttgaaagcg ctgtagaact tggggattta
     5461 gaagaagcaa aatggaaaga taaacttgaa aaaagtggta aaaaagaact tttagaaagg
     5521 ctattaaacc ctgattttag caagatagct tatcctgatt ttaaaggaaa agattttgct
     5581 acaagagata gtaatggtga aattttaaat gttttagcta aaaatttaga aggattttta
     5641 ggtggaagtg cggatttagg cccttcaaac aaaacagaac ttcacggcat gggagacttt
     5701 atagaaggta aaaatatcca ttttggtatc agagaacacg ctatggcagc gattaacaat
     5761 gcttttgcaa gatatggaat tttcttacca ttttcggcaa cttttttcat ctttagcgag
     5821 tacttaaaac ctgccgcaag aatagcagcc ctaatgaaaa tcaaacattt ttttattttc
     5881 acgcatgata gcataggcgt gggcgaagat ggcccaacac accagcctat agaacaactt
     5941 agcactttta gagctatgcc aaatttttta acctttaggc ctgctgatgg ggtagaaaat
     6001 gtcaaagctt ggcaaatagc cctaaatgct gatattccaa gtacttttgt gctttcacgc
     6061 caaaaactca aagctctaaa tgaacctatt tttggagatg taaaaaacgg agcgtattta
     6121 ctcaaagaaa gcaaagacgc taaatttaca cttctagcaa gtggaagtga agtttggctt
     6181 tgtctagaaa gtgcaaacga acttgaaaaa caaggttttg cttgtaatgt tgtttctatg
     6241 ccttgttttg aactttttga aaaacaagat aaagcttatc aagaaagatt gttaaaaggt
     6301 gaagttatag gcgttgaagc agcgcattct aatgaacttt ataaattttg ccacaaagtg
     6361 tatggcgtcg aaagttttgg agaaagtggc aaagacaaag atgtgtttga acactttgga
     6421 tttagcgttt caaagcttgt aaattttatc cttagcaaat aaaatgaatg caaatttcaa
     6481 atttcaaaat aacactcttt ttatctttgg aatttgggat aaaacaagta tttataagtt
     6541 aaaaataaaa gattttttag ctttgatcca aagcaaggaa gtgatttttg attttaaaga
     6601 tctaaaagca atcgataccg ctggagtgag atttttcctt gctttggaaa atgaccttaa
     6661 agataaaaat attaaaatca ccaaagaagg cttaaattca agctttcaaa ccctttttga
     6721 actttgtgaa aaaaactacc aaagactaag caaaacaaaa aaatcacata aaaatttcag
     6781 tgaatacttt atcgatcttg gaaaattaag tttagaactt ttaaaaattt taagaaaatt
     6841 catcaatttc acaggagctt ttttcacaag tcttttttta tgccttaaaa atcctaaaaa
     6901 ttttcgcttt attgcttttt tatatcatat agaaaattct gcttttaaag ccttgcctat
     6961 agttatttta actgctcttt tagtaggagt ggttttagcc tatcaggctg cttatcaact
     7021 cgcacaattt ggagccaata ttttcatagt ggatttgatg ggaatttcag ccactagaga
     7081 acttgcacct ttaatcgctg ccatagtgat cgcaggaaga agtgcaagct cttataccgc
     7141 acaaattgga gtgatgaaaa ttactgatga aattgcagct atgaatacta tgggttttcg
     7201 ttcttttgaa tttattatta ttccgcgtgt catggctttg gtagtggcta tgcctttaat
     7261 cgttgccatt agcgatgcga tcagtattat aggtggaatg atggttgcaa aattaaatct
     7321 tgatatttct tttgccgaat ttttaagacg ctttagagaa gctgtagata taaaacatat
     7381 ctttatagga cttgcaaaag cacctatttt tggattttta ataggactta ttgcttgttt
     7441 tcgtggtttt gaggtaaaaa acactacaca aagcatagga atttatacaa caaaaagcgt
     7501 tgtaaatgct attttttggg tgatagcttt tgatgcttta ttctccgtta ttttaacttc
     7561 tgcaggaatt taaatggtta ttaaagcaca aaatatcatt acaaaatttg gagaaaaaat
     7621 cgtccatgat ggcgtaagtt ttgaaatcaa aaaaaacgaa atttttggta ttttaggagg
     7681 tagtggaagt ggaaaatccg tccttttaaa acaaatgctt atgcttgaac attttgatgg
     7741 tggagaatat gaaattttag gctataaact taaaaatatc aacgaagaag atgcacttac
     7801 tttgcgtaaa aaatggggtg tggtttttca gtttgctgca ctttttagct tttttaatgt
     7861 ttatgaaaat atcgctattc ctttaaaaga atacactcat ttagatgaag atagcataca
     7921 agaactggtt ttaatgaagc taaaaatggt aggcttaaac gaaagtgttt taaaacaatt
     7981 tccaagcgaa cttagtggcg gtatgcaaaa aagagtggca attgctagag ctttagcact
     8041 tgatagtaaa ttgctttttt tagatgaacc tacttcagga cttgaccctt atagtagtcg
     8101 tgaatttgac gatttggttt tagagttaaa aaaaagtttt gatctaaata tcattttggt
     8161 tacacatgat aaagaaagta tgaaaaattt actcgatcgt tttatcattt tagaaaataa
     8221 aaaagttgga ttttgcggca cttatgaaga attacgcttg caaaatgaac gactttttaa
     8281 aagatttatg gagtaaaagt ggaaaataga gcaaattatt tttttgtagg actttttgtt
     8341 tttggagtat tttttgcaag ccttggtttc atactttggc ttggtggata ctctaaagaa
     8401 gaaagtttta agtattatga aattcacaca caagaatccg ttgcaggact tggcataaaa
     8461 gcgcccgtaa ggcttttggg cgtggaagtt ggtagcgtag aagaaatcag catttacaat
     8521 caagatgaac tcggcgttaa catacgcatc aaggtcaaaa acaatacccc tataaaagaa
     8581 gatacttttg ctactttgca acttcaaggt atcacaggac ttaaatttgt ccaacttcaa
     8641 ggcggaagta aaaatagcaa agatctagta tctatacagg gaaaacttcc agtcattcct
     8701 tttaaagaaa gttttttagc aaccatagac agacaaagtg aacatatttt ttctttggtt
     8761 aaaacggccg atgataaatc aaaagaactt ttaagcgaaa aaaatcttaa aaatctagaa
     8821 atccttttgc aaaatctagc agaattaagt gcaaatttaa acgctaattc taaaaattta
     8881 agccttaatc tttcaaacgc aagtttaaaa ataggaaaaa tggctaataa tataagcctt
     8941 agtgcgcaaa atttcaactc cagtcttaaa gacataaaag aaagtacgat gattttaaaa
     9001 aaattcataa aaaaagctga tgaaaaatta aacacttatg atgatattaa agcatctttg
     9061 atgcaaaatt tagagctttt taaacgagtt ttaattgaaa gcaatattct aatagaaaat
     9121 ttacaaaaca gccctgctga tttgattttt aaagaaacca aacctaaact aggaccagga
     9181 gaaaaataat gctaaagcaa ttattctata ttttgacttt tatttttatg ttatgcggat
     9241 gctctttaag acacgaaacc atcaacaaaa atgaaaatat catattaaaa gatgaaggaa
     9301 tagactcaaa tatttttttt aaaaaaaccg gtaaaattct taaaattcgc aatgcaaatg
     9361 cacctttgta tttaaactcg cgagctattg tttatataga taatggtttt agcaacaaat
     9421 acgcacatta tttctgggga gatttaccaa gcaatcttta ttctttttta attttatcaa
     9481 aatttgaaca aagcaatatt tttacaaccc tactttcttc aacaagctct ttaaatgcgg
     9541 attatgctct tgaaagcagg attaactctt ttgagcaaat tcttaataac aatgaaaact
     9601 acgctcaaat ttctataagc gtaaatttca taaatcttga aaacaatcaa ataatagctc
     9661 ataaaatttt caatactaaa gaaaaaatag aaaaaaaaga tatccgctct acttataatg
     9721 cttttcaaaa agccttgaat aaaattggca atgagattgt tttttgggta aattctaact
     9781 tatcctaatt taggaacact ttttgctttt taaatattta gcaatatttt tgaaaggtaa
     9841 acaatgaaaa gtgatttaga tatatttaaa aaacacttag gtgaaattca gggcgtgaat
     9901 gaatttaaag caaatcaaat ttgctctcaa atcaatgatg caaatgattt tataggagca
     9961 cttcaagtgc ttgatatgtc tttaaaaaaa atagaaaaaa gcattctaga aagaatagat
    10021 gaaaattcag atgatatgca aaaaagaact cttgatgcca cagcatcaca acttatacaa
    10081 aactgctctt tcatgggaac agctcttttt ggaaatattt tcaatgttta tgttggtaaa
    10141 aaactttttg aatttgaaat tgctaatcca cttttaattc ttcaaacaag taattacgaa
    10201 ggtgtattgg cctacataca agacaaaaga gatgaaataa aaatcattct atcagagtta
    10261 gcaaccgcaa ttaccatggg cgaaactatg gataatgctg gaatttataa ctctacaatg
    10321 gattttaaaa atttatttaa ataagaatag taatcgtttg ttctctttaa gcaaatataa
    10381 tatattttag cttaaagaga ttttccaaac tcttaaaaga gagttaggct acgaataaaa
    10441 agggggaggg aaatagccta acccaaacga gatcttaaaa gatctcttta aactaaaata
    10501 aatatttaga taatttaaca atttttatta aattatctaa accatattta tgttttagtt
    10561 taatacgatg tgacatttta ttctaaaaac acttaatcta ctataaaaat atcatttagt
    10621 aacttaaatt attaaagaat attactacaa tattatttaa aaaattttaa atttttagga
    10681 ttttaagaaa aaaatattat ttttataatt taatatcata tcatagaaag aatttcagca
    10741 cgcccattaa tcacggcaac acaatgttca taatgagccg cattcagccc atcaatactt
    10801 ccagcatccc attttccatt ataatgcttt ggtgttccat ctttttggca tatcataggc
    10861 tctatgcaaa acaccattcc atttttaatt ttagggccac tttttgcact cgcacctttt
    10921 tctaaatagt ttaaaatttc aggctctcca tggggctttc gtcctatacc atgcccgcaa
    10981 tatccacgaa gcgggacaaa acctcttgca tggataaatt cgcctaaagc agctgaaagt
    11041 tccttaaaac gcattccatc acgaataata tctatagcat gatataacgc gtctttagca
    11101 caagagatta aagctttatc agtgggtgaa acttctccta tagcaatagt tcttgctgca
    11161 tccccataat acccatcaat caaacttccc acatcaagac ctaaaatatc accctctttg
    11221 ataattttat catctggaat tccatggata caaacttgat ttaaagatgt gcaaatggca
    11281 cctggaaaac cataaagccc cttaaatgat ggcttggcgc caaggcttaa aatataatct
    11341 tctgccattt tatcaatttg ttttaagctc attcctattt taatttcatt ctctaaaaaa
    11401 tttaaagttt ttgctacaat ttgatttgct attcttaatt tttctatttc atctggtttt
    11461 ttcaattcta tcattttatt tccttataaa tttagccaaa ttttagcagt attttttaaa
    11521 gattcaacat cgcttgaagc ataaaaatgt aatcttgctt tatgattttt caaatctata
    11581 ttttctcttt ctttaagaaa ttcaactatg gcatctcctg aatgaattaa ttttgtttta
    11641 tcgccaaaat acttacttaa agaacaacct agtaaaggga aatgagtgca agcgagtatc
    11701 aaagcatctg gagttgtgat atttttaaaa taatactcca tagcactttg caaaaaatct
    11761 ccttcaaaaa taccttcttc aaccataggc acaaaaagcc ctgtagctaa agcatttata
    11821 tttgtatatc cttgggataa taaacgcttt tggtattctt ctgatttaat ggttgctttt
    11881 gttgcaatga ctaaaatttc tttattttta tcatgcaaag cttttatcgt tgcttcaacc
    11941 cctgcatcaa ttacaccata tactggaaaa tgtgcttttg tccttaaagc atctaaagca
    12001 taagcactag cagtattaca tgcaatgata agcatatcaa tttgaaattg ttcaaaaaat
    12061 tccaatgctt caagacagaa ctttataata gtatctttat cttttactcc ataaggaact
    12121 cttgcggtat ctccataata gataatttca tcaaaaagtc tagcttcata aagagatttt
    12181 aaaacgctaa gcccccctac cccgctatca aatacaccta ttttcacttt aataccttct
    12241 tgctcctata taacgagcct tccaataaga actatttagc tcgacttctt ttactccacc
    12301 tttagtagat aaatgtataa attttccctt gctcatataa ataccaacat gcataccatt
    12361 tggccctcta cctgtcttaa aaaataccaa atctcctgtt tgcaattttg atttagaaac
    12421 ttttctccca gaacctaatt gagtttttgt ggtgcgaggt atgcgtatat taagctgagc
    12481 taatgcactc tgtgtaaatc ctgaacaatc agcacctttt ttagtagttc cacctaaaac
    12541 ataaggagtt tttttccatt catttgcaat agtcttaagt tttgtttctt tatttgtatt
    12601 ataaatcgga cgagtatagt ttaaattctg ataaaaacta catccgctta taaagaatat
    12661 aatcgcgatg atgaaaaaaa tatgcctcat caatcccctt aagatcgagt agcaaagaat
    12721 ttaagataaa taaaacccca aatcccagaa caaaatgaag ctatgagaat agctaaatta
    12781 tctgcataat taaaaatatc actgacttca tacgccaagc catcgataaa caaactcatt
    12841 gtaaaaccaa ttcctgtaag tatacaaacc ccataaagtt gtttcaaatt tgaaccttgg
    12901 ggcaaggctg caaatttaaa gcggattgcc aaataagaaa acaaaaatac acccgcttgt
    12961 ttacccacaa aaagccccaa gaaaatacct acacttacac ctgaaaaaat tgctcctata
    13021 tcgatattgg ataaatttac cccagcgtta gcaaaagcaa ataaaggcaa tataacgaaa
    13081 gcgagccaaa attttagact ttcatagatt tcttctaaaa atgcttctcc atttttagtt
    13141 tgcatcggta taaaaaatgc tgttatgatt ccagctaaag ttgcatgcac accacttttt
    13201 aaaacactaa tccaaagaat aactgagcaa ataaaataaa aagactttct tgttattcct
    13261 aaaatattta aaacaagcat tgccaaaata gcaattcctg caacgacaaa agcaactatt
    13321 gataattttg tcgtataaaa aatagctata attaaaatag cacccacatc atcaaaaata
    13381 gccaaagaaa gtaagaaaat ttttaaactt gatggaatat gcttgccaca catcattaaa
    13441 atcgctaagg caaacgctgt atctgtggct gtaggtatag cccaaccttt taaagtataa
    13501 gcatctccta tatttaccaa aacaaacaac atcgcaggta taagtatacc ccctaaagca
    13561 gccataaaag gtaaaacaat atttttagga tttttaaaat ccccgtgcaa aaattccttc
    13621 ttaagctcaa gccctatagc aaagaaaaat atagatataa gcccatcatt tatccaaagt
    13681 aaaaaaggct tgttaagctc aaattcgcct acgctaaatc cgacttttaa atttagaaat
    13741 tctcgataat gttcgctaaa agacccgttt tgcacaagca aagcaagcaa agtacaaact
    13801 ataagtaaaa caccaccaaa agcctcgttt aaaactaaag tttttaattt atgtactata
    13861 ttattcattt aacaatctta agataaataa aaccaacaat ggcacttaaa aaacttgcta
    13921 ttaaaatagc aagtttatcc gcatgttcaa aaatatcact atttttatag gccaaaccat
    13981 caataaacaa actcatcgta aaaccaatgc ctgttaaaat acatatacca taaaattttc
    14041 catatttaat attttcaggt agttttgcaa gcttaagttt gatagcaata aaacaaaaag
    14101 taaaaacacc tagttgcttt cctaaaaata atcctagaat aattccaagg cttacaggcg
    14161 aaaataccga accaagatgc atatctctga tatcaatccc agcattagca aaagcaaata
    14221 aaggcaagat aaaataaacc acccaaggat ttaaatcctt aagaacttca tgcaaataag
    14281 gttttttatt ttttgtatca agtggtataa ataaagaaat aatcacacca gccaaagtcg
    14341 catgtactcc acttttaagc atagctatcc acaatacaac acctactaac acatacaaag
    14401 aaagatgggt gatgtgataa taatttaaca aaagcagagc aaatatacaa aacaaacaaa
    14461 taataatcgc caaagctgaa agctgatctg tataaaataa agcaataata acaatagcgc
    14521 ccaaatcatc aaaaatagct aaagaaagta aaaaaagctt taaacttgta ggaattttat
    14581 ttcctaaaag catcaaaata cccactgcaa aagctatatc ggttgctgta ggtattgccc
    14641 aacctttcat agcaaaatca tgggaataat taatagcagc aaaaattaaa gcaggagtaa
    14701 tcataccccc caaagctcca aatataggta aagatacagc tcttatattt ttaagctgtc
    14761 cgcgtaaaat ttcatatttt aactcaagcc ctatacatag aaaaaatata gctatcaaac
    14821 catcatttat ccataaatcc aacgactttg aaatttgaaa atgatcaaat cctactgtaa
    14881 aattagcatg aaaaaaatct gtataaataa cacttaaaga agaattttta cataataagg
    14941 ctaaaaatgt aaaaaatata agcaaaatac cagggaaagt ttcacttaaa accatcttct
    15001 ttatcatttg catccttgct cctaaataaa tattataaaa atttaatacg ataaataaaa
    15061 tggcaaaatt ataacgaaaa aatactaaag aaataattat ttaaaaaaac aggctcaaga
    15121 taccaacaag ttcttaagct tgttcttaag atatttaagc gtaaatatcc aaaccactag
    15181 agctagaaac ttgtggagcg gaggcttgag agacaccttc cataccttcg atgagttcat
    15241 tcatcaatgc ctcgtttgtg tccatagatt ttttcaaaac tgaagtatta acagcagtca
    15301 ttaaattagc attacccata gaaacatctg aaaccatatc gtcctccttt tagattgagt
    15361 cttaagactt tatttaaatc ggatgatatt ttcaaaactt aatatttttt actaaaactt
    15421 tttaaa
//
LOCUS       DAZBIH010000033        14755 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.033, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000033 DAZBIH010000000
VERSION     DAZBIH010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14755)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14755)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14755
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.033"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            103..414
                     /gene="rpsJ"
                     /locus_tag="ACHFOB_000837"
     CDS             103..414
                     /gene="rpsJ"
                     /locus_tag="ACHFOB_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HFN5799648.1"
                     /translation="MERIRLKLKAYDHRVLDRTVAAIVEAVKRTGADIRGPIPMPTKI
                     KRYTVLKSPHINKDSREQFEIRIHARMLDIVAATPDTVDSLTKLDLAPEVSVEVRAMG
                     K"
     gene            424..999
                     /gene="rplC"
                     /locus_tag="ACHFOB_000838"
     CDS             424..999
                     /gene="rplC"
                     /locus_tag="ACHFOB_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HFN5799649.1"
                     /translation="MEYIVEKIGMSRTITNPSIAVTLLRVVNAKVCEVEGGKALVAYP
                     KGKASNKCVAGQQKKYNLSAEYNRFATLEVANTEAGDLDETPLNEAKILKVSFNTKGR
                     GYSGVMKRHNFAGGPASHGSRFHRRHGSIGNREWPGRVQPGMKMAGHYGNTKVTVKNE
                     VVSYDAENKILVVKGAVPGYNGAMGKIRIAK"
     gene            996..1610
                     /gene="rplD"
                     /locus_tag="ACHFOB_000839"
     CDS             996..1610
                     /gene="rplD"
                     /locus_tag="ACHFOB_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HFN5799650.1"
                     /translation="MSKVVVLNDKLEKAGELDLPSKYAEVNPHNLYLYVKSYLASLRA
                     NTAHTKGRSDVSGGGKKPWRQKGRGGARAGSTRTNVWVGGAVAFGPTNERNYFQKVNK
                     KQKRLALERALADKAAKGALFTADSLAIESGKTKDANAVIKKLGVKDALIVKDLLDEK
                     TLLAYRNLANCYVVDVTEVNAYLVSVFNAVIIEKSALESITKEG"
     gene            1613..1894
                     /locus_tag="ACHFOB_000840"
     CDS             1613..1894
                     /locus_tag="ACHFOB_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HFN5799651.1"
                     /translation="MADITDIKTILYTEKSLNLQEQGVVVIQTSPKMTKTGLKAVLKE
                     YFGVTPKSINSLRMDGKVKRFRGRLGQRNDYKKFYVKLPEGVSLENTEA"
     gene            1896..2726
                     /gene="rplB"
                     /locus_tag="ACHFOB_000841"
     CDS             1896..2726
                     /gene="rplB"
                     /locus_tag="ACHFOB_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012660814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HFN5799652.1"
                     /translation="MAIKTYKPYTPSRRYITGLSSEDITAKPSVRSLLVKLPVHAGRN
                     SYGRITSRHKEAGAKKLYRIIDFKRRKFGIEGKVEAIEYDPYRNCRIALIAYKDGEKR
                     YILQPRGLSVGDIVAAAESGLDIKPGNAMKLKNIPVGTIVHNVELKPGKGGQMIRSAG
                     AYAQLMGKEEKYVILRLASGEMRQVLAECMASIGEVGNEEWANVTIGKAGRNRHRGIR
                     PQTRGSAMNPVDHPHGGGEGKKNSGRHPVTPWGKPTKGAKTRRKKASDKLIISRRKGK
                     "
     gene            2728..3009
                     /gene="rpsS"
                     /locus_tag="ACHFOB_000842"
     CDS             2728..3009
                     /gene="rpsS"
                     /locus_tag="ACHFOB_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HFN5799653.1"
                     /translation="MARSLKKGPFVDDHVMKKVIAAKKANDNKPIKTWSRRSTITPDM
                     IGLTFNVHNGKSFIPVYITENHIGYKLGEFAPTRTFKGHKGSVQKKIGK"
     gene            3020..3463
                     /gene="rplV"
                     /locus_tag="ACHFOB_000843"
     CDS             3020..3463
                     /gene="rplV"
                     /locus_tag="ACHFOB_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HFN5799654.1"
                     /translation="MSKALIKFIRLSPTKARLIAREVQGMNAELAMASLKFMPNKGAK
                     YIANAISSAVANGGFEANEVVVKSCRVDAAAVLKRFRPRARGSASRIRKPTSHILVEV
                     AKAEVKAEEKKTVAKKAPAAKKTTTTKAPAKKTTSTKKATAKKES"
     gene            3463..4164
                     /gene="rpsC"
                     /locus_tag="ACHFOB_000844"
     CDS             3463..4164
                     /gene="rpsC"
                     /locus_tag="ACHFOB_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HFN5799655.1"
                     /translation="MGQKVNPIGLRLGINRNWESRWFPTKANLVENIGEDYKIRAFLK
                     RKLYYAGISQILVERTAKKLRVTVVAARPGIIIGKKGSDVDNLRKELQDLIGKDVNIN
                     IKEERKAGASAQLAAESVATQLEKRIAFRRAMKKVIQGAQKAGAKGIKVSVSGRLGGA
                     EMARTEWYLEGRVPLHTLRAKIDYGFAEARTTYGNIGVKVWIFKGEVLHKGMQPEKTE
                     ESAPAKKPRRTRRGK"
     gene            4167..4592
                     /gene="rplP"
                     /locus_tag="ACHFOB_000845"
     CDS             4167..4592
                     /gene="rplP"
                     /locus_tag="ACHFOB_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HFN5799656.1"
                     /translation="MLMPKRTKYRKMMKGRNRGYANRGTEFTFGEFALKATEAGRINS
                     RQIEAARIALTRFVKRQGKTWIRVFPDKPLTKKPLETRMGKGKGAVEEWVMNIKPGRI
                     IYEMAGVSEEMAREALTLAMHKLPFKTKFVTRESQNEIY"
     gene            4579..4764
                     /gene="rpmC"
                     /locus_tag="ACHFOB_000846"
     CDS             4579..4764
                     /gene="rpmC"
                     /locus_tag="ACHFOB_000846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HFN5799657.1"
                     /translation="MKYTEIKDKTAAELATMLKEKKVLLFTLKQKLKTMQLTNPKEIS
                     QVKKDIARINTAINALR"
     gene            4774..5025
                     /gene="rpsQ"
                     /locus_tag="ACHFOB_000847"
     CDS             4774..5025
                     /gene="rpsQ"
                     /locus_tag="ACHFOB_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HFN5799658.1"
                     /translation="MAFKREIQGVVVKIAGEKTASVLVERKVVHPRYRKIVKRFKKYL
                     IHDERNEVKVGDTVVAVECRPLSKRKSFRLKSVLATGVE"
     gene            5025..5393
                     /gene="rplN"
                     /locus_tag="ACHFOB_000848"
     CDS             5025..5393
                     /gene="rplN"
                     /locus_tag="ACHFOB_000848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011567679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HFN5799659.1"
                     /translation="MIQSFTRLAVADNSGAKELMCIKVLGGSKRRYATVGDVIVASVK
                     KALPNGKVKKGQVVKAVIVRTKKEIHRDNGSLIRFDENAAVILDNKREPIGTRIFGPV
                     GREVRYGGFMKIVSLAPEVL"
     gene            5393..5626
                     /gene="rplX"
                     /locus_tag="ACHFOB_000849"
     CDS             5393..5626
                     /gene="rplX"
                     /locus_tag="ACHFOB_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HFN5799660.1"
                     /translation="MAVKLKIKKGDSVKVITGDDKGKTGKVLAVYPKTLKVVVEGCKI
                     AKKAIKPSEKNPNGGFINKEMPMDISNVAKVQE"
     gene            5630..6175
                     /gene="rplE"
                     /locus_tag="ACHFOB_000850"
     CDS             5630..6175
                     /gene="rplE"
                     /locus_tag="ACHFOB_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HFN5799661.1"
                     /translation="MMRLKEKYNQSIKPALVKEFDIKNPMLIPVIEKVVISVGAGELA
                     KDQKVLQNVADTISLIAGQKAVITKAKKSVAGFKVREGFPVGVMVTLRKENMYAFLDK
                     LISIALPRVKDFRGLSRDGFDGRGNYNFGLDEQLMFPEVEYDKILRTHGMNISIVTTA
                     QNDKQAQKLLELIGVPFTKGK"
     gene            6177..6362
                     /locus_tag="ACHFOB_000851"
     CDS             6177..6362
                     /locus_tag="ACHFOB_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003948630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HFN5799662.1"
                     /translation="MAKKSMIAKAARKPKFKVRAYTRCQICGRPHSVYRDFGICRVCL
                     RKMGNEGLIPGLKKASW"
     gene            6372..6767
                     /gene="rpsH"
                     /locus_tag="ACHFOB_000852"
     CDS             6372..6767
                     /gene="rpsH"
                     /locus_tag="ACHFOB_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HFN5799663.1"
                     /translation="MINDIISDSLTRIRNAGMRKLETTKLLHSKVVEALVGIFQAKGY
                     IESFNVIEEDKKKFINVVLKYDEKGKSVINELKRISKPGRRVYKGKDEIKRFKNGYGT
                     IVVSTSHGVLANDEAYKAGVGGEILCTIW"
     gene            6846..7382
                     /gene="rplF"
                     /locus_tag="ACHFOB_000853"
     CDS             6846..7382
                     /gene="rplF"
                     /locus_tag="ACHFOB_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_function: GO:0019843 - rRNA binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HFN5799664.1"
                     /translation="MSRIGKQPIAIPAGVEVKLEGNLLKFKKGNLAKELDTKANVNVE
                     IKDNNILFSPKGEDRQSRAYWGTYRALAYNIVVGLTQGFSKTLEINGVGYKAALKGKV
                     LELSLGFSHPINYDIPEGIEIVVDKNTIAVKGSDKQVVGQVAAQIREFRPPEPYKGKG
                     VKYSDERIIRKAGKTSKK"
     gene            7392..7748
                     /gene="rplR"
                     /locus_tag="ACHFOB_000854"
     CDS             7392..7748
                     /gene="rplR"
                     /locus_tag="ACHFOB_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HFN5799665.1"
                     /translation="MRANVLKRKLTLRIKRKKRIRAKISGCENFPRISVFKSNRTLYI
                     QAIDDVKAVTLAAVDGRKLGVKANKEGAKKIAAEFAKTLKAKKIEQAVFDRNGYVYHG
                     VIAALAESLRENGIRL"
     gene            7760..8203
                     /gene="rpsE"
                     /locus_tag="ACHFOB_000855"
     CDS             7760..8203
                     /gene="rpsE"
                     /locus_tag="ACHFOB_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HFN5799666.1"
                     /translation="MEKYNREEFEEVIVDIGRVTKVVKGGRRFRFTALVIVGNRKGLV
                     GVGYGKAKEVPDAIRKAVDDAFKNIVEVKTKGSTIAHDVEVKYNASRILLKPASEGTG
                     VIAGGSTRPIVELAGIKDILTKSLGSNNSANVVRATIKALTMLKG"
     gene            8208..8600
                     /gene="rplO"
                     /locus_tag="ACHFOB_000856"
     CDS             8208..8600
                     /gene="rplO"
                     /locus_tag="ACHFOB_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HFN5799667.1"
                     /translation="MNLTKAAGSTHKTKRIGRGQGSGMGKTATKGGKGQTARKGYNEK
                     RGFEGGQQPLQRRLPKVGFTSKIQKPYVINVEKITAVKELSEITFESIKSVHKISKSV
                     NKIKLIGASAKDLVSKIKDENISVTGSK"
     gene            8600..9865
                     /gene="secY"
                     /locus_tag="ACHFOB_000857"
     CDS             8600..9865
                     /gene="secY"
                     /locus_tag="ACHFOB_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0043952 - protein transport by the Sec
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HFN5799668.1"
                     /translation="MNRALTNKILITLAFLFAYRVLAYVPVPGVNADVIAEFFNNNQN
                     NALGLFNVFSGGAAERFSIISLGIMPYITASIIMELLAATFPNIGKMKKERDSMQKYM
                     QIIRYATIVITLVQSIGVAIGLQSLHGRGGAGAIMVEDLNMFIALCAISMLAGTMLLM
                     WLGEQITQRGIGNGISLIIFAGIVSGIPRAISGTVGQINSGEMNFLTAFAIFALILIT
                     IGVIIYVELGERRIPISYSRKVVMQNQNKRIMNYIPIKLNLSGVIPPIFASAILMFPT
                     TILQTSTNPYLQAINDFLNPNGYLFHVLTFLFVIFFAYFYASIVFNAKDIAENLKKQG
                     GFIPGIRPGEGTSNYLNEVASRLTLSGSIYLGLVATLPWVLVKFMGVPFHFGGTSVLI
                     VVQVALDTMRKIEAQIYMSKYQTLSAVGL"
     gene            10091..10363
                     /locus_tag="ACHFOB_000858"
     CDS             10091..10363
                     /locus_tag="ACHFOB_000858"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799669.1"
                     /translation="MILLSFCGSIIYGLPYFRKYYYDDYMALYHLDNFQMGLLGSAYG
                     LLGLFSYALGGYLADRFAPKKLLIFSLVLQDVGVCFIFILLRLRLL"
     gene            10360..10545
                     /locus_tag="ACHFOB_000859"
     CDS             10360..10545
                     /locus_tag="ACHFOB_000859"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799670.1"
                     /translation="MIIYGLWGITSLLTFWPSLMKIIRTLASKQEQARAYGVFEGGRG
                     VVSTIYLAIATAIFGYF"
     gene            10623..10994
                     /locus_tag="ACHFOB_000860"
     CDS             10623..10994
                     /locus_tag="ACHFOB_000860"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5799671.1"
                     /translation="MFLLKESKHEKSENLKWSDFLSLIKNPALWLVVAITFCTYFFNM
                     SFYYFTPYASNVIGTSAVFAAILAVLTSYIRPIVSIVGGFVADGFGKAKVMLVGFVTM
                     GLGVVLLMFSAYWGVLYKWWL"
     gene            10982..11293
                     /locus_tag="ACHFOB_000861"
     CDS             10982..11293
                     /locus_tag="ACHFOB_000861"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799672.1"
                     /translation="MVALTLACVIVYVAMYSNFSIYYSLLSEGKIPVHLAGMAIGIVS
                     TFGYLPEVFAPVLAGDLLDKYQGVKGFHIYFSIMIAMAIMGANFCLFWIKKYNKKRKK
                     I"
     gene            11290..13302
                     /locus_tag="ACHFOB_000862"
     CDS             11290..13302
                     /locus_tag="ACHFOB_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013463640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HFN5799673.1"
                     /translation="MKKIIKDFKFKVKVIENIWITLKDGTRLSSRIWFPQTDEKLPAI
                     LEYIPYRKNDGTRTRDEPMHGYFAGNGYVVVRVDMRGSGESDGLLKDEYLKQEQDDAL
                     ELIEWIAKQEWCNGKVGMMGKSWGGFNSLQVAARRPKNLKAIIVVGFTDDRYNEDIHY
                     KGGCLLNDNFWWGNIMLAYQARFVDPKIDPNGREKWLHRLENMPLWPALWMEHNLKDK
                     YWKHGSVSENYEDIQVPVFALDGWADSYTNPVFTLMQGLKVPRKAIIGPWAHVYPHDG
                     FPAPAMGFLQEALKWWDKWLKDEDNDVLDCPMIQAYIEDPLKPSSKVSEVKGRFVGLE
                     SYPSKDINYHTYFLNPYRLTQEKSKQSIKINTPQNHGLLAGEWMGAVVLGESPADQRL
                     DDGLAVVFESEILQDEFDVLGYPLLKVKLNSDKPKAMLFAQLSEVREDGFVQRVSYGV
                     LNLALNKERSEFTPLIKNEWIQRELRLDCCGYRFAKGSKIRLSLATTFWPMFWLMPEN
                     VTLTLDLNECDFALPVFSGKDSNKVNLEAQSAPLTPLTLLKEGRVDRSITYDILSDTY
                     ACITDGVGGVFGEGIYRFDEIDVLVEHNLKRELVLQNEDPLSAKHTITQKMKIGRENC
                     MMDADIILTQTSDKEYFYIKGKMQVKENEKLVFDKNYNYKTLRKSL"
     gene            complement(13370..14641)
                     /locus_tag="ACHFOB_000863"
     CDS             complement(13370..14641)
                     /locus_tag="ACHFOB_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5799674.1"
                     /translation="MNGKTYKFHPNDTKMDKKIIQITEKSGFKAAVFSMAAMTMLGSV
                     VISSALPAINRHFEELLTQSGATLASSFTLAHLDILVRLVLTIPAIFVVILSPFAGIL
                     MDKFGKLKFILPAMVVWTISGVSGFFLNDIYAILTSRAIFGMATAFIMTGASALLGDY
                     YSRGGFNRRENALSLQGFFCAVGGAVFISIAGFVSSYSWRYPFLVYGLGILITLMAII
                     YLFEPRKFKFYNHTKIEAKTNYWQFFPIYFIGFFIMVVYYISPTQLPYYIEEHLGLDP
                     KYIGISMSVSALCYGFFSLSYRYIIKFLSIKTIYVLTLFIVSCSFLLLFLVDSFFTVL
                     IALALLGMGGGIMLVNNTAYLFSICPENARARAYGILASCIFLGQFLSPIISQPIVRQ
                     MGLVDAFLIWSIVIFIMCIVFLFLKQKPRIN"
BASE COUNT         5263 a         1989 c         3011 g         4492 t
ORIGIN      
        1 atcaaattcc ttgactttga aaacaagatt ttatatactc tcatttcaat ttttataaat
       61 tggttagttt ttaactaacg agttcttttt aaaggaaata ttatggaaag aattaggctt
      121 aagctaaaag cttatgacca tcgagtacta gacagaacag ttgcagcaat cgtagaagct
      181 gttaaaagaa caggtgcgga tatcagaggt ccgataccaa tgcctactaa aatcaaacgc
      241 tatacagttt taaaatctcc acacattaac aaagattctc gtgagcagtt tgaaataaga
      301 attcacgcac gtatgctaga tatagtagca gcgactccag atacagttga ttctttaact
      361 aagcttgatt tagcgccaga agtaagcgtt gaagtaagag ctatgggtaa gtaaggataa
      421 gatatggaat atattgtaga aaaaatcgga atgagcagaa caattactaa tccaagtatc
      481 gctgtaactt tactaagagt tgtaaatgca aaagtatgtg aagttgaagg cggaaaggct
      541 ttagtagcat atccaaaagg taaagcaagt aataaatgtg tcgcaggaca acaaaaaaag
      601 tataatcttt ctgcagaata caatagattt gcgactttag aagtagcaaa tactgaagca
      661 ggagatttag atgaaactcc attaaatgaa gcaaaaattt taaaagtaag ctttaacact
      721 aaaggtagag gttatagcgg tgttatgaaa agacataact tcgcaggggg tccagcaagt
      781 cacggttcta gatttcacag acgccacgga tctattggca atagagaatg gccaggtcgt
      841 gttcaaccag gtatgaaaat ggcaggacac tatggaaata ctaaagtgac cgttaaaaac
      901 gaagttgtat cttatgatgc tgaaaacaaa attttagtag ttaaaggtgc agtaccaggt
      961 tataatggtg ctatgggtaa aataaggatt gcaaaatgag taaagtagtt gttttaaatg
     1021 ataaattaga aaaagcaggt gaacttgatt taccttcaaa atatgcggaa gtaaatccac
     1081 acaatcttta cttatatgta aaatcttacc ttgcaagttt aagagcaaat acagctcata
     1141 ctaaaggtag aagtgatgta agtggtggtg gtaaaaaacc ttggagacaa aaaggtcgtg
     1201 gcggtgctag agcgggttca acaagaacta acgtttgggt aggcggtgcg gttgcttttg
     1261 gtccaacaaa tgaaagaaac tacttccaaa aagtaaataa aaaacaaaaa agattggcgc
     1321 ttgaaagagc tttagcagat aaagcagcta agggagcatt atttactgct gattctttgg
     1381 ctattgaaag tggtaaaaca aaagatgcaa acgctgtgat taaaaaactt ggcgtcaaag
     1441 atgctttaat cgttaaagat ttactagatg aaaaaacact tttagcttac agaaatttag
     1501 caaattgcta tgtagttgat gtaactgaag taaatgctta tttagtatct gtatttaatg
     1561 ctgttatcat agaaaaatca gcgttagaat ctattacaaa agagggataa ttatggcaga
     1621 tattactgat ataaagacta tactttacac agaaaaaagt ttgaatttgc aagagcaagg
     1681 tgtcgtagtt attcaaactt caccaaagat gactaaaaca ggcttaaaag cggttttaaa
     1741 agagtatttt ggtgtaactc caaaaagcat caattcatta agaatggatg gaaaagttaa
     1801 gcgttttaga ggtcgtttag gtcaaagaaa cgattacaaa aaattctatg ttaagctacc
     1861 tgaaggtgtt agcttagaaa atacggaggc ttaagatggc aattaaaact tataaaccat
     1921 atactccaag tagaagatat atcacaggtt taagttctga agatattaca gctaaaccaa
     1981 gtgtgcgctc actacttgtt aaacttccag tgcacgcagg tcgtaatagc tatggaagaa
     2041 ttacaagtcg tcataaagaa gcgggtgcta aaaaacttta cagaattatt gattttaaac
     2101 gtcgtaaatt cggtatagaa ggcaaagtag aagcaatcga gtatgatcca tatagaaatt
     2161 gtagaattgc tttgattgct tataaagatg gggaaaaaag atatattctt caaccacgtg
     2221 gattaagcgt tggcgatatc gttgcagctg ctgaaagcgg acttgatatt aaaccaggta
     2281 acgcaatgaa acttaaaaac attcctgtgg gtactattgt tcataatgtt gagttaaagc
     2341 caggtaaagg cggtcaaatg attcgttctg cgggtgctta cgcacaactt atgggtaaag
     2401 aagaaaaata tgttatttta agacttgcaa gcggcgaaat gagacaagtt ttagctgaat
     2461 gtatggcaag tatcggcgaa gtaggtaacg aagaatgggc taatgtaact atcggtaaag
     2521 caggtagaaa tcgccataga ggtatccgcc cgcaaactcg tggttctgca atgaacccag
     2581 tagatcaccc gcacggtggg ggtgaaggta agaaaaattc aggccgtcat ccagtaactc
     2641 catggggtaa accaactaaa ggtgcgaaaa ctcgtcgtaa aaaagctagc gataagctaa
     2701 taatttcaag aagaaaagga aagtaagatg gctagatcac taaaaaaagg tccttttgtt
     2761 gatgatcatg taatgaaaaa agtcatcgct gctaaaaagg ctaatgataa taaaccaatt
     2821 aaaacttggt caagaagaag cacaattact cctgatatga taggacttac atttaatgtt
     2881 cataatggta aaagcttcat tccggtttat attactgaaa atcacatcgg ttataaactt
     2941 ggtgaatttg ctccaacacg cacattcaaa gggcataaag gctctgtgca aaagaaaatt
     3001 ggtaagtaag ggataagata tgagtaaagc attaattaaa ttcataagat tatctccaac
     3061 taaagcaaga ttgattgcta gagaagttca ggggatgaat gcagaattag ctatggctag
     3121 tttaaaattt atgccaaata aaggtgcaaa atacatcgca aatgcaattt caagtgcagt
     3181 agcaaatggt ggctttgaag caaacgaagt ggttgtaaaa agttgtcgtg ttgacgcagc
     3241 tgcggtatta aaaagattta gaccaagagc tagaggaagt gcaagtcgta ttagaaaacc
     3301 aacttcacat attttagtag aagtggcaaa agcagaagtg aaagctgaag agaaaaaaac
     3361 agtagctaaa aaagctccag cagctaaaaa gactactaca acaaaagctc cagctaaaaa
     3421 aacaacaagc actaaaaaag caacagcgaa aaaggaaagc taatgggaca aaaagttaat
     3481 ccaattggtc taagactagg aatcaataga aattgggaat caagatggtt tccgactaaa
     3541 gcaaatttag tagaaaatat cggtgaagat tacaaaatca gagctttctt aaaaagaaaa
     3601 ctttattacg caggaatcag tcaaatttta gtagaaagaa ctgctaaaaa acttcgcgtt
     3661 actgtagttg ccgcaagacc aggtatcatc atcggtaaaa aaggtagtga tgttgataat
     3721 ttaagaaaag aattgcaaga tttaatcggt aaagatgtaa atatcaatat caaagaagaa
     3781 agaaaagcag gagcttcagc tcaacttgct gctgaaagtg ttgcaactca acttgaaaaa
     3841 agaattgctt ttagaagagc gatgaaaaaa gtaattcaag gtgcgcaaaa agcaggtgct
     3901 aaagggatta aagtttcagt ttctggtcgt ttaggcggtg ctgaaatggc aagaacagaa
     3961 tggtatcttg aaggacgcgt tccacttcat actttaagag caaaaattga ttatggtttt
     4021 gcagaagcta gaactactta tggaaacata ggggttaaag tatggatctt taaaggtgaa
     4081 gtattgcaca aaggtatgca acctgaaaaa actgaagaaa gtgctccagc taaaaagcca
     4141 agacgcacaa gaaggggtaa ataatcatgt taatgccaaa aagaactaaa tatcgcaaaa
     4201 tgatgaaagg gcgtaacaga ggttatgcta atcgtggaac agaatttact tttggtgaat
     4261 ttgcattaaa agcaactgaa gcaggacgca ttaactcacg ccaaatcgaa gcagcgcgta
     4321 tcgctttaac tcgttttgtt aaaagacaag gaaaaacttg gattagagtt ttcccagata
     4381 agcctttgac aaaaaaacct ttagaaactc gtatgggtaa aggtaaaggt gctgttgaag
     4441 aatgggtaat gaatatcaag ccaggtcgta ttatttatga aatggcagga gtaagcgaag
     4501 aaatggcaag agaagcattg actttagcta tgcataaact tccatttaaa actaagtttg
     4561 ttacaagaga gagccaaaat gaaatatact gagattaaag ataaaacagc agctgagctt
     4621 gcaacaatgc taaaagaaaa aaaggtgctt ttattcactt taaaacaaaa gctaaaaaca
     4681 atgcaactta ctaatccaaa agagattagc caagtaaaaa aagacattgc tagaataaat
     4741 acagcaatta acgctttaag ataaggatag aaaatggcat ttaaaagaga aattcaaggc
     4801 gttgttgtta aaatcgctgg tgaaaaaacc gcaagtgttt tggttgaaag aaaagtggtt
     4861 catccaagat atagaaaaat tgttaaacgc tttaaaaaat atctaattca tgatgagaga
     4921 aatgaagtta aagtgggtga tactgttgtt gcagtagaat gcagaccact ttcaaaaaga
     4981 aaatcatttc gcttaaaatc tgtattagct acaggagttg agtaatgatt caaagtttta
     5041 caagacttgc agttgctgat aatagcggtg caaaagaatt aatgtgtatc aaggttttag
     5101 ggggtagcaa aagaagatac gctaccgtag gtgatgtaat cgttgcatct gttaaaaaag
     5161 ctttaccaaa tggaaaagtt aaaaaaggtc aagtggtaaa agcggttatc gttagaacta
     5221 aaaaagaaat tcatagagat aatggttctt tgattcgttt tgatgaaaat gctgcggtta
     5281 ttcttgacaa caaaagagag cctatcggaa ctcgtatctt tgggccagtg ggcagagaag
     5341 ttagatatgg tggctttatg aaaatcgttt cactagcacc ggaggtatta taatggcggt
     5401 taaattaaaa atcaaaaaag gtgatagcgt taaggttatc acaggcgatg ataaaggtaa
     5461 aacaggtaaa gttttagcgg tatatccaaa aacacttaaa gtggtagttg aaggatgtaa
     5521 aatcgctaaa aaagctatta agccgagtga gaaaaaccca aatggtggtt ttatcaataa
     5581 agaaatgcca atggatattt ccaatgtggc aaaagttcag gagtaagcga tgatgagatt
     5641 aaaagaaaaa tataatcaaa gcattaaacc tgcattggtt aaagaatttg atattaaaaa
     5701 tcctatgctt atccctgtga tcgaaaaagt agttatcagc gtaggtgctg gtgagttggc
     5761 taaagatcaa aaagtattgc aaaatgttgc agatactatt tctttaattg caggacaaaa
     5821 ggctgtgatt actaaagcta aaaaatcagt tgcaggattt aaagttcgcg aaggttttcc
     5881 tgtgggtgta atggtaactt taagaaaaga aaatatgtat gcttttcttg ataaattaat
     5941 ttctattgct ttgccaaggg tgaaagactt tagaggttta agtagagatg gttttgatgg
     6001 acgcggaaac tataacttcg gtcttgatga gcagttgatg ttcccagaag tggagtatga
     6061 taaaatttta agaactcatg gtatgaacat ttctatagtt acaacagcac aaaatgacaa
     6121 acaggcacaa aagttattag aacttatcgg tgtgccattt acaaaaggaa agtaagatgg
     6181 ctaaaaaatc aatgattgca aaagcggcac gcaagcctaa atttaaagtt agagcttata
     6241 caagatgcca aatttgtggg cgtccgcatt cggtttatag agattttgga atttgcagag
     6301 tttgcttaag aaaaatgggc aacgaaggtt tgattccagg tcttaagaaa gcaagttggt
     6361 aaggataaaa tatgataaat gatattattt cagattcact cactcgtatc agaaatgcag
     6421 gaatgagaaa gcttgaaaca accaagcttt tacattctaa agttgtagaa gctttagttg
     6481 gaatttttca agctaagggc tatattgaga gttttaatgt tattgaagaa gataaaaaga
     6541 aatttatcaa tgtagtttta aaatacgatg aaaaaggtaa gagtgttatc aatgagctta
     6601 aaagaatttc taagcctggt cgtcgtgttt ataaaggtaa agatgaaatc aagcgtttta
     6661 aaaatggtta tggtactatc gtagttagca caagtcatgg cgttttagct aatgatgaag
     6721 cttataaagc aggtgttggc ggcgaaattt tatgtaccat ttggtaaaaa atctgctttt
     6781 tatggcattg ggtatccatt cttttaaaaa agtagaaata tcctagacaa ataaaaagga
     6841 aaaatatgtc tcgtataggt aaacaaccga ttgctattcc agcaggagta gaagtaaaat
     6901 tagaaggaaa tttgcttaaa tttaaaaaag gaaatttagc aaaagaactt gatactaaag
     6961 caaatgtaaa tgttgagatt aaagataata atattctttt ttctccaaaa ggtgaagaca
     7021 gacaaagtag agcttattgg ggaacttaca gagctttagc ttacaatatc gttgtaggtt
     7081 taactcaagg tttttcaaaa actcttgaaa tcaatggagt tggttataaa gcagctttaa
     7141 aaggtaaagt tttagaacta agccttggtt tttctcatcc tattaattat gatattccag
     7201 aaggaattga aattgtagtg gataaaaata ctattgcagt taaaggaagt gataaacaag
     7261 ttgtaggtca agttgctgct caaattcgtg aatttagacc accagagcca tataaaggaa
     7321 aaggcgttaa gtattctgat gaacgcatta tccgcaaagc tggtaagaca tctaagaagt
     7381 aagggtagaa tatgagagca aatgtattaa aaagaaaact aactttaaga atcaaaagaa
     7441 aaaaaagaat tagagcgaaa atttcaggtt gtgaaaattt tccaagaatt tctgtattta
     7501 aatcaaacag aactctatat atccaagcga ttgatgatgt aaaagctgta actttagcag
     7561 cagttgatgg acgcaaactt ggcgttaaag caaataaaga aggtgctaaa aaaatcgctg
     7621 ctgaatttgc taaaacttta aaagctaaaa agatagaaca agctgttttt gatagaaatg
     7681 gttatgtata tcatggtgtt atcgcagcat tggctgaatc tttaagagaa aatggcatta
     7741 ggctataagg ggtaaatcga tggaaaaata taatagagaa gaatttgaag aagtaatcgt
     7801 cgatatcggc agagttacta aggttgttaa aggtggtaga agatttagat ttactgcttt
     7861 agttatcgtt ggaaaccgca aaggtttagt aggtgttggt tatggtaaag ctaaggaagt
     7921 tccagatgcc atccgtaaag ctgttgacga tgcgtttaaa aatatcgttg aagttaaaac
     7981 taaaggctca actatcgctc acgatgtaga ggtaaaatat aacgcaagta gaattttact
     8041 taaaccagct agtgaaggta caggagttat tgcaggtggt tctacacgcc ctatcgtgga
     8101 acttgcaggt attaaagaca tcttaaccaa gtctttgggt tcaaataatt cagctaatgt
     8161 ggttcgtgct acaatcaaag ctttaacaat gttaaaagga taagaagatg aatttaacaa
     8221 aagcagcggg ttcaacgcat aaaactaaaa gaattggccg tggtcaaggt tctggcatgg
     8281 gtaagactgc tactaaaggg ggtaaaggtc aaactgctag aaaaggttat aatgaaaaaa
     8341 gaggttttga agggggtcaa caaccacttc aaagaagact accaaaagta ggttttactt
     8401 ctaaaattca aaaaccttat gtgatcaatg ttgaaaaaat cacagctgta aaagagctta
     8461 gtgaaattac atttgagagc attaaaagtg ttcacaaaat ttcaaaatct gtgaataaaa
     8521 tcaaattaat tggtgcaagt gcaaaagact tagtatcaaa aatcaaagac gagaatatta
     8581 gcgtcaccgg atcaaaataa tgaatagagc attgacgaat aagattttaa tcaccttagc
     8641 atttttattt gcttataggg ttctggctta tgtgccagtt cctggcgtca atgctgatgt
     8701 gattgcggaa ttttttaata acaatcaaaa caatgctttg ggtttattta atgtttttag
     8761 tggtggagcg gctgaacgct tttctatcat ttctttaggt attatgcctt atatcactgc
     8821 ttctattatt atggagcttc ttgcagcaac ttttccaaat attggtaaga tgaaaaaaga
     8881 gcgtgatagt atgcaaaaat atatgcaaat tatccgttat gcgactattg tgattacttt
     8941 ggttcaaagt ataggcgttg ctataggttt gcaaagcttg cacggtcgtg gtggtgcagg
     9001 ggctataatg gtagaagatt taaatatgtt tatcgcactt tgtgctattt ctatgcttgc
     9061 aggaactatg cttttaatgt ggcttggcga acaaatcaca caaagaggta taggaaatgg
     9121 tatttcttta atcatttttg caggtattgt ttcaggtatt ccaagagcga tttcaggaac
     9181 tgtagggcaa atcaattcag gcgagatgaa tttcttgacc gcttttgcaa tttttgcttt
     9241 gattttaatc actataggcg tgattattta tgtagaactt ggagaaagaa gaattcctat
     9301 ttcttattct cgtaaagttg taatgcaaaa tcaaaacaaa cgcattatga attatattcc
     9361 tattaaactc aatcttagtg gggttattcc accgattttt gctagtgcga ttttgatgtt
     9421 tccaacaaca attttacaaa ctagtacaaa tccttatcta caagccatta atgacttttt
     9481 aaatccaaat ggttatttgt ttcatgtttt aactttcttg tttgtaattt tctttgctta
     9541 tttttatgct tctattgtat ttaacgctaa agatatagca gaaaatttga aaaaacaagg
     9601 cggttttatc cctggaattc gtccaggtga gggaacttca aattatctta acgaagtggc
     9661 ttctcgttta actttatcag gttctattta tttaggactt gttgcaacct tgccttgggt
     9721 tttggtgaaa tttatgggtg tgccttttca ttttggcggt acttccgtac ttattgtagt
     9781 tcaagtagca cttgatacga tgagaaaaat tgaagctcaa atttatatga gtaaatacca
     9841 aactttaagt gcggtaggtt tgtaatatat ttcaacaagg gtaattttcc ttgttgaaat
     9901 aattttttta ttttattctt tttcttgtat gttttatttt tgtcaaatgt gtaaataatc
     9961 tacaaaaatt taaattagct tttaaaattt ttctaatttt tttaaaaaaa tactaaaaat
    10021 atgtaatact aaaattagat ttgtttagga gaagccatga agaatacttt taaaaaagaa
    10081 ttttttcact ttgattttgc tttctttttg tggttctatt atttatggtt tgccttattt
    10141 tagaaagtat tattatgatg attatatggc tttgtatcat ttagataatt ttcaaatggg
    10201 tttattaggt agtgcttatg gtttgttagg acttttttct tatgctttgg gtggatattt
    10261 agcagatcgt tttgctccta agaagctttt gatcttttct ttggtgctac aggatgtggg
    10321 ggtttgcttc atctttattt tacttcgctt aaggctctta tgattattta tgggctttgg
    10381 ggtattactt cgcttcttac tttttggcct tctttgatga aaatcatacg cactttagcc
    10441 agcaagcaag agcaagcaag agcttatggg gtctttgaag ggggtcgtgg tgtggttagc
    10501 actatatatt tagctattgc tacggctatt tttggctatt tttaaaccaa ggctttagct
    10561 tctaagggta tagagatgat tatcattttt tattctttag ctctataatt agtgcagtga
    10621 ttttgtttct tttaaaagag agtaagcatg aaaaaagtga aaatttaaaa tggagtgatt
    10681 ttttatctct tattaaaaat cctgctttat ggcttgtggt ggccatcact ttttgtactt
    10741 attttttcaa tatgagtttt tattatttta ccccttatgc gagtaatgtt ataggtactt
    10801 ctgctgtatt tgcagctatt ttagcggttt taacctctta tatacgcccc attgtttcta
    10861 tagtaggtgg ttttgtagct gatggttttg gaaaggctaa ggttatgtta gtgggttttg
    10921 taaccatggg acttggagtg gtgcttttaa tgtttagtgc ttattggggt gttttataca
    10981 aatggtggct ttaaccttag cttgtgtgat tgtttatgtg gctatgtatt ctaattttag
    11041 tatttattat tctttattaa gcgagggtaa aattcctgta catttagctg gtatggccat
    11101 aggtatagtt tctacttttg gatatttgcc tgaagttttt gcacctgttt tagccggaga
    11161 tttgcttgat aaatatcaag gagtaaaggg ttttcatatc tattttagta tcatgattgc
    11221 tatggctatt atgggtgcta atttttgttt gttttggata aaaaaataca ataaaaaaag
    11281 gaaaaaaata tgaagaaaat aattaaagat tttaaattta aagtgaaagt gatagaaaat
    11341 atttggatta ctttaaagga tggcacaagg ctttcttcta gaatttggtt tccacaaacc
    11401 gatgagaaac ttcctgctat tttagaatac attccttata gaaaaaatga tggtacaaga
    11461 acaagagatg aacctatgca tggctatttt gcaggcaatg gttatgttgt tgtaagagtg
    11521 gatatgagag gcagtgggga atctgatggg ctcttaaaag atgagtattt aaagcaagaa
    11581 caagatgatg ccttagagct tatagaatgg atagccaaac aagaatggtg caatggtaaa
    11641 gtaggcatga tgggtaagtc ttggggtggt tttaattctt tgcaagtggc tgctagaaga
    11701 cctaagaatt taaaagccat tatagtggtg ggttttaccg atgatagata caatgaagat
    11761 atacattata aaggcgggtg tttgctcaat gataattttt ggtggggcaa tatcatgctt
    11821 gcttatcaag cccgttttgt agatccaaaa attgatccaa atggaagaga gaaatggctt
    11881 catagacttg aaaatatgcc tttatggcct gctttatgga tggaacataa tttaaaggat
    11941 aagtattgga aacatggctc ggtgagtgaa aattatgagg atatacaagt acctgttttt
    12001 gctttagatg gatgggctga ttcttatacc aatcctgttt ttactctcat gcaaggttta
    12061 aaggttccaa gaaaagccat tataggccct tgggctcatg tttatccgca cgatggtttt
    12121 ccagctcctg ctatgggatt tttacaagaa gctttaaaat ggtgggataa atggctaaaa
    12181 gatgaagata atgatgttct tgattgtcct atgatacaag cttatataga agatccttta
    12241 aaacctagtt ctaaagtgag tgaggttaaa gggcgttttg tgggattaga aagttatcct
    12301 agtaaggata taaattatca tacctatttt ttaaatcctt atagactcac tcaagaaaaa
    12361 agcaagcaaa gcattaagat taatacccca caaaatcatg gacttttagc tggagagtgg
    12421 atgggagcag tcgttttggg agaaagtcct gcagatcaaa gattagatga tggtttagct
    12481 gtggtttttg aaagtgaaat tttgcaagat gagtttgatg ttttaggtta tcccttgtta
    12541 aaagtgaaat taaatagcga taagcctaaa gctatgcttt ttgcacaact tagtgaagta
    12601 agggaagatg gctttgtaca aagggtgagc tatggggttt taaatttagc cttaaataaa
    12661 gaaagaagtg aatttacacc cttgataaaa aatgaatgga tccaaagaga gctaaggctt
    12721 gattgttgtg gatatcgttt tgctaaggga tctaagataa gactttcttt ggctacaacc
    12781 ttttggccta tgttttggct tatgcctgaa aatgtgacct tgactttgga tttaaatgaa
    12841 tgcgattttg ctttacctgt ttttagtggc aaggatagca ataaagtgaa tttagaagct
    12901 caaagtgctc ctttaactcc tcttactttg cttaaagaag gtagggtaga taggagtata
    12961 acttatgata ttttaagcga tacttacgct tgtataaccg atggagtggg tggagttttt
    13021 ggcgaaggta tttatagatt tgatgagatt gatgttttag tagaacacaa tcttaaaaga
    13081 gagctagtcc ttcaaaatga agatcctcta agtgctaaac acactatcac tcaaaagatg
    13141 aaaattggta gggaaaattg catgatggat gctgatatta ttcttactca aaccagtgat
    13201 aaggagtatt tttatatcaa gggtaaaatg caggttaagg aaaatgaaaa acttgtcttt
    13261 gataaaaatt ataattataa aactctacga aagagtttgt aaatcctaga taattaaacc
    13321 taaatttatc aggtttaatt aaaaattatg aagaatataa ttaattgaat taatttatcc
    13381 taggtttttg ctttaaaaat aaaaacacaa tgcacattat aaaaattact attgaccata
    13441 ttaaaaaagc atctacaaga cccatttgtc taacgatagg ttgagagata ataggactta
    13501 aaaattgtcc taaaaatata caacttgcta aaattccata agccctagcg cgagcatttt
    13561 caggacagat tgaaaaaaga taagccgtat tatttacaag cataatacct ccgcccattc
    13621 caagcaaagc taaggcgatt aaaactgtaa aaaagctatc tactaaaaaa agcagcaaaa
    13681 aagaacaaga tacgataaaa agagttaaaa catagatagt tttaatactt aagaatttta
    13741 taatatatct atagcttaga gagaaaaaac cataacatag tgcagataca gacatcgaaa
    13801 tacctatata tttaggatcc aatcctaaat gttcttctat atagtaagga agttgagttg
    13861 gcgaaatata ataaactacc atgataaaaa aacctataaa atagataggg aaaaattgcc
    13921 aataatttgt ttttgcttct atttttgtat gattatagaa tttaaatttt ctaggttcaa
    13981 aaagataaat gatagccatt aaggtaatta aaattccaag tccatatact aaaaaaggat
    14041 aacgccaaga ataactcgaa acaaatcctg caatagaaat aaaaacagca ccccctaccg
    14101 cacaaaaaaa tccttgaaga cttaaagcat tttctctgcg attaaagcca ccacgactat
    14161 aataatctcc aagtaaagcc gaagcgcctg tcattataaa agcagttgcc ataccaaaaa
    14221 tagctcttga agtcagtata gcataaatat catttaagaa aaagccactt actccagaaa
    14281 tagtccaaac caccatagct ggaagaatga attttaattt gccaaattta tccattaaaa
    14341 taccagcaaa tggagataaa atgacaacaa aaatagcagg gatggttaaa actaagcgaa
    14401 caagtatatc aagatgagct aatgtgaaac ttgaagcaag agtagcgcca ctttgggtta
    14461 aaagttcttc aaaatgtctg ttgatagcag gcagagcaga tgaaatgacc acgcttccta
    14521 gcatagtcat agcggccata gaaaacacag ccgctttaaa tccggacttt tcagtaattt
    14581 gaattatttt tttatccatt ttcgtgtcat ttggatgaaa tttataagtt ttgccattca
    14641 taatttttgc cttttttgtt ttattatact ctaaaaatta tggtttgtat ttaaaattac
    14701 ttaaaattat attttattta ttttgttatg atagttttgt ttttaaaata tttta
//
LOCUS       DAZBIH010000034        14287 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.034, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000034 DAZBIH010000000
VERSION     DAZBIH010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 14287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.034"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            39..1058
                     /locus_tag="ACHFOB_000864"
     CDS             39..1058
                     /locus_tag="ACHFOB_000864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799675.1"
                     /translation="MNLKIFSIIVGILIAVIVILGGTYYYLFEYSKPKNYTLNTNTYT
                     EQKSYTNNYDNSYSPSIQTNNSSSDININNNTIQKQETNPLDENQSLNNDTFNTSISE
                     NNQSLNNDTNTSNNINTNENKQILDTDKEKLKQENKQAKIEALKKEISKQQKILERER
                     AVKKELQSNKSNKNKYLNTAREYLSIGKNSRLEPELSTENMKVYVLDGKFLSQYRINL
                     LKDMLSVIQDNAKDYYLSVFVKMLPKGEMKLTIYNKEIIFSDMKKAYKYISLDRLSPY
                     LNNPKELNEHVAREEILERLKLQIKKDGKGSDFSKHIKSLKTGLNTAQYFFPFCEIIE
                     ISSIK"
     gene            1081..3693
                     /gene="valS"
                     /locus_tag="ACHFOB_000865"
     CDS             1081..3693
                     /gene="valS"
                     /locus_tag="ACHFOB_000865"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0004832 - valine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006438 - valyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HFN5799676.1"
                     /translation="MYDKNLEKEYYQICEERGYFEIDGNKTIQEKDKNFCIMMPPPNV
                     TGVLHIGHALTFTLQDIMTRYKRMDGYKVLYQPGLDHAGIATQNVVEKQLLAQGIKKE
                     ELGREKFIEKVWEWKEQSGGKILDQMRTLGITPAWSRLRFTMDEGLVNAVKKAFVELY
                     DKRLIVRGNYMINWCTHDGALSDIEVEYKENKGKLYHIKYFLKDSDEFLVVATTRPET
                     FFGDTAVMVHPDDERYTKFVDKEVILPISKKAIKIIADEHVEKEFGTGVVKVTPAHDM
                     NDYEVGLRHNLDFISVFDEKGILNEHCLEFQGLERLEAREKIVAKLESLGFIEKIEEH
                     NNQIGYCYRCNNIVEPYISKQWFVKKEIAQESIEKVALGESKFYPNHWINSFNAWMKD
                     LRDWCISRQLWWGHQIPVYYCECSHEWASQHTPKTCPKCQSQNFKQDEDVLDTWFSSG
                     LWAMSTLGWGNENWGKDKIWSEKDLKDFYPNSLLITGFDILFFWVARMMFQSTNALHQ
                     LPFKDIYLHALVKDEQGRKMSKSLGNVIDPNESIKEYSADILRFTLALLAIQGRDIKL
                     SNDKLLQVRNFTNKIYNATNYLLLNESKFEDLENITLHSELAKYIYAKFQTCVKDVRE
                     NLDNYRFNDAANTLYKFFWDDFCDWGIELSKAEKSSVKELGSIFKEALKLLNPFMPFI
                     SEYLYHKLSDTELKTSPSIMISKYPKFKEQDKNIEKIFSLLIESIVGIRRAKSLIDLG
                     NSKIEKAYIKFNDKKIKDEIKAYMNFIMMLAKCEQIEFSEEKLPKAICDVSENLEIFI
                     TLENVDLSGILTRLENQKNKLEKESFKLNSMLSNEKFIANAPKEVVEQNKEALENLKI
                     QLEKISVELQNLRG"
     gene            3698..4708
                     /locus_tag="ACHFOB_000866"
     CDS             3698..4708
                     /locus_tag="ACHFOB_000866"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HFN5799677.1"
                     /translation="MIKIKNLKKYYGKELVINDVSLEIKKGEIYAIVGHSGAGKSTLL
                     RCINGLENYQEGSLKVFDQEIKDLSQKKSKELRVLRKDIGMIFQNFALMERKNVFENV
                     AMPLRTHYTQCKFHAKLFNKEYMSEKEIAQKVNSLLEIVGLDHKNKSYPRELSGGQKQ
                     RVAIARALALNPKILLSDEATSALDPNTTKNILELISKINAEFGITVVLVTHEMDVVK
                     DIAQKALLLEHGQIIGSGAIDELFLRPNAKMKEFLGESDFLPEHGLNIKLYFPKEVAQ
                     NSVITHMARTLNIDFNIVWGKIEKLNGKALGNLVININENDKDKVLDYIEKSGVLWEV
                     AS"
     gene            4705..5616
                     /locus_tag="ACHFOB_000867"
     CDS             4705..5616
                     /locus_tag="ACHFOB_000867"
                     /EC_number="7.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0033232 - ABC-type D-methionine
                     transporter activity [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0048473 - D-methionine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter permease"
                     /protein_id="HFN5799678.1"
                     /translation="MNEENISIISAFFGRIFQFFNEFSWQDIKEVSLSSITSFSENYE
                     NILKPALNETIYMSLMAVLFGFLLAIIPGILLAIWDKNGIKENKIAYSILDFITNILR
                     AFPFLILIVVLLPLSKIIVGTSIGTNAAIVPLAIGIAPYLAKMLESAFKEIDKGIIEA
                     AKSYGASNIQIIFKVIFSEALPAIISGITLTLIFTIGFSALAGTVGGGGLGDVAIRYG
                     YERFNKEVMIQTVVILLILVQLVQILGNLFYTWAKNSKTTYIIATLLILLGISIVINI
                     NNDENFFWQVIVFILFLGSLLYKGFKK"
     gene            5808..6581
                     /locus_tag="ACHFOB_000868"
     CDS             5808..6581
                     /locus_tag="ACHFOB_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN5799679.1"
                     /translation="MKIKSLFIASILTLSLNANALETITVAATPVPHAEILEQVKPDL
                     EKQGYKLEIKEFTDYVLPNLAVDNGEADANFFQHTPYLEEFNKNKGTKLIKVAAIHIE
                     PMAVYSKKYKSLDDIKEGVKIAIPNDPTNESRALDIIAKKGLVKFKDKALKTPLDIID
                     NPKKIKFVELKPAQLPRALDDVDFAVINSNYALSANLNPAKDSVFIEDKESPYANILV
                     VRVGHENDPKIKALTQVLQSDKIKQFIIEKYNGSVLPAF"
     gene            6630..7400
                     /locus_tag="ACHFOB_000869"
     CDS             6630..7400
                     /locus_tag="ACHFOB_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN5799680.1"
                     /translation="MNLFKIIILACILNLSSLFAQNITIGATPNPFGSLLELMKDDFK
                     NKGYELKIVEFSDYILPNRALEEKELDANLYQHKPFLEEYNLKKGSNLIATTPVLIAP
                     VGVYSKKIKNLENLKEGARVAIPNDATNESRALELLEKAKLIELNKNTLKTPLDINKN
                     PKKLKFIELKAAQLPRALDDVDIAIINSNFALGAGLNPSKDTIFREDKNSPYVNYVVV
                     RSEDKNSEKTKVIDEILRSDKFKAIINEHYKDILIPAF"
     gene            7410..8186
                     /locus_tag="ACHFOB_000870"
     CDS             7410..8186
                     /locus_tag="ACHFOB_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN5799681.1"
                     /translation="MNIKKIFLSVLFTISLSFGADKTIIIGATPTPYAEILNFSKPLF
                     QEKGWKLIVKEFNDYNIPNIALNEKDLDANLYQHKPFLDDFNTHKGTNLNSLGAIVLV
                     PMAIYSNSIKDIKDIPNGAKIAIPNDATNESRALDLLAKANLIEFKSQSTLKTPIDIS
                     KNPKKLKFIELKAAQLPRALNDTDLAVITTNYALGAGLNPLKDGIFMEDKDSLYAIVL
                     ATRKGEETSQKSLVIKEILTSDKIKNFIIEKYKGSVIPTF"
     gene            8270..8932
                     /gene="flgA"
                     /locus_tag="ACHFOB_000871"
     CDS             8270..8932
                     /gene="flgA"
                     /locus_tag="ACHFOB_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring formation chaperone
                     FlgA"
                     /protein_id="HFN5799682.1"
                     /translation="MKIIFLTFFIVINYIQAASLEEIKTALAKEFRNNFPKIIISQID
                     LKTTSLPKDFDQYEFLRIANGRFNQAQGFLRAEFKTPQNIQKNVFFRYFIQANLEVLK
                     SERAIKRGDKLGAFDYKSVLIDFDKVPLNALTLDDVDNLVAKSNINKNAILRANMFKT
                     TALIRRNDPIIGVLSEANVDVLIELVALQSANMGERIRAKNKEGKVMQGIVVGKNRMI
                     IQ"
     gene            8929..9492
                     /locus_tag="ACHFOB_000872"
     CDS             8929..9492
                     /locus_tag="ACHFOB_000872"
                     /EC_number="2.5.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_function: GO:0106141 - flavin prenyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HFN5799683.1"
                     /translation="MKVLLGISGSSSVNLGLKLLKNLENQCELYCILTQGAKLSFKAE
                     NRANLEEICQENFKYTHFLDDKNLSLSVASGSFGIEKTIIAPCSISSLAKIHAGFADT
                     LLMRAAAVALKERKKLILGVREMPFSTLNLEHMLKLSQIGVIIAPPIIASYSKANNLE
                     QMENFIVGKWLDLLEIKHNLYEKWQNF"
     gene            9532..10008
                     /gene="coaD"
                     /locus_tag="ACHFOB_000873"
     CDS             9532..10008
                     /gene="coaD"
                     /locus_tag="ACHFOB_000873"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004595 - pantetheine-phosphate
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HFN5799684.1"
                     /translation="MTCLYPGTFDPITNGHLDVIKRALKIFDEVIVAIAKSEHKKPCY
                     DLEKRKELALLATQNLKNVKIIAFDNLLVDLAKELKVNTIIRGLRAVSDFEYELQIGY
                     ANHALWEDMETIYLMPSLKHAFISSSIVRSIVAHGGDVSSLVPKEILPFLKDQSCM"
     gene            9999..10577
                     /gene="tmk"
                     /locus_tag="ACHFOB_000874"
     CDS             9999..10577
                     /gene="tmk"
                     /locus_tag="ACHFOB_000874"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004798 - thymidylate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006233 - dTDP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HFN5799685.1"
                     /translation="MYVVFEGIDCVGKSTQISLLKEIYKDAIFTLEPGGTELGKHLRE
                     ILLNKTHPINKRAELLLFLADRAQHFEEILKINQNKLIISDRSFISGMAYAKDFENDL
                     LFALNSFALENFFPQKIIFLKGDANLIQERLSQKELDSIEKRGIEYFLSVQDKLEKVL
                     HFLKEKISIEILTLDAKESKEKLHQQIKEFLQ"
     gene            10574..11800
                     /gene="hisS"
                     /locus_tag="ACHFOB_000875"
     CDS             10574..11800
                     /gene="hisS"
                     /locus_tag="ACHFOB_000875"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HFN5799686.1"
                     /translation="MINALKGMKDLLDKDAYCYEKVIKTCEEVAKNYGFTFINTPHLE
                     LCTLFKRSVGESSDIVGKEMYEFIDKGENHVCMRPEGTAGVVRAYIEKKLDKNTSVKR
                     WFYHGSMFRYERPQKGRLREFHQFGVESFGNASVYEDASIILMLVEIFSRLDIKFKLL
                     INSLGCLKCMPKYRENLIHFLDSKEGFCEDCLRRKNLNPIRVLDCKNEHCQSLLNDAP
                     LLNQNLCSSCQKDFEILQSVLKENGVDFEVDSKLVRGLDYYSKTAFEFISDEIGAKAA
                     IAGGGRYDRLIEYLDGKSGFGVGFAMGIERIIAILEQKEEKVQREGIYLCAMDEIYIQ
                     KLLHIATNLRKEHKVLLSYEARKLAKHLENADKNNAEIFLCMGENEAQNESLFYKNLA
                     KKEEKMIKISDLKKVL"
     gene            11797..13632
                     /gene="speA"
                     /locus_tag="ACHFOB_000876"
     CDS             11797..13632
                     /gene="speA"
                     /locus_tag="ACHFOB_000876"
                     /EC_number="4.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008792 - arginine decarboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006527 - arginine catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic arginine decarboxylase"
                     /protein_id="HFN5799687.1"
                     /translation="MMDYGIDIWGNENFIIKNGKVCINHEKKPAIIDIVKELRDDGYK
                     GPLLLRFPHLIQKQIENIYGNFNKARKEFGYKGGFNAVYPLKVNQYPGFVKNLVKLGK
                     DYNYGLEAGSKAELLLAMAYNNEGAPITVNGFKDRELINIGFIAAEMGHNITLTIEGL
                     NELEAIIDIAKERFKPKPNIGLRVRLHSAGVGIWAKSGGINSKFGLTSTELIEAVNLL
                     KENKLLEQFTMIHFHLGSQITEIHPLKKALNEAGNIYTELRKMGAKNLKAINLGGGLA
                     VEYSQFKNEKSRNYTLREYANDVVFILKNIAEQKKDLEPDIFIESGRFVAANHAVLIA
                     PVLELFSQEYAENKLILKKQNPKLIDELYDLYKSIKPSNALEYLHDSIDHLESILTLF
                     DLGYVDLQDRSNAEILTHLITKKAILLLGDKQNPADLLAIQDEVQERYLVNFSLFQSI
                     PDFWGLEQNFPIMPLDRLDEEPTRSASIWDITCDSDGEISYSKDQPLFLHDVDVEKEN
                     YFLGFFLVGAYQEVLGMKHNLFTHPTEAIISINEKGYEVEGIIEAQSILDALEDLDYD
                     IHAIMDILNERISNSKLVNDKQKKHILGELYLFLNDNGYLKSIGV"
     gene            13633..14271
                     /gene="cysE"
                     /locus_tag="ACHFOB_000877"
     CDS             13633..14271
                     /gene="cysE"
                     /locus_tag="ACHFOB_000877"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0009001 - serine O-acetyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HFN5799688.1"
                     /translation="MNFWGIIKEDFSQPKAQDPAFNSCIELFFNYPGVWAVVNYRFAH
                     FFYIRNFKRIARMISGISQFLTGVDLHPGAELGRRVFIDHANGVVIGQTAIIEDDVLI
                     YQGVTLGGTSLEKGTKRHPTIKKGVIIGSGAKVLGNITIGENAKIGSNAVVVKDVGAN
                     LTAVGIPAYIIEERKNKNIRAIDANCDDKLEKLEKKILELENLILKQLESQK"
BASE COUNT         5476 a         2012 c         2392 g         4407 t
ORIGIN      
        1 ctaaaattat ttaactttct gtttttaagg gatagcaaat gaatttgaaa attttttcta
       61 ttattgttgg catattaatt gctgttattg tgatattagg tggaacatat tattatcttt
      121 ttgaatattc aaaaccaaaa aattacacct taaataccaa cacttacacc gaacaaaaat
      181 cgtataccaa taactacgat aattcctatt caccttcgat ccaaaccaac aatagttcat
      241 cagatataaa tattaataac aataccatcc aaaagcaaga aacaaaccca ttagatgaaa
      301 atcaaagctt aaataacgat acatttaata catcaataag cgaaaacaat caaagcttaa
      361 ataatgacac caatacaagt aataatatta atacaaatga aaataagcaa attttagata
      421 cggataaaga aaaattaaaa caagaaaata aacaagccaa aatagaagct cttaaaaaag
      481 aaatcagcaa acaacaaaag atcttagaaa gagaaagagc tgtaaaaaaa gaacttcaat
      541 caaacaaatc aaacaaaaat aaatatctaa ataccgctag agagtatcta agcataggaa
      601 aaaacagtcg tttagaacct gaacttagca cagaaaatat gaaagtttat gttttagatg
      661 gaaaattttt aagccaatac agaatcaatc tgttaaaaga tatgctaagc gttatacaag
      721 ataatgcaaa agattattat ctaagtgttt ttgttaaaat gctaccaaaa ggggaaatga
      781 aattaactat ctataacaaa gaaattatct tttcagatat gaaaaaagct tataaatata
      841 ttagtttaga tagattaagc ccatatttaa acaatccaaa agaattaaat gaacatgtag
      901 cacgtgaaga aattttagaa aggcttaaac ttcaaattaa aaaagatggc aaaggaagtg
      961 atttttctaa acatatcaaa agtttgaaaa ctggacttaa tacagcacaa tatttcttcc
     1021 cgttttgtga aattatagaa attagctcta ttaaataagc taaaacaata aaggcaaata
     1081 atgtatgata aaaatttaga aaaagagtat tatcaaattt gcgaagaacg cggatatttt
     1141 gagatcgatg gcaataaaac catacaagaa aaagataaaa atttctgcat tatgatgcct
     1201 cctcctaatg tcactggagt tttacacata ggacatgctt taacttttac tctgcaagat
     1261 attatgacgc gttacaaaag aatggacggt tataaggttc tttatcaacc aggacttgat
     1321 cacgcaggta ttgccactca aaatgttgta gaaaaacaac tccttgctca aggcattaaa
     1381 aaagaagaac taggtagaga gaaatttata gaaaaagtct gggagtggaa agagcaaagc
     1441 ggtggaaaaa ttttagacca aatgagaaca ctaggcatca ctcctgcatg gagtcgcttg
     1501 cgttttacta tggatgaagg tttggttaat gccgtaaaaa aagcctttgt ggaactttat
     1561 gataaaagac ttattgtacg tggaaactac atgataaatt ggtgtactca cgatggcgct
     1621 ttaagtgata tagaagttga atacaaagaa aacaaaggaa aactttatca tattaaatac
     1681 tttttaaaag atagcgatga atttttagta gtagccacaa cgcgtcctga aacttttttt
     1741 ggcgatactg cggttatggt gcatcctgat gatgaacgct atactaaatt tgtggacaaa
     1801 gaagtgattt tgcctataag caaaaaagcc attaaaatca tagccgatga acatgtagaa
     1861 aaagaatttg gaacaggagt tgtaaaagtt actcccgctc atgacatgaa cgattatgaa
     1921 gtaggactta gacataattt agattttata agtgtttttg atgaaaaagg aattttaaac
     1981 gagcattgtt tagagtttca aggtttagaa cgcttagaag caagagaaaa aatcgtagcc
     2041 aaacttgaaa gtcttggttt tatagaaaaa atagaagagc ataacaatca aataggatat
     2101 tgttatcgtt gcaacaatat agttgaacct tatatctcca aacaatggtt tgtaaaaaaa
     2161 gaaatcgccc aagaaagtat agaaaaagtt gcgcttggag aaagtaaatt ttacccaaat
     2221 cactggataa atagctttaa tgcctggatg aaagatttaa gagattggtg tatttcaaga
     2281 caactttggt gggggcatca aattcctgtg tattattgcg aatgctctca tgaatgggca
     2341 agccaacata cgcctaaaac ttgtccaaaa tgtcaaagtc aaaatttcaa acaagatgaa
     2401 gatgtgcttg atacttggtt ttcttcagga ctttgggcta tgagcacttt aggctggggg
     2461 aatgaaaatt ggggtaaaga taaaatttgg tctgaaaagg atttaaaaga tttttatccc
     2521 aattctttac tcattacagg ttttgatatt ttatttttct gggtggctag aatgatgttt
     2581 caaagcacta atgccttaca tcaacttcct tttaaagata tttatttaca tgctcttgtg
     2641 aaagatgagc aaggtagaaa aatgagcaaa agccttggaa atgtcatcga tccaaatgaa
     2701 agcattaaag aatatagtgc tgatatttta cgctttactt tagcacttct tgctatacaa
     2761 ggacgcgata ttaaacttag caatgataaa cttttacaag ttagaaattt tacaaataaa
     2821 atttataatg ctacaaatta tctgctttta aatgaaagta aatttgaaga tttggaaaat
     2881 atcacacttc attcagaatt agcaaaatat atttatgcca aatttcaaac ttgtgttaag
     2941 gatgtaagag aaaatttaga caattatcgc tttaatgatg cagctaatac tctatataaa
     3001 ttcttttggg atgatttttg cgattggggt atagagctta gcaaagccga aaaatcaagc
     3061 gttaaagaac ttggtagtat tttcaaagaa gctttaaaac ttttaaatcc tttcatgcct
     3121 tttatcagcg agtatttata ccacaaacta agcgatacag aacttaaaac aagcccttct
     3181 attatgataa gcaaatatcc aaaatttaaa gaacaagata aaaatataga aaaaatcttt
     3241 tctttgctca tagaaagcat agttggtatc cgccgtgcta aaagtttaat cgatcttgga
     3301 aattctaaaa tagaaaaagc ttatatcaaa tttaacgata aaaaaatcaa agatgaaatc
     3361 aaagcttata tgaattttat catgatgctc gcaaagtgcg agcaaataga atttagtgaa
     3421 gaaaaattac caaaggcaat atgtgatgtt agcgagaatt tagaaatttt tattacgctt
     3481 gaaaatgttg atttaagtgg tattttaaca agacttgaaa atcaaaaaaa taagcttgaa
     3541 aaagaaagtt tcaagcttaa ctccatgctt tcaaatgaaa aattcatcgc taacgcacct
     3601 aaagaggtgg tggagcaaaa taaagaagcc ctagaaaatt taaaaattca acttgaaaaa
     3661 atatcagttg aacttcaaaa tctaagaggt taaaaatttg ataaaaataa aaaatttaaa
     3721 aaaatattat ggcaaggaac tcgtgataaa cgatgtttct ttggagatta aaaagggtga
     3781 aatttacgcc atagtaggtc atagtggagc tggaaaatcc actcttttaa gatgtatcaa
     3841 tggacttgag aattatcaag aaggaagctt aaaagtcttt gatcaggaaa ttaaagattt
     3901 aagtcaaaaa aaatcaaaag agctaagagt gcttagaaaa gatataggga tgatttttca
     3961 aaattttgcc ctaatggagc gcaaaaatgt atttgaaaat gttgctatgc ctttaagaac
     4021 acactatact cagtgtaaat ttcatgccaa gctttttaat aaagaataca tgagcgaaaa
     4081 agaaattgcc caaaaagtca attccttact tgaaatcgta ggacttgatc ataaaaacaa
     4141 atcctatcca agagaactga gtgggggaca aaaacaacgc gttgctattg ctagagcctt
     4201 agctttaaac ccaaaaattt tacttagtga cgaagctact tcggctcttg atccaaacac
     4261 tacaaaaaat attttagagc ttatatctaa aatcaatgct gaatttggga ttactgttgt
     4321 tttagtaact cacgaaatgg atgtagtaaa agacatagct caaaaagctt tattacttga
     4381 acatgggcaa atcataggaa gtggagcaat tgatgagctt tttttaaggc ctaatgccaa
     4441 aatgaaagaa tttttaggag aaagtgactt cttgcctgag cacggactta atatcaaact
     4501 ttactttcca aaagaagttg cccaaaatag cgtcatcact catatggcaa gaactctaaa
     4561 tatagacttt aacatagttt ggggtaaaat agaaaaactt aatggaaaag ccttgggaaa
     4621 tttagttata aatataaatg aaaacgataa agacaaggtt cttgattaca tagaaaaaag
     4681 tggagtatta tgggaggtgg catcatgaat gaagaaaaca tctctatcat cagtgctttt
     4741 tttggtagaa tttttcaatt ttttaatgaa ttttcttggc aggatattaa agaagtgagt
     4801 ttaagttcta tcacaagttt cagtgaaaat tatgagaaca ttttaaaacc tgcgcttaat
     4861 gaaacaattt atatgagttt aatggctgta ctatttggat ttttattggc tatcattcct
     4921 ggaattttac ttgctatttg ggataaaaac ggaattaaag aaaataaaat cgcttatagc
     4981 attttagatt ttattacaaa tatactgcgt gcctttccat ttttaattct tatagttgtt
     5041 cttttaccac tttctaaaat catagtaggc acaagcatag gtacaaatgc tgccatagtt
     5101 cctttagcta tcggaatagc tccttatttg gcaaagatgc ttgaaagcgc ttttaaagaa
     5161 atagacaaag gaatcataga agcagcaaaa agttatggtg ctagcaatat tcaaattatc
     5221 ttcaaggtta tctttagtga ggcccttcct gctataatta gcggaattac cctaactttg
     5281 atctttacca ttggtttttc tgctcttgct ggaactgtcg gtggtggagg tttgggagat
     5341 gtcgctattc gctatggtta tgaaagattt aacaaagaag ttatgattca aactgtagtt
     5401 attttactta tattagttca gttagttcaa attctaggta atttatttta tacttgggct
     5461 aaaaatagta aaactacata tattattgcc actctattga ttttacttgg aattagcata
     5521 gttatcaata taaacaatga tgaaaatttc ttttggcaag taattgtttt tatcttattt
     5581 ttgggaagtt tactttataa aggtttcaaa aaataaggag attatatctc cttttaagat
     5641 aaatataagt ttttttaagt aaaatttaaa caaaaaatta aaggaattaa aatgatgtat
     5701 cagatgcgtt aatctgacta tcaacaagtt tttatatgct tcttcctgat agtcagagtg
     5761 aatttattaa gattaaagca agcacaaaat gactaaaaag gaaaaaaatg aaaatcaaat
     5821 ctttatttat agcaagtatt ttaacattaa gtcttaatgc aaatgcatta gaaaccatca
     5881 cagttgcagc aactcccgtc cctcatgctg aaatcctaga gcaagtaaaa cctgatttag
     5941 aaaaacaagg ctataaactt gaaatcaaag aatttacgga ttatgtttta cctaatctag
     6001 ctgttgataa cggagaagcc gatgcaaatt ttttccaaca tactccttat ttggaagaat
     6061 ttaataaaaa caaaggcacc aaacttatca aagtagctgc catacacata gaacctatgg
     6121 ctgtttactc caagaaatat aaaagtctag atgatattaa agaaggggtt aaaatcgcca
     6181 ttccaaatga tccaaccaat gaaagtagag ctttagatat tattgcaaaa aaaggtttgg
     6241 taaaatttaa agataaggct ttaaaaacac ctcttgatat tatagacaat cctaaaaaaa
     6301 ttaaatttgt agaattaaag cccgcacaac ttccaagagc tttagatgat gttgattttg
     6361 ctgtaattaa ttccaactac gctctctctg caaatctaaa tcctgcaaaa gatagcgtat
     6421 ttatcgaaga taaagaaagt ccgtatgcaa acattcttgt tgtaagagtg ggacatgaaa
     6481 acgatccaaa aatcaaagcc ttaacccaag ttctacaaag tgataaaatt aaacaattta
     6541 tcatagaaaa atacaacgga tctgttttac ctgcttttta attttatccc ttacctaggg
     6601 acttttttct taaacacaaa ggagttttta tgaatttatt taaaattatt atactcgctt
     6661 gcattctaaa tttatctagt ctatttgcac aaaacattac tataggagcc actccaaatc
     6721 cttttggtag cttactagaa ctaatgaaag atgattttaa aaacaaaggg tatgagctta
     6781 aaatagtaga attttcagac tatattttgc ccaatcgtgc attagaggaa aaagaacttg
     6841 atgcaaattt atatcaacac aaaccttttt tagaagaata caacctaaag aaaggttcaa
     6901 atttaattgc aacaacgcct gtacttatag ctccagtagg agtttatagt aaaaaaatca
     6961 aaaatttaga aaatcttaaa gaaggtgcta gagttgctat acctaatgat gccaccaatg
     7021 aaagtagagc tttagagctt ttagagaaag caaaattaat agagcttaac aaaaatactc
     7081 taaaaacccc attggacata aacaaaaatc caaaaaaact taaatttata gagcttaaag
     7141 ctgcacaact tccaagagct ttagatgatg ttgatattgc tataattaat tctaatttcg
     7201 cacttggagc cggtctgaat ccaagtaaag atactatttt tagggaagat aaaaatagcc
     7261 cttatgtaaa ttatgttgtg gtacgctcag aagataaaaa tagcgaaaag accaaagtaa
     7321 ttgatgaaat tttaagaagc gataaattta aagccatcat taatgaacat tataaagata
     7381 tattaatccc agctttttag gagtatagca tgaatattaa aaaaatattt ttaagtgttt
     7441 tatttacaat tagccttagt tttggagcag ataaaaccat aatcataggt gcaacaccaa
     7501 cgccttatgc tgaaatttta aatttctcca aacccttatt tcaagaaaaa ggctggaagt
     7561 taatagttaa ggaatttaat gactataata tacctaatat cgctttaaat gaaaaagatt
     7621 tagatgcaaa tttatatcag cataaacctt ttttagatga ttttaatacc cacaaaggaa
     7681 caaatttaaa ttctttaggt gctattgttt tagttcctat ggctatatat tctaactcca
     7741 taaaagatat aaaagatatt cctaatggtg ctaaaatcgc tatacctaat gatgctacca
     7801 atgaaagcag agctcttgat ttactagcta aagcaaattt aatagagttt aaaagtcaaa
     7861 gcacccttaa aacccctatt gacataagta aaaatccaaa aaaacttaaa tttatagagc
     7921 ttaaagccgc tcaacttcca agagccctaa atgatactga tttggctgtt attaccacaa
     7981 actatgctct tggagcaggt ttaaaccctt taaaagatgg tatttttatg gaagataaag
     8041 atagtttata tgctattgtt ttagctacaa gaaaaggtga agaaacaagt caaaaaagtc
     8101 ttgttattaa agaaatttta acaagcgata aaattaaaaa ttttatcata gaaaaatata
     8161 aaggctctgt tatccctact ttttaactct atacaaagcc ttctaaaggc tttgttaaac
     8221 ttataaaagc taaaatacta tttattgcat tataattctt aggataaaaa tgaaaattat
     8281 ttttttaact ttttttattg tgataaatta tatccaagca gctagtttag aagaaatcaa
     8341 aacagcacta gctaaagaat ttagaaataa tttccctaaa attataattt ctcaaattga
     8401 tttaaaaaca acatcactgc ctaaagattt tgatcaatat gaatttctaa gaatcgctaa
     8461 tggacgtttt aatcaagcac aaggcttttt aagggctgaa tttaaaactc cgcaaaatat
     8521 acaaaaaaat gtatttttta gatatttcat tcaagcaaat ttagaagttt tgaaaagcga
     8581 acgcgctata aaaagaggag ataaacttgg agcttttgac tataaaagcg tattgattga
     8641 ttttgataaa gttcctttaa atgccttaac cttagatgat gtagataatc ttgtagctaa
     8701 aagcaatatt aacaaaaacg ctattttaag agcaaatatg tttaaaacca cagctttaat
     8761 acgccgaaat gatcctataa taggggtttt aagcgaagca aatgttgatg ttttaatcga
     8821 acttgtggct ttgcaaagtg caaatatggg cgaaaggatt cgtgcaaaaa acaaagaagg
     8881 taaagttatg caaggcatcg tagtgggtaa aaataggatg attatacaat gaaggtttta
     8941 ttaggaattt ctggttcaag cagtgtcaat ttaggcttaa aattattaaa aaatttagaa
     9001 aatcaatgcg aactttattg tattttaacc caaggtgcta aacttagctt caaagccgaa
     9061 aatcgagcaa atttagaaga aatttgtcaa gaaaatttta aatatactca ttttttagat
     9121 gataaaaatt taagtctaag tgtagcaagt ggatcttttg gaatagaaaa aactatcatt
     9181 gctccttgtt cgatttcaag tttagcaaaa attcacgctg gttttgcaga cactctttta
     9241 atgcgtgctg cagcagtagc cctaaaagaa agaaaaaaac tcatcttagg agtacgtgaa
     9301 atgccttttt ctactttaaa tttagaacat atgttaaaac ttagccaaat aggagttatc
     9361 atcgcacctc ctattatcgc aagctattct aaagcaaaca atctagagca aatggaaaat
     9421 tttatcgtag gcaaatggtt agatctttta gaaataaaac acaatttata tgaaaaatgg
     9481 caaaattttt agtttaaatt tgttatattt ttaaaaaaaa ttggagcaaa aatgacttgt
     9541 ttatatcctg ggacttttga tcctattacc aacgggcatt tagatgttat aaaacgggct
     9601 ttaaaaattt ttgatgaagt catcgttgcc atagcaaaaa gtgaacataa aaaaccttgc
     9661 tatgatttag aaaaacgcaa agaactagcc ctgcttgcaa cacaaaattt aaaaaatgtt
     9721 aaaatcattg cttttgataa tttgcttgta gatttagcca aagaattaaa agttaatact
     9781 ataatccgtg gacttagagc agtgagtgat tttgaatacg aattgcaaat tggctatgca
     9841 aatcacgcac tttgggaaga tatggaaacc atttatctta tgccaagtct aaaacatgct
     9901 tttatttcaa gttctattgt tcgctctata gtagcacatg gaggcgatgt aagttctctt
     9961 gttccaaaag aaattctacc ttttttaaag gatcaatctt gtatgtagtt tttgaaggta
    10021 ttgactgcgt aggaaaaagt acgcaaattt cacttttaaa agaaatttac aaagacgcca
    10081 ttttcacact cgaacctggc ggaacagaac ttggaaaaca tttaagagaa attttactta
    10141 ataaaactca tcctattaac aaaagagctg aactcttgct ttttttagct gatcgtgctc
    10201 aacattttga agaaatctta aaaatcaatc aaaacaaact cattattagc gatagaagtt
    10261 ttatttcagg catggcttat gccaaagatt ttgaaaacga tttgcttttt gctttaaata
    10321 gttttgcttt agaaaatttt tttccacaaa aaattatctt tttaaaagga gatgcaaacc
    10381 ttatccaaga acgcctcagt caaaaagaac tagatagcat agaaaaacgt ggcattgagt
    10441 attttttaag tgtgcaagat aaactcgaaa aagtgcttca ttttttaaaa gaaaaaattt
    10501 ctatagaaat tttaacactt gacgcaaaag aaagtaaaga aaaattacac caacaaataa
    10561 aggaattttt acaatgatta acgctttaaa aggaatgaaa gatttattag ataaagatgc
    10621 atattgttat gaaaaagtga ttaaaacctg cgaagaagta gctaaaaact atggctttac
    10681 ttttatcaat acaccgcatt tagaactttg cacccttttt aaaagaagcg taggagaaag
    10741 ttctgatata gtaggcaaag aaatgtatga atttatcgat aaaggcgaaa atcatgtttg
    10801 catgcgtcct gaaggaactg ctggggtggt gcgtgcctat atagaaaaaa aactcgataa
    10861 aaacactagt gtgaaaagat ggttttatca tggttctatg ttccgctatg aaagacccca
    10921 aaagggacgc ttaagagaat ttcatcaatt tggcgttgaa agttttggaa acgcaagcgt
    10981 ttatgaagat gcaagtatta ttttaatgtt agtagaaatt ttttcacgct tggatattaa
    11041 atttaaatta ctgattaact ctttaggctg tttaaaatgt atgccaaaat atcgtgaaaa
    11101 tttaatacat tttttagata gcaaagaagg tttttgcgag gattgtttgc gtagaaaaaa
    11161 cttaaatcct attcgtgttt tagactgtaa aaatgaacat tgccaaagct tacttaacga
    11221 tgctccgctt ttaaatcaaa atttatgctc atcttgtcaa aaagactttg aaattttaca
    11281 aagcgtttta aaagaaaatg gagtggattt tgaagtggat tctaagcttg ttagagggct
    11341 tgattactac tctaaaacgg cttttgaatt cattagcgat gaaattggtg caaaagctgc
    11401 tattgctggg ggcggaagat atgatagact tattgaatat cttgatggaa aaagtggttt
    11461 tggtgtaggt tttgccatgg gtatagaaag aattatagcc attttagaac aaaaagaaga
    11521 aaaagtccaa agagaaggaa tttatctttg tgctatggat gaaatttata tccaaaaact
    11581 tttgcatatc gctacaaatt taagaaaaga acataaagtg cttttaagct atgaagcaag
    11641 aaaactagct aaacatctcg aaaacgcgga taaaaataat gctgaaattt ttctttgtat
    11701 gggagaaaat gaagcacaaa atgaaagttt gttttataaa aatttagcaa aaaaagaaga
    11761 aaaaatgatt aaaatttcag acttaaagaa ggttttatga tggattatgg tattgatatt
    11821 tggggaaatg aaaattttat tatcaaaaat ggtaaagttt gtatcaatca cgaaaaaaag
    11881 cccgctatta ttgatatagt taaagaatta agagatgatg gatacaaggg gcctttactt
    11941 ttaagatttc ctcatcttat ccaaaaacaa attgaaaata tttacggaaa tttcaataaa
    12001 gcaagaaagg aatttggcta taaaggagga tttaacgctg tttatccttt aaaggtaaat
    12061 caataccctg gttttgtaaa aaatcttgta aagcttggaa aagactataa ctacggactt
    12121 gaagcaggct ctaaagcaga gcttttactc gctatggctt ataataatga aggtgcacct
    12181 attacagtaa atggctttaa agatagagaa cttatcaata taggctttat cgcagctgaa
    12241 atgggacata atatcacttt aaccatagaa ggacttaatg aacttgaagc tatcatagac
    12301 atagccaaag aacgctttaa acctaaacca aatataggct tacgcgtgcg tttgcattct
    12361 gctggagttg gaatttgggc aaaaagtggt gggattaatt ctaaatttgg acttacatcc
    12421 actgaactta tagaagcggt aaatttactc aaagaaaaca aacttttaga acaatttacc
    12481 atgattcact ttcatctagg ctcacaaatt accgagattc atcccttgaa aaaagcctta
    12541 aatgaagcag gaaatattta cacagaactt agaaaaatgg gggctaaaaa tctaaaagct
    12601 atcaatcttg gtggcggttt agctgtggaa tactcacaat ttaaaaatga aaaaagtaga
    12661 aattacaccc taagagaata cgctaacgat gtagttttta tcctaaaaaa catagccgaa
    12721 caaaaaaaag atttagagcc tgatattttc atagaaagtg gacgttttgt agcagccaat
    12781 cacgctgttt taatcgctcc tgtattagaa cttttttctc aagaatacgc agaaaacaaa
    12841 ctcatactta aaaaacaaaa tccaaaactt atcgatgagc tttacgatct ttataaaagc
    12901 ataaaacctt ccaatgcttt agaatacttg cacgatagca tagatcattt agagagtatt
    12961 ttaactcttt ttgatttggg ctatgtggat ttgcaagatc gttccaatgc tgaaatttta
    13021 actcatttga ttacaaaaaa agctatcttg cttttaggcg ataagcaaaa tcctgcggat
    13081 ttacttgcca tacaagatga agtgcaagaa aggtatttgg taaatttttc gctctttcaa
    13141 agcatacctg atttttgggg cttagaacaa aatttcccca tcatgccact tgatcgctta
    13201 gatgaagaac cgactcgaag tgcgagcatt tgggatataa cctgcgatag cgatggagaa
    13261 atttcatact ctaaagatca acctttattt ttacacgatg tagatgtaga aaaagaaaat
    13321 tattttctag ggttttttct tgtaggtgcc tatcaagaag tacttggaat gaaacacaat
    13381 ctttttactc atcccactga agctattata agtatcaatg aaaaaggcta tgaagttgag
    13441 gggattatag aagcacaatc catacttgat gccttagaag atttagacta tgatatacac
    13501 gctatcatgg atatacttaa tgaacgcata agtaattcta agcttgtaaa tgacaagcaa
    13561 aaaaagcata ttttagggga actttatctt ttcttaaatg ataatggtta tttaaaaagc
    13621 ataggagttt agatgaattt ttggggtatt ataaaagaag atttttctca gccaaaggca
    13681 caagatccag cttttaattc ttgtatagaa ctttttttta attaccctgg agtgtgggct
    13741 gtagtaaatt accgctttgc acattttttt tatataagaa attttaaacg tattgcaaga
    13801 atgattagtg gaatttcaca attcttaact ggggtagatt tacaccctgg cgcagaactt
    13861 ggaaggcgtg tttttataga tcacgccaat ggagtggtta taggtcaaac agcaattata
    13921 gaagatgatg ttttaattta tcaaggcgtt actttaggtg gaacaagcct tgaaaaaggt
    13981 actaaacgcc atccaaccat aaaaaaagga gtgatcatag gctcaggtgc aaaagtactt
    14041 ggcaatatca ccataggaga aaatgccaaa ataggctcaa atgctgtagt agttaaagat
    14101 gtaggtgcaa atttaactgc cgttggaatt cctgcttata ttattgaaga gcgtaaaaat
    14161 aaaaatatta gagctataga tgcaaattgc gatgacaaac tagaaaagtt agaaaagaaa
    14221 attttagaac ttgaaaatct tatattaaaa caacttgaat cacaaaaata ataatttttt
    14281 ataatac
//
LOCUS       DAZBIH010000035        13743 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.035, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000035 DAZBIH010000000
VERSION     DAZBIH010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13743)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13743)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13743
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.035"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            33..1619
                     /gene="yidC"
                     /locus_tag="ACHFOB_000878"
     CDS             33..1619
                     /gene="yidC"
                     /locus_tag="ACHFOB_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HFN5799689.1"
                     /translation="MNNSNNIFQQKRILLAVVISFLFFVVYDYFFIPKQPLKIEQNIT
                     QQNQQNTSINNTPNIQNTTTNTPSAALVSQDSVISKVQSKHFEAQIDSFGRISAFYLK
                     DKKYQNEKGEFINLVSKENSPYPLEMRFSDPSINSEAFKIPYVANASNLFVDENGSQV
                     LKLTQNLSGLKIEKDITFYPKGNYEIEVKLSKNANYFISPGYRPNIAVDSYTVHGALV
                     MDNKETIETYKDGDVEKDESANNVVMTSAFDRYYATFFYNFDKPLNVAISKDANKNPI
                     VFAYSDNEFKAGGYIGSKEHVILRSIDPRLEAVVEYGWFTFIAKPMFEFLNFLHQYIG
                     NWGWAIVVMTLIVRIILFPLTYKSMISMNKLKDLAPKMKDIRERYKGDPQKMNMHMME
                     LYKKHGANPMSGCLPILLQIPIFFAIYRVLLNAIELKAAPWAFWIHDLSVMDPYFILP
                     ILMGATMFLQQLITPMTIQDPMQAKIMKFLPVIFTFFFITFPAGLTLYWFVNNLCSLV
                     QQWVINKIFAKEHHKKTSGA"
     gene            1623..2441
                     /locus_tag="ACHFOB_000879"
     CDS             1623..2441
                     /locus_tag="ACHFOB_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Jag N-terminal domain-containing protein"
                     /protein_id="HFN5799690.1"
                     /translation="MKIEAIDLQSALTEASRSLECSVMDLEYEIIQHPRKGFFGFGRK
                     KAIIEAKAKKRILKKNPKKEFTSSKNHKPETHEPKQENKIEIKNEKNKSQKEKYTVKS
                     DEIFDSFHRESKGVRNTQDILDEIRIQLVKLLESSQFKIELSELRMYDEDCVLIRLDG
                     EDAALMIGKEAHRYKAISYLLHNWINLKYNLLVRLEIAQFLENQIQGMQLYLQSVIEK
                     IKIHGRGQTKPLDGVLIKIALEQLRAEFPDKYVGIKQNNDQRFVVINDFFKKDE"
     gene            2434..3762
                     /gene="mnmE"
                     /locus_tag="ACHFOB_000880"
     CDS             2434..3762
                     /gene="mnmE"
                     /locus_tag="ACHFOB_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HFN5799691.1"
                     /translation="MSDTIAAIATAHGVGSISIVRLSGERALEFALKLSHKTKLTPRH
                     ATFTKLFNQNNEIIDEAIMIYFKAPYSFTGEDIVEFQTHGGFSVSEVLLEELVSLGAR
                     LALAGEFSKRACLNGKMTPLKALNIQDLILSKSALAAKIIARNMQGNLGELLEKIRTD
                     LVKTLAFVETSIDYADDDLPSDLLEQISTMCEENSKILKEIYTLSQSKKGLIEGFKIA
                     IVGKPNVGKSSLLNALLSYERAIVSDIAGTTRDTIEENFKLGTHLLRIIDTAGIRESK
                     DVIEQIGVALSKKSLEDADIILAVFDASRVQDKEDEKIFDLLANTDKKIFWILNKSDL
                     ENVFKNTQNKNFIKLSAQKDITLLKEELQNYLNSFDSEGIMVSSLDLINACKISSEAI
                     FRAKGLLEESSLEFFAFELNLAINELARFTKDFQRDEILDEMFGNFCLGK"
     gene            3773..5959
                     /gene="purL"
                     /locus_tag="ACHFOB_000881"
     CDS             3773..5959
                     /gene="purL"
                     /locus_tag="ACHFOB_000881"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HFN5799692.1"
                     /translation="MDKETIKAHKISDEEYAQILEILGREPNLLELGVISAMWSEHCS
                     YKSSKKYLNGFPTKAPWVIQGPGENAGVIDIGQGMAAVFKVESHNHPSFIEPFAGAAT
                     GVGGILRDVFTMGARVVAGLNSLKFGDIHDEKCGKHQKYLVKGVVNGISHYGNCMGVP
                     TIGGECAFDECFNGNILVNAFALGVCKSEDIFYAKAEGVGNPVIYVGSKTGRDGLGGA
                     VMASDSFNEESKSLRPTVQIGDPFSEKLLMEACLELFKTDYIVGIQDMGAAGLTSSSF
                     EMAGRSGSGMKLYLDKTPMRESGMTPYELMLSESQERMLICAKKGYEDKVIEIFKKWD
                     LDAVVMGEVTNTGKMELFWHDELVGLIPIEPLSEKAPILSRPTSEPKYLSEIKNYKFE
                     LKSSVQELFIQMLQNENINNKAFIYDQFDSSVQTNTIKADGRLGASVIRIKENGASVA
                     MAIECNSRLNYVNSKIGAALAVASAGRKVACTGAKPLAISDCLNYGNPQNPEVMWQFA
                     QGCEGIKEACKELNTPVVSGNVSLYNETEGVSIYPSPTIVSVGVLEDANKTLKASFEK
                     ENLSVYLLGESLGEFSGSMVMKIQDKKVSGSLKELDYKAELALWDLLYKANQNSLLEC
                     ANSVGIGGIAMTLAKMFAISSVGANLTSDFDDEKMIFDESASRAIIGLSKENEEAFLN
                     LAKEFGVKAYKLGVSTSQKHFKLDSIELSKAELDKLYFESFKEQIQ"
     gene            5956..6726
                     /locus_tag="ACHFOB_000882"
     CDS             5956..6726
                     /locus_tag="ACHFOB_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HFN5799693.1"
                     /translation="MTLVLIILVVLVFYWYYKTWGKQDFLNSATRGAKGFAKGFARGV
                     MEERMDEFKRRMNYYVIALLAKIAKSDGRVSENEAEMIKDLLDANAKDEKERAFLKAS
                     FNEHKENLSDAFYVAKDFLKEVPLPKNERFNVLRVLVFMALIDADFNAKKREILEQIA
                     KAFDIAKSELDAFIASLSNLKSTKKELSLDEAFAILELPNNADLNAVKKQYRNLAKKY
                     HPDILNANNVSEEELKIGVEKFQKINEAYEKVKKHLER"
     gene            6729..8261
                     /gene="purH"
                     /locus_tag="ACHFOB_000883"
     CDS             6729..8261
                     /gene="purH"
                     /locus_tag="ACHFOB_000883"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0003937 - IMP cyclohydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0004643 -
                     phosphoribosylaminoimidazolecarboxamide formyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006164 - purine nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HFN5799694.1"
                     /translation="MRALLSVSDKEGIVEFGKELENLGFEILSTGGTFKLLKENGIKV
                     IEVSDFTKSPELFEGRVKTLHPKIHGGILHKRSDENHIKQAKENEILGIDLVCVNLYP
                     FKKTTIMSDDFDEIIENIDIGGPAMIRSAAKNYKDVMVLCDPLDYEKVIETLKKGQND
                     ENFRLNLMIKAYEHTANYDAYIANYMNERFNGGFGASKFIVGQKVFDTKYGENPHQKG
                     ALYEFDAFFSANFKALKGEASFNNLTDINAALNLASSFDKAPAIAIVKHGNPCGFAIK
                     ENLVQSYIHALKCDSVSAYGGVVAINGTLDEALANKINEIYVEVIIAANVDEKALAVF
                     EGKKRIKIFTQESPFLIRSFDKYDFKHIDGGFVYQNSDEVGEDELKNAKLMSQREASK
                     EELKDLEIAMKIAAFTKSNNVVYVKNGAMVAIGMGMTSRIDAAKAAIAKAKEMGLDLQ
                     GCVLASEAFFPFRDSIDEASKVGVKAIVEPGGSIRDDEVVKAADEYGMALYFTGVRHF
                     LH"
     gene            8360..9088
                     /locus_tag="ACHFOB_000884"
     CDS             8360..9088
                     /locus_tag="ACHFOB_000884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799695.1"
                     /translation="MFKTIGFKVSAAIFVVLLISFIVMQVILNLDFKNTANKMSRANL
                     DTVSTSVFQTMRMAMNLGDPEKIKEAIEDAKSIEGISDIKIYPSKDTIDLFEMKAPQI
                     SNDKRIIEQFSNPKIQALEENVNGVVHLRLIRPLIADESCVACHANANVGSVIGVMDI
                     SHSLEGVQKDISKTSQSYIVIFTIALIFTLCVVLLMLKVVVGKPVLELLNHAKELAQG
                     SGNLKARISVKGQDEIALACGYIN"
     gene            9278..9952
                     /locus_tag="ACHFOB_000885"
     CDS             9278..9952
                     /locus_tag="ACHFOB_000885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002930723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN5799696.1"
                     /translation="MSNKANSANEKSFLLLEQMLKSLFNVANKVSTVSQNENELAKKV
                     ENMVNQAGNIQKATQMMDEIADKTNLLSLNAGIEAARAGAFGRGFSVIAEDVRQLAQN
                     SEEFLGNVAQITKELLQSINEVSAELKKNAQSVQALNDDTALLVDDANEVKLCNEDAR
                     ALVTQCTEKIKISQENIQNLLSRMQENVEVSEKNEEISKILLQVADELKIVCHNLESE
                     LNQFQI"
     gene            9962..10396
                     /locus_tag="ACHFOB_000886"
     CDS             9962..10396
                     /locus_tag="ACHFOB_000886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="META domain-containing protein"
                     /protein_id="HFN5799697.1"
                     /translation="MKKMLQIALAATFFAGCASTSLTSSTSKGNNELVQNQLFKIEKI
                     IVNGKTFDPKNAEESPNISFENNKFYGYSGCNRFFGSYQTKADTLQIEGDRVASTQML
                     CHPMDVMDFENSFLSNFKGTFKISNENGKLVLSNDEMKIFFK"
     gene            10495..11472
                     /locus_tag="ACHFOB_000887"
     CDS             10495..11472
                     /locus_tag="ACHFOB_000887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agamatine deiminase"
                     /protein_id="HFN5799698.1"
                     /translation="MIKSIPEWSEQEYLMLSLPHEKSDWNPYLEEILQSYKEFVKVVS
                     EFQKVLLIAPKQSDFENFKDIKNVEFFKCDTNDTWIRDFGAIDIVENGRLKALDFTFN
                     AWGNKFQSELDNAVNSKLFKEKFKEELKKVDFILEGGSIDFNGEGVMLTSSHCLLNEN
                     RNSHLNKTQIDTKLKEIFGLKQIIWLENGFIKGDDTDHHIDTLARFIDKNTIAHCICE
                     DEEDEHYLPLQKMKEELKKTGFDLLELPIPKPLYYEERRLGATYANFVFINNALIVPF
                     YKDKNDEIIAKRLSKALPNHKIIGVDARVFLRQNGSLHCSCQNRFKGLR"
     gene            11469..12356
                     /locus_tag="ACHFOB_000888"
     CDS             11469..12356
                     /locus_tag="ACHFOB_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HFN5799699.1"
                     /translation="MSLQKKATLVASLCAIVLALVKFIVGLTSGSVAVLSSAIDSLMD
                     FAISAFNFLALKKSSQKANENYNFGFSKIEALMGLLEGVFIVGVGIFIFYESILKIYY
                     KEEIKDLNSSIYVMIFALIMTFFLVLFLNYVAKKTKSLIIESDALHYKTDCLTNACTL
                     GALVLIYFTNLHIIDAIFGIVISLYTAFSAFKIIKKALAFLMDEALPKEQVDKICTLI
                     SNNPEIISYHELKTRKTPSCNYLSVHLVFCPIISLLNAHKISDEIEEGVRKMFENEKW
                     DIQIHLDPYDDAEQERQRQ"
     gene            12353..13225
                     /locus_tag="ACHFOB_000889"
     CDS             12353..13225
                     /locus_tag="ACHFOB_000889"
                     /EC_number="3.5.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-carbamoylputrescine amidohydrolase"
                     /protein_id="HFN5799700.1"
                     /translation="MKIALIQQKFHLNKEQTIKKTCEFIEEASKQGAELVCLGELHQS
                     EYFCQSENVDFFDYANDYEKDVKFWANIARKNQIVLIASLFEKRSAGLYHNTAVVFEK
                     DGSIAGKYRKMHIPDDPCFYEKFYFTPGDLGFEPINTSLGKLGVLICWDQWYPEAARI
                     MALKGAEILIYPTAIGWFDKDKDEEKQRQLNAWLGVQKGHAIANGLYVVAINRVGFEK
                     DVSGVEEGIRFWGNSFVFGPQGEELCLLDSQNECVKIIEIDKKRSENVRRWWPFLRDR
                     RIEYFTDLTKRFID"
     gene            complement(13237..>13743)
                     /locus_tag="ACHFOB_000890"
     CDS             complement(13237..>13743)
                     /locus_tag="ACHFOB_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NlpC/P60 family protein"
                     /protein_id="HFN5799701.1"
                     /translation="DKNLKNQLSQVLNLPYGWGGYNFERDCSLLTRDIFSAFGLYLPR
                     NSAAQKNSFNHFNISTLSNSQKKDFLNRFGKAYLSLLYLPGHIMLYAGQITDNNIAIH
                     NIWGLRKDATQRLLISSSVITSLEIGKNEILEDNLLLSRLKEISFINLNEQEKEQIKS
                     YLENIQNK"
BASE COUNT         4914 a         1707 c         2658 g         4464 t
ORIGIN      
        1 cttataaaaa tcatctttaa aaggacaaat cagtgaataa ttcaaataat atttttcagc
       61 aaaagcgtat acttttggct gttgtgattt cttttttatt ttttgttgtt tatgattatt
      121 ttttcattcc aaagcaacct ttaaaaatag aacaaaacat tacacaacaa aatcaacaaa
      181 acacaagcat aaataacact cctaatatac aaaataccac cacaaatact ccaagtgcag
      241 ctttagtttc gcaagatagt gtgatatcta aggttcaaag caagcatttt gaagcacaaa
      301 ttgactcttt tggtagaatt tctgcttttt atttgaaaga taaaaaatac caaaatgaga
      361 aaggggaatt tataaatctt gttagcaagg aaaatagtcc ttatccttta gaaatgcgtt
      421 ttagtgatcc aagtattaac tcagaggctt ttaaaattcc ttatgttgct aacgctagca
      481 atctttttgt cgatgaaaat ggaagtcaag ttttaaaact cactcaaaat ctttctggat
      541 tgaaaatcga aaaagatatt actttttatc caaaaggaaa ttatgagata gaagttaaac
      601 tcagcaagaa tgcaaattat tttataagtc caggatatcg tccaaatatt gccgtagata
      661 gttatacggt tcatggtgct ttggtaatgg ataataaaga aaccatcgaa acttataaag
      721 atggagatgt agaaaaggat gaaagtgcta ataatgtcgt aatgacttcg gcttttgata
      781 gatactatgc aactttcttt tataattttg ataaaccttt aaatgtggca atcagcaagg
      841 atgctaataa aaaccctata gtttttgctt atagtgataa tgaatttaaa gcagggggtt
      901 atataggttc taaagaacat gtgattttaa gaagtataga tccacgcctt gaagcagttg
      961 ttgaatatgg ttggtttact tttattgcta agcctatgtt tgagtttttg aatttcttgc
     1021 atcagtatat aggaaattgg ggttgggcta tcgttgtgat gactttaatt gtgcgtatta
     1081 ttttattccc gctaacttat aagtctatga tttctatgaa taaacttaaa gatcttgctc
     1141 ctaaaatgaa agatattaga gagcgttaca aaggcgatcc acaaaaaatg aatatgcaca
     1201 tgatggagct ttataaaaaa catggtgcaa atcctatgag tggttgtttg cctatacttt
     1261 tacaaattcc tattttcttt gctatttatc gcgttttgct taatgctatt gagctaaaag
     1321 cagctccttg ggcgttttgg atacatgatt tatcggtaat ggatccttat tttattttgc
     1381 ctattttaat gggtgcaacg atgtttttac aacagcttat tacacctatg actatacaag
     1441 atcctatgca agctaagatt atgaaatttt taccagtgat ttttactttt ttctttatca
     1501 ctttcccagc aggacttacg ctttattggt ttgtaaataa cctttgttct ttggttcaac
     1561 aatgggttat caataaaata tttgctaaag aacatcacaa aaaaacaagc ggagcatgaa
     1621 aaatgaaaat cgaagccatt gatcttcaaa gtgccttaac agaagcttca agaagtttag
     1681 aatgttctgt gatggactta gaatatgaga ttattcagca tccaagaaaa ggtttttttg
     1741 gatttggaag aaaaaaggca attatagagg ctaaagcaaa aaaaaggatt ttgaaaaaaa
     1801 atcctaaaaa agaatttaca agttcaaaaa atcacaaacc agaaacacat gagccaaaac
     1861 aagaaaacaa gattgaaata aaaaatgaaa aaaataaaag tcaaaaagaa aaatacacag
     1921 taaaaagtga tgaaattttt gatagttttc atcgagaaag caaaggagtg cgtaatactc
     1981 aggatatttt agatgagatt cgtattcagc ttgtaaaact tttagaaagc tcccagttta
     2041 aaatagagct tagtgaactt agaatgtatg atgaagattg tgttttgatt cgattggatg
     2101 gggaagatgc tgctttgatg ataggcaaag aagcacatcg ttacaaggct atttcttatc
     2161 ttttgcataa ttggatcaat ttaaaatata atcttttagt gcgccttgag atcgctcaat
     2221 ttttagaaaa tcaaattcaa ggtatgcagc tttatttaca aagcgtgatt gaaaaaatta
     2281 aaattcatgg acgcggacaa accaaacctt tagatggggt tttgataaaa atcgctttag
     2341 agcagttaag agctgaattt ccagataagt atgtaggaat taagcaaaat aatgatcaaa
     2401 gatttgttgt aataaacgac tttttcaaaa aagatgagtg atactatagc ggctattgcc
     2461 acagctcatg gtgtgggttc gatttctatt gtaagattaa gcggtgaaag ggctttagaa
     2521 tttgccttaa agcttagcca caaaaccaaa cttaccccgc gccatgctac ttttacaaaa
     2581 ctttttaatc aaaataatga aattatcgat gaagctataa tgatatattt taaagcccct
     2641 tatagtttta caggggaaga tatagtagag tttcaaactc atggaggatt tagtgtgagt
     2701 gaagttttac tcgaagaact tgtgagttta ggagcaagac ttgctttagc aggggaattt
     2761 agcaaaagag cgtgtttaaa tggcaaaatg actcctttaa aagctttaaa tatacaagat
     2821 ctcatacttt caaaatctgc acttgcagct aaaattatag cacgcaacat gcaaggaaac
     2881 ttaggagaac ttttagaaaa aattcgcaca gatttggtta aaaccttggc ttttgtagaa
     2941 actagcattg attatgctga tgatgattta ccttctgatt tattagagca aatttctact
     3001 atgtgtgaag aaaattctaa aattttaaaa gaaatttata cgctttctca aagcaaaaaa
     3061 ggactcatag aaggttttaa aatcgctatt gtaggtaagc caaatgtagg caaatcttcg
     3121 cttttaaatg ccttgctttc ttatgaaaga gctattgttt cagatatagc aggcaccact
     3181 cgtgatacta tagaagagaa ctttaaatta ggaacgcatt tattacgcat tatagataca
     3241 gcgggtatta gggaaagtaa agatgttata gaacaaatcg gcgtagcttt aagtaaaaaa
     3301 agtttagaag atgcagatat tattttggca gtctttgatg cttcaagagt gcaagataaa
     3361 gaagatgaga aaatttttga cttattagca aatactgata aaaaaatctt ttggatttta
     3421 aataaaagtg atttagaaaa tgttttcaaa aatactcaaa ataaaaattt tatcaagctt
     3481 agtgctcaaa aagacattac tttgttaaaa gaagaattgc aaaattatct taattctttt
     3541 gatagcgaag gtattatggt aagttcttta gatcttatta atgcttgtaa aatttcaagt
     3601 gaagcgattt ttagagctaa ggggctttta gaggaaagtt ctttagagtt ttttgctttt
     3661 gagcttaatt tagctattaa tgaacttgca agatttacca aagattttca aagagatgaa
     3721 attttagacg aaatgtttgg taatttttgt ttaggaaaat gaaaggatag aaatggataa
     3781 agaaaccata aaagcacata aaatcagcga tgaagaatat gcacaaattt tagaaatttt
     3841 aggacgtgag ccaaatttat tagaacttgg ggttatttct gcgatgtgga gtgagcattg
     3901 ctcttataaa tccagtaaaa aatatcttaa tggttttcca actaaagcac cttgggtgat
     3961 tcaaggtcca ggtgaaaacg caggggttat tgatatcggg caaggtatgg cagcggtttt
     4021 taaagtggaa agtcacaatc accctagttt tatcgaacct tttgcaggtg cggctacagg
     4081 agtaggggga attttgcgtg atgtttttac tatgggtgca agagtggttg cggggctaaa
     4141 ttctttaaaa tttggcgata ttcatgatga aaaatgcggc aaacatcaaa aataccttgt
     4201 taaaggcgtg gtaaatggaa tttctcatta tggaaattgc atgggtgtgc caactatagg
     4261 cggagaatgt gcttttgatg agtgttttaa tggaaatatc ttagttaatg cctttgcttt
     4321 aggggtttgt aaaagtgaag atatctttta tgctaaggct gaaggtgtag gaaatcctgt
     4381 gatttatgtg ggttcaaaaa cagggcgtga tggacttggt ggagcggtta tggcaagtga
     4441 tagcttcaat gaagaaagca aatctttgcg tcctacagtg caaattggcg atcctttcag
     4501 tgaaaaactt cttatggagg cttgtttaga gctttttaaa accgattata ttgtgggtat
     4561 tcaagatatg ggtgctgcag ggcttacttc aagttctttt gaaatggcag gaagaagtgg
     4621 cagtggcatg aaactttact tagataaaac tcctatgcgt gaaagcggta tgactcctta
     4681 tgagttaatg cttagcgaat ctcaagaaag aatgcttatt tgtgcgaaaa aaggctatga
     4741 agataaggtt atagagattt tcaaaaaatg ggatttagat gctgtggtta tgggtgaagt
     4801 taccaataca ggaaaaatgg agcttttttg gcatgatgag cttgtaggac ttattcctat
     4861 cgagccttta agtgaaaaag cgccgatttt aagtcgccct acaagtgaac caaaatattt
     4921 aagtgaaatt aaaaattata aatttgagtt aaaatcaagc gttcaagagc tttttataca
     4981 aatgcttcaa aatgaaaata ttaataataa agcttttatt tatgatcaat ttgattcaag
     5041 tgtgcaaacc aataccataa aagctgatgg aagattaggt gctagtgtta ttcgtatcaa
     5101 agaaaatggt gcaagtgtgg ctatggctat agaatgtaat tcacgcttaa attatgtaaa
     5161 ttctaaaata ggagcagctt tagcagtagc ttctgcagga agaaaagttg cttgtacggg
     5221 ggctaaacct ttggcaataa gcgattgttt aaattatgga aatccgcaaa atcctgaagt
     5281 gatgtggcaa ttcgcacaag gttgcgaagg tattaaagaa gcttgtaaag agttaaatac
     5341 cccagtagta agcggcaatg tttcgcttta taatgaaact gaaggcgtaa gtatttatcc
     5401 aagtcctact atagtaagtg taggggtttt agaagatgca aataaaaccc taaaagctag
     5461 ttttgaaaaa gaaaatttaa gcgtttatct tttgggtgaa agtttaggag aatttagtgg
     5521 atctatggta atgaaaatcc aagataaaaa agtatcagga agtcttaaag agcttgatta
     5581 taaagctgaa cttgcacttt gggatttgct ttataaagcc aatcaaaatt ctttacttga
     5641 gtgtgccaat agcgtaggaa tagggggtat tgctatgact ttggcaaaaa tgtttgctat
     5701 ttctagtgtg ggtgcaaatt taacaagtga ttttgatgat gaaaaaatga tttttgatga
     5761 gagtgcaagt cgtgctataa tagggcttag taaagaaaat gaagaagctt ttttaaattt
     5821 agctaaagaa tttggagtaa aagcttataa attaggtgtg agtacaagcc aaaaacattt
     5881 taaacttgat agcattgagt taagcaaggc tgaacttgat aagctttatt ttgaaagttt
     5941 taaagagcaa atccaatgac tttagtttta attatactcg ttgttttggt gttttactgg
     6001 tattataaaa cttggggaaa acaggatttt ttaaactcag ctacaagagg agccaaaggc
     6061 tttgctaagg gttttgctcg tggggttatg gaagaaagaa tggatgagtt taaaaggcgt
     6121 atgaattact atgttatcgc acttttggca aaaattgcaa aaagcgatgg cagggtaagt
     6181 gaaaatgaag ctgaaatgat caaagatctt ttagatgcaa atgccaaaga tgaaaaagaa
     6241 agagcttttt taaaagcaag ttttaacgaa cataaagaaa atttaagcga tgctttttat
     6301 gtggcaaaag attttttaaa agaagtgcct ttgcctaaaa atgagcgttt taatgtcttg
     6361 cgtgtgcttg tttttatggc tttaatcgat gcagatttta atgctaaaaa gcgtgaaatt
     6421 ttagagcaaa tcgctaaagc ctttgatata gcaaaaagcg aactagacgc ttttatagca
     6481 agtctttcaa atttaaaaag tactaaaaaa gaattaagtc ttgatgaagc ttttgctatt
     6541 ttagaacttc caaataatgc ggatttaaat gcggtaaaaa aacaataccg caatttggca
     6601 aaaaaatacc atcctgatat tttaaatgca aacaatgtta gcgaagaaga gcttaaaatc
     6661 ggcgtagaga aatttcaaaa aatcaacgaa gcttatgaaa aagttaaaaa acatttagaa
     6721 aggtaaaaat gagagcatta cttagtgtga gtgataaaga aggcatagta gaatttggca
     6781 aagagcttga aaatttaggt tttgagattc tttcaactgg ggggactttt aagcttttaa
     6841 aagaaaatgg aataaaagtt atagaagtga gtgattttac aaagagtcct gagctttttg
     6901 aagggcgtgt gaagactttg caccctaaga ttcacggtgg gattttgcat aaaagaagcg
     6961 atgaaaatca tatcaaacaa gcaaaagaaa atgaaatttt aggcattgat ctagtttgtg
     7021 taaatttata tccttttaaa aaaactacca ttatgagcga tgattttgat gaaattatag
     7081 aaaatatcga cataggcgga cctgcgatga taagaagtgc agcaaagaac tataaagatg
     7141 tgatggtgct ttgcgatcca cttgattatg aaaaagtgat tgagacttta aaaaaaggtc
     7201 aaaatgatga gaattttcgt ttaaatttga tgataaaagc ttatgagcat acagcaaatt
     7261 acgatgctta tattgcaaat tatatgaatg aacgctttaa cggaggtttt ggagcgagta
     7321 aatttatagt aggacaaaaa gtatttgata caaaatatgg agaaaatcca catcaaaaag
     7381 gggctttata cgagtttgat gcctttttta gcgcaaattt caaagccctt aaaggcgaag
     7441 caagttttaa caatctaacc gatattaacg cagctttaaa tttagctagt agtttcgata
     7501 aagctccagc tattgctata gtaaaacatg gaaatccttg cggttttgct ataaaagaaa
     7561 atttagtaca aagctatata catgctttaa aatgcgatag cgtcagtgct tatggaggag
     7621 tggttgcaat caatggaact cttgatgagg ctttagcaaa taaaatcaat gaaatttatg
     7681 tagaagtaat cattgcagcc aatgtagatg aaaaagcttt agccgtgttt gaaggtaaaa
     7741 aacgcattaa aattttcact caagaaagtc cgtttttaat ccgcagtttt gataaatatg
     7801 attttaaaca tattgatggg ggttttgtgt atcaaaacag tgatgaagtg ggcgaagatg
     7861 agcttaaaaa tgcaaagctt atgagtcaaa gagaggcaag taaggaagaa ttaaaagatc
     7921 ttgaaatcgc tatgaaaata gcagcgttta ccaaatcaaa caatgttgtt tatgtaaaaa
     7981 atggcgctat ggtggctata ggtatgggta tgacaagtag aatcgatgca gcaaaggcag
     8041 caatcgctaa agctaaagaa atgggacttg atttgcaagg ttgcgtttta gcaagtgaag
     8101 ccttttttcc ttttagagat agcatagatg aagcaagtaa agtaggggtt aaagctatag
     8161 tagaaccagg cggaagtata agagatgatg aagtggtaaa ggcggctgat gagtatggta
     8221 tggcgcttta ttttacagga gtaagacatt tcttacatta agtttaatgg aatgttatgt
     8281 tttttacaca taattcaata aaaattaaat aaattatgtg taaaatattt ccgaaaaatt
     8341 ttatttttag gaaactatga tgtttaaaac tataggattt aaggtttctg ctgcaatttt
     8401 tgtggtgttg cttataagtt ttattgtaat gcaagtgatt ttaaatttgg attttaaaaa
     8461 tactgccaat aaaatgagca gggcaaattt agataccgta agtacttctg tttttcaaac
     8521 aatgagaatg gctatgaatt taggagatcc tgaaaaaatt aaagaagcca ttgaagatgc
     8581 aaaaagtata gagggtatta gtgatattaa aatttatcct tcaaaagata ctatagatct
     8641 ttttgagatg aaagcccctc aaatttcaaa tgataagcgt attatagaac aattttcaaa
     8701 tcctaaaatt caagctttag aagaaaatgt aaatggtgtt gtgcatttaa gattgatacg
     8761 ccctttgatt gcagatgaaa gttgtgttgc ttgtcatgca aatgctaatg tagggagtgt
     8821 gattggggtt atggatatat cacattcttt agaaggtgtt caaaaagata taagcaaaac
     8881 cagtcaatct tatattgtaa tatttactat tgctttgatt tttacccttt gtgtggttct
     8941 tttaatgctt aaagttgttg ttggaaagcc tgttttagag cttttaaatc atgctaaaga
     9001 attagctcaa ggaagtggca atttaaaagc tcgtatttca gttaaaggtc aagatgaaat
     9061 tgctttagct tgtggatata tcaattaatt tatcgaaaaa actcataagg cagttagcgg
     9121 tgcaagtcat aattcaaaaa atgtagaaaa acaaagcaat cttttaaatt caaatgctat
     9181 ttctttaagt gatatcagtt cacaaagtca taagcaaata gatcaaagtt ttaaacttgg
     9241 tgcaaatgtt ggcaatgaac ttggagaact tgctagtttg tcaaataaag caaatagtgc
     9301 caatgaaaaa tcctttttat tattagaaca aatgcttaaa tctttgttta atgttgctaa
     9361 taaagtatca acagtatctc aaaatgaaaa tgaattggct aaaaaagttg aaaacatggt
     9421 caatcaagca ggtaatatac aaaaagcaac tcaaatgatg gatgagatcg cagataaaac
     9481 caatttacta tccctaaatg ctggcataga agcagctagg gctggtgcat ttggacgagg
     9541 tttttctgta attgctgagg atgttaggca gttggctcag aacagtgaag aatttttggg
     9601 aaatgtagct caaattacaa aagagctttt gcaaagtatt aatgaggtta gcgcagaatt
     9661 aaagaaaaat gctcaaagtg tacaagcttt aaatgatgac accgctttat tggttgatga
     9721 tgctaatgag gttaaattat gcaacgaaga tgctagggct ttggtaactc aatgtactga
     9781 aaaaataaaa atttcacaag agaatataca aaatttactt tctcgtatgc aagaaaatgt
     9841 tgaagtaagt gaaaagaatg aagaaatttc taaaattctg cttcaagttg cagatgagtt
     9901 aaaaatagtg tgtcataatc ttgaaagcga acttaaccaa tttcaaattt aaaggaataa
     9961 aatgaaaaaa atgcttcaaa ttgctttagc tgcaactttt tttgcgggtt gtgctagtac
    10021 ttctcttact tcatctactt ctaaaggtaa taatgaactt gtgcaaaatc agcttttcaa
    10081 aatagaaaaa attatagtaa atggcaaaac ttttgatcca aaaaacgcag aggaaagtcc
    10141 aaatatcagt tttgaaaata ataaatttta tggttattca ggatgcaatc gtttttttgg
    10201 ttcttatcaa actaaggcgg atactttaca aatcgaaggt gatcgcgtag cttcaactca
    10261 aatgctttgt cacccaatgg atgtaatgga ttttgaaaat tctttccttt caaatttcaa
    10321 aggaactttt aaaatttcaa atgaaaatgg aaaacttgtt ttaagcaatg atgaaatgaa
    10381 aatctttttt aaataatgcc ctaaagcctc gaaatatcga ggcaatcttc ttaaatttga
    10441 caaaagtcta aaaaatgata caattataat tttattatca aaaaaggtag ttaaatgata
    10501 aaatcaattc ctgaatggag tgagcaagaa tacctcatgc tttctttacc ccatgaaaaa
    10561 agcgattgga atccctactt agaggaaatt ttgcaaagtt ataaagaatt tgtaaaagtg
    10621 gtaagtgaat ttcaaaaagt tttacttata gctcctaaac agagtgattt tgaaaatttt
    10681 aaagatataa aaaatgtaga gttttttaaa tgtgatacca atgatacttg gatacgcgat
    10741 tttggagcta tagatatagt agaaaatggt cgtttaaaag ctcttgattt tacttttaat
    10801 gcttggggaa ataaatttca aagcgagctt gataatgctg taaattctaa gctttttaaa
    10861 gaaaaattta aagaggagct taaaaaggtt gattttattt tagaaggagg aagtattgac
    10921 tttaatggag agggtgtgat gcttacaagc tctcattgtc ttttaaatga aaatagaaat
    10981 tctcatctaa acaaaactca aattgataca aaattaaaag aaatttttgg tttaaagcaa
    11041 attatttggc tagaaaatgg tttcataaaa ggtgatgata cggatcatca tatcgatacc
    11101 ttagcaagat ttatagataa aaataccata gcgcattgta tttgtgaaga tgaagaggat
    11161 gagcattatt tgcctttgca aaaaatgaaa gaagagctta aaaaaacagg ctttgattta
    11221 ttagaacttc ctatacctaa gcctttatac tatgaagaaa gaagattagg agcgacttat
    11281 gcgaattttg tttttataaa taatgcttta attgtgcctt tttacaagga taaaaatgat
    11341 gaaatcatag ctaaaagact ttctaaagct ttacctaatc ataaaattat aggagtagat
    11401 gcaagagtgt ttttacgaca aaacggttct ttgcattgtt cttgtcaaaa tcgtttcaaa
    11461 ggtttaagat gagtttgcaa aaaaaagcaa ctcttgtagc aagtttatgt gctattgttt
    11521 tagccttggt taaatttata gtaggcttaa caagtggttc tgttgcagta ctttcaagtg
    11581 cgattgattc tttaatggat tttgctattt ctgcttttaa ttttttggct cttaaaaaaa
    11641 gctcacaaaa ggcgaatgaa aattataatt ttggtttttc taaaattgaa gctttaatgg
    11701 gtttgttaga aggtgttttt atagttggcg tggggatttt tattttttat gagagtattt
    11761 taaagattta ttataaagaa gaaattaaag atttaaattc aagcatctat gtgatgattt
    11821 ttgctttaat tatgactttt tttcttgtac tttttttaaa ttatgtagct aaaaaaacca
    11881 aaagtttgat tatagaaagt gatgctttgc attacaaaac agattgctta accaatgctt
    11941 gtactttagg ggctttggtt ttgatttatt ttacaaattt acatattatt gatgctattt
    12001 ttgggatagt gatcagtctt tatacggcat tttctgcttt taaaatcatt aaaaaagctt
    12061 tagctttttt aatggatgag gctttaccta aggaacaagt ggataaaatt tgtactttga
    12121 tttctaataa tcctgaaata atttcctatc atgaattaaa gacgcgtaaa actccaagtt
    12181 gtaattattt aagcgtgcat ttggtttttt gccctataat ttcgctttta aatgcgcata
    12241 aaatttcaga tgaaatagaa gaaggtgtgc gtaagatgtt tgaaaatgaa aaatgggata
    12301 tacaaattca tttagatcct tatgatgatg cagaacaaga aaggcaaaga caatgaaaat
    12361 cgctttaata caacaaaaat ttcatttaaa taaagaacaa actataaaaa aaacttgcga
    12421 atttatagaa gaagcctcta aacaaggagc tgagcttgtt tgcttaggag aacttcatca
    12481 aagtgagtat ttttgtcaaa gtgaaaatgt ggattttttt gactatgcta atgattatga
    12541 aaaagatgtg aaattttggg caaatatagc tagaaaaaat caaatagtgc ttattgcttc
    12601 attgtttgaa aaacgaagtg ccggacttta tcataatact gcagtggttt ttgaaaaaga
    12661 tggttctata gcaggcaaat atcgcaaaat gcacataccc gatgatcctt gtttttatga
    12721 aaaattttat tttactcctg gagatttggg ttttgaacct ataaatacaa gtttaggtaa
    12781 gcttggagtg cttatttgtt gggatcagtg gtatcctgaa gcagcaagaa ttatggcttt
    12841 aaaaggagct gagattctta tttatcccac ggcaattggt tggtttgata aggataaaga
    12901 tgaagaaaaa caaagacagc tcaatgcttg gcttggcgta caaaaaggac atgctatagc
    12961 taatggttta tatgtagtag ctatcaatag agtaggtttt gaaaaagatg taagcggggt
    13021 agaagagggc attagatttt ggggaaattc ttttgttttt ggccctcaag gtgaagaact
    13081 ttgtctttta gattctcaaa acgaatgtgt aaaaatcata gaaatagata aaaaaagaag
    13141 tgaaaatgtg cgtcgttggt ggcctttttt gcgagataga cgcatagaat attttacaga
    13201 tttaactaaa agatttattg attaaatcaa taaatcttat ttgttttgta tattttcaag
    13261 atagcttttt atttgctctt tttcttgttc gtttaaattt ataaaactta tttctttaag
    13321 tcttgataaa agcaaattat cttctaaaat ttcatttttt cctatttcta aagaagtgat
    13381 gacgctagaa cttatgagaa gtctttgggt tgcatctttt cttaagcccc atatattatg
    13441 tatggcaata ttattatctg taatttgccc tgcataaagc ataatatgtc caggtaaata
    13501 aagtaaacta agataagctt tcccaaagcg gtttaaaaaa tctttttttt gagaattact
    13561 aagagtgctt atattaaaat gattaaaaga atttttttgt gcagctgaat ttcttggtag
    13621 ataaagtcca aaagctgaaa agatatcacg agttagtaaa gaacaatctc tttcaaaatt
    13681 ataaccgccc cagccataag gcaaatttaa aacttgtgaa agctgatttt ttaaattttt
    13741 atc
//
LOCUS       DAZBIH010000036        13333 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.036, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000036 DAZBIH010000000
VERSION     DAZBIH010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 13333)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13333)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13333
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.036"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..126)
                     /locus_tag="ACHFOB_000891"
     CDS             complement(<1..126)
                     /locus_tag="ACHFOB_000891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YraN family protein"
                     /protein_id="HFN5799702.1"
                     /translation="MGVKAYLDGILGEDKACKFLKKQGFEILKRNFHSKFGEIDII"
     gene            complement(126..1373)
                     /gene="hom"
                     /locus_tag="ACHFOB_000892"
     CDS             complement(126..1373)
                     /gene="hom"
                     /locus_tag="ACHFOB_000892"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HFN5799703.1"
                     /translation="MKVAILGYGTVGSAVVKFLLENDKLIRARCGQSITPVIALARSP
                     KKNALIPITHSVEEILNADVDVFVELMGGVDEAFKIVSEILKKKKAVVTANKAMLAYH
                     RYELENLAKNLAFGYEASVAGGIPIIKVLKEGLSANNILAIKGILNGTSNYILSSMSQ
                     KNMSFEQALQIAQNLGYAEADPTFDIEGQDAAHKLLVLSSIAYNLKAKPEDILIEGIS
                     EIGPEDMYFANEFEFTIKLLGIAKVRENKVELRVHPTMIDKEKMLAKVDGVMNAISIN
                     GDLLGESLYYGVGAGGEATASAVISDLMDIARDQVKAPMLGFVNTLEYELLSKDEIYT
                     KYYLRVKVEDKIGVLSKITQLMSENNISIDSFLQKPKKNDENYSTLFFTTHLTYEKSI
                     QNLLEILRKQDFIKTKPFMMRIE"
     gene            complement(1377..2579)
                     /locus_tag="ACHFOB_000893"
     CDS             complement(1377..2579)
                     /locus_tag="ACHFOB_000893"
                     /EC_number="2.6.1.83"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LL-diaminopimelate aminotransferase"
                     /protein_id="HFN5799704.1"
                     /translation="MFDEIRFNTIERLPNYVFAEVNAIKMAARRAGEDIIDFSMGNPD
                     GKTPQHIIDKLCESANKDKTSGYSTSMGIYKLRLAICNWYKRKYNVNLDPENEVVATM
                     GSKEGFVNLARAIINPGDVAIVPTPAYPIHTQAFIIAGGNVAKMPLAYNEKFELDENQ
                     FFENLHKTLNESIPRPKYVVVNFPHNPTTVTCEKSFYERLIATAKKERFYIISDIAYA
                     DLTYDDYKTPSILEIEGAKDVAVETYTLSKSYNMAGWRVGFVVGNKRLVSALKKIKSW
                     FDYGMYTPIQVAATIALDGDQTCVDEIRATYDKRMHILLEAFENAGWKLQKPRASMFV
                     WAKLPESKRHLKSLEFSKQLLQRASVAVSPGVGFGEAGDEYVRIALIENENRIRQATR
                     NIKKYLKE"
     gene            complement(2591..3397)
                     /locus_tag="ACHFOB_000894"
     CDS             complement(2591..3397)
                     /locus_tag="ACHFOB_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799705.1"
                     /translation="MVKKIIILTLWVNISFAISSLELAKNLVNNPSKNSQLELLFSNN
                     SYIDNNGNCDIAKISQILKTNSLIALTLSNPQSLRLNFKAKADEVMFFKILSDVLTDA
                     GYIYFIPTDLILREGNIDYTIQVESQYVLDPGTLYNLLKENSVYINNIKRIGAYDYEY
                     DLNFSNAVLKTNTNVNLNTPKSLEKPLKDYVLDLKNATNLIIDANDLDNWFPKIFFLD
                     KNLNLIKAVKSENKNNHFSELIPNGAIYAIVSDMYSLDNIRRGLKITLKK"
     gene            complement(3391..4329)
                     /locus_tag="ACHFOB_000895"
     CDS             complement(3391..4329)
                     /locus_tag="ACHFOB_000895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799706.1"
                     /translation="MLNWKKIQELNLKEVAAKTQIELDFLEALVEKNFAVLSRFNVKG
                     FVKILSREYELDFSDFNEEYEAYLNENNPTPQTKSKMITPKLDAYSQKSSNAWPFLIV
                     LIVLVIIGSGIYYFDTLKTFFKDEQNNTSATVIDIIGQAQENLKSLGGNNVVVIDNNK
                     AQETNQTESVLPSQNISLQENDKNISIENNISENNTTLLDEEKNTQIQEDTNTPKTDS
                     LKEAHFKTSTKIWIGLIDLKSLKKTSFVKEKDFNISLDKDQLILTGAAALTMFDQENK
                     EQKFPAGISKRFLIKDGKITSISAAEFVKLNKGKEW"
     gene            complement(4322..5005)
                     /gene="rlmB"
                     /locus_tag="ACHFOB_000896"
     CDS             complement(4322..5005)
                     /gene="rlmB"
                     /locus_tag="ACHFOB_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008173 - RNA methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HFN5799707.1"
                     /translation="MIVYGKQIFFYILEYHKDCINELYLAKECDKITFSKIAKSGFKI
                     KKLDFKTAQAYAKGGNHQGFLLDIKESSFANLNEIKKNDFIVMLYGISDVGNIGAITR
                     TAYALGVGALIFIGEKLAMEGVIRTSSGAALDLPIVISNDALSVINELKQVGFYFYAS
                     DGSGKEIHSVKINNGKKVLVLGSEGFGLSSKIVKKCDECVGIAMKNNFDSLNVSAAFA
                     ILCDRMLNA"
     gene            complement(5019..5843)
                     /gene="rsmI"
                     /locus_tag="ACHFOB_000897"
     CDS             complement(5019..5843)
                     /gene="rsmI"
                     /locus_tag="ACHFOB_000897"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008649 - rRNA methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0000451 - rRNA 2'-O-methylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HFN5799708.1"
                     /translation="MLYFIPTPIGNLSDISFRALELLKTCDLVFCEDTRVSKSLISLL
                     NTKFHTDIHISKFIALHSHNEKEVLASIDLKIFEKNVAYLSDAGMPGISDPGKALVEF
                     AQENNITYEILPGANAALVALVSSAFCQKEFIFIGFLANKGKERQKDIEKILNFPYPS
                     IIYESPKRILSLVEQIMILDSQREIFLIKEISKKFEKKFKGNAKELSEILKKSNLNGE
                     WVVVLQSKEQNFLQNTLCEKDIMDLELPLKAKAKLLSKINGKNAKEIYQKLLLSQD"
     gene            complement(5846..6046)
                     /gene="rpmE"
                     /locus_tag="ACHFOB_000898"
     CDS             complement(5846..6046)
                     /gene="rpmE"
                     /locus_tag="ACHFOB_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31"
                     /protein_id="HFN5799709.1"
                     /translation="MKKEIHPEYVECKVSCACGNTFTTKSNKAELRVDICSNCHPFFT
                     GSEKIVDAAGRVEKFKKKYAMQ"
     gene            complement(6125..6781)
                     /locus_tag="ACHFOB_000899"
     CDS             complement(6125..6781)
                     /locus_tag="ACHFOB_000899"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HFN5799710.1"
                     /translation="MQFLYNKQAGEEFIQLQGENFNHLKVRRVKENSELNLRNLQDNF
                     LYNYTITNLTRNSCTLKFLNKKSQNIKQSELNLALAIIDIKILEKTLPFLNELGVKKL
                     HLVFTNFSQRNFKIDLERFEKIIISSCEQCGRNTKMDLIIHQSTQEFIQKFPNAIMVD
                     FQGKQQSHFDEKELYFIGPEGGFNNDERLLFNRKISLKSSNILKSQTAIIAIASKILL
                     "
     gene            complement(6783..7190)
                     /locus_tag="ACHFOB_000900"
     CDS             complement(6783..7190)
                     /locus_tag="ACHFOB_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799711.1"
                     /translation="MDQSYEFFLALHLYSLYASGFLMLFYLILTQGNFKTEFIFIRRI
                     RLFLPIYYLFLALIIFTGCLLSAMKQFQMNVNIWVMIFSWILIFALAIFHFVCFKKAR
                     RFRKYATFRWISCLILPFEIFLLFLPFLIERYL"
     gene            complement(7190..7615)
                     /locus_tag="ACHFOB_000901"
     CDS             complement(7190..7615)
                     /locus_tag="ACHFOB_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN5799712.1"
                     /translation="MQKAKILIALSFFLLVLSACSNDEKNISKTQNTDQEVVQIEQND
                     EKTELSDSNLPLPVDDEAQSSDDEHEANPTIINSLYKQKCATCHGEKGELKPKNSTAI
                     KTLGNKIFIQKIKMIKDKNHSFLSDEQIQNLADFINKGK"
     gene            complement(7615..8196)
                     /locus_tag="ACHFOB_000902"
     CDS             complement(7615..8196)
                     /locus_tag="ACHFOB_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-pyruvoyl tetrahydropterin synthase family
                     protein"
                     /protein_id="HFN5799713.1"
                     /translation="MIIRKLFEFENAHIVRFCSSKRCKSSIHGHSYKVEVLLESKYLD
                     NAGMVYDFGLLKTYIRQIIDSFDHAITLFKYDDAKYLEEMKKYSSRWICLPVNVSAEN
                     FCRVFFILIDALLKQTKMINGEQGVTLQSIIVHETRTGYAQGFREDAYSELMPKISLQ
                     DIEFSNGIKAEWNDIDFYNKLKNEEIFINPKEI"
     gene            complement(8193..8936)
                     /locus_tag="ACHFOB_000903"
     CDS             complement(8193..8936)
                     /locus_tag="ACHFOB_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HFN5799714.1"
                     /translation="MQLVESFLSIQGEGKYNGKLAIFMRFAGCNFNCLGFNVKISKND
                     KTLIGCDTIRAVFTKDFKESYETLNANELLKRVIKLKQDFNPIVVITGGEPLIHYENP
                     EFIKFIQMLLKNKFEIHFESNGSIEIDFDRYPFYKECIFALSVKLQNSGIKKDKRLNF
                     KALKAFKNYAKDSFYKFVLDANTLDNSFLEINEILKEAPNQIFCMPMGENEQNLKKNA
                     QKIAEFCIKNGYNYSDRIHIRLWNDKEGV"
     gene            complement(8939..9901)
                     /gene="moaA"
                     /locus_tag="ACHFOB_000904"
     CDS             complement(8939..9901)
                     /gene="moaA"
                     /locus_tag="ACHFOB_000904"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HFN5799715.1"
                     /translation="MLIDQFGRKINYLRISVTQRCNFRCLYCMPKIPFDYQPKENLLS
                     FEELFLFVKAAIDEGIEKIRITGGEPLLRKDLSIFIKMISDYKSDIDLAITTNGFLLK
                     DFAKDLKNAGLKRLNISLDTLDHKKAKTLAQKDVLDSVLSGIDEALNLDLKVKLNTVA
                     LKNLNDDELISLLEFAKSKKAQIRFIEFMENTHAYGKLQGLKRDEIIQILSQKYQIQL
                     IKKDEKAPVSIYKADDYEFGIIDPHSHEFCDSCNRIRLSAEGLLIPCLYFDEALSIKE
                     AVRKGDIKAAVEILQEVLRNKPEKNKWSVVDNETSSRAFYQTGG"
     gene            complement(9914..10429)
                     /locus_tag="ACHFOB_000905"
     CDS             complement(9914..10429)
                     /locus_tag="ACHFOB_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799716.1"
                     /translation="MSDDVLYLVFIIVLLIAMLAYMNIKERENNAKIAKLQNVIEDIT
                     KELHYFRKELGVKDDSEEDEDYKTSLLKEEIMIELDKQISSKITPVLRTLKTMEHIIE
                     DFQNEQQNRLLNLEQKAQSMAKLTPNYDTEEQKIENLFKEGKSIEQIAKDLRIGTGNV
                     ELVLKFKKLIK"
     gene            complement(10426..10923)
                     /locus_tag="ACHFOB_000906"
     CDS             complement(10426..10923)
                     /locus_tag="ACHFOB_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799717.1"
                     /translation="MELTLFKAGFEAHLECCEIENNRFLGEYLKLGAISQILKWKKLA
                     LRIDFDEGEKIIFDLLLSLKEDILRLENSLDKNKELIPLKQKGVIESLNFEYLNFLDT
                     ILEEDKEYYLRFDLNNQKIAIFIKAQSQTLAKIIKIKPEDKMAFDAFVVEIQRNMIRN
                     KKGQE"
     gene            complement(10914..11798)
                     /gene="mqnP"
                     /locus_tag="ACHFOB_000907"
     CDS             complement(10914..11798)
                     /gene="mqnP"
                     /locus_tag="ACHFOB_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis prenyltransferase MqnP"
                     /protein_id="HFN5799718.1"
                     /translation="MNTFWIKFKDILELVVFKHSIFALPFLFSSMIVASKLANDTAWF
                     GFKALILGIICAVGARNFAMATNRLMDEDIDKDNPRCANRPNVSGKIGRKSVWIFIII
                     NALIFISCSYFINTLAFYLSFPVLFVLAIYSAFKRFSSLAHLVLGFCLGLAPIAGSVI
                     IMGKIHIYSVILCLGVTFWTAGFDLLYSLQDMEYDKKVGLHSIPAKFGSKATLFISAF
                     CHILAVLFWLLFVWEVWGVALGKIALIGVIISGIILALEHRIVHKNFAHINRAFFTLN
                     GYLSIIFFIFIWIDLLWN"
     gene            11869..12738
                     /gene="miaA"
                     /locus_tag="ACHFOB_000908"
     CDS             11869..12738
                     /gene="miaA"
                     /locus_tag="ACHFOB_000908"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0052381 - tRNA dimethylallyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HFN5799719.1"
                     /translation="MFFEIALIGTTASGKTYIANTLAREFDAVVLSLDSLCVYKEINI
                     ASAKPSQDDLASIKYFGVNLLSVNEHFNVELFIREYQKAKEFALARNLPLIIVGGTGF
                     YLKTMIDGLSEKTLESKSSLNNDEIYTLLLNIDPNYKIEKNDTYRLKKWLGIYEQTRE
                     IPSEFLKRTQKTGVLKDIEIYELSWDKEILKKRIQTRTKEMLDNGLLDEAKILFSKFD
                     HKLKALNSIGLKECKEYLDGEISFKELENLITIHTTQLAKRQRTFNKKFQSKALEFDK
                     ALAILRMKFSIEK"
     gene            complement(12724..13287)
                     /locus_tag="ACHFOB_000909"
     CDS             complement(12724..13287)
                     /locus_tag="ACHFOB_000909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese efflux pump MntP family protein"
                     /protein_id="HFN5799720.1"
                     /translation="MDFYSLIFLSCALGMDAFAVSLCKGFSVKKLHLKHYLIVGIYFG
                     GFQALMPTIGYFIGITFASFIASIDHWIAFILLSLIGLKMIKESLENENCDSNANQFG
                     FKTMLALAIATSIDALAVGVSFAFLNVNLLLAIFLIGIITFILCIIALKIGNKFGIYL
                     KNKAELLGGLVLIILGVKILIEHLFFD"
BASE COUNT         4549 a         2120 c         1665 g         4999 t
ORIGIN      
        1 tattatatcg atttctccaa atttagaatg gaaatttctt tttaaaattt caaagccttg
       61 tttttttaaa aatttacaag ccttatcttc ccctaaaatt ccatctaaat aagcttttac
      121 acccattatt ctatacgcat cataaaaggc ttggttttta taaaatcttg tttgcgtaaa
      181 atttcaagca aattttgtat gcttttttca taagttaaat gcgtagtaaa aaacaaagta
      241 ctgtaatttt catcattttt tttaggtttt tgtaaaaaac tatcgataga aatattattt
      301 tcactcatca attgtgtgat tttagataaa acccctattt tatcttcaac tttcactctt
      361 aaataatatt ttgtataaat ttcatctttg cttaaaagct cgtattctaa agtattcaca
      421 aaaccaagca ttggtgcttt tacctgatct cttgctatat ccataagatc tgaaatcaca
      481 gcacttgcag tggcctctcc tcctgctcct actccataat acaaactttc acccaacaaa
      541 tctccattaa tgcttatagc attcatcact ccatcaactt ttgcaagcat tttttcttta
      601 tctatcatag taggatgcac tcttaattct actttatttt cacgcacctt agctatacct
      661 aaaagtttta tggtaaattc aaactcatta gcaaaataca tatcttcagg cccaatttca
      721 ctaataccct cgatcaaaat atcttcaggt ttagctttaa gattataagc gatacttgat
      781 aaaacaagca gtttatgtgc tgcatcttgt ccttctatgt caaaagttgg atcagcctct
      841 gcataaccta aattttgagc tatttgtaag gcttgttcaa aactcatatt tttttgactc
      901 atagaactta aaatataatt actcgtgcca tttaaaatcc cttttatagc caaaatatta
      961 tttgcactta aaccttcttt taaaaccttg ataataggaa ttcctccagc tacacttgct
     1021 tcataaccaa aggctaaatt tttagccaaa ttttcaagtt cataacgatg ataagcaagc
     1081 atagctttat ttgcagtaac aacagctttt ttctttttta aaatttcact cactatttta
     1141 aaagcttcat ccactccacc cattaactcc acaaaaacat ctacatcagc atttaaaatt
     1201 tcttcaacac tgtgagtaat tggaattaaa gcattttttt taggacttct agcaagagcg
     1261 atcacaggag ttatgctttg accgcacctt gcacgaatga gtttatcatt ttctaaaaga
     1321 aatttaacca ccgcacttcc aacagtgcca taaccaagaa tcgctacttt cataacttac
     1381 tcttttagat attttttgat attgcgtgta gcttggcgta tgcgattttc attttcaatt
     1441 aaagcaattc ttacatactc atcacctgct tcgccaaaac ctaccccagg acttactgca
     1501 acactagcgc gttgtaaaag ttgctttgaa aattctaaac tttttaaatg tcttttgctt
     1561 tcagggagtt ttgcccaaac aaacatactt gctcttggtt tttgaagttt ccagcctgca
     1621 ttttcaaaag cttcaagtaa aatgtgcatt cttttatcat aagttgcacg gatttcatct
     1681 acacaagttt gatctccatc taaagctatg gtagctgcta cttgaatagg tgtgtacata
     1741 ccataatcaa accaagattt tattttttta agcgcactga ctaagcgttt atttcctact
     1801 acaaaaccca cacgccagcc tgccatattg taagattttg aaagagtgta agtttctacc
     1861 gctacatctt ttgcaccttc aatttccaaa atagaaggag ttttatagtc atcataagtt
     1921 aaatctgcat aagcaatatc tgaaataata taaaatcttt ctttttttgc cgttgctatc
     1981 aatctttcat aaaaactttt ctcacaagtt actgttgttg gattatgcgg gaaattaaca
     2041 acgacatatt ttggacgcgg gatgctttca tttaaagttt tatgcaaatt ttcaaaaaat
     2101 tgattttcat caagctcaaa tttttcatta taagctaaag gcatttttgc tacattacct
     2161 cctgctataa taaaagcttg agtatgtata ggataagcag gagttggcac aatagcaaca
     2221 tctccaggat ttataatcgc tcttgcaaga tttacaaaac cctcttttga acccatggta
     2281 gctacaactt cattttcagg atctagatta acattatatt ttcttttata ccaattacaa
     2341 attgctaagc gaagtttata aatccccatg gatgtagaat atcccgaggt tttatctttg
     2401 ttagcacttt cacaaagttt atctataatg tgttgtggag ttttaccatc gggatttccc
     2461 attgaaaagt cgatgatatc ctctccagca cgtcttgctg ccatttttat cgcatttact
     2521 tctgcgaaaa cataatttgg aagtctttct atggtattaa aacggatttc atcaaacatt
     2581 tcttaatcct ttatttttta agtgtgattt ttaaacccct gcgtatatta tctaaactat
     2641 acatatcgct tacaatagca tatatagcac catttggaat aagttctgaa aaatgattat
     2701 ttttattttc gctttttact gctttaatta gattgagatt tttatctaaa aagaagattt
     2761 taggaaacca attatctaaa tcatttgcat caataatcaa atttgtagca ttttttaaat
     2821 caagcacata gtctttaagg ggcttttcta atgattttgg agtatttaaa ttaacatttg
     2881 tattggtttt taatacagca ttggaaaaat ttaaatcata ttcatagtca tatgccccaa
     2941 tacgcttaat attatttata tagacagaat tttcttttaa gagattgtaa agcgttccag
     3001 gatctaaaac atattgagat tctacttgta tggtatagtc aatatttcct tctcttaaaa
     3061 tcaaatctgt agggataaaa tatatatatc cagcatctgt taaaacatcg gataaaattt
     3121 taaaaaacat aacttcatca gcttttgctt taaaatttag tcttagactt tgaggatttg
     3181 atagtgttaa ggcaattaaa gaattggttt ttaatatttg agatattttt gcaatatcac
     3241 aatttccatt attatctatg taagaattat ttgaaaataa taattctagt tgagaatttt
     3301 tactaggatt gtttactaaa ttttttgcta attcaagact tgagattgca aaagatatat
     3361 taacccaaag agtaagaata ataatttttt ttaccattct ttacctttat ttaattttac
     3421 aaattcagca gctgaaatac ttgtaatttt tccatcttta atcaagaaac gttttgaaat
     3481 tcctgcagga aatttttgtt ctttattttc ttgatcaaac attgttaaag ctgcagcccc
     3541 tgttaaaatt aactgatctt tatctaaaga aatattaaaa tctttttctt taacaaagct
     3601 tgttttttta agacttttta aatctattaa acctatccaa atcttggtag aggttttaaa
     3661 atgtgcttct tttaaagaat cagtttttgg tgtatttgtg tcttcttgga tttgggtatt
     3721 tttttcttca tcgagtagag ttgtgttatt ttcactgata ttattttcta tgcttatgtt
     3781 tttatcattt tcttgtaatg agatattttg gcttggtaaa acgctctctg tttgatttgt
     3841 ttcttgtgct ttattgttgt ctataacaac aacattgttt ccacctaaag attttaaatt
     3901 ttcttgtgct tgtcctatga tatctataac tgttgcgcta gtattatttt gttcatcttt
     3961 gaaaaaagtt ttaagtgtat caaaataata aattccactt cctataatca ctaaaacaat
     4021 aagaacaatc aaaaaaggcc aagcgttaga ggatttttga ctataagcat ctagttttgg
     4081 ggttatcatt tttgattttg tttgtggagt aggattgttt tcgttaagat aagcttcata
     4141 ctcttcgtta aaatcactaa agtcgagttc gtattctctg ctcaaaattt taacaaaacc
     4201 tttaacatta aaacgactta aaacagcaaa attcttttct actaaagctt caagaaaatc
     4261 aagttcaatt tgcgtttttg ctgcaacttc ttttaaattt aattcttgta tttttttcca
     4321 attaagcatt taacatccta tcacaaagta ttgcaaaagc agcgctgaca ttaagactat
     4381 caaaattatt tttcatcgca atgcccacac attcatcgca tttttttaca attttagagc
     4441 ttaaaccaaa accctcacta cccaaaacta aaactttttt accattgttt atttttacac
     4501 tgtgaatttc ttttcccgag ccatcacttg cataaaaata aaaacctact tgttttagtt
     4561 catttattac acttaaagca tcgttgctta tcacaatagg taaatcaaga gccgctccgc
     4621 tgcttgtgcg aattactcct tccatggcta atttttcacc aataaaaatt aaagccccaa
     4681 cccctaaagc ataagctgta cgcgtgatag cccctatatt tcctacatca ctaattccat
     4741 aaagcataac aataaaatca ttttttttga tctcatttaa atttgcaaaa gaactttctt
     4801 taatatctag caaaaaacct tgatgatttc cacctttcgc ataagcttga gcagttttaa
     4861 aatcaagttt tttgatttta aaacctgatt ttgcgatttt ggaaaaagta attttatcgc
     4921 attcttttgc taaataaagc tcattgatac agtctttatg atattctaaa atataaaaaa
     4981 atatttgctt cccataaact atcatattaa aattttacct aatcttgact taaaagcagt
     5041 ttttgataaa tttcttttgc attttttcca ttgatctttg ataataattt tgcttttgct
     5101 tttaaaggca gctctaaatc cataatatct ttttcacaaa gagtattttg caaaaaattt
     5161 tgctcttttg attgcagtac tacaacccat tcaccgttta aattagactt ttttaaaatt
     5221 tcagaaagct ctttagcatt gcctttaaat tttttttcaa attttttact gatttcttta
     5281 atcaaaaaaa tttctctttg gctgtctaga atcataatct gttctactaa agataaaata
     5341 cgtttggggg attcgtaaat aatacttgga taaggaaagt ttaaaatttt ttctatatct
     5401 ttttgtcttt ctttgccttt atttgctaaa aaaccaataa agataaattc tttttgacaa
     5461 aatgccgagc ttacaagagc aactaaggct gcatttgcac ctggtaaaat ttcataggtg
     5521 atattgtttt cttgtgcaaa ttctaccaaa gccttgccag gatcactaat ccctggcatt
     5581 cctgcatcgc ttaaataagc tacatttttt tcaaatatct ttaaatcaat acttgctaaa
     5641 acttcttttt cattatggga gtgtaaggct ataaatttag aaatatgtat atcagtgtga
     5701 aatttggtat ttaataacga aatcaaagac ttacttactc ttgtatcttc gcaaaacaca
     5761 agatcgcaag tctttaaaag ttctaaggct ctaaaagaaa tatcgcttaa atttcctatg
     5821 ggagtaggaa taaaataaag cataattatt gcattgcgta ttttttctta aatttctcta
     5881 cacgacctgc agcatctaca attttttcac tgcctgtaaa aaaaggatgg caatttgaac
     5941 aaatatctac tcttaattct gctttgtttg acttcgttgt aaaagtattt ccacaagcac
     6001 aacttacttt gcattctacg tattctgggt gaatttcttt tttcattagt tttccttaaa
     6061 aattaaaaca ataagccgtg attataaatt atttaacata aaaaagagat taatttaaga
     6121 aaaattaaag caaaattttt gaagctatag ctataatagc tgtttgactt tttagaatat
     6181 tagagctttt aagagagatt ttccggttaa acaataatct ctcatcattg ttaaatccac
     6241 cttcaggacc tataaaatat aattcttttt catcgaaatg actttgttgt tttccttgaa
     6301 aatcaaccat aattgcattt ggaaattttt gaataaattc ttgagtgctt tggtggataa
     6361 ttaaatccat tttagtattt ctaccgcatt gttcacaaga agaaataatg attttttcaa
     6421 atctttctaa atcgatttta aaatttcttt gtgaaaaatt tgtaaaaacc aaatgtaatt
     6481 tttttactcc aagttcattt aagaaaggta gagttttttc taaaatttta atatctataa
     6541 tggctaaggc taagtttaat tcactttgtt ttatattttg tgattttttg tttaaaaatt
     6601 ttaaagtgca agaatttctt gttaaatttg tgattgtata gttgtaaaga aaattatctt
     6661 gtaaatttct aagatttagc tccgaatttt cctttactct tcttactttt aaatgattaa
     6721 agttttcacc ttgaagttgt ataaactctt ctccagcttg cttgttatac aaaaattgca
     6781 ttttataaat atctttctat taaaaaaggc aaaaacaata aaaaaatttc aaaaggtaaa
     6841 atcaaacaac taatccatct aaaagtggca tattttctaa atcttcttgc ttttttaaaa
     6901 caaacaaagt gaaaaattgc taaggcaaaa attaagatcc aagaaaaaat cattacccag
     6961 atattgacat tcatttgaaa ttgtttcatt gctgataaca agcaacctgt aaaaataatc
     7021 aaagctaaaa ataaataata aattggtaaa aataatcgta ttctgcgaat aaaaatgaat
     7081 tcggttttaa aatttccttg tgttagtata agataaaaaa gcattaaaaa accgctcgca
     7141 taaagactat aaagatgtaa agctaaaaag aattcgtaac tttgatccat tattttcctt
     7201 tgtttataaa atcagctaaa ttttgaattt gttcatcgct taaaaaacta tggtttttat
     7261 cttttatcat ttttattttt tgtataaaaa ttttattgcc caaggtttta atggccgtgc
     7321 tgtttttagg ttttaattcc cctttttctc catgacaagt ggcgcatttt tgtttatata
     7381 aagagttgat aatagtagga ttggcttcat gttcatcatc tgaactttgt gcttcatcat
     7441 ctacaggtaa aggcaggttg gagtcactta attctgtttt ttcatcgttt tgttctattt
     7501 ggactacttc ttgatctgta ttttgagtct tggaaatatt tttttcatca ttagaacagg
     7561 cagataaaac taataaaaaa aaacttaagg caattaaaat tttagctttt tgcattaaat
     7621 ctcctttgga tttataaaaa tttcttcatt ttttaatttg ttataaaaat ctatatcatt
     7681 ccattctgct ttaatgccat tagaaaattc tatgtcttga agtgaaattt ttggcattag
     7741 ctcactatag gcatcttctc taaaaccttg tgcatagcct gttcttgttt catgaacaat
     7801 gatgctttgt aaagttactc cttgttctcc atttatcatt tttgtttgtt ttaatagagc
     7861 atctataagt atgaaaaata cacgacaaaa attttcagca cttacattaa caggcaggca
     7921 aatccaacga cttgaatatt ttttcatttc ttctaaatat tttgcgtcat catatttaaa
     7981 aagagtgata gcatgatcaa aactatcaat aatttggcgt atataggttt ttaaaagtcc
     8041 aaaatcatag accattccag cattatctaa atatttgctt tcaagtaaaa cttcaacttt
     8101 gtaagaatgt ccatgaatgc tacttttgca acgcttagaa gaacaaaatc taacaatgtg
     8161 tgcgttttca aattcaaata attttcttat aatcatacac cctctttatc gttccaaaga
     8221 cgaatatgaa ttctatcaga ataattataa ccattcttaa tacaaaattc agcaattttt
     8281 tgagcatttt ttttaaggtt ttgctcattt tcacccatag gcatacaaaa aatttgattt
     8341 ggagcttctt ttagaatttc attgatttct aaaaatgaat tatcaagggt attggcatct
     8401 aaaacaaatt tataaaaact atcttttgcg taatttttaa atgcttttaa agctttaaaa
     8461 tttaatcgtt tatctttttt tatcccacta ttttggagtt taacgcttaa agcaaaaata
     8521 cattctttgt aaaaaggata tctatcaaaa tcaatttcta tacttccatt gctttcaaag
     8581 tgtatttcaa atttattttt taataacatt tggataaatt ttataaattc aggattttca
     8641 taatggatta atggctctcc acctgtgata acaactatag gattaaagtc ttgttttaat
     8701 tttatcactc tttttaaaag ttcattagca tttaaagttt cataactttc tttaaaatct
     8761 tttgtgaaaa cagctcttat cgtgtcacat ccaatgagag ttttatcgtt ttttgatatt
     8821 tttacattaa aacctaaaca gttgaaatta caaccagcaa aacgcataaa aatagctaat
     8881 tttccattat atttgccttc tccttgaatg cttaagaaac tttcaacaag ttgcaaaatt
     8941 aacctccagt ttgataaaaa gcacgagatg aggtttcatt atcaacaaca ctccatttat
     9001 ttttttctgg tttatttctt aatacttctt gtaatatttc tacagcggct ttaatatcac
     9061 cttttcgaac cgcttctttt atgcttaatg cttcatcaaa ataaaggcaa ggtattaaca
     9121 agccttcagc acttaagcgt atgcgattgc aagaatcgca aaattcatgg ctatgaggat
     9181 ctataattcc aaattcataa tcatctgcct tgtaaatact cacaggtgct ttttcatctt
     9241 tttttataag ttgaatttga tatttttgac tcaaaatttg tataatttca tctcttttta
     9301 atccttgtaa tttaccataa gcatgagtat tttccataaa ttctataaag cgaatttgag
     9361 ctttttttga ttttgcaaat tccaaaagag atatcagttc atcatcgttt aaatttttaa
     9421 gagctacagt attaagtttt actttcaaat ctagatttaa agcttcatca attccagata
     9481 aaacactatc taatacatct ttttgcgcaa gagtttttgc ttttttgtga tctagggtat
     9541 caagtgaaat attaagtcgt ttaagtccag cattttttag gtctttagca aagtctttta
     9601 gtaaaaatcc atttgtagtt atagcaaggt caatatcgct tttataatcg ctaatcattt
     9661 ttataaaaat acttaaatct tttcttaata aaggttctcc acctgttata cggatttttt
     9721 caattccttc gtctatagct gctttaacaa ataaaaaaag ttcttcgaag cttaataaat
     9781 tttcttttgg ctgataatcg aaaggaattt ttggcataca ataaaggcag cgaaagttac
     9841 atctttgtgt aactgaaatt ctaagataat ttatctttct accgaattga tctataagca
     9901 tttattttcc attctatttt attaatttct taaattttaa gacaagttct acatttccag
     9961 tgccaatgcg taaatcttta gcgatttgtt ctatgctttt tccttctttg aaaagatttt
    10021 ctattttttg ttcttctgta tcgtaatttg gcgtaagttt agccatgctt tgtgcttttt
    10081 gttccaaatt taaaagacga ttttgttgtt cattttgaaa atcttctatg atatgttcca
    10141 tagtttttag tgttcttaaa acaggagtga tttttgaact gatttgttta tcaagttcaa
    10201 tcataatttc ttcttttaaa agagaggttt tatagtcttc atcctcttcg ctatcatctt
    10261 taactcctaa ttctttacga aaataatgaa gttctttggt aatatcttct atcacatttt
    10321 gaagttttgc tatttttgca ttattttctc tttctttgat attcatatag gctagcattg
    10381 caattaaaag cacaattata aaaactaaat aaagcacatc atcactcatt cttggccttt
    10441 cttatttctt atcatatttc tttgaatttc aacaacaaaa gcatcaaaag ccattttgtc
    10501 ttcaggctta attttgataa tttttgccaa tgtttgactt tgagctttga taaaaatagc
    10561 tattttttga ttatttaaat caaatcttaa ataatattct ttatcttctt ctaaaatagt
    10621 atccaaaaaa tttagatatt caaaatttaa agattctatt accccttttt gcttaagtgg
    10681 tataagttct ttatttttat ctaaagaatt ttcaagcctt aaaatatctt cttttagact
    10741 taaaagaaga tcaaaaataa ttttttcacc ctcatcaaaa tcaatgcgta aagcaagttt
    10801 tttccatttt aaaatttgag aaattgctcc aagttttagg tattctccaa gaaaacggtt
    10861 attttctatt tcacaacatt ctaaatgagc ttcaaatcct gctttaaaaa gtgttaattc
    10921 cataataaat caatccaaat aaaaataaaa aagataatac ttaaataacc atttaaagta
    10981 aaaaatgctc tattaatatg agcaaaattt ttatggacaa tcctatgctc taaggctaaa
    11041 ataataccgc ttataattac tccaataagt gctatttttc caagtgctac accccaaact
    11101 tcccacacaa aaagaagcca aaataatact gctaaaatat ggcaaaaagc tgatataaat
    11161 aaagtagcct ttgagccaaa tttagcagga atagagtgaa gtcctacttt tttatcatac
    11221 tccatatctt gtaaagaata aagcagatca aacccagctg tccaaaaagt tacacctaaa
    11281 cataaaataa cgctataaat gtgaatttta cccataatta taacgcttcc tgcaataggt
    11341 gcaagtccta aacaaaatcc taaaactaaa tgtgctaaag aactaaagcg tttaaaagct
    11401 gaataaatag ccaacacaaa aagaacagga aaagacaaat aaaaagctaa ggtattaata
    11461 aaataagaac atgatataaa aataagtgca ttaataatga taaaaatcca tacgcttttt
    11521 ctacctattt ttccactgac attagggcga tttgcacaac gaggattatc tttatctata
    11581 tcttcatcca ttaaacgatt tgtagccatc gcaaaatttc ttgcacctac tgcacaaata
    11641 atgcctaaaa tcaatgcctt aaaaccaaac caagcagtgt cgtttgcaag ttttgatgct
    11701 acaatcatag aggaaaataa aaaaggtaaa gcaaaaatag aatgcttaaa tactacaagc
    11761 tctaaaatat ctttaaattt tatccagaat gtgttcattt ttctacttta aaatattttt
    11821 tgctatgatt ttactaaaat ttttataaat tttaggataa atattaaaat gttttttgaa
    11881 atagcattaa taggaacaac cgcgagtgga aaaacataca tagccaatac tttagcaaga
    11941 gaatttgatg ctgttgtttt aagtcttgat agtctttgtg tttataaaga gattaatata
    12001 gcaagtgcca agccttcaca agatgatctt gcgagtataa aatactttgg ggtaaattta
    12061 ttgagtgtga atgaacattt taatgttgag ttattcataa gagaatatca aaaagcaaaa
    12121 gaatttgctt tagctagaaa tttacctcta attatagtag gtggaactgg attttattta
    12181 aaaactatga tagatggttt aagtgaaaaa accttagaat caaagagttc tttaaataat
    12241 gatgaaattt atactctttt attaaatatt gatccaaact ataaaataga aaaaaatgat
    12301 acttatagat taaaaaaatg gctgggtatt tatgaacaaa caagagaaat tcctagtgaa
    12361 tttttaaaaa ggacgcaaaa aactggggta cttaaagata tagaaattta tgagctttca
    12421 tgggataaag aaattttaaa aaaacgcatt caaactagaa caaaagaaat gcttgataat
    12481 gggcttttag atgaggcaaa aattcttttt tctaaatttg atcataaact taaagcatta
    12541 aattctatag gtttgaaaga gtgtaaagaa tatttagatg gagaaatttc ctttaaagag
    12601 cttgaaaatt taatcacgat acatactaca caacttgcca aaagacaaag aacttttaat
    12661 aaaaaatttc aaagtaaagc cttggaattt gataaagctt tagctatttt aagaatgaaa
    12721 ttttcaatcg aaaaataaat gttctattag aatttttact cctaatataa ttaaaaccaa
    12781 tccgcctaaa agttcagctt tatttttaag ataaattcca aatttatttc ctatttttag
    12841 agcaatgatg cataaaatga aggtgataat acctattaaa aatatagcta ataataaatt
    12901 tacatttaaa aatgcaaaac tcacaccaac tgctagtgca tcgatactcg tagcaattgc
    12961 taaagctagc atggttttaa agccaaattg attggcatta ctatcgcaat tttcattttc
    13021 caatgactct ttgatcattt ttaatcctat taaagaaagt aaaataaaag ctatccaatg
    13081 atcaatactc gcaataaaag atgcaaaagt tatgcctata aaataaccaa tagttggcat
    13141 caaggcttga aatccaccaa aataaattcc aacaataaga taatgtttta aatgtagttt
    13201 tttaacacta aaacctttgc atagcgatac agcaaaagca tccattccta aagcacagga
    13261 taaaaaaata agactataaa aatccataat aaatcctaaa attttataaa aaattgaaga
    13321 tgaaattata att
//
LOCUS       DAZBIH010000037        12991 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.037, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000037 DAZBIH010000000
VERSION     DAZBIH010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12991
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.037"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1747
                     /locus_tag="ACHFOB_000910"
     CDS             <1..1747
                     /locus_tag="ACHFOB_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HFN5799721.1"
                     /translation="LKINTHYEINLSKQEILKEEIFKTKNSKMKLKSFELRALQCAFV
                     MDEISHFVRKGLKPENIAVITPDESFCEFLRLFDKDNMLNFASGISIKESLFYQKFQA
                     LYESASSASFVYKNQEDYFEDTQMIFDYHNTLLHSLKLDFIEFKKYFDEKCDFEYFEK
                     LLALFLENEKQELIYLIRKELYFIKDLLKNQSLTLKELIHLFFMQISQLSLSDVGGGK
                     VTVMGLLESRGLCFDGVILVDFNEEFIPKRSVNELFLNNEVRKKAGLISYDRRENLQR
                     FYYESLMKNALEVSICFVENEEKSKSRFLDELDFDFFYETHIHQKAYLNALKLDYEGI
                     KPNLTPIKAPILKHNPFEFPLSFSRFNLLENQKRTYYYRYILNLAEPRVLSEESKAKN
                     QGNFIHKMLEIYYKNYANNDFDIKVFANLLDKEYQKYNISELDLEVFKLKFIQFAKNE
                     KEHFSKGFYVAHTELELNNILKLGTDSIKLKGTIDRIDSSKEGNLIIDYKSGKVPSNS
                     YQLAFYQALYDENASVGFYDLNSMQILHQKAKSLDELRERLKDLVLMSKEEIEFENEQ
                     DEYCPYKLIYKKELK"
     gene            1744..4509
                     /locus_tag="ACHFOB_000911"
     CDS             1744..4509
                     /locus_tag="ACHFOB_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RecB-like helicase"
                     /protein_id="HFN5799722.1"
                     /translation="MSQFEPFLALEASAGSGKTFALSVRFVALILKGARINEILALTF
                     TKKAANEMQKRIIETFLNLEKENKTSECNELCKLLGKDKEELISLRDAKKEEFLRTEL
                     KISTFDAFFGKILRVFALNLGLSSDFTMSEERLDVREIFLKLLKKDELKDLAYYINLV
                     DEKENFFNELEKFYENAYFQNRPKILNPTKAYINKAYSELRSYCLGLTHVKNYKNLCD
                     NFKSEVLDLSVFMQSSFMTKFESTKYLQDLESTNLHFSAKRMELINALNTYAIELENY
                     KIANLMNLLNHYSEAKNIFHKDKNTLNFQDVSKKVYELITSEFKDMIYFRLDGFISHL
                     LIDEFQDTSVIQYQILRPLIAELVSGEGAKKNRTFFYVGDKKQSIYRFRKGKKELFDL
                     LKQEFSQIKSDSLNTNYRSKELLVDFVNETFKEKIKDYKEQFALESKKGGFVRIVESK
                     EQKVKNQAQEIKEKTLETLFEQINFLRSKNISYDDICILCWKNSDADMVLDFLREQKI
                     PAFTQSNVLLENKASVRLVLEYAKYCIFGDEFYLVFLKELLGFEPRKIALDFSKNAME
                     NVLFLIKELKLDLNDIALIQFIEYAKTKENFLKLLFEPCALKIVSEQNMGISIMSVHK
                     SKGLEFDHVILLDSLSKNNSNNEDIMLEYDINQGWQLHIKDKIRELTKEPIYTLFKEN
                     ITRANYEDDINKLYVAFTRAKESLIIIKRNEESVNGNYPSYFKGGFLNIHSQERGFLE
                     SKEQILSVKKESIQTLQKFEKISPQEVQSEEKLDSKELYFGNTFHFFMQNLKLPKGEN
                     FQILTQRCKSKFRHFLDESDFEKLFKRIEILLKNTQFQNLIGDGKLLKEQALSFNGEI
                     KQLDLLALKDEEAFIIDYKTGLAMQDKHKEQVRTYKIAISEILKKDKVHAFIVYCLEN
                     EIQILEI"
     gene            4593..5018
                     /gene="rplM"
                     /locus_tag="ACHFOB_000912"
     CDS             4593..5018
                     /gene="rplM"
                     /locus_tag="ACHFOB_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HFN5799723.1"
                     /translation="MTKITKPNEVKREWIVLDAEGKRFGRLLTEVATILRGKNKPCFT
                     PNVDCGDYVIIINASKAVFTGANKAEDKLYHRHSGYFGSVKSEKFGDLLEKNPAKLYK
                     LAVRGMLPKTNLGRAMLKKLKIYAGSEHPHTAQIAKEGK"
     gene            5021..5410
                     /gene="rpsI"
                     /locus_tag="ACHFOB_000913"
     CDS             5021..5410
                     /gene="rpsI"
                     /locus_tag="ACHFOB_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HFN5799724.1"
                     /translation="MATTYATGKRKTAIAKVWVKPGSGKISVNGVDLNTWLGGHEAIK
                     LKVVQPLLVTKQETSMDIKATTLGGGYSAQAEALRHGISRALAAMDADFRALLKPKGL
                     LTRDSRTVERKKYGRRKARRSPQFSKR"
     gene            5536..6495
                     /gene="cadF"
                     /locus_tag="ACHFOB_000914"
     CDS             5536..6495
                     /gene="cadF"
                     /locus_tag="ACHFOB_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibronectin-binding outer membrane protein CadF"
                     /protein_id="HFN5799725.1"
                     /translation="MKKILLCLGLASVLFSADNNVKFEITPTLNYNYFEGNLDMDNRY
                     APGIRLGYHFDDFWLDQLEFGLEHYSDVKYTNTNKTTDITRTYLSAIKGIDVGEKFYF
                     YGLAGGGYEDFSNAAYDNKSGGFGHYGAGVKFRLSDSLALRLETRDQINFNHANHNWV
                     STLGISFGFGGKKEKAVEEVADTRPAPQAKCPVEPREGALLDENGCEKTISLEGHFGF
                     DKTTINPTFQEKIKEIAKVLDENERYDTILEGHTDNIGSRAYNQKLSERRAKSVANEL
                     EKYGVEKSRIKTVGYGQDNPRSSNDTKEGRADNRRVDAKFILR"
     gene            6495..7136
                     /locus_tag="ACHFOB_000915"
     CDS             6495..7136
                     /locus_tag="ACHFOB_000915"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN5799726.1"
                     /translation="MNKTILFDLDGTLIDSTDAILNSFQGAFKALGLTSKNNEEIKNL
                     IGYPLEQMFRMLYPDKVNLSKEFVLSYREIYAQIYLEQTTLLPKAKEALELGSEIADI
                     GIVTTKGGKFTPILLDYLGVKKFFKTLITLEDVTNPKPSSEPIILALKRLNKTQENAY
                     MIGDTILDIQAAISANITPLALTCGYGNENELKTHSMVFLNAYEAVNYIARLN"
     gene            7229..10789
                     /gene="nifJ"
                     /locus_tag="ACHFOB_000916"
     CDS             7229..10789
                     /gene="nifJ"
                     /locus_tag="ACHFOB_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016903 - oxidoreductase activity, acting
                     on the aldehyde or oxo group of donors [Evidence IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HFN5799727.1"
                     /translation="MGKIMKTMDGNEAAAYAAYAFTEVAGIYPITPSSPMADYTDMWA
                     AAGKKNLFGVPVKIVEMQSEAGAAGSVHGSLQAGALTTTYTASQGLLLKIPNMYKIAG
                     QLLPCVIHVAARSLAVQALSIFGDHQDIYAARQIGFAMLCSHSVQETMDLAGVAHLAA
                     IKGRVPFLHFFDGFRTSHEIQKVEVMDYAHFDRLLNREALLEFRNNALNPENPKTRGT
                     AQNDDIYFQTREVSNRFYDALPDVVNEYMQEISKITGREYKPFTYYGHKEPERVIVAM
                     GSVTQALEEVVDYLNAKGEKVGILKVYLYRPFSLKYFFDVMPKSVKKIAVLDRTKEPG
                     SLGEPLYLDVKSAFYGRENAPVIVGGRYGLSSKDVDPAQMIAVFENLKLDNPKDGFTV
                     GIVDDVTHTSLSTGEKISLGDESTIECLFYGLGADGTVGANKNSIKIIGDKTDFYAQA
                     YFAYDSKKSGGYTRSHLRFSKKPIRSTYLVSTPHFIACSVAAYLEIYDVLAGIRKGGT
                     FLLNSIWNAEETIRQLPDAVKKTLAEKEVNFYIINATKLARDIGLGNRTNTIMQSAFF
                     KLAKIIPYEDAQKYMKELAYKSYSKKGDAIVEMNYKAIDVGADGLVKVEVDPNWKNLE
                     LKEKEQTNAYKGTEFVEKIVKPMNAAKGDDLPVSAFLGYEDGSFEHGTTEYEKRGVGV
                     MVPRWIEANCIQCNQCASVCPHAVIRPFLINDEEMANAPRGVKDHALEAKGTKGEKLS
                     FKIQVSPLDCTGCELCVHECPTKEKSLVMVPLQEEMDFGEQENADYLFKEITYKDDIL
                     NKETTKGAQFAQPLFEFHGACPGCGETPYITLITRLFGERMIVANATGCSSIYGGSAP
                     STPYRKSVKNGHGPAWGNSLFEDNAEFGLGMKIATENTRHRIEHIMNESMQEVPNALS
                     ALFKDWIANKDNGAMSVEIKDKMIPILEQNKNIKAVQDILELKQYLSKKSHWIFGGDG
                     WAYDIGYGGLDHVLASGENVNILVLDTEVYSNTGGQSSKSSRTGAVAQFAAAGKPIQK
                     KDLGQIAMTYGYIFVAQVNSTANYAHLIKAITAAEAYDGPSLVICYSPCIAHGIKGGL
                     GYSGEQGELATKCGYWPLYTFDPRLEEQGKNPLTLTGKEPDWDLYEQFLMNEVRYNSL
                     KKANPEHAAELFERNKKDAQRRYRQLKRIAMADYSNEVES"
     gene            10813..11124
                     /locus_tag="ACHFOB_000917"
     CDS             10813..11124
                     /locus_tag="ACHFOB_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HFN5799728.1"
                     /translation="MCFSTLFAQDNFEEYFKLIDKENRINFNTLQNPFVNPTFEKLRH
                     IKITAIMLDKVKIYDRWYKKGDMIDDAIIYEINTKEIKFQYDNLEIAIQINKNDKINI
                     N"
     gene            11102..12514
                     /gene="mshL"
                     /locus_tag="ACHFOB_000918"
     CDS             11102..12514
                     /gene="mshL"
                     /locus_tag="ACHFOB_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0019867 - outer membrane [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pilus (MSHA type) biogenesis protein MshL"
                     /protein_id="HFN5799729.1"
                     /translation="MIRLILINILFCHYLYALDCQKRLFDISINEKLSIQESLDELAK
                     YCSFSIIVKDKIAKEKLEILQNSVNIHQMSLDEIFNFFIKEHDLSYDFDGKILRISGI
                     NTKIFKISYITSIREGQSITKASVDAKPRQSEYSGSFDDAEDNMIKSMEKFDFWQNIE
                     KEIIVLLKNSHEDYEAKTPIINPNAGLIIVTGTNSQLKSVKNYLQKLENRLKKQVIID
                     VSILAVSLNENHSSGINWQNFNIGLNSQVNNENSFIQFQNGQGFVKNLGLRANLNFDS
                     IINFLSQNGKTSVLSNPKLMALNNQQAIISVGDTINYQVKESSKGTENGTTVSESYNN
                     YSIFVGILLNILPEISDDGKIMLRINPSLSDFKYPEDNKRQKEPRTIAPDTIQKKLSS
                     VVQVENNQTLILGGLISHDKSNEKNSINFLSKIPILGSLFKGEVLNSKATEIVFIITP
                     SIVDSVNAPSLKDLGFKHYE"
     gene            12507..>12991
                     /locus_tag="ACHFOB_000919"
     CDS             12507..>12991
                     /locus_tag="ACHFOB_000919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5799730.1"
                     /translation="MSKIIPFREEIFHQINQILESQKAFIFLWGKSGSGKSVLLQRLA
                     KKYNVDFINENFKDQSFLKEKIEFLISQGQSLIILDEVGMYDYAILESIRIYSDSISF
                     VLSSHKKLNILKKEHFKSRLSACFKLKNISLLELDDYIKLKFGMNFSNKCLKFLQKIS
                     QG"
BASE COUNT         4779 a         1593 c         2331 g         4288 t
ORIGIN      
        1 tttaaaaata aacactcatt atgaaatcaa tctttcaaaa caagagatct taaaagaaga
       61 aatttttaaa acaaaaaatt caaaaatgaa actcaaatct tttgaattaa gggctttgca
      121 atgtgctttt gttatggatg aaatttcaca ttttgtacgc aaaggtttaa agcctgaaaa
      181 tattgcagtt ataactccag atgaaagttt ttgtgagttt ttaagacttt ttgataaaga
      241 caatatgctt aactttgcaa gtggaattag tattaaagag agtttgtttt atcaaaaatt
      301 tcaagcactt tatgaaagtg ctagtagtgc ttcttttgtc tataaaaatc aagaggatta
      361 ttttgaagac acgcagatga tttttgatta tcacaatacg cttttacatt ctttaaaact
      421 tgattttata gagtttaaaa agtattttga tgagaaatgt gattttgaat attttgaaaa
      481 attacttgct ttgtttttag aaaatgaaaa gcaagagctt atttatttga tacgaaaaga
      541 actttatttt attaaagatt tattgaaaaa tcagtcttta actcttaaag agttgatcca
      601 tctttttttc atgcaaattt cacaactttc ccttagtgat gtaggtggag gtaaggttac
      661 ggtaatggga cttttagaaa gtcgtgggct ttgttttgat ggagtgattt tggttgattt
      721 taatgaagaa tttattccta aaagaagtgt taatgagctt tttttaaaca atgaagtgcg
      781 taaaaaagca ggattgatta gctatgatag aagagaaaat ttacaaagat tttattatga
      841 aagcttgatg aagaatgctt tagaagtaag tatttgcttt gtggaaaatg aagaaaaaag
      901 caaatcacgt tttttagatg aacttgattt tgactttttt tatgaaactc atatccacca
      961 aaaagcttat cttaatgctt taaaattaga ctatgaaggc ataaaaccta atctaactcc
     1021 tataaaagct cctattttaa agcataatcc tttcgagttt ccgctttctt ttagtcgttt
     1081 taatttattg gaaaatcaaa aaagaactta ttattatcgt tatattttaa atttagcaga
     1141 acctagggtt ttaagcgagg aaagcaaagc gaaaaatcaa ggaaatttta tccataaaat
     1201 gcttgaaatt tattataaaa attatgcaaa taatgatttt gatataaaag tttttgcaaa
     1261 tttattggat aaagaatatc aaaaatacaa tatcagtgaa cttgatcttg aagtatttaa
     1321 attaaaattt atacaatttg ctaaaaatga aaaagagcat ttttcaaaag gcttttatgt
     1381 cgcacataca gagcttgagt taaacaatat tttaaagctc ggaacagata gtataaaact
     1441 taagggtact atagatcgta tcgatagttc aaaagaaggt aatttgatta ttgattataa
     1501 aagtggaaaa gtgccaagta attcttatca acttgctttt taccaagctt tatatgatga
     1561 aaatgcaagc gtgggttttt atgatttaaa tagtatgcaa atattgcatc aaaaagccaa
     1621 aagtttagat gagctaagag aaagacttaa agatttagtt cttatgagta aggaagaaat
     1681 agagtttgaa aatgaacaag atgagtattg tccttataaa ctcatttata aaaaggaatt
     1741 aaaatgagtc aatttgagcc ttttttggca ttagaagcga gtgcaggaag cggaaaaacc
     1801 tttgccctga gtgtgcgttt tgtagcactt attttaaaag gagctaggat taatgaaatt
     1861 ttagctttga cttttaccaa aaaagctgct aatgaaatgc aaaaaagaat tattgagact
     1921 tttttaaact tagaaaaaga aaataaaacc agtgaatgca atgaactttg caagctttta
     1981 ggtaaagata aagaagagct tatttcttta agagatgcta aaaaagaaga atttttaaga
     2041 acagagttaa aaatcagtac ttttgatgct tttttcggaa aaattttgcg tgtttttgct
     2101 ttaaatttgg gcttaagtag tgattttaca atgagtgaag agaggcttga tgtaagagag
     2161 atttttttaa aacttcttaa aaaagatgaa ttaaaagatt tggcttatta tattaattta
     2221 gttgatgaga aagaaaattt ttttaacgag cttgaaaaat tttatgagaa tgcttatttt
     2281 caaaatcgtc ctaaaattct aaatccaact aaagcttata tcaataaagc ttatagtgag
     2341 ttaagaagtt attgtttggg tcttactcat gtaaaaaatt ataaaaattt gtgtgacaat
     2401 ttcaaaagtg aagttttaga tttatccgtg tttatgcaat caagttttat gacaaaattt
     2461 gaaagtacaa aatatttaca agatttagaa agtactaact tgcattttag tgcaaaaaga
     2521 atggagctta taaatgcttt aaatacctat gccatagagc ttgaaaatta taaaattgct
     2581 aatttaatga atcttttaaa tcattatagt gaagctaaaa atatatttca taaagataaa
     2641 aataccttaa atttccaaga tgtgagtaaa aaagtttatg agttaataac cagtgaattt
     2701 aaggatatga tttattttcg tttagatggt tttatttcgc atttgcttat tgatgaattt
     2761 caagatacaa gcgtgatcca atatcaaatt ttacgccctt tgatcgctga gcttgtttca
     2821 ggagaagggg ctaagaaaaa tcgcactttt ttttatgtag gagataaaaa acaaagtatt
     2881 tatcgctttc gtaaaggaaa aaaagaatta tttgatttgt taaaacaaga atttagtcaa
     2941 attaaaagtg atagtttaaa tactaattat cgttctaaag agcttttggt tgattttgtt
     3001 aatgaaactt ttaaagaaaa aatcaaagat tataaagagc aatttgcctt agaaagtaaa
     3061 aaaggcggtt ttgtgcgtat tgtggaatct aaagaacaaa aggttaaaaa ccaagcccaa
     3121 gaaatcaagg aaaagacttt agaaacttta tttgagcaaa ttaatttttt aagatctaaa
     3181 aatatttctt atgatgatat ttgtattttg tgttggaaaa atagcgatgc agatatggtt
     3241 ttggattttt taagagagca aaaaattccc gcatttactc aaagtaatgt tttgcttgaa
     3301 aataaagcaa gcgtaagact tgttttagaa tatgctaaat attgtatttt tggcgatgag
     3361 ttttacttgg tatttttaaa agaactttta ggttttgagc ccagaaaaat cgcccttgat
     3421 ttttcaaaaa atgctatgga aaatgtactt tttttaataa aggaattaaa acttgattta
     3481 aatgatatcg ctttaataca atttatcgaa tatgctaaaa ctaaggaaaa ttttttaaaa
     3541 cttttatttg agccttgcgc tttgaaaata gtaagcgaac aaaatatggg tattagtatt
     3601 atgagtgtgc ataaatctaa gggtttggaa tttgatcatg tgattttgct agatagttta
     3661 tctaaaaaca attcaaacaa tgaagatatc atgcttgaat atgatatcaa tcaaggttgg
     3721 caactccata ttaaagataa aattcgagag cttactaaag agcctattta cacccttttt
     3781 aaagaaaata ttacaagagc aaattatgaa gatgatatca ataaactcta tgtggctttt
     3841 acaagagcta aggaaagttt gatcatcata aaaagaaatg aagaaagtgt aaatggaaat
     3901 tatccaagtt attttaaggg gggattttta aatatacatt ctcaagagag aggtttttta
     3961 gaaagcaaag aacaaatttt aagcgttaaa aaagaaagca ttcaaacttt gcaaaaattt
     4021 gaaaaaatta gcccacaaga agttcaaagt gaagaaaagc ttgatagtaa agagctatat
     4081 tttggaaata cttttcactt ttttatgcaa aatttaaaac tccctaaggg tgaaaatttt
     4141 caaatactta ctcaaagatg caagagtaaa tttagacatt ttttagatga gagtgatttt
     4201 gaaaagcttt ttaaaagaat tgaaatttta cttaaaaata ctcaatttca aaatttgatt
     4261 ggtgatggaa agcttttaaa agaacaagct ttgagtttta atggagaaat taaacaatta
     4321 gacttgcttg ctttaaaaga tgaagaagct tttataattg attataaaac aggtcttgct
     4381 atgcaagata aacataaaga gcaagtaaga acttataaga tcgccattag tgaaattttg
     4441 aaaaaagata aagtacatgc ttttatagtt tattgcttgg aaaatgaaat tcaaattttg
     4501 gaaatataaa ctttattttt acttaaatta agtaaaaatt aatattattt tttatacaat
     4561 cacattttaa atttttggca aaggtaaaaa ttatgacaaa gataacaaag ccaaacgaag
     4621 taaaacgaga atggattgtt ttagacgcag aaggcaaacg ctttggtcgt cttttaactg
     4681 aagtagcaac aattttgaga ggtaaaaaca agccttgctt tactccaaat gttgattgtg
     4741 gtgattatgt aattatcatc aatgcttcaa aagctgtatt tacaggtgct aataaagcag
     4801 aagataagct ttatcataga cattcaggat attttggaag tgtaaaaagc gaaaaatttg
     4861 gtgatttact tgaaaaaaat cctgcaaaat tatataaatt agcagttaga ggtatgcttc
     4921 ctaaaacaaa tttgggcaga gctatgctta aaaaattaaa aatctatgcg ggtagtgagc
     4981 acccacacac tgcgcaaatt gctaaagaag gaaaataatc atggcaacaa catacgcaac
     5041 aggtaagaga aaaactgcta tcgcaaaggt atgggtaaaa ccaggtagtg gtaaaattag
     5101 tgttaatggt gttgatttaa acacttggct tggtggacac gaggcgatta agcttaaagt
     5161 ggttcaacct ttacttgtga ctaaacaaga aacttcaatg gatattaaag caactacttt
     5221 aggcgggggc tatagtgctc aagctgaagc tttaagacat ggaatttcaa gagctttagc
     5281 agctatggat gctgatttta gagccttatt aaaacctaaa ggacttctta ctagagatag
     5341 tagaactgtt gagcgtaaaa aatatggacg ccgcaaagca agaagaagcc cacaattctc
     5401 taaacgttaa tattttttgg tgggattttc ccacctttct acaatttttt ataaaactca
     5461 tccttttttc tgtcatttat gatataattg caaaatttaa atttttattt tataacacaa
     5521 tgaaaggttt tttctatgaa aaaaatatta ttatgtttag gtttggcaag tgttttattc
     5581 agtgctgata acaatgtaaa atttgaaatc actccaactt taaactataa ttactttgaa
     5641 ggtaatttag atatggataa tcgttatgca ccagggatta gacttggtta tcattttgac
     5701 gatttttggc ttgatcaatt agaatttggg ttagagcatt attctgatgt taaatataca
     5761 aatacaaata aaactacaga tattacaaga acttatttga gtgctattaa aggtattgat
     5821 gtaggtgaga aattttattt ctatggttta gcaggtggag gatatgagga tttttcaaat
     5881 gctgcttatg ataataaaag cggtggattt ggacattatg gcgcgggtgt aaaattccgc
     5941 cttagtgatt ctttggcttt aagacttgaa actagagatc aaattaattt taatcatgca
     6001 aaccataatt gggtttcaac tttaggtatt agttttggtt ttggtggcaa aaaggaaaaa
     6061 gctgtagaag aagttgctga tactcgtcca gctccacaag caaaatgtcc tgtagaacca
     6121 agagaaggtg ctttgttaga tgaaaatggt tgcgaaaaaa ctatttcttt ggaaggtcat
     6181 tttggttttg ataaaactac tataaatcca acttttcaag aaaaaatcaa agaaattgca
     6241 aaagttttag atgaaaatga aagatatgat actattcttg aaggacatac agataatata
     6301 ggttcaagag cttataatca aaagctttca gaaagacgtg ctaaaagtgt tgctaatgaa
     6361 cttgaaaaat atggtgtaga aaaaagtcgc atcaaaacag taggttatgg acaagataat
     6421 cctcgctcaa gcaatgacac taaagaaggt agagcggata atagaagagt ggatgctaaa
     6481 tttattttaa gataatgaat aaaactattt tatttgattt agatggcact ttaattgatt
     6541 ctactgatgc tattttaaat tctttccaag gagcttttaa agcccttgga ttaacttcta
     6601 aaaataatga agaaatcaaa aatctcatag gttatccttt agagcaaatg tttagaatgc
     6661 tttatccgga taaagtaaat ttaagtaaag aatttgtatt atcttatcgt gaaatttatg
     6721 cacaaattta tttagaacaa accactcttt tgcctaaagc aaaagaagca ttagaacttg
     6781 gaagcgaaat tgcagatatt ggtatagtta caacaaaagg aggtaaattt actccgattt
     6841 tacttgatta tttgggagtt aaaaaattct ttaaaacttt aattactctt gaagatgtca
     6901 caaatccaaa gccaagttcc gaacctataa ttttagcctt aaaaagactc aataaaactc
     6961 aagaaaatgc ctatatgata ggcgatacaa tattagatat tcaagctgca atttctgcta
     7021 atatcactcc tttggcctta acttgtggtt atggcaatga aaatgaatta aaaacccatt
     7081 ctatggtatt tttaaacgca tatgaggctg ttaattatat agctagatta aactaatttc
     7141 aagttttcgt taaacgcctt ttaagagaat ttatagtaaa ttgatagcta aaaaattata
     7201 aaaattatca atataaagga aggtctcaat gggtaaaatt atgaaaacta tggacggaaa
     7261 tgaggctgct gcatacgctg cgtatgcttt tactgaagtt gctggaattt atcctattac
     7321 acctagttct cctatggctg attacaccga tatgtgggca gctgcaggca aaaaaaatct
     7381 ttttggagtt cctgtaaaaa tcgtagaaat gcaaagtgaa gcaggtgctg caggtagtgt
     7441 gcatggatct ttgcaggctg gggctttgac tacaacttat acagcttctc aaggattact
     7501 ccttaaaatt ccaaatatgt ataaaatagc aggtcaatta ctcccctgtg taatccacgt
     7561 agcagcgcgt tctttggctg ttcaagcttt gtctatcttt ggtgatcatc aagatattta
     7621 tgcagcaaga caaattggtt ttgctatgct ttgttcgcat tctgtgcaag aaaccatgga
     7681 cttagctggt gtagcacatt tagctgcaat taagggaaga gtgccatttt tacatttttt
     7741 tgatggtttt agaacaagtc atgaaattca aaaagttgaa gtgatggatt atgcgcattt
     7801 tgatagatta ttgaatagag aagctttgct tgaatttaga aataatgctt taaatccaga
     7861 aaatccaaaa acacgcggaa cagcacaaaa tgatgatatt tattttcaaa ctagagaagt
     7921 aagcaatcgt ttttatgatg ctttgcctga tgttgttaat gaatatatgc aagaaatttc
     7981 aaaaatcaca ggtagagaat ataaaccatt tacttattat ggacacaaag agccagagcg
     8041 tgtgattgtt gctatgggtt ctgtaaccca agcacttgaa gaggtagtgg actatcttaa
     8101 tgctaagggt gaaaaagtag ggattttaaa agtttatctt tatcgcccat ttagtttaaa
     8161 atatttcttt gatgttatgc caaaatcagt gaaaaaaatt gcagttttag atagaaccaa
     8221 agaaccagga agtcttgggg agccacttta tcttgatgta aaatcagctt tctatggaag
     8281 agaaaatgct cctgttatag taggtggaag atacggactt tcttcaaagg atgttgatcc
     8341 tgctcaaatg atagcagtat ttgaaaatct taaacttgat aatccaaaag atggctttac
     8401 tgtaggtata gttgatgatg taactcatac ttcactgagt actggagaga aaatttcact
     8461 tggagatgaa agtacgatcg aatgtttatt ttacggactt ggtgctgatg gaactgtggg
     8521 cgcaaataaa aactcgatta aaatcatcgg agataaaacg gatttttacg ctcaagctta
     8581 ttttgcttat gattctaaaa aatcaggggg ttatacaaga agccatttga gattttctaa
     8641 aaaacctatc cgttcaactt atcttgtttc aactccgcat tttatcgctt gttcggtagc
     8701 ggcttatttg gaaatttatg atgttttagc aggaattcgc aaaggaggaa ccttcctttt
     8761 aaatagtatt tggaatgctg aagaaaccat aagacaactt ccagatgcag taaagaaaac
     8821 tttagctgaa aaagaagtaa atttttatat tatcaatgca accaaactag ctcgtgatat
     8881 aggtttggga aatcgtacaa ataccattat gcaatcagcc tttttcaaac ttgcaaaaat
     8941 cattccttat gaagatgcac aaaaatacat gaaagagctt gcgtataaat cttatagtaa
     9001 aaaaggcgat gctattgtag aaatgaatta caaagctatt gatgtggggg ctgatggact
     9061 tgtaaaagtt gaagtggatc caaattggaa aaatttagag cttaaagaaa aagaacaaac
     9121 caatgcctat aaaggcactg aatttgttga aaaaatcgta aaacctatga acgcagctaa
     9181 gggtgatgat ttacctgttt cagccttttt aggttatgaa gatggaagtt ttgaacacgg
     9241 cacaaccgaa tacgaaaaac gcggtgttgg ggttatggta ccaagatgga tagaggcaaa
     9301 ttgtattcaa tgtaatcaat gcgcttcagt ttgtccacat gctgttatca gaccattttt
     9361 gattaatgat gaagaaatgg caaatgcacc tcgtggagta aaagatcatg ctttagaagc
     9421 taaaggaacc aaaggagaaa aattaagctt taaaattcaa gtttctccac ttgattgtac
     9481 aggctgtgag ctttgtgttc atgagtgtcc tactaaagaa aaatctttgg ttatggtacc
     9541 acttcaagaa gagatggatt ttggtgagca agagaatgcg gattatttat ttaaagaaat
     9601 tacttataaa gatgatattt taaataaaga aaccacaaaa ggagcgcaat ttgcccaacc
     9661 tttatttgaa ttccatgggg catgtcctgg atgtggggaa actccttata ttactttaat
     9721 tacaagattg ttcggtgaaa gaatgattgt ggctaatgct acaggttgta gttctattta
     9781 tgggggttca gctccatcaa ctccttatag aaaaagtgtg aaaaatggac acggtcctgc
     9841 ttggggaaat tcactttttg aagacaatgc tgagtttggt ttgggtatga aaattgcaac
     9901 tgaaaacaca agacaccgca ttgaacatat catgaatgaa agcatgcaag aagtgccaaa
     9961 tgctttatcg gctcttttta aagattggat tgcaaataaa gataatggtg ctatgtctgt
    10021 ggaaattaaa gataaaatga tccctatttt agagcaaaat aaaaatatta aagcggtgca
    10081 agatatatta gagcttaaac agtatttaag taaaaaatct cactggattt ttggtggtga
    10141 tggttgggct tatgatatag gctatggtgg acttgatcat gttttggcaa gtggagaaaa
    10201 tgtaaatatt ttagtgcttg atacagaagt ttattctaat acaggcggtc aaagttcaaa
    10261 atcttctaga acaggggctg tggcacagtt tgcagcagca ggcaaaccta tacagaaaaa
    10321 agatctaggt caaattgcca tgacttatgg ttatattttt gtagcgcaag taaattcaac
    10381 ggcaaattat gcccatctta tcaaggctat cactgcagct gaagcttatg atggaccatc
    10441 tttggtgatt tgttattctc cttgtatagc tcatggtatt aaaggtgggc tgggttactc
    10501 aggagagcaa ggtgagcttg ctacaaagtg tggttattgg ccactttata cctttgatcc
    10561 tcgtttagaa gaacaaggaa aaaatccttt aactctaaca ggaaaagaac ctgattggga
    10621 tttatatgag caatttttaa tgaatgaagt gcgttataat tcacttaaaa aagcaaatcc
    10681 tgaacacgct gctgagcttt ttgaacgcaa taaaaaagat gctcaacgtc gctatagaca
    10741 acttaagcgt atcgctatgg ctgattatag caatgaggtt gaaagctgat aaaatatatt
    10801 tttagtgcaa cattgtgttt tagcactttg tttgcacaag ataattttga agagtatttt
    10861 aaacttatag ataaagaaaa tcgcataaat tttaatactc ttcaaaaccc atttgtgaat
    10921 cctacttttg aaaaattaag acatattaaa attactgcaa ttatgcttga taaagtaaaa
    10981 atttatgatc gatggtataa aaaaggtgat atgattgatg atgctataat atatgaaata
    11041 aatactaaag agattaaatt ccaatatgat aatttagaaa ttgcaatcca aataaataaa
    11101 aatgataaga ttaatattaa ttaacattct tttttgccat tatctttatg ctttagattg
    11161 tcaaaagcgt ctttttgata tcagtattaa tgaaaaatta agcatacaag aaagtcttga
    11221 tgagcttgca aaatattgtt cttttagtat tattgttaaa gataaaattg ccaaagaaaa
    11281 attagaaata ttgcaaaact ctgtcaatat tcatcaaatg agtttagacg aaatttttaa
    11341 tttttttatc aaagagcatg atcttagcta tgattttgat ggtaaaattt taagaatttc
    11401 aggcattaat acgaagattt ttaagataag ttatatcact tctatcagag aaggacaaag
    11461 tataactaaa gcgtctgtag acgctaaacc aaggcaaagt gaatatagcg gtagttttga
    11521 tgacgcagaa gacaatatga ttaaaagtat ggaaaaattt gatttttggc aaaatataga
    11581 aaaagagatt attgtattat taaaaaattc tcatgaagat tatgaggcta aaactcccat
    11641 tataaatccc aatgcaggtc ttattatagt aactggaaca aattctcagt taaaaagtgt
    11701 gaaaaattat ttgcaaaaac tagaaaatcg tcttaaaaaa caagttatta tcgatgttag
    11761 catacttgct gtgagtttaa atgaaaacca ttctagtggg attaattggc aaaattttaa
    11821 tataggttta aattcgcaag taaataatga aaattctttt attcagtttc aaaatgggca
    11881 aggttttgtt aagaatttgg gtttaagggc gaatttaaat tttgattcta ttattaactt
    11941 tctttctcaa aatggaaaaa ctagcgtgct ttctaatcca aagcttatgg ctttaaataa
    12001 ccaacaagcc attatttctg taggtgatac tataaattat caagttaaag aaagttctaa
    12061 aggcactgaa aatgggacta ctgttagtga aagttataac aattattcta tttttgtagg
    12121 cattttactc aatatcttgc ctgaaatttc tgatgatgga aaaataatgc tcaggattaa
    12181 tccaagctta agtgatttta agtatccaga agataataaa cgacaaaaag aaccaagaac
    12241 tattgctcct gataccatac aaaaaaagct ttctagtgtt gtgcaagtag agaataatca
    12301 aactttaatt ttaggtggat tgatttctca cgataaatct aatgagaaaa attctatcaa
    12361 ttttctatca aaaattccaa tcctaggttc tttgtttaaa ggagaagttt taaattctaa
    12421 agcaactgaa attgttttta ttatcactcc aagtatagta gatagtgtaa atgctccaag
    12481 tcttaaagat ctaggattta agcattatga gtaaaattat tccatttaga gaagaaattt
    12541 ttcatcaaat caatcaaatt ttagaaagcc aaaaagcttt tattttttta tggggaaaaa
    12601 gtggtagtgg taaaagtgta ttgttgcaaa gattggcaaa aaaatataat gttgatttta
    12661 ttaatgaaaa ttttaaagat cagagtttct taaaagaaaa aattgagttt ttgatttcac
    12721 aaggtcagag tttaatcatt cttgatgaag tgggaatgta tgattatgca atactagaaa
    12781 gcatcaggat ttatagtgat tctataagtt ttgttttaag ttctcataaa aagttaaata
    12841 tacttaaaaa agagcatttt aaaagtcgtt taagtgcttg ttttaaattg aaaaatatta
    12901 gtcttttaga acttgatgat tatattaaat tgaaatttgg aatgaatttt tcaaataaat
    12961 gtcttaagtt tttacaaaaa atttctcaag g
//
LOCUS       DAZBIH010000038        12914 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.038, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000038 DAZBIH010000000
VERSION     DAZBIH010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12914)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12914)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12914
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.038"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..247
                     /locus_tag="ACHFOB_000920"
     CDS             <1..247
                     /locus_tag="ACHFOB_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799731.1"
                     /translation="FLKEQRNNALKSEQEQILLWMNNFDFLKDHNLSLIQKEKDLFEK
                     DLKDLREIFKKNAFEIGIWWFSKEKEDLEKRINESLK"
     gene            244..1005
                     /gene="tlyA"
                     /locus_tag="ACHFOB_000921"
     CDS             244..1005
                     /gene="tlyA"
                     /locus_tag="ACHFOB_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HFN5799732.1"
                     /translation="MRFDFFVSKRLNISRNKALELIENEEVLLNGKSFKASFDVKNFL
                     ENLKKTQDLNPEDILLTDGLKLDLLSEIYVSRAALKLKNFLEENGIEIKHKNCLDIGS
                     STGGFVQILLENQALKITALDVGNNQLHLSLRTNEKIILHENTDLRTFKSEEKFELIT
                     CDVSFISLINLLYYIDNLALKEIILLFKPQFEVGKNIKRDKKGVLKDDKAILKARMDF
                     EKACAKLGWLLKNTQKSSIKGKEGNVEYFYYYIKN"
     gene            971..1825
                     /gene="ribF"
                     /locus_tag="ACHFOB_000922"
     CDS             971..1825
                     /gene="ribF"
                     /locus_tag="ACHFOB_000922"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003919 - FMN adenylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HFN5799733.1"
                     /translation="MLNIFTTISKINITSLAIGCFDGMHLGHLKLVKCLDENGALLVI
                     NKFKGQFLCSNRQKEEISGKKVIEVDFENIKSLDGKDFLSFLKKEFVNLKFIVVGYDF
                     SFGKNRAYDAKDIESLSGIKTIIVDEFSIGGVGVHASLIKDFLSKANLQKAKEFLGRD
                     YSIKGKMIKGQGLGSKELFATINLDCEGYFLPQNGVYATLLKSQRKIYKSVSFLGIRS
                     SDENFAIESHILEELGEKFTQGEFFELEFISFLRENQKFQDLKKLKNQIAKDIEQARE
                     LLRKNDER"
     gene            1812..2522
                     /gene="cmoA"
                     /locus_tag="ACHFOB_000923"
     CDS             1812..2522
                     /gene="cmoA"
                     /locus_tag="ACHFOB_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxy-S-adenosyl-L-methionine synthase CmoA"
                     /protein_id="HFN5799734.1"
                     /translation="MMKDELFKQSPKKQFEFDKSVASVFDDMINRSVPFYRENLELCG
                     NLLAKILSTNASVCDLGCSSANFLIFLANLRKDFKLFGVDNSASMLEVAKSKAKAYGL
                     DISFFEANLCEFDFFVCDVFVANYTMQFIRPPKRQELLDKIYKNLNSKGILIMSEKIL
                     YEDAFLSKNIIELYADYKEKQGYSKFEIAAKREALENVLIPYSQKENLNMLEKAGFKK
                     IESIFKWANFETFIAFKD"
     gene            complement(2512..2733)
                     /locus_tag="ACHFOB_000924"
     CDS             complement(2512..2733)
                     /locus_tag="ACHFOB_000924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HFN5799735.1"
                     /translation="MTMKITLFLSLIGIFFAACEQTKSVEYYQNHPEEAKKRSLECRH
                     KAIISQDCVNAYKVGFPKDEWEDENISNP"
     gene            complement(2724..3164)
                     /locus_tag="ACHFOB_000925"
     CDS             complement(2724..3164)
                     /locus_tag="ACHFOB_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EexN family lipoprotein"
                     /protein_id="HFN5799736.1"
                     /translation="MRRLSILLTILIVINITACDSKTENYYKNHPSEAKEKAKECKES
                     GTLSEDCINALKVGVKPTNEESKYSPNTPKKSDNQILETLKQNDLKKEKTTKDINQSS
                     ENNESIIIPPITETPSEIYPSKTTENNQSSIFSDDVNITQEKLP"
     gene            complement(3222..3854)
                     /locus_tag="ACHFOB_000926"
     CDS             complement(3222..3854)
                     /locus_tag="ACHFOB_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HFN5799737.1"
                     /translation="MEINALTITTLYIIGISAEGMTGALAAGRHKMDLFGVIFIALVT
                     AIGGGSIRDVLLGHYPLTWVKHPEYIILICFCALVATKIPRVVTKLETLFLTLDAIGL
                     VVFSILGAQIAIDQNHGFIIAVAAAVITGVFGGILRDILCMRIPLVFQKEIYAGIAII
                     AGAIYYSLIIWLELNALVCTLLTLFIGVFARLLAIKHQWSLPIFSYNEEK"
     gene            complement(3865..4515)
                     /locus_tag="ACHFOB_000927"
     CDS             complement(3865..4515)
                     /locus_tag="ACHFOB_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HFN5799738.1"
                     /translation="MKIFIFLLAISLNIFALEPYKPSADFSSYFNNINCSQILDKFFY
                     LNCYDYKLKGTKAVAYKVEASNLKDKQIKKRPRFEDDTNIPKKYRTTWSDYKNSSYTR
                     GHTAPNASFSFSKAAQNSVFLMSNITPQIAQINNKIWNEIEQRERNLAFKFQSIEVLN
                     LVLYDKEPQYIKNRIAIPSFYVKIIKTPKFKECYQVPNHEVNNENIKQYQINCDKF"
     gene            complement(4512..5138)
                     /gene="nth"
                     /locus_tag="ACHFOB_000928"
     CDS             complement(4512..5138)
                     /gene="nth"
                     /locus_tag="ACHFOB_000928"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HFN5799739.1"
                     /translation="MKRNLEIKELFLKHFDKPVTELKFSNLYELLVCVMLSAQCTDKR
                     VNLITPDLFKAYPDIKSLANANLSSLKTYIQTCSFFNNKAQNLIKMAKAVCENFGGEI
                     PLDEQNLKSLAGVGQKTAHVVLIEWCGANFMAVDTHVFRVSHRLGLSKAKTPEATEED
                     LTGIFKDNLNYLHQAMVLFGRYTCKAKKPLCKECFLNHLCKSKDKELK"
     gene            5219..6040
                     /gene="peb4"
                     /locus_tag="ACHFOB_000929"
     CDS             5219..6040
                     /gene="peb4"
                     /locus_tag="ACHFOB_000929"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase PEB4"
                     /protein_id="HFN5799740.1"
                     /translation="MKKFSLVAAALIAGVALNVNAATVATVNGKSISDAEVSEFFAPM
                     LRGQDFKTLPDNQKKALIQQYIMQDLILQDAKKQNLEKDPLYTKELDRAKDAILVNVY
                     QEKILNTIKIDAAKVKAFYDQNKDKYVKPARVQAKHILVATEKEAKDIINELKGLKGK
                     ELDAKFSELAKEKSIDPGSKNQGGELGWFDQSTMVKPFTDAAFALKNGTITTTPVKTN
                     FGYHVILKENSQAKGQIKFDEVKQGIENGLKFEEFKKVINQKGQDLLNSAKVEYK"
     gene            6040..7104
                     /gene="fbaA"
                     /locus_tag="ACHFOB_000930"
     CDS             6040..7104
                     /gene="fbaA"
                     /locus_tag="ACHFOB_000930"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase"
                     /protein_id="HFN5799741.1"
                     /translation="MGVLDIVKAGVISGDELNKVYDYAKAEGFAIPAVNVVGTDSINA
                     VLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILH
                     TDHAARKLLPWIDGLIEANAQYKKTHGQALFSSHMLDLSEESLEENLSTCEVYLQKLD
                     ALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFG
                     NVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGSGSELKDIKNAVSY
                     GVIKMNIDTDTQWAFWDGVREYELKNRAYLQGQIGNPEGDDKPNKKYYDPRVWLRSGE
                     ESMIKRLEIAFEDLNCINKN"
     gene            7199..8641
                     /locus_tag="ACHFOB_000931"
     CDS             7199..8641
                     /locus_tag="ACHFOB_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MotA/TolQ/ExbB proton channel family protein"
                     /protein_id="HFN5799742.1"
                     /translation="MDIKSDEISELVLPEGKDARGSLVYFKIIFIPAFLYILILLGYF
                     NVIDFKVELHTVIMTGVIFFTALIFARHSAEYAYSIFEQQKDEFKQALKRHIMRHFLA
                     IGKDTKSNANFDDFAYTYIKGARNENFASIGSAIFPMMGILGTFISIAFSMPNFSSSD
                     TAALEQEIADLLSGVGTAFYVSIYGIFLALWWMFFEKYGKSKIDRLLNRQKNATSGFF
                     WTKEELDQRYLTESLQHFEKIGAIFKQVSNDDFFAELDHAIDRKFGIFQDMLNIEEKA
                     IRLSGEHIKQTMGELSKAQRDQRDLGKLYSEMLNGIGLLNQNLKEINTRMSEQYNRLL
                     DISSDKIHHLDKTLSAFDEKVERFGKNFELYEKAMLESQEKVFEGFKASLFEGMHKFK
                     EVYEEEKSIDAKIKMMDELKKEMKALDEETSQMMSKLSGDENQNKGNETKQIEDFSES
                     KTEENQDEIQAEISKQESNDELKNEDKENK"
     gene            8638..9591
                     /locus_tag="ACHFOB_000932"
     CDS             8638..9591
                     /locus_tag="ACHFOB_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OmpA family protein"
                     /protein_id="HFN5799743.1"
                     /translation="MKNESKEDSNFWIAYADLMAGLLFVFILLIGAIVVKYVLTQSDL
                     KEIKDNLNKQEARLEESKEELRNKEAIVFKLSSDLNNASSALNLANSQKAELEANITN
                     YKQLSKDLNSTLDNKDKQILILLGQLEKKDEELKNLQEDFQKAKEKVQNLGFIRENLS
                     KELQSKLDNNITIDEKTGSISLPAEVLFDKDSYVLKNEAKASLRKILSEYFDAILEDP
                     KIFSNIENIIIEGHTDSDGSYIYNLDLSQKRAYEVMNFIYTFYKSDKLQKLLMASGRS
                     FSDPVFVNGVEDKDKSRRIEIKFSIKNDNALKDVEKFFEFH"
     gene            9578..10453
                     /locus_tag="ACHFOB_000933"
     CDS             9578..10453
                     /locus_tag="ACHFOB_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-aminocyclopropane-1-carboxylate
                     deaminase/D-cysteine desulfhydrase"
                     /protein_id="HFN5799744.1"
                     /translation="MNFIKTISPIQKINFNGFEFYIKRDDLLGEINGNKARKLAFYIH
                     QRYPKNQSFVSYGGSQSNALAALSIFAKQRSYKLVFACEKISTFLKNNPCGNYALALE
                     NGVDFVENIHSLSLKQFALSLCKKDDIFIEQGIANLEAQYGYMELAQEIQMQSQSLKL
                     DFDIFLPSGTGTSAAFLAKYSKFKVFTCACVGDIKYLKKQILTLDPSYDFSNLEFLTS
                     DKKYHFAKPYKEFYELYMDLKLKCNIEFDLLYDILGLSIALKQEWKKPLLYIHQGGIL
                     GNSTMLERYKFKKLV"
     gene            complement(10445..11788)
                     /locus_tag="ACHFOB_000934"
     CDS             complement(10445..11788)
                     /locus_tag="ACHFOB_000934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN5799745.1"
                     /translation="MQRQTWSSTLTYILTVAGATIGFGATWRFPYLVGENGGGAYVLV
                     FCIAMIIIGIPVILVENVIGRKAMTNSVDAFKQKWQSIGYMGLLGSFGIMAYYMVLGG
                     WVLVYIWELTLGNFSLANVVSKEFTHQFFNDKIAFNPLGVGIFTTVFVIINYIILKRG
                     IIDGIEKSVKFLMPLLFICLIIVVGRNLTLDGAMAGVKFYLEPDFSKILSPKLLIDVL
                     GQVFFALSLGFGVMITLSSHLNKNENMTKTAIYTGVLNTIIAVLAGFMIFPALFSAGL
                     APDSGPSLVFETLPIAFSHIHFGTIVCILFFVLLLIAALTTSLPIYQVIISVLEEKFK
                     YSKNLSINLTLGFIFILGNLPCILTYGPWRDIVIIKGKNIFDSFDFISGNILFVLTAF
                     FCCIYVGWILGKQESLKELSNNNTLKSSWFGIWFYYVKYIVPLIILIIFIYGILN"
     gene            complement(11839..12507)
                     /locus_tag="ACHFOB_000935"
     CDS             complement(11839..12507)
                     /locus_tag="ACHFOB_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HFN5799746.1"
                     /translation="MKIQSLQIGKIKNYKNFQSAFIKDTYLEETQIDFLGILDDQIAD
                     KIHHGGYHKAIFANSCQNYPIWERFLNKKLNFGSMGENLSIDGLCEQNVCIGDIHQIS
                     NAILQVSEPRKPCVKISKIHNNSNFTHEIFKTGLSGWYYKVLQVGQIRKYENIKILEK
                     NSTSLSVFELNQLFYSPHQALRQNPILLDKLEKLNSLISQNWHETIHKRLKNTYDISY
                     MDSL"
     gene            complement(12504..>12914)
                     /locus_tag="ACHFOB_000936"
     CDS             complement(12504..>12914)
                     /locus_tag="ACHFOB_000936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin fold domain-containing protein"
                     /protein_id="HFN5799747.1"
                     /translation="LGGLFGAKNFLNPLNFNTISASKSALSYDYINNFEQLKQEIQTN
                     TKPIMLDFTASWCENCKLLDELTFSDERIIQKMQNYKLIKVDVSENNNEQIKTMKEFN
                     VFGPPVLIFFENGKEKLKITGFISADDLLKKLEP"
BASE COUNT         4662 a         1629 c         2194 g         4429 t
ORIGIN      
        1 ttttttaaaa gagcaaagaa ataatgcctt aaaatccgaa caagaacaaa tacttttatg
       61 gatgaataat tttgattttt taaaagatca taatttaagt ttaattcaaa aagaaaaaga
      121 tctttttgaa aaagatctta aagatcttag agaaattttt aaaaaaaatg cttttgaaat
      181 aggcatttgg tggttttcta aagaaaaaga agacttggaa aaaagaataa atgagagttt
      241 aaaatgagat ttgatttttt tgtttcaaag cgtttaaata tcagtagaaa taaagcttta
      301 gagcttatag aaaatgaaga ggttttgctt aatggtaaaa gttttaaagc ttcttttgat
      361 gtgaaaaatt ttttagaaaa tttaaaaaaa acgcaagatt taaatcctga agatatactt
      421 ttaactgatg ggttaaaatt ggatctttta agtgaaattt atgtttcaag ggcggcttta
      481 aaattaaaaa attttttaga agaaaatggt attgaaataa aacataaaaa ttgtcttgat
      541 ataggatcta gtacgggtgg ttttgtgcaa attttacttg aaaatcaggc tttaaaaatc
      601 actgctcttg atgtaggtaa caatcaactc catctaagtt taagaacaaa tgaaaaaatt
      661 atcttgcatg aaaatacaga tcttagaacc tttaaaagtg aagaaaaatt tgaacttatt
      721 acttgtgatg tgagttttat ttctcttatt aatttacttt attatatcga taatttagct
      781 ttaaaggaaa ttatcttact ttttaagcct cagtttgaag tagggaaaaa tatcaaaaga
      841 gataaaaagg gtgttttaaa agatgataag gcaatcttaa aggcaagaat ggattttgaa
      901 aaagcatgtg ctaaattggg ttggctttta aaaaatacgc aaaaatcaag cattaaagga
      961 aaggaaggta atgttgaata tttttactac tatatcaaaa attaatatta cctctttagc
     1021 cataggttgt tttgatggta tgcatttagg acatctaaaa cttgtaaaat gtttagatga
     1081 gaatggggct ttattagtta ttaataaatt taagggtcaa tttctttgtt caaatcgtca
     1141 aaaagaagaa atttcaggaa aaaaagttat agaagtggat tttgaaaata taaaatcttt
     1201 agatggtaaa gattttttaa gctttttgaa aaaagaattt gtcaatttaa aatttatagt
     1261 ggtgggatat gatttttctt ttgggaaaaa tagggcttat gatgctaaag atattgagtc
     1321 tttaagtggg ataaaaacta taatagttga tgaatttagc ataggcggag taggtgttca
     1381 tgcaagttta attaaggatt ttttatcaaa agcaaatttg caaaaagcaa aagaattttt
     1441 aggaagagat tatagtatca aagggaagat gattaaagga caaggtttgg gctctaaaga
     1501 actttttgcg actataaatt tagattgtga aggttatttt ttgcctcaaa atggtgttta
     1561 tgctactttg ttaaaaagtc aaagaaaaat ttataaaagt gtgagttttt taggtataag
     1621 gtcaagcgat gaaaattttg ccatagaaag tcatatttta gaagaattgg gtgaaaaatt
     1681 cacacaaggg gagtttttcg aactcgagtt tatatctttt ctaagagaga atcaaaaatt
     1741 tcaagatcta aaaaagctta aaaatcaaat tgctaaagac atagagcaag ctagagaatt
     1801 attaaggaaa aatgatgaaa gatgaacttt ttaaacaaag ccctaaaaaa caatttgaat
     1861 ttgataaaag cgtggctagt gtttttgatg atatgatcaa tcgttctgtg ccattttata
     1921 gagaaaattt agaactttgt ggcaatttat tggctaaaat tttatctaca aatgcaagtg
     1981 tttgtgattt gggctgctca agtgctaatt ttttgatttt tttggcaaat ctaagaaagg
     2041 attttaaact ttttggcgtg gataattccg cttctatgct cgaagttgca aagtcaaaag
     2101 ctaaagctta tgggcttgat ataagttttt ttgaagctaa tttatgcgaa tttgattttt
     2161 ttgtttgtga tgtttttgtg gcaaattata ccatgcagtt tattcgccct cctaaaagac
     2221 aagaattgct tgataaaatt tataaaaatt taaactctaa aggcattttg attatgagtg
     2281 aaaaaatcct ttatgaagat gcttttttgt ctaaaaatat catagaactt tatgccgatt
     2341 ataaagaaaa acaaggctat tctaaatttg aaattgcagc taaaagagaa gctttagaaa
     2401 atgttttaat tccttatagt caaaaagaaa atttaaacat gctagaaaag gcaggtttta
     2461 agaaaataga aagtattttt aaatgggcaa attttgaaac ttttatagct tttaaggatt
     2521 agaaatattt tcatcttccc attcatcttt tggaaaacct accttatacg cattaacaca
     2581 atcttgactg atgatagctt tgtgtctgca ttctaaactt ctttttttcg cttcttcagg
     2641 gtgattttga taatattcta cacttttggt ttgttcgcat gctgcaaaaa atataccaat
     2701 aaggcttaaa aaaagagtta ttttcatggt aatttttcct gtgttatatt aacatcatcg
     2761 ctaaagatag aactttgatt gttttctgtt gttttggaag gataaatttc agaaggtgtt
     2821 tctgttatag gtggtattat aatactttca ttattttctg aactttggtt aatatctttt
     2881 gtggtttttt ctttttttaa atcattttgt tttaaagttt ctaatatctg attatcagat
     2941 ttttttggtg tatttggact gtatttactc tcttcatttg ttggtttaac accaactttt
     3001 aatgcattaa tacaatcttc gctaagagtt ccgctttctt tgcattcttt cgctttttct
     3061 tttgcttcgc taggatgatt tttgtagtaa ttttctgttt tgctatcgca agctgttata
     3121 ttaataacta ttaaaatcgt aagtaaaata cttagtcttc gcatttatca atctcctaaa
     3181 atttttaata tcttagcaaa cttgtataaa gcaacgataa attatttttc ttcattgtaa
     3241 gaaaaaatag gcaaagacca ttgatgtttg atagctaaaa gccttgcaaa aactcctata
     3301 aaaagagtta aaagtgtgca aactaaggca ttaagctcaa gccaaattat tagagaataa
     3361 tagattgctc ctgcaattat ggcaattcct gcataaattt ctttttgaaa caccaagggg
     3421 attctcatac ataaaatatc tcttaaaatt ccaccaaaaa caccggtaat tacagcagca
     3481 gcaacggcta tgataaagcc atggttttga tctatggcta tttgagctcc aagtatgcta
     3541 aaaacaacaa gtcctatagc atcaagagtt agaaataaag tttcaagctt ggttactacg
     3601 cgcggaattt ttgtggctac aagggcgcaa aaacagatta aaataatata ttcaggatgt
     3661 ttaacccaag ttaaaggata atgtcctaaa agcacatctc gtatgcttcc gcctccaatt
     3721 gctgttacga gagcaataaa aataactcca aaaagatcca ttttatggcg tcctgcagct
     3781 aaagctcctg tcattccttc tgcggaaata cctataatgt aaagagtggt tattgtaaga
     3841 gcatttatct ccataattta taccttaaaa tttatcacaa tttatttgat actgtttaat
     3901 attttcatta tttacttcat ggtttggtac ttgatagcat tctttaaatt tcggagtttt
     3961 aataattttt acataaaaac ttggtatagc aatacggttt ttaatgtatt gtggttcttt
     4021 atcgtaaagt accaaattta aaacctcgat actttgaaat ttgaaagcca aatttctttc
     4081 tctttgctcg atttcattcc aaattttatt atttatttgt gcaatttgtg gggtaatatt
     4141 gctcattaaa aatactgaat tttgagcagc tttactaaag ctaaaagaag cattaggcgc
     4201 agtgtgtcct cgtgtgtaac tactgttttt ataatcactc caagtagtgc ggtatttttt
     4261 aggaatattt gtatcatctt caaagcgagg gcgttttttg atttgtttat cttttaaatt
     4321 tgaagcttct actttataag caacggcttt tgtgcctttg agtttataat catagcaatt
     4381 tagataaaaa aacttatcta agatttgcga gcaatttata ttgttaaaat aagaagaaaa
     4441 atcagcacta ggtttgtaag gttctaaggc aaaaatatta agagatatag cgagtaaaaa
     4501 gatgaaaatt ttcatttaag ttccttatct ttacttttgc aaagatgatt taaaaaacat
     4561 tctttacata aaggtttttt agctttacag gtgtagcgtc caaaaagaac catggcttga
     4621 tgaagatagt taagattgtc tttaaatatg cctgttaaat cttcttctgt agcttctgga
     4681 gtttttgcct tgctaagtcc taagcggtga gaaactctaa aaacatgagt atctacagcc
     4741 atgaaatttg ctccgcacca ttctattaaa actacatgag cggttttttg tcctacgcct
     4801 gctaaggatt ttaaattttg ttcatcaagg ggaatttctc cgccaaaatt ttcacaaact
     4861 gcttttgcca tttttataag attttgtgct ttattattaa aaaatgaaca agtttgtata
     4921 taggttttaa gacttgataa atttgcattt gcaagggatt tgatatcagg ataagcttta
     4981 aaaagatcag gagtgatgag attgactctt ttatcagtgc attgggctga aagcattacg
     5041 cagactaaaa gctcatataa atttgaaaat ttaagctctg ttacaggctt gtcaaaatgt
     5101 tttaaaaaaa gttctttgat ttctaaattt cttttcattt tttaatttta gttaattagc
     5161 tttaaaccaa gtttagatat aattgatttt atatacattt tattaaaaag gaaacctaat
     5221 gaaaaaattt tctttagtcg cagcagcttt gattgcaggt gtagctttaa atgtaaatgc
     5281 agctacagta gccactgtta atggcaagag cattagtgat gcagaagtaa gtgaattttt
     5341 tgcccctatg cttagaggac aggattttaa aactttgcca gataatcaaa aaaaagctct
     5401 tattcagcaa tatattatgc aagatttaat tttgcaagat gctaaaaaac aaaatttaga
     5461 aaaagatcct ttatacacaa aagaacttga tcgtgcaaaa gatgcaatac ttgttaatgt
     5521 ttatcaagag aaaattttaa atactattaa aattgatgcg gctaaagtta aagcttttta
     5581 tgatcaaaat aaagacaaat atgtaaaacc tgcaagagtg caagcaaaac atatcttagt
     5641 agcgacagaa aaagaagcta aggatattat taacgaactt aaaggtttaa aaggtaaaga
     5701 actagatgct aaatttagcg agcttgctaa agagaaatca attgatccag gttcaaaaaa
     5761 ccaaggtggt gagcttggtt ggtttgatca atcaactatg gtaaagcctt ttacagatgc
     5821 tgctttcgca cttaaaaatg gtactattac tacaactcca gtaaaaacga attttggtta
     5881 tcatgtaatc ttaaaagaaa attcgcaggc taaaggtcaa atcaaatttg atgaagtaaa
     5941 acaaggtatt gaaaacggac ttaaatttga agaatttaaa aaagttatca atcaaaaagg
     6001 ccaagatctt ttaaatagtg ctaaagtgga atataaataa tgggtgtttt agacattgta
     6061 aaagcagggg tgattagcgg agatgagctt aataaagttt atgactatgc taaagcagag
     6121 ggttttgcta tccctgctgt taatgttgta ggaactgatt ctattaatgc ggttttagag
     6181 gctgcaaaaa aagttaattc tccagttatt attcagtttt caaatggtgg ggcaaaattt
     6241 tatgcaggga aaaattgtcc taatggagaa gttttaggtg caattagtgg ggctaaacat
     6301 gtgcatttac ttgctaaagc ttatggtgta cctgtgattt tacacactga tcatgctgca
     6361 agaaaacttt tgccttggat tgatgggctt attgaggcaa atgcacaata taaaaaaacc
     6421 catggacaag ctttatttag ttctcatatg cttgatctta gcgaagaaag tttagaagaa
     6481 aatcttagca cttgtgaagt ttatcttcaa aaacttgatg ctttaggtgt tgcgcttgaa
     6541 atagaactag gttgtacagg tggcgaagaa gatggagtgg ataatacagg tattgataat
     6601 tccaagcttt atacccaacc agaagatgta gctcttgcat atgaaagact tggaaaaatt
     6661 agtgataaat tttcaatcgc agcaagcttt ggaaatgtac atggagttta caagccagga
     6721 aatgttagct tacaacctga aattttaaaa aattcgcaaa aatttgtaaa agataaattt
     6781 gctttaaata gcgataagcc tataaatttt gtatttcatg gcggtagcgg tagtgagcta
     6841 aaagatatta aaaatgcagt aagctatggc gtaattaaga tgaatattga cacagatact
     6901 caatgggctt tttgggatgg ggtgcgtgaa tatgaactta aaaatagggc ttatttgcaa
     6961 ggacaaattg gaaatccaga aggtgatgac aagccaaata aaaaatacta tgatccgcgt
     7021 gtttggttaa gaagcggtga agaaagcatg ataaaacgtc ttgaaatcgc ttttgaagat
     7081 ttaaactgta taaacaaaaa ctaagcattt taaaggctta gttttatttt gttttaaaaa
     7141 tttttatcaa attaagtagc aatctttaaa ataaaatttt taatgaggta ttggtttcat
     7201 ggatattaaa tcagatgaaa tttcagaact tgttttgcct gaaggcaaag atgcaagagg
     7261 ttctttggtt tattttaaaa ttatttttat tccagctttt ctttatattt tgattttatt
     7321 gggttatttt aatgtaattg actttaaggt cgaattacat acggttatta tgacaggtgt
     7381 gatttttttt acagcattga tttttgctag acatagtgct gagtatgcgt atagtatttt
     7441 tgaacaacaa aaagatgaat ttaaacaggc tttaaaaaga catattatga ggcattttct
     7501 tgccataggg aaagacacga aatcaaatgc caattttgat gactttgctt atacatatat
     7561 taagggtgca agaaatgaga attttgctag tataggttcg gcaatttttc caatgatggg
     7621 aattttagga acttttatca gtatagcttt ttcaatgcca aattttagtt ctagtgatac
     7681 agccgcttta gaacaagaaa ttgcagattt gttaagtgga gtgggaactg ctttttatgt
     7741 ttcaatttat ggaatttttc ttgcattatg gtggatgttt tttgaaaaat atggtaaaag
     7801 caaaatagat cgtttgctaa atcgtcaaaa aaacgctaca agtggatttt tttggacaaa
     7861 agaagagctt gatcaaagat atttaactga gagtttgcaa cattttgaaa aaattggagc
     7921 aatttttaaa caagttagta atgatgattt ttttgcagag cttgatcatg ctattgatag
     7981 aaaatttggt attttccaag atatgctaaa tatagaagaa aaggctatta gattaagtgg
     8041 tgaacacatc aaacaaacca tgggtgagct tagtaaagca caaagagatc aacgcgatct
     8101 tggaaagctt tatagtgaaa tgttaaatgg tataggtttg ctcaatcaaa atttaaaaga
     8161 aatcaataca agaatgtcag aacaatataa tcgcttgctc gatatcagta gtgataaaat
     8221 tcatcatctt gataagacgc taagtgcatt cgatgaaaaa gtagagcgtt ttggtaaaaa
     8281 ttttgaactt tatgaaaaag caatgttgga aagtcaagaa aaggtttttg agggatttaa
     8341 agcaagcttg tttgaaggta tgcataaatt taaagaagta tatgaagaag aaaaaagtat
     8401 tgatgctaaa atcaaaatga tggatgagct taaaaaagaa atgaaagcac ttgatgaaga
     8461 aacaagtcaa atgatgagca agctttctgg ggatgaaaat cagaataaag gaaatgaaac
     8521 caaacaaata gaagattttt cagagtctaa gactgaagaa aatcaagatg aaattcaagc
     8581 agaaatatct aagcaagaaa gcaatgatga gctaaaaaac gaagataaag aaaataaatg
     8641 aaaaatgagt caaaagaaga tagcaatttt tggatagctt atgctgattt aatggcagga
     8701 ttgctgtttg tttttatttt gctaataggt gctattgttg taaaatatgt tttaactcaa
     8761 agtgatttaa aagaaatcaa agacaatctc aataaacaag aggcacgctt agaggagagc
     8821 aaagaagagc ttagaaataa agaagccata gtgtttaaac taagttctga tttaaacaat
     8881 gcttctagtg ctttaaatct tgctaattct caaaaagcag aattagaggc taatattaca
     8941 aattacaagc agttaagcaa agatttaaac tcaactttag ataataaaga taagcaaatt
     9001 ttgattttac taggtcaact agagaaaaaa gatgaagagc ttaaaaattt acaagaagat
     9061 tttcaaaaag ctaaagaaaa ggtgcaaaat cttggtttta ttcgtgaaaa tttaagcaag
     9121 gaattgcaaa gcaaacttga taataatatc actatagatg aaaagacagg atctatttct
     9181 ttgcctgctg aagtactttt tgataaagat tcttatgtgt taaaaaatga ggcaaaggca
     9241 agtttgagaa aaatcttaag cgaatatttt gatgctattc ttgaagatcc aaaaattttt
     9301 tccaacattg aaaatatcat tattgaagga catactgata gtgatggatc ttatatttat
     9361 aatttagatt tgtcgcaaaa aagagcttat gaggtgatga attttatcta tactttttat
     9421 aagagtgata agcttcaaaa gcttttaatg gcaagtggac gttctttttc agatcctgtg
     9481 tttgtcaacg gagttgaaga taaggacaag agtcgtcgca tagaaataaa atttagcatt
     9541 aaaaatgata atgctttaaa ggatgtagaa aaattctttg aatttcatta aaacaattag
     9601 tcctatacaa aaaatcaatt ttaacggatt tgaattttat attaaaagag atgatttatt
     9661 aggggaaatt aatggaaata aagctaggaa acttgctttt tatatccatc aaagatatcc
     9721 taaaaatcaa tcttttgtaa gttatggagg aagccaaagt aatgctttgg cggcattaag
     9781 tatttttgct aaacaaagat catataagct tgtttttgct tgtgaaaaaa tttctacttt
     9841 tcttaagaat aatccttgtg gaaactatgc tttagcttta gaaaatggtg ttgattttgt
     9901 agaaaatatc cattctttat ccttaaagca atttgctttg tctttgtgta aaaaagatga
     9961 tatttttata gaacaaggca tagctaattt agaagctcaa tatggctata tggaacttgc
    10021 tcaagaaatt caaatgcaaa gtcaaagttt aaagcttgat tttgatattt ttttaccttc
    10081 gggtacaggc acttcggcag cttttttggc aaagtattct aaatttaaag tatttacttg
    10141 cgcttgtgta ggtgatatta aatatcttaa aaaacaaatt ttaacattag atccaagcta
    10201 tgatttttca aatttagaat ttttaacaag tgataaaaaa tatcactttg ctaagccgta
    10261 taaagaattt tatgagcttt atatggattt aaagttaaag tgcaatatag aatttgactt
    10321 gttgtatgat attttaggat taagtatagc attaaaacaa gagtggaaaa aaccattgct
    10381 ttatatacat caaggtggaa ttttaggaaa ttccactatg ttagagagat ataaatttaa
    10441 aaaattagtt taaaattcca tagataaaaa tgattaaaat aatcaaaggt actatatatt
    10501 ttacataata aaaccaaatt ccaaaccatg aacttttaag tgtattgtta ttgctaagtt
    10561 cttttagact ttcttgtttg cctaaaatcc aacctacata aatacagcaa aaaaatgcag
    10621 ttaaaacaaa caaaatattt ccactaatga aatcaaaact atcaaaaatg ttttttcctt
    10681 tgatgataac aatatcacgc caaggcccat aagttagaat acaaggaaga ttgccaagta
    10741 tgaagataaa ccctagagtt aggttaatag aaagattttt agaatattta aatttttctt
    10801 ctaatacgct aataataact tgataaattg gcaagcttgt ggttaaagct gcaatcaaga
    10861 gtaagacaaa aaataaaata cacacaatgg tgccaaaatg gatatgagaa aatgctatag
    10921 gtaaagtttc aaaaaccaaa gaaggcccgc tatctggagc aagtcccgct gagaaaagtg
    10981 ctggaaaaat cataaaacca gccaaaacag ctatgatggt atttaaaacc cctgtataaa
    11041 tagcggtttt tgtcatattt tcatttttat taagatgaga tgaaagtgtt atcattactc
    11101 caaaacctag ggataaagca aaaaagactt gtcctaaaac atcgattaaa agttttggtg
    11161 ataaaatttt actaaaatca ggttcaagat aaaatttaac tccagccata gctccatcaa
    11221 gggttaaatt gcgtcctaca acaataataa gacagataaa taacaaaggc attaaaaatt
    11281 ttacggattt ttctatacca tctataatgc ctctttttaa aataatataa ttaataatta
    11341 caaaaacagt ggtaaaaata ccaactccta aaggattgaa ggctattttg tcgttaaaaa
    11401 actgatgagt aaattctttg cttactacat tggcaagact aaaattccct agggttaatt
    11461 cccaaatata aactaaaacc catcctccaa gtaccatgta gtaagccatt atgccaaagc
    11521 ttcctaaaag tcccatatat ccaatacttt gccatttttg tttgaaagca tctacgctat
    11581 ttgtcatcgc ttttctgcct atgacatttt caactaaaat aacaggaatg cctatgataa
    11641 tcatagctat acaaaaaact aatacataag caccgccacc attttctcct acaagatagg
    11701 gaaaacgcca agttgctcca aatcctatgg ttgctccagc aactgttaga atataagtta
    11761 gtgtactact ccatgtttgt ctttgcatga ttatcctttc gaaaaagaat tattttacct
    11821 aaaaataact ttaaaaactt ataagctatc catatagctt atatcgtaag tattttttaa
    11881 gcgtttgtgt atcgtttcgt gccaattttg agatatgaga gagtttaatt tttctaattt
    11941 atctaataaa atcggatttt gtctaagagc ttgatgtggg gagtaaaaaa gttgattgag
    12001 ttcaaataca ctaagtgaag tagaattttt ttctaaaatt ttaatatttt catactttcg
    12061 tatttgtcca acttgtaaaa ctttataata ccatccactc aagcccgttt taaaaatttc
    12121 atgtgtaaaa tttgaattat tgtgaatttt agaaattttt acacaaggtt ttctaggttc
    12181 gcttacttgc agtattgcat ttgaaatttg atgtatatca cctatgcaaa cattttgttc
    12241 acaaagccca tcgatgctca aattttcacc cattgagcca aaatttagct ttttattaag
    12301 aaatctttcc catataggat agttttgaca agagttggca aaaatagcct tatggtagcc
    12361 tccatgatga attttatcag ctatttgatc atctaaaata cctagaaaat caatttgtgt
    12421 ttcttctagg taagtatctt taataaatgc gctttggaaa tttttatagt ttttaatttt
    12481 ccctatttgc aaactttgaa ttttcatggt tctagttttt ttaataaatc atcagcactg
    12541 ataaaacccg tgatttttaa tttttctttt ccattttcaa agaaaattaa aacaggtggg
    12601 ccaaaaacat taaattcttt catggtttta atttgttcat tattattttc gcttacatca
    12661 actttgataa gtttgtaatt ttgcattttt tgtatgattc tttcatcgct aaaggttaat
    12721 tcatctaaaa gtttgcaatt ttcacaccaa gatgcagtaa aatcaagcat tatgggcttt
    12781 gtatttgttt gtatttcttg ctttaattgt tcaaaattgt tgatataatc atagcttaaa
    12841 gcagattttg aggcagatat agtattgaaa tttaaaggat ttaagaaatt tttagcccca
    12901 aaaagtcccc ctag
//
LOCUS       DAZBIH010000039        12725 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.039, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000039 DAZBIH010000000
VERSION     DAZBIH010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12725)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12725)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12725
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.039"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            130..915
                     /locus_tag="ACHFOB_000937"
     CDS             130..915
                     /locus_tag="ACHFOB_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HFN5799748.1"
                     /translation="MEITDLPYLIIGIISGIASGLFGIGGGMIIVPSMFALGASAHHA
                     IGISVLQMIFAAVFGSYINYKKKNLNLKDGIMIGFGGLIGASFSGMLLKALSDVALTS
                     VFLAVSCIFFIKYAFGIKENIVQNQRSVWVKNVILFIAGAFTGIFAISLGIGGGLLIA
                     PILAYFLGYDSKKVVSLSLFFVIFASVSGIISFSNSGVIDSEVIHKGILVGIASMVGV
                     FIGIKIIEKMHISAHRKILLCVYALSILGTTHSLLNKLNFINF"
     gene            988..3813
                     /gene="uvrA"
                     /locus_tag="ACHFOB_000938"
     CDS             988..3813
                     /gene="uvrA"
                     /locus_tag="ACHFOB_000938"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HFN5799749.1"
                     /translation="MNDTIKIIGARENNLKNIHLEIPKNKLIVFTGLSGSGKSTLAFG
                     TLYAEGQRRYIESLSAYARQFLDKVGKPDVDKIEGLTPAIAIDQKTTSKNPRSTVGTI
                     TEIYDYLRLLYARVGIQHCHQCGQKISSMSASDIVSEILKFPKGAKIIIYAPLIREKK
                     GTYADLLENLRNKGYVRAQIDGVLVRLDEEIELAKTKKHTIKLVIDRLEIQEDLLSRL
                     ASDIEKGLQESFGEIEIEVLNHEEINLNKHYHFSEHSACFDCKISFVPLEPLSFSFNS
                     PKGACEACDGLGIRYTLDMKKIIDENLSLENGAVKIMYGFNKSYYYKFLIAFCEQNEI
                     PIKIPFMQLSEEQKRLVLYGNAKTIEFLWKRNRLKRTFEGVVKMAYEMLKDEKDLAEY
                     MSEKICKDCGGHRLKPESLAVKVAKKGLGEILDMSIEDSTAFFADEKNFSYLSEQQKL
                     ISKPILKEINERLFFLYDVGLGYLSLGRDARTISGGEAQRIRIASQIGSGLSGVMYVL
                     DEPSIGLHERDTAKLIKTLRNLQQKGNTLIVVEHDKMTIEEADFIVDIGPKAGKFGGE
                     VVFSGTYKELLKSKSETALYMNGKKQISQLQNRTQKEWLELKNVNINNIQDLSVKFPL
                     QNLVAITGVSGSGKSSLILQTLLPFAQEELNRAKKVKKLGGVQIEGLEKLDKVIYLDQ
                     SPIGRTPRSNPATYTGAMDEIRNLFAATKEAKMRGYKAGRFSFNVKGGRCEKCSGDGE
                     IKIEMHFLPDVMVVCDTCEGKRYNDATLEIKYKGKNISEILNMSVLEASEFFTAVPKI
                     KQKLDTLVKVGLDYLTLGQNATTLSGGEAQRIKLAKELSRSDTGKTLYILDEPTTGLH
                     FEDVNKLILVLQHLVDLKNSVFVIEHNLDVIKNADYIIDMGPEGGIKGGKVISTGSVE
                     KVAKEHKKTRSYTGYYLDLELKNTQKS"
     gene            3818..4261
                     /locus_tag="ACHFOB_000939"
     CDS             3818..4261
                     /locus_tag="ACHFOB_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YqaA family protein"
                     /protein_id="HFN5799750.1"
                     /translation="MFDFLYNDISYLGLFMVCFLSSTLLPLASEAFVLGFIKLDFNPN
                     LVLIVATLGNTLGSLSTYALAYFGKEKILEKYFSKSLKKLENFNANFAKFGSIFAFFT
                     FLPLVGDLFALGLGFAKYSFLKTIFFILLGKLSRYAFIIFIANSF"
     gene            complement(4217..5224)
                     /locus_tag="ACHFOB_000940"
     CDS             complement(4217..5224)
                     /locus_tag="ACHFOB_000940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside hydrolase"
                     /protein_id="HFN5799751.1"
                     /translation="MRLILDTDIGNAIAGANTDDGLALALILSSKEIKLEMLSTVCGN
                     VPSLVAYSVAKDLFKRLNLNIPVYLGANEALKEPSKAWRQRLDESVKNFKLEYLWENI
                     KSPEILENINPDAIFKMGELVSKNPKEISICAIGPLTNIAMTMKIFKDFDINLKELFI
                     MGGSFDMPYYTKDTNFGFDPEAASIVLNSRAKITLIPYNATMQTLLTHEDLKELQGKN
                     ILCDFIVETLGVWIDYASKTRGTKGTWMHDALTIAYALDSSIADFDECYADVICDSSL
                     ARGMSWRCFKEPKMSMGVDLSTKNCVKILKNVDNAKLLKLIKERFLKGVCYENYESIT
                     T"
     gene            complement(5221..6582)
                     /locus_tag="ACHFOB_000941"
     CDS             complement(5221..6582)
                     /locus_tag="ACHFOB_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5799752.1"
                     /translation="MTNQQIDGIADKNFNTPEGRKVFKKAVFSCWLGTAMEYADFALY
                     GLAAATIFSEVFFPEQTPVIALLLSFVTYGIGFIARPIGALFFGHLGDKHGRKNVMMA
                     TIALMGISTTLIGFIPSYAVIGVWAPICLVALRFMQGFGAGAELSGGTVMLGEYAPSK
                     RRGLVSSVIALGSNSGTLLASFVWLLMVQMDEASFKEWGWRVPFMGSILIALFAVYIR
                     FHVKETPVFEKQKNEMMKLRLNNEKHMKKDERSFWQRSRAFWTMVGLRIGENGPSYLA
                     QGFIVGYVTKILLLDKSVATTAVMIASLVGFLVIPLAGYLSDKFGRCITYRMFCLLLM
                     IYAFPAFMLLDSKNEIIVILTIIVGMSLASLGIFGVQAAWGVELFGVKNRYTKMAFAK
                     ELGSILSGGTAPMVASALLAYYGTWWPIATYFVLTAGIGFVTTFFAPETRGRDLNKIE
                     DAI"
     gene            6744..9383
                     /gene="polA"
                     /locus_tag="ACHFOB_000942"
     CDS             6744..9383
                     /gene="polA"
                     /locus_tag="ACHFOB_000942"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0008408 - 3'-5' exonuclease activity
                     [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HFN5799753.1"
                     /translation="MKTLTIIDTFGFFFRLYYALKGFKNSQGQASGMISGFANFIYSL
                     KNEYKSDYIVFALDSKGKTFRSEIDPNYKQNRTPPPPELLEQIPICIKMIEKMGFISV
                     SQEGYEADDIIASFVKTCENRDIFVRIITQDKDLYQLIKDGKTSIYSPISKNDYDEAA
                     CLEKYGVKPNQIRDFLALCGDSSDNIPGVKGIGAKGAKTLLDEFGSIEGIYENLTLVR
                     NERSRNLLLEGKENVFLSKKLASLYDNLEVQNLIEKATYPDEEPLLKILEILEHYELN
                     TLLKKLRQNPDNKDKNLGFKATLVQDENKLFEILNTLDKESIIAFDTETTGLDTKEAK
                     IVGFSFCMNENEAFYVPLTHNYLGVGEQISLQSAKKAIEAIFNHFVIGHNLKYDFKII
                     QNNFDLNLPQKYADTMILAWLKNPSLRVNMDDLALRLFNYETLHFESLVKKGENFASV
                     ELEKACKYAAEDAYITLRFYLYFLKNLETPLLELAKNCEFDFIKIIMMMEENGIKLDT
                     NALEILMKKFENEIKNLSEEIYTLCEDRFNLNSPKQMGDILFEKLKLPSGKKGKTGYS
                     TDEKVLNILLDKHPVIAKILDYRELAKLYSTYCEPLLKLALKDKNSRIYSSFLQTGTA
                     TGRLSSKDPNLQNIPAHGQYAKDYKSCFVAKDGFSFISLDYSQIELRILAHFSEDEKL
                     LNAFANDEDIHARTAIMIFGESNYETRSVAKSINFGLIYGMGYKTLSQNLKIEANLAK
                     SYIEKYFENFTSIKKYFEKVKNEAKQNGFIVTLSGRKRYFDFENAKPMQIAMYERESI
                     NSILQGSAADVIKLAMLEINKELNEDKKLILQIHDELIFEVKDDLCENFVKKTRDIME
                     NIVKLKVKLKTSSSIAKNWGDLK"
     gene            9399..10175
                     /gene="motA"
                     /locus_tag="ACHFOB_000943"
     CDS             9399..10175
                     /gene="motA"
                     /locus_tag="ACHFOB_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HFN5799754.1"
                     /translation="MDLSTILGMVLAVTSISVGDILEGGNPLHVIHLSSFLIVMPTAA
                     FCAMTSTHKKIVKAAYKELKVVFKGSGVNLPERIAQLIEFAIIARRDGLLALESRTNE
                     IENEFLKNAMMMLVDGKSFEEIHESMEIQTEQLEEHYKECAEYWIVFGETCPTMGLVG
                     AVFGLILALKLLDNPQAMAAGISGAFTATVTGIFGAYALFAPWGKKLKANGMDLVKEQ
                     IVITEAIKGIAEGANPRDLEAKLFNFLSHDDPRISQFDKG"
     gene            10178..10921
                     /gene="motB"
                     /locus_tag="ACHFOB_000944"
     CDS             10178..10921
                     /gene="motB"
                     /locus_tag="ACHFOB_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HFN5799755.1"
                     /translation="MAKKHKCPECPAGEKWAVPYADFLSLLLALFIALWAISKTNPAK
                     VEALKTEFVKIFDYTSTQTVKEESKTQEKYKGAAKEESDELKSLKQMTMTQQETIKRL
                     QAALDQSDNQVALNLPSKVEFERGSAQIVSADIQDYLKRMAELTTYLPPQAKIEIRGY
                     TDNSDSIIRSYELAYQRAENVLKYFIEGGANLKNISIKSYGLNNPINGNPQALENNRV
                     EIYFKVDTADTSTQKSVLELINKIGTKAP"
     gene            complement(10927..12015)
                     /gene="flhB"
                     /locus_tag="ACHFOB_000945"
     CDS             complement(10927..12015)
                     /gene="flhB"
                     /locus_tag="ACHFOB_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhB"
                     /protein_id="HFN5799756.1"
                     /translation="MAGEDQEKTEEPTSKKIEDARKEGNVPKSQDAAAIVTLIIGVTI
                     TLFMMSFMGERIVNLYRYYQSFIGVEFDLRIIQAIMIKSIFEVLIILAPIVLSIMIAG
                     VLGNIMQFGFIFTTKPIMPNLGKINPLKGLKNLFSLKKIVESIKIILKVGIVFTIAFI
                     VLLKFMQELPRVELYTMVTQLAWLRDRAIVLAAIVIVAFLIIAVLDVFLVRFQYFKGL
                     RMSKQEIKDEYKQMEGDPQVKGRIRRLQMEAARRRMVQDVAGADVVITNPTHYAVAIR
                     YDTSKEQAPRVVAKGVDFLALRIKQVAYENNVVVYENPPLARELYKACDVNDLIPREM
                     FKAVAEVLGFVYNTNNKSRLAGQVKKGN"
     gene            complement(12134..>12725)
                     /locus_tag="ACHFOB_000946"
     CDS             complement(12134..>12725)
                     /locus_tag="ACHFOB_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HFN5799757.1"
                     /translation="VTKKALDFTAPAVLGNNEIVQDFNLYKNIGPKGAVVFFYPKDFT
                     FVCPSEIIAFDKRYQEFKNRGIEVIGISGDNEFSHFAWKNTPVNQGGIGQVKFPLVAD
                     LTKQIARNFDVLYAEAVALRGSFLLDADGTVRHAVVNDLPLGRNIDEMLRMVDTMLFT
                     NEHGEVCPAGWNKGDEGMKANPKGVAEYLGKNEAKL"
BASE COUNT         4610 a         2098 c         1999 g         4018 t
ORIGIN      
        1 gaaacatttt tacgatgctt aaagttacca aaaaatattc tattgttata aaaaaactaa
       61 gataatactt agcttaataa gataaaatta ttccgtattt gaaatattta atatttttta
      121 ggaaaagcta tggaaatcac agatttacct tatctaatca taggaatcat ttcaggtatt
      181 gcttctggac tttttggcat tggtggaggt atgattatcg ttccttctat gttcgcactt
      241 ggagcaagtg ctcaccatgc tatcggaatt tcagtattgc aaatgatttt tgcagcagtt
      301 tttggctctt atattaatta taagaaaaaa aatctaaatc ttaaagatgg tattatgata
      361 ggttttggag ggctcatagg ggcaagcttt agcggaatgc ttttaaaagc tttaagtgat
      421 gtagctctta ctagcgtatt tttggcggta agttgtatat tttttatcaa atatgctttt
      481 ggaattaaag aaaacattgt gcaaaatcaa agaagcgttt gggtaaagaa tgtcatttta
      541 tttattgctg gagcttttac tggtattttt gctatttctt tgggaattgg tggcggactt
      601 ttaattgctc cgattttagc ttatttttta ggctatgata gtaaaaaagt tgtttcctta
      661 tccttgtttt ttgttatttt tgcttcagtc tctggtatta tatctttttc aaattctgga
      721 gttatagact ctgaagttat tcataaagga atactagtag gtatagcttc tatggttgga
      781 gtttttatag gaattaaaat catagaaaaa atgcatattt cagctcatag aaaaatttta
      841 ctttgcgtat atgccttatc aatacttgga accacccact ctttgcttaa taagctaaat
      901 tttataaatt tttaacttgg atttatccaa gttcttttaa tattattatg ctaaaatctt
      961 aaatttattt aatgtttagg aaagactatg aacgatacca taaaaatcat tggcgcaaga
     1021 gaaaataacc taaaaaatat ccaccttgaa attcccaaaa acaaactcat tgtttttaca
     1081 ggactgagcg gaagtggaaa atcaaccctt gcttttggaa ctctttatgc tgaaggacaa
     1141 cgccgttata tagaaagttt aagtgcttac gccagacaat ttttagataa ggtaggcaaa
     1201 cctgatgtcg ataaaatcga aggtttaact ccagccattg ccatagatca aaaaactact
     1261 tctaaaaatc cacgctctac tgtaggaacc atcactgaaa tttatgatta tctaagactt
     1321 ttatacgcaa gagttggcat tcaacattgt catcaatgcg gacaaaaaat ctcatctatg
     1381 agtgcaagtg atatagtcag tgaaatttta aaatttccaa aaggtgcaaa aatcatcatc
     1441 tacgccccac tcatacgaga aaaaaaagga acttatgcag atttgcttga aaatttacgc
     1501 aacaaaggct atgtaagagc tcaaattgat ggagttttgg taagacttga tgaagaaatt
     1561 gaactagcca aaaccaaaaa acacaccatt aaacttgtca tagatagact tgaaattcaa
     1621 gaagatttac tttctcgcct tgcaagcgat atagaaaaag gtttacagga aagctttgga
     1681 gaaatagaaa tagaagtttt aaatcatgag gaaataaacc ttaataaaca ctatcatttt
     1741 agcgagcatt cagcttgttt tgattgtaaa atttcctttg ttccacttga acctttaagc
     1801 ttttctttta attctccaaa aggagcatgt gaagcttgcg atggacttgg aattcgttat
     1861 actttagata tgaaaaaaat catcgatgaa aatttaagtc tcgaaaacgg tgctgttaaa
     1921 atcatgtatg gttttaacaa aagttattat tataaattcc taatcgcctt ttgcgaacaa
     1981 aatgaaattc ctatcaaaat accttttatg caattaagcg aagaacaaaa acgccttgta
     2041 ttgtatggta atgccaaaac tatagaattt ctttggaaaa gaaatcgtct aaaacgcact
     2101 tttgaaggcg tggttaaaat ggcttatgaa atgctaaaag atgaaaaaga tttagccgaa
     2161 tatatgagtg aaaaaatttg taaagactgc ggtgggcatc gtttaaaacc cgaaagttta
     2221 gccgtgaaag tagccaaaaa aggcttgggt gaaattttag atatgagcat agaagatagt
     2281 acggcctttt ttgcagatga gaaaaatttt tcttatttaa gcgagcaaca aaaacttatt
     2341 tctaaaccta tcctaaaaga aatcaacgaa agattgtttt tcttgtatga tgtggggcta
     2401 ggttatcttt ccttagggcg cgatgcaaga acgattagtg ggggtgaagc acaaagaatc
     2461 cgcatagctt cacaaattgg cagtggttta agcggagtga tgtatgtctt agatgagcct
     2521 agcataggac ttcatgaaag agatactgca aaactgatta aaactttaag aaatttacaa
     2581 caaaagggca ataccctaat tgtcgtagag catgataaaa tgaccataga agaagcagat
     2641 tttattgtag atattggtcc aaaagcagga aaatttgggg gtgaggttgt atttagtgga
     2701 acttataaag aacttttaaa aagcaaaagc gaaactgcac tttatatgaa tggtaaaaaa
     2761 caaatttcac aacttcaaaa cagaacacag aaagaatggc ttgagcttaa aaatgtaaat
     2821 attaacaata tccaagattt aagcgtaaaa tttcctttgc aaaatttagt cgctataaca
     2881 ggagtttcag gttctggaaa aagctctttg atacttcaaa ccctacttcc ttttgcacaa
     2941 gaggaattaa accgtgcgaa aaaagttaaa aaacttggcg gagtacaaat agaaggactt
     3001 gaaaaacttg ataaagtcat ttatcttgat caaagcccaa ttgggcgcac accacgttca
     3061 aatcctgcca cctatacagg tgctatggat gaaatcagaa atctttttgc cgccactaaa
     3121 gaagccaaaa tgcgtggtta taaagctgga cgcttttctt ttaatgtcaa gggtggaaga
     3181 tgtgagaaat gtagcggaga tggagaaatc aaaatagaaa tgcatttttt acctgatgtt
     3241 atggtagttt gtgatacttg cgagggcaaa cgctacaatg atgccacgct agaaatcaaa
     3301 tataaaggca aaaatatcag tgaaatttta aatatgagtg ttttagaagc gagtgaattt
     3361 tttacagccg ttcctaaaat caaacaaaaa ttagatactc tagtaaaagt gggtttagat
     3421 tatctaactc taggacaaaa tgccaccacc ttaagtggag gtgaagcaca aagaatcaaa
     3481 cttgctaaag aactaagccg tagcgataca ggaaaaacgc tttatatact tgatgaacct
     3541 acaacaggac tgcattttga agatgtcaat aaactcatct tagttttaca acatttagtt
     3601 gatcttaaaa attctgtttt tgtgatagaa cataatttag atgtgattaa aaatgctgat
     3661 tatatcatcg atatggggcc tgaaggcgga attaaaggtg gaaaagttat aagcacagga
     3721 agcgtggaaa aagtcgctaa agaacacaaa aaaacccgtt cttacacagg atattatcta
     3781 gacttagagc ttaaaaatac acaaaaatca taattttatg tttgattttt tatataatga
     3841 tattagctat ttggggcttt tcatggtgtg ttttctttca agcacactat tacctttagc
     3901 aagtgaagcc tttgttttag gctttataaa acttgatttt aatccgaatt tggtacttat
     3961 cgtagccact ttgggtaata ccttaggaag tttaagtact tatgctttag cgtattttgg
     4021 aaaagaaaaa attttagaaa aatactttag caaatcctta aaaaaattag aaaatttcaa
     4081 tgctaatttt gctaaatttg gaagtatatt tgcttttttt acttttttac ctttagtagg
     4141 agatcttttt gccttgggac ttggttttgc gaaatattct tttttaaaaa ctatattttt
     4201 tatcttactt ggaaaattaa gtcgttatgc tttcataatt ttcatagcaa actcctttta
     4261 aaaacctctc ttttataagt tttaaaagct ttgcattgtc tacatttttt agaattttaa
     4321 cacaattttt agtgcttaaa tccaccccca tactcatttt tggttcttta aaacaacgcc
     4381 aactcatacc tcttgccaaa gaactatcgc aaataacatc agcataacac tcatcaaaat
     4441 ctgcaatact agaatctaat gcgtaagcta tcgttaaagc atcatgcatc caagttccct
     4501 ttgtaccacg tgttttagag gcataatcaa tccaaacacc taaagtttca acgataaaat
     4561 cacataaaat attcttacct tgcaactctt ttaaatcctc gtgtgttaat aaagtctgca
     4621 tggttgcatt ataaggtatg agtgtaattt tagctcttga atttagcact atactagccg
     4681 cctcaggatc aaaaccaaaa tttgtatctt tagtgtaata aggcatatca aaactgccgc
     4741 ccataataaa aagctcttta agatttatat caaaatcttt aaaaattttc atagtcatag
     4801 cgatatttgt caaaggtcct atcgcacaaa tagaaatttc tttaggattt ttactcacca
     4861 actcacccat tttaaaaatc gcatcaggat ttatattttc taaaatttca ggacttttta
     4921 tattttccca aagatattca agtttaaaat ttttaacact ttcatcaagt ctttgacgcc
     4981 aagctttact tggttctttt agggcttcat tcgctcccaa ataaactggg atatttaaat
     5041 ttaaacgttt aaataaatcc ttagccacac tataggcaac aaggcttgga acattaccgc
     5101 aaactgtgct tagcatttca agtttgattt ctttagatga caaaatcaaa gcaagtgcta
     5161 aaccatcatc agtatttgct cctgcaatag cattgcctat gtccgtgtct aagataagtc
     5221 tcatatcgca tcttctattt tatttaaatc tctacctcta gtttctggcg caaaaaatgt
     5281 agtcacaaaa cctatacctg cagttaatac aaaatatgtc gcgataggcc accaagtgcc
     5341 ataatatgca agcaaagcag aagccaccat aggcgctgtt cctcctgaaa gaatagaacc
     5401 tagctcctta gcaaaagcca tttttgtata acggtttttt accccaaaaa gctccacacc
     5461 ccaagccgct tgcacaccaa aaatccctaa agatgctaaa gacataccta caataatagt
     5521 taaaatcaca ataatttcat ttttactatc taaaagcata aaagcaggaa aagcataaat
     5581 catcaaaagc aaacaaaaca ttctataagt aatacatctt ccaaatttat cacttaaata
     5641 acctgccaaa ggaataacta aaaaccctac caatgaagct atcatcactg ctgtagtagc
     5701 tactgatttg tctaaaagta aaattttagt cacataacct acaataaaac cttgcgcaag
     5761 ataagaaggt ccattttcgc ctattcttaa gcccaccata gtccaaaaag cacgacttct
     5821 ttgccaaaaa cttctttcat cttttttcat atgcttttcg ttattaagac gcaatttcat
     5881 catttcattt ttttgctttt caaaaacagg ggtttctttg acatgaaaac gaatatatac
     5941 agcaaaaaga gcgattaaaa tacttcccat aaaaggaact ctccagcccc attctttaaa
     6001 acttgcttca tccatttgta ccatcaaaag ccatacaaaa gacgcaagca aagttccact
     6061 atttgatcct aaagcaatca cagaagaaac aagccctctt ctcttgctag gagcatattc
     6121 tcctagcata actgttccac ctgaaagttc agctcctgcg ccaaaaccct gcataaaacg
     6181 taatgcaacc aaacaaatag gcgcccaaac accaatcact gcataacttg ggataaaacc
     6241 tatcagagta gttgaaattc ccattaaagc tattgtagcc atcataacat tttttcttcc
     6301 gtgtttatca cctaaatgac caaaaaacaa agccccaata ggtcttgcaa taaaacctat
     6361 gccataagtt acaaaactaa gcaaaagtgc aattactgga gtttgctcag gaaaaaatac
     6421 ttctgaaaaa attgttgcag ctgctaaacc ataaagtgca aaatctgcat attccatagc
     6481 agttcccaac cagcaagaaa aaactgcctt tttaaaaact tttctacctt caggtgtgtt
     6541 aaaattctta tctgcaattc catcaatttg ctgatttgtc attacatttt ccttacatta
     6601 ttcatataaa atttttactc tactcgatat tatgactaaa aattgaagta ttttcgctta
     6661 aatatcttta aatttcgaga cattttaagc aaaattttga aataatataa ccaaaatata
     6721 ttttatcaaa agaagaaatt attatgaaaa ctttaactat tattgatact tttggatttt
     6781 ttttcagact ttactacgca ttaaaaggtt ttaaaaattc acaaggacaa gctagtggaa
     6841 tgattagcgg ttttgcaaat tttatttata gcttaaaaaa tgaatataaa agtgattata
     6901 ttgtttttgc attagattcc aaaggaaaaa cttttcgtag cgaaattgat ccaaactata
     6961 aacaaaatcg cactccaccg ccacctgaac ttctagaaca aattccaatt tgcataaaga
     7021 tgatagaaaa aatgggtttc ataagcgttt ctcaagaagg ttatgaagct gatgatatca
     7081 ttgcttcttt tgtaaaaact tgtgaaaata gagatatttt tgtacgtatt atcactcaag
     7141 ataaagatct ttatcaactc ataaaagatg gtaaaacaag catttacagt cctatttcta
     7201 aaaacgacta tgatgaagca gcgtgtttag aaaaatacgg agtaaaacct aatcaaatca
     7261 gagatttttt agctctttgt ggggatagtt ctgataatat tccaggcgtt aaaggtatag
     7321 gtgcaaaagg agctaaaacc ttgcttgatg agtttggtag catagaggga atttatgaaa
     7381 atttaaccct agtacgtaac gaaagaagtc gtaacttgct tttagagggt aaggaaaatg
     7441 tatttttaag caaaaaatta gcttctttgt atgacaattt agaagtacaa aatctcatag
     7501 aaaaagccac ttatcctgat gaagaacctc ttttaaaaat acttgaaatt ttagaacatt
     7561 acgaacttaa tactttgctt aaaaaactgc gtcaaaatcc tgataataaa gataaaaatt
     7621 taggttttaa agccacttta gtacaagatg aaaacaaact ttttgaaatt ttaaataccc
     7681 ttgataaaga aagtattatt gcttttgata ccgaaaccac aggacttgat actaaagaag
     7741 caaaaattgt tggttttagt ttttgcatga atgaaaatga agccttttac gtgcctttaa
     7801 ctcataatta tcttggagta ggtgagcaaa tctcattgca aagtgccaaa aaagctatag
     7861 aagcaatctt taatcatttt gttatagggc acaatctcaa atatgatttt aaaatcattc
     7921 aaaacaattt tgacttaaat ttacctcaaa aatacgcaga tacaatgatt ttggcatggc
     7981 ttaaaaatcc ttctttaaga gtaaatatgg atgatttagc cttaagactt tttaattacg
     8041 aaaccttgca ttttgaaagc cttgttaaaa aaggagaaaa ttttgcaagt gtagaacttg
     8101 aaaaagcttg taaatacgct gcagaagatg cttatatcac tttaagattt tatctttatt
     8161 ttttaaaaaa tcttgaaact cctttattag aacttgctaa aaactgcgaa tttgatttca
     8221 ttaaaatcat tatgatgatg gaagaaaatg gcataaagct tgatacaaat gcacttgaaa
     8281 tccttatgaa aaaatttgaa aatgaaatca aaaatttaag tgaagaaatt tatactcttt
     8341 gcgaggatag atttaatcta aattcaccta aacaaatggg tgatatactt tttgaaaaac
     8401 tcaaactccc aagcggaaaa aaaggaaaaa caggatattc taccgatgaa aaagttttaa
     8461 atatactttt agataaacat cctgtaattg ctaaaatttt agattataga gaacttgcca
     8521 aactttattc cacttattgc gaacctttgt taaaactagc gttaaaagat aaaaattcac
     8581 gcatttattc aagtttttta caaactggaa ccgctacagg acgtctttca tctaaggatc
     8641 caaatttgca aaacatccct gcacacggac aatatgcaaa agattataaa tcttgctttg
     8701 tagctaaaga tggatttagt tttatctctc ttgattattc tcaaatcgaa cttagaatac
     8761 ttgcacattt tagcgaagat gaaaaacttt taaatgcttt tgccaatgat gaagatatac
     8821 acgcaagaac agcaataatg atttttggtg aaagcaatta tgaaaccaga agtgttgcaa
     8881 aaagtataaa ttttggactt atttatggta tgggttataa aaccttaagt caaaatttaa
     8941 aaatagaagc taatttagcc aaatcttaca tagaaaaata ttttgaaaat tttactagca
     9001 ttaagaaata ttttgaaaaa gttaaaaacg aagctaaaca aaatggtttt attgttactt
     9061 taagcggtcg caagcgttat tttgattttg aaaacgcaaa acctatgcaa attgccatgt
     9121 atgaaagaga aagcattaat tcaatcttgc aaggctcagc agcagatgta atcaagcttg
     9181 caatgctaga aatcaataaa gaattaaatg aagataaaaa gcttatttta caaattcatg
     9241 atgaattaat ttttgaagta aaagacgatt tgtgtgaaaa ttttgtaaaa aaaactagag
     9301 atattatgga aaatatagta aaattaaaag taaaattaaa aacaagttca agtatcgcca
     9361 aaaattgggg cgatttaaaa taatcaagga gataattaat ggatctttca accatattag
     9421 gaatggtgct tgcagttact agtatttcag taggagatat attagaagga ggaaatcctt
     9481 tacatgttat tcatctttct tcctttctta tagttatgcc aacggctgca ttttgtgcaa
     9541 tgacttctac acataaaaaa attgtaaaag cagcttataa agaactcaaa gttgtcttta
     9601 aaggttctgg agtaaatcta cctgaaagga tagctcagtt aatagaattt gctattattg
     9661 caagaagaga tggtctttta gcattagaat caagaaccaa tgagattgaa aatgaatttt
     9721 taaaaaatgc tatgatgatg cttgtagatg gtaaaagctt tgaagaaatt cacgaaagca
     9781 tggaaataca aaccgaacaa cttgaagagc attataaaga atgcgcagaa tattggatag
     9841 tatttggaga aacttgccct accatgggac ttgttggagc ggtttttggt cttattctag
     9901 ctcttaaatt gctagacaat cctcaagcaa tggcagcggg tatttcaggt gctttcacag
     9961 ctacagttac gggaattttt ggcgcttatg cactttttgc tccttggggg aaaaaattaa
    10021 aagctaatgg aatggatctt gtaaaagagc aaattgttat tactgaagct ataaaaggaa
    10081 ttgcagaagg tgctaatcct agagatttag aagctaaact ttttaacttc ttaagtcacg
    10141 atgatccaag aatttcacaa tttgacaaag gttaaaaatg gctaaaaaac ataaatgccc
    10201 agaatgtcca gcaggtgaaa aatgggctgt gccttatgca gactttctaa gtttgctttt
    10261 ggcacttttt attgctcttt gggcaatttc taaaacaaat cctgctaaag tagaggcttt
    10321 aaaaactgaa tttgttaaaa tctttgatta cacctctact caaacagtca aagaagagag
    10381 taaaacccaa gaaaaatata aaggcgcagc aaaagaagaa agcgatgaac tcaaatcgtt
    10441 aaaacaaatg actatgacac agcaagaaac tatcaaacgt cttcaagcag ctctagatca
    10501 aagcgataat caggttgctc ttaaccttcc atctaaagtt gaatttgaaa gaggtagtgc
    10561 tcaaatcgtt tcagctgata tacaagatta tttaaaacgt atggctgagc taacaacata
    10621 tttgccacct caagcaaaaa tagaaattag aggctataca gacaatagcg actctattat
    10681 aagaagttat gaactcgcct accaaagagc ggaaaatgta ttaaaatatt ttatagaagg
    10741 tggagcaaat ttgaaaaata ttagcattaa aagctacggg cttaataatc ctatcaatgg
    10801 aaatccacaa gctctagaaa ataatagagt agaaatatat tttaaagtcg atacagcaga
    10861 tacaagtact caaaaatcgg ttcttgagct tattaacaaa ataggaacta aagcacctta
    10921 aaagttttag tttccttttt ttacttgacc agctaaacga ctcttattat ttgtattata
    10981 aacaaatcct agcacctcag ctacagcttt aaacatttcc ctaggaataa gatcattaac
    11041 atcacaagct ttataaagct ctcttgctaa aggaggattt tcataaacta caacattatt
    11101 ttcataggct acttgtttta tgcgaagagc gagaaaatcc actcctttgg caacaaccct
    11161 aggggcttgt tctttacttg tatcataacg aatagctacg gcataatgcg ttgggtttgt
    11221 gatcaccaca tccgcacctg caacatcttg aaccatacga cgacgcgcag cttccatttg
    11281 aagtctacga attctacctt taacctgagg atctccttcc atttgtttat actcatcttt
    11341 tatttcttgt ttgctcatac gcaaaccttt aaaatactga aaacgcacca aaaaaacatc
    11401 taaaacagca ataattaaaa aagcaactat aacaatagct gctaaaacaa tagctctgtc
    11461 tcttagccaa gcaagctgtg taaccatagt ataaagctca actcttggaa gctcttgcat
    11521 aaatttaagt aaaactataa aagctatagt aaaaacaata cccactttta aaataatttt
    11581 tatactttca acaatttttt tcaatgaaaa aaggtttttt aaacctttta gaggattgat
    11641 ttttcctaaa tttggcataa taggtttagt tgtaaaaata aaaccaaatt gcataatatt
    11701 tcccaaaacc ccagcaatca taatacttaa aacaataggt gcaagaataa ttaaaacctc
    11761 aaaaatgctt ttaatcataa tggcttgaat aatacgcaaa tcaaattcaa caccaataaa
    11821 actttgatag tatctatata aatttacaat tctctcgccc ataaaactca tcataaataa
    11881 agttatagtt actccaatta tcaaagttac aatagctgcc gcatcttgag actttggaac
    11941 attaccttct ttacgcgcat cttctatctt tttggacgtg ggttcttctg ttttttcttg
    12001 atcttcgcct gccatatttt agcctaaata aaaattttaa tatgtgtgta aaattatagt
    12061 agaaaattta tgaatttcaa ttaaagaata aaaatgaaga aaaagcctcg taaagaggct
    12121 ttatactaag aaattaaagt ttagcttcgt ttttgccaag atattcagcc acgcctttag
    12181 ggttagcttt cataccttca tcgcccttat tccatcctgc aggacaaact tcaccatgct
    12241 catttgtaaa aagcatagta tcaaccattc ttaacatttc atctatattt ctacctagtg
    12301 gtaaatcatt aaccacagca tggcgaactg ttccatcagc atcaagcaag aacgaaccac
    12361 gaagggcaac tgcttctgca taaagtacat caaaatttct agcaatctgc ttagttaagt
    12421 cagcaacaag cggaaattta acctgaccaa taccaccttg atttactgga gtatttttcc
    12481 aagcaaaatg tgaaaattca ttatctcctg aaattccaat tacttcaatg ccacgatttt
    12541 taaattcttg atatcttttg tcaaaagcta taatttctga aggacaaaca aaagtaaaat
    12601 cttttggata aaagaatact accgctcctt ttggacctat gtttttataa agattaaaat
    12661 cttgaacaat ttcattgttt cccaatactg ctggagcagt aaaatctaaa gcttttttag
    12721 taact
//
LOCUS       DAZBIH010000040        12630 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.040, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000040 DAZBIH010000000
VERSION     DAZBIH010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12630)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12630)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12630
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.040"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1011
                     /gene="ccoG"
                     /locus_tag="ACHFOB_000947"
     CDS             <1..1011
                     /gene="ccoG"
                     /locus_tag="ACHFOB_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0008535 - respiratory chain complex IV
                     assembly [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c oxidase accessory protein CcoG"
                     /protein_id="HFN5799758.1"
                     /translation="YFKKFLGVIIFYFISLVAVSNLLWYFIPPEDFFNYIQNPGEHLL
                     LLGILFCASLLFTLDITYLQEKFCVYICPYARIQSVMFDHDTMQVIYDEKRGGLIYDG
                     HTKLHKKPPEGECIGCEACVSICPTHIDIRKGMQLECINCLECADACSKVQSKFNRPS
                     LINWTSAKAIETRSKVHYLRFRTIAYFIVLLIALLALIIMGSKKESMLLNINRSSELY
                     NISNVKGELVISNAYTFLFQNTDSKPHEYYFTANLEGINDGIEIIRPNKPFKLKAGEQ
                     VKKIVVIRATKNLANNDKKDVIFPLHIKAYAKDNEKISVFRKSIFVYPKSTLIKDKNE
                     LK"
     gene            998..1630
                     /gene="cmeR"
                     /locus_tag="ACHFOB_000948"
     CDS             998..1630
                     /gene="cmeR"
                     /locus_tag="ACHFOB_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux system transcriptional
                     regulator CmeR"
                     /protein_id="HFN5799759.1"
                     /translation="MNSNRTPSQKVLARQEKIKAVALELFLTKGYQETSLSDIIKLSG
                     GSYSNIYDGFKSKEGLFFEILDDICKKHFHLIYSKTQEIKNGTLKEILTSFGLAFIEI
                     FNQPEAVAFGKIIYSQVYDKDRHLANWIENNQQNFSYNILMGFFKQQNNSYMKKNAEK
                     LAVLFCTMLKEPYHHLNVLINAPLKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            1725..2828
                     /gene="cmeA"
                     /locus_tag="ACHFOB_000949"
     CDS             1725..2828
                     /gene="cmeA"
                     /locus_tag="ACHFOB_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HFN5799760.1"
                     /translation="MKLFQKNTILALGVVLLLAACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIGVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            2828..5950
                     /gene="cmeB"
                     /locus_tag="ACHFOB_000950"
     CDS             2828..5950
                     /gene="cmeB"
                     /locus_tag="ACHFOB_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HFN5799761.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            5943..7421
                     /gene="cmeC"
                     /locus_tag="ACHFOB_000951"
     CDS             5943..7421
                     /gene="cmeC"
                     /locus_tag="ACHFOB_000951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HFN5799762.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(7444..7695)
                     /gene="cmeU"
                     /locus_tag="ACHFOB_000952"
     CDS             complement(7444..7695)
                     /gene="cmeU"
                     /locus_tag="ACHFOB_000952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HFN5799763.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            7824..9170
                     /locus_tag="ACHFOB_000953"
     CDS             7824..9170
                     /locus_tag="ACHFOB_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HFN5799764.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFAYYQIICEFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(9167..9619)
                     /gene="hemJ"
                     /locus_tag="ACHFOB_000954"
     CDS             complement(9167..9619)
                     /gene="hemJ"
                     /locus_tag="ACHFOB_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HFN5799765.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEIVKIQERKLYFYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(9603..10073)
                     /gene="lspA"
                     /locus_tag="ACHFOB_000955"
     CDS             complement(9603..10073)
                     /gene="lspA"
                     /locus_tag="ACHFOB_000955"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFN5799766.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGLRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIVVLFIYLFWQKTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(10066..11403)
                     /gene="glmM"
                     /locus_tag="ACHFOB_000956"
     CDS             complement(10066..11403)
                     /gene="glmM"
                     /locus_tag="ACHFOB_000956"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFN5799767.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEAKDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(11497..12522)
                     /locus_tag="ACHFOB_000957"
     CDS             complement(11497..12522)
                     /locus_tag="ACHFOB_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HFN5799768.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         4537 a         1998 c         1902 g         4193 t
ORIGIN      
        1 tattttaaaa aatttcttgg agtaataatt ttttatttta tatctttagt tgctgttagt
       61 aatttacttt ggtactttat tcctcctgaa gattttttca attatattca aaatcctggc
      121 gagcatctac ttttacttgg aattttattt tgtgctagct tgctttttac tttggatatt
      181 acctatttac aagaaaaatt ttgtgtttat atctgtcctt atgcaagaat acaatctgta
      241 atgttcgatc atgatacaat gcaagtgatc tacgatgaaa aacgcggggg cttgatctat
      301 gatggacaca ccaaacttca taaaaaaccg cctgagggag aatgcatagg ttgtgaagcc
      361 tgtgttagca tctgtccaac tcatattgac atacgcaaag gaatgcaact tgaatgtatt
      421 aattgtcttg aatgtgccga tgcttgctct aaggtacaaa gtaaatttaa tcgtccaagt
      481 ttgatcaatt ggacaagtgc aaaagctatt gaaacgcgtt ctaaggttca ttatttaaga
      541 tttagaacga tagcatattt tatagttctt ctaattgctt tactggcttt aatcatcatg
      601 ggaagcaaaa aagaaagcat gcttttaaat atcaatcgta gtagtgaatt atataatatt
      661 tcaaatgtta aaggtgaatt agtcatttca aatgcttata cctttttgtt tcaaaataca
      721 gattctaaac ctcatgaata ttattttaca gcaaatttag aaggaataaa tgatggaatt
      781 gaaatcataa gaccaaacaa accttttaaa ttaaaagcag gagaacaagt caaaaaaata
      841 gttgttatca gggctacaaa aaatttagca aataatgata aaaaagacgt aatctttcct
      901 ttacatataa aagcttacgc aaaggataat gaaaaaattt cggtttttag aaaaagtata
      961 tttgtatacc ctaaaagcac tcttataaag gataaaaatg aactcaaata gaacaccatc
     1021 acaaaaagtt ttagccagac aagaaaaaat caaagcagtg gccttagagc tttttttaac
     1081 aaaaggatac caagaaacaa gtttgagtga tattattaaa ttatctggag gatcttattc
     1141 taatatttat gatggtttta aaagtaaaga agggctattc tttgaaattt tagatgacat
     1201 atgtaaaaaa cactttcatc ttatttattc caaaacacaa gaaattaaaa atggcacttt
     1261 aaaagaaatt ttaacttctt ttggtttagc ttttatagaa attttcaatc aaccagaagc
     1321 tgtagccttt ggtaaaatta tctattctca agtttatgac aaagatagac atcttgccaa
     1381 ttggatagaa aataatcaac aaaatttttc ctataacata cttatgggtt ttttcaagca
     1441 acaaaataat tcttatatga aaaaaaatgc agaaaaactt gctgttcttt tttgcactat
     1501 gttaaaagaa ccttatcacc atcttaatgt tttaattaac gctcctttga aaaataaaaa
     1561 agaacaaaaa gaacatgttg aatttgttgt aaatgttttt ctaaatggaa tcaatagctc
     1621 caaagcttaa aaaataattt tattaaccaa aattaagata taattagcca aaaatttctg
     1681 taataaatat tacaattttt aatttaattt ttcaaggcaa aaccatgaaa ttatttcaaa
     1741 aaaatactat tttagcttta ggtgttgtgc ttttactcgc tgcttgcagc aaagaagaag
     1801 caccaaaaat acaaatgccg cctcaacctg taacaaccat gagtgctaaa tctgaagatt
     1861 taccacttag ttttacttac cctgctaaac ttgtcagtga ttatgatgtc attataaaac
     1921 ctcaagttag cggcgtaata gtaaataaac tttttaaagc tggagataag gtaaaaaaag
     1981 gacaaacatt atttattata gaacaagata aatttaaagc tagtgttgat tcagcttacg
     2041 gacaagcttt aatggctaag gcaactttcg aaaatgcaag caaggatttt aatcgttcta
     2101 aagctctttt tagcaaaagt gcaatctctc aaaaagaata cgactcttct cttgctacat
     2161 ttaacaattc aaaagctagt ctagcaagtg ctagagcaca gcttgcaaat gcaagaattg
     2221 atctagatca taccgagata aaagctcctt ttgatggtac tataggagat gctttagtta
     2281 atataggaga ttatgtaagt gcttcaacaa ctgaactagt tagagttaca aatttaaatc
     2341 ctatttacgc agatttcttt atttcagata cagataaact aaatttagtc cgcaatactc
     2401 aaagtggaaa atgggattta gacagcattc atgcaaattt aaatcttaat ggagaaaccg
     2461 ttcaaggcaa actttatttt attgattcgg ttatagatgc taatagtgga acagtaaaag
     2521 ccaaagccgt atttgataac aataactcaa cacttttacc gggtgctttt gcaacaatta
     2581 cttcagaagg ttttatacaa aaaaatggct ttaaagtgcc tcaaataggt gttaaacaag
     2641 atcaaaatga tgtttatgtt cttcttgtta aaaatggaaa agtagaaaaa tcttctgtac
     2701 atataagcta ccaaaacaat gaatacgcca ttattgacaa aggattgcaa aatggcgata
     2761 aaatcatttt agataacttt aaaaaaattc aagttggtag cgaagttaaa gaaattggag
     2821 cacaataatg ttttctaaat tttttatcga aagacctgtt tttgcttcag ttgttgcaat
     2881 tatcatttct ttagctggag ccataggtct tacaaattta cctatagaac aatatccttc
     2941 tttaacccct cctacagtta aagtaagtgc aacttacaca ggagctgatg cacaaaccat
     3001 tgcttcaaca gttgcaagtc ctatcgaaga tgcaatcaat ggcgcagata atatgattta
     3061 catggattca acttcaagtt cttcaggaac tatgagtttg actgtttatt ttgatatcgg
     3121 tacagatcct gatcaagcca ccatagatgt taataataga atttcagccg caactgcaaa
     3181 aatgccagat gcagttaaaa aacttggagt aacagttaga aaaacttcct caacaacact
     3241 tgctgcaatt tctatgtatt caagtgatgg ctcaatgagt gcagtagatg tatataacta
     3301 tatcacttta aatgttttag atgagttaaa aagggttcca ggagttggag atgcaaacgc
     3361 tataggaaat cgtaattatt ctttaagaat ttggctcaag cctgatttat taaataaatt
     3421 tggaatcaca gctactgatg taatttctgc ggttaatgac caaaatgccc aatacgcaac
     3481 tggtaaaatt ggcgaagaac ctgtaaccca aaaatcccct tatgtttatt caatcactat
     3541 gcaaggaaga ctacaaaatc ctagtgaatt tgaaaacatt attttaagaa caaataatga
     3601 tggatcattt ttaagactta aagatgtagc tgatgtggaa ataggatcac aacaatacag
     3661 ctcacaagga cgattaaatg gcaatgatgc agttccaatt atgattaatc ttcaatcagg
     3721 ggcaaacgca ttgcatacag cagaacttgt tcaagctaaa atgcaagaac tttcaaaaaa
     3781 ttttccaaaa ggtttaacat ataaaattcc ttacgataca acaaaatttg taatagaatc
     3841 aatcaaagaa gttgttaaaa cttttgttga agctctaatt ttagttatca ttgttatgta
     3901 tatgttctta aagaatttcc gtgcaacact tattcctatg atagctgtac ctgtttcatt
     3961 gttaggaact tttgctggac tttatgtttt aggttttagt attaacttgc ttacgctttt
     4021 tgctttaatt ttagccatag ggatcgttgt agatgatgcg attatagttg tagaaaatat
     4081 tgataggatt ttacatgaaa atgagcaaat aagcgtaaaa gatgctgcta tccaagcgat
     4141 gcaagaagtt agctctccgg ttatttcaat tgttcttgtg ctttgtgctg tttttgtacc
     4201 agtttctttt atatcaggtt ttgttggaga gattcaaaga caatttgctc ttaccttagc
     4261 tatatctgta accatatcag gttttgttgc tcttacctta acaccttctt tatgtgcact
     4321 ctttttgcga cgcaatgaag gagagccatt taaatttgta aagaaattta atgatttttt
     4381 tgattggagt acctctgtat ttagcgcagg agtagcatat atcctaaaaa gaaccattcg
     4441 ttttgtttta attttttgta ttatgcttgg agcaattttt tatctctata aagcagtacc
     4501 aaattcttta gttcctgaag aagatcaagg tttgatgatt agcattatta atcttccttc
     4561 agcttcagca ctccatagaa caatttcaga ggttgatcac ataagccaag aagttttaaa
     4621 aactaatgga gttaaagatg caatggctat gataggattt gatcttttta caagttcact
     4681 caaagaaaat gccgctgcaa tgtttatagg tttgcaagat tggaaagata gaaatgtaag
     4741 cgctgatcaa attatagccg aacttaataa aaaatttgct tttgatcgca atgcttcaag
     4801 tgtatttata ggcttacctc ccatacctgg attaagtatc acaggcggtt ttgaaatgta
     4861 tgttcaaaac aaaagcggaa aaagctatga tgaaatacaa aaagatgtaa ataaacttgt
     4921 tgctgcggcc aaccaaagaa aagaactatc aagagtaaga acaacacttg atacaacttt
     4981 ccctcaatac aagcttataa ttgatagaga taaattaaaa cactacaatc ttaacatgca
     5041 agatgttttt aacacgatga atgcaactat aggcacttat tatgttaatg atttttctat
     5101 gctaggtaaa aacttccaag taaatatccg cgcaaaaggt gattttagaa atacacaaga
     5161 tgcattaaaa aatatttttg taagatcaaa tgatggaaaa atgataccac ttgattcttt
     5221 cttaacttta caaagaagtt cagggcctga tgatgtaaaa cgattcaacc ttttcccagc
     5281 ggcacaagtt caaggtcaac ccgcaccagg ttatacttca ggtcaagcta tagaagcgat
     5341 tgctcaagta gcaaaagaaa ctttagggga tgattattcc atagcttgga gtggatcagc
     5401 ttatcaagaa gtttctagta aaggaacagc aagctatgct tttgctttag gtatgatatt
     5461 tgtcttttta attctagctg cccaatatga aagatggctt atacctttag cagttgtaac
     5521 agctgtacct tttgcggtat ttggatcatt tttattggta tatttaaggg gatttagcaa
     5581 tgacatatat tttcaaacag gacttttgct cttgattgga ctttcagcta aaaatgctat
     5641 cttaatcgta gaatttgcaa tggaagagcg ctttaaaaaa ggcaaaggag tttttgaagc
     5701 agctgttgca gcagcaaaac ttcgttttcg tcctatcata atgacttctt tggcatttac
     5761 ttttggggtc ttgccaatga ttttcgcaac aggagcagga agtgcttcaa gacactcttt
     5821 aggaacaggg cttattggtg gaatgatcgc agcatcaact ttagcgatat tctttgtgcc
     5881 tttatttttc tatcttttag aaaattttaa tgaatggcta gataaaaaaa gaggtaaggt
     5941 tcatgaataa aataatttca attagtgcta tagcaagttt tactcttttg atttcagctt
     6001 gctctttaag tccaaattta aatattcccg aagcaaacta tagcattgat aataagcttg
     6061 gagccttatc ttgggaaaaa gaaaacaata gctctatcac aaaaaattgg tggaaagact
     6121 ttgatgatga aaatttaaat aaagtggttg atttagcact taaaaataat aatgatttaa
     6181 aacttgcttt catacacatg gaacaagctg ctgctcaatt aggtatagat tttagcagtt
     6241 tgttgccaaa atttgatggt agcgcaagcg gaagtcgtgc aaaaacagct ataaatgctc
     6301 caagcaatcg aactggggaa gtaagttacg gtaatgattt taaaatggga cttaatttaa
     6361 gctatgaaat cgatctttgg ggaaaatatc gcgatacata tcgcgcctca aaatcaggct
     6421 ttaaagcaag tgagtatgat tatgaagctg caagactttc tgttatttca aatacagttc
     6481 aaacttattt taatcttgta aatgcttatg aaaatgaaaa tgctcttaaa gaagcttatg
     6541 aatctgcaaa agaaatttat aggattaatg atgaaaaatt tcaagttggc gctgtaggtg
     6601 aatatgaact tgctcaagca agagccaact tagaaagtat ggctttgcaa tataatgaag
     6661 caaagttaaa taaagaaaat taccttaaag ctttaaaaat tttaacttca aatgatttaa
     6721 atgacatact ttacaaaaat caaagctatc aagtttttaa tcttaaagaa tttgacattc
     6781 caactggaat ttcaagtacc atcttgcttc aacgtccaga tattggctct tctttagaaa
     6841 aattaactca gcaaaattat cttgttggag tagctcgcac ggctttctta cctagccttt
     6901 ctttaacagg attattggga tttgaaagcg gggatttaga taccttggtt aaaggaggtt
     6961 ctaagacttg gaatataggt ggaaacttta ctctgcctat ttttcattgg ggtgaaattt
     7021 accaaaatgt aaatttagcc aagcttaata aagatgaagc ttttgtaaat tatcaaaata
     7081 ctttgattac tgcttttgga gaaattcgct atgctttagt agctagaaaa actatacgct
     7141 tacaatacga taatgcacaa gcaagcgaac aatcttacaa aagaatctat gaaattgcta
     7201 aagaacgcta tgatatagga gaaatgtctt tgcaagatta tttagaggca cgtcaaaatt
     7261 ggcttaatgc tgcggttgct tttaataata ttaaatattc ttatgccaat tccatagtag
     7321 atgtaatcaa agcatttggt ggaggatttg agcaaagtga agatacgagt aaaaatataa
     7381 aagaagaatc aaaaaattta gatatgtctt ttagagaata gtttgttcta ttctctaaat
     7441 aaattaaaaa tctttgtcta aatctgcatc tgtaatttca taagccttgt aaatagcagg
     7501 caataatttt cttatagcat aatcaaaatg ataaaattgc ttatatacct cttctggatt
     7561 taaattttta gcattcttaa aatcaaatac ttcagtatta ttgattttgg caatattttc
     7621 atcaaaataa gagtaaaact ctgctctttg tttaaacaaa gcatttaaat tttgaacaat
     7681 tttggcttta tccattttta tatccttttt aaataattta aaaacttaat cccatttttt
     7741 atttaagaaa taaaaaattt actcctattt tagctaaaaa ttgataaagt tatgtcttaa
     7801 atattttaat atataggcca cttatgaatt tatttcaaaa tttagcttta aaatactctc
     7861 atactatgat ggaaaaatcc ctccaaaaag gtttcaatgt cgaactttta aaacaacccg
     7921 aagaaaaaat tccaaaacaa gacaaaagct atatgcttta tgcccatgta cctttttgcc
     7981 atactttttg tccttattgt agctttcata aatattatta tgatgaaaat ttagccaaag
     8041 tatattttca aaatcttaga gaagaaatta aaatcatgaa agataaaggt tttgatttta
     8101 cctccatgta tgtgggtggt ggtacaacac tgattaatga agaggaatta ttaaaaacct
     8161 tagaactttg taaaaaatta tttaatataa aagaaatttc atgcgaaagc gatccaaatc
     8221 atattgatcc aaataaactt tctatgttta aaggtataat cgatcgttta agttgtggga
     8281 ttcaaagttt tgatgatgaa actttaaaaa aagtggcaag atacaataaa tttggttcat
     8341 ctaaagaact tcaagaaaaa atttcaaaag ctttaggaat tttgcctatt tttagcatag
     8401 atcttatttt caatcttcca ggacaaagtg aaaaacaact tttaaatgac ttagaaattg
     8461 ctaaaaattt agccccacaa caaattacaa cctatccttt aatgaaatca aatctcacca
     8521 aagacaatat cgctaaaagt ctaggtgtaa gcattaaaga taatgaattt gcttattatc
     8581 aaatcatatg cgaatttttt aaagactata cccaaaacaa tggttggagt ttttctttag
     8641 aaaaaaacaa gcttaatgac gaatatgtta gttctcatca tgaatatcta ggagtaggta
     8701 gtggagcttt tagcttttta gatggggagc ttttaattaa tgcatttaat ctaaatgatt
     8761 atgctaaatt tatacaagaa aaacaaaatg ctaatatagc caaagcttgt tttgataaaa
     8821 aagagattat caaatatgtc tttttaactg aaattttttc agggaaaata gaaattgata
     8881 aattcaacaa aactctaaat tgcaacctcg aaaaagaact tttcatagaa cttttagggc
     8941 ttaaaacaag tggtgccatc ataaaagatc aaaatgcttt aatcgcaact gaatttggtc
     9001 aatatctttt tgtggtttta atgaaagatt tttacacagg aatggatctt gtgcgtgcag
     9061 tatttagaga tgataagcgt cttaaaaata aagattatat cgatatcatg aaagaaaata
     9121 ttgatccgct taactccgct agtatggaat ttaaagcgga gacaaactaa aagggacgaa
     9181 caaccatcat taaagcgata ataataaaca ttatagtcgg aaattcatta taaattctaa
     9241 agtatttccc acttttagta gaagtatcat ttgctaaagc ttttaaacaa taataattat
     9301 gtatatgaaa aataatcaaa agtgtaacac aggtaagttt aacatgcata aaacccgcac
     9361 ctaccattaa aacttcctta tgagcatgta acattaaact tcctgtgatt aaagttacaa
     9421 tcattgcagg agtttgtata taaaaataaa gttttctttc ttgaattttt acaatctcga
     9481 caaaaccttt attgtcttta tgttcagcat gatacacaaa aagacgaggt aaataaaaaa
     9541 gacccgccat ccaagaaaca aatgccaaat aatgcaccca tttaatccaa aaataataat
     9601 cattaatcca ttctgtcatc ttttttcctt tttttaaata tttcttgtat taaaatcaaa
     9661 gccacactta tatttatcat gacatctgca acattaaaaa tagcaaaatt aaaccattta
     9721 tgccaaaaaa acatatccac tacacctcca tgtataaaac gatccaataa atttgaaacg
     9781 ccagcaccaa gcatcattcc aaaagctatg ctatgagttt ttaaaagtgt tttttgccaa
     9841 aaaagataaa taaaaagcac gacaattaaa gcaagatgta aatattttaa attatgttct
     9901 aaaaaactca acattgaaaa agctacgcct gtatttagag cataagttaa atctaagtat
     9961 tcactctgcc atctaagtcc tgctaaagtt aaggatttca cccattgatc aagggcaaaa
    10021 accaaaacaa aggcacccca aaaataaaaa ataaatttaa aagttttagc catttaaagc
    10081 tttcttaaaa aactccacaa catttttcat ttctttttct aagagcttaa tatctttggc
    10141 ttctagtaaa agtcttatca aattttctgt tccagaatag cgaaataagg tattgatatt
    10201 tttattttct aaatcttttt ttaattcttt taaaccttta attttatcta aatctttttt
    10261 ttctgcaatt ttaagattgg ttaaaagctg aggataaggt ttgacttgac ccaaaataga
    10321 gcttgcagat tttttcttgg aaagcattaa agcactaaat tgcaaagcag ctatcaaacc
    10381 atctccagtt tttgcataat cactaaaaat aatatgccca ctttgctctc caccaaaatt
    10441 tccaccatta gcttttaatt tttcaagcac atatttatcg cccacattac aagtatcaag
    10501 ttctatacca tgtttattta aaaattcttt taaagcacca ttactcatta tagtggctac
    10561 aacacttgat tgtaatttac cttgttcttt aagataaagt gctaaaactc ctaataaact
    10621 atctccatta gccacttcgc ctttttcatc tacaaccacc aaacgatctg catcaccatc
    10681 aaaagcaaag cccacatctg cacgcaaacg ctttacctca gcagctaaat ttgcaggatg
    10741 taaagctcca caattttcat tgatattaag tccattaggt ttatcgctca ttactataac
    10801 ttcagcacct aattccttaa aaacagtagg tgctacctta taagctgccc catgagccac
    10861 atctaaaacc acacgcaaag actttaaagt aagatctttt ggaaaagaat ttttaataga
    10921 aacaatatac cttcctataa catcatcaat tctttttgct tgaccaattt tttccatatc
    10981 taccttagag gcttgtataa gcttatcatc aaaataaatt tcttctattt ttttctctat
    11041 atcttcacta agtttgtttc catgagcatc aaaaaattta ataccattat cataataagg
    11101 attgtgagaa gctgaaatca taatccctgc gtcacaacgc atatcttcag ttaagaatgc
    11161 aatcgcagga gttggcatag gaccaatttg tataacatta tatcctatag aagtaagccc
    11221 tgaaacaata gcattttcta tcatatagcc gcttcttctt gtatcttttc ctactaagat
    11281 attattagta atacttttat ctttaaaata aatacccgca gccattgcta aacgcatagc
    11341 caaaaaacta tctaaaaatt cacccgcttt tccacgaact ccatcagttc caaaaagttt
    11401 cattgcaaac ctttctagca aaatttaaag acaattataa caaagctaag ataaagaaat
    11461 ttaaacaagc tctaaaaata gagcttgttt ggaaccttat agttcaggtt taggagtttt
    11521 ttcagtagaa ataggaagtt gtggataaac aattgctggt tttgttcctg ttaaagattt
    11581 taagaaagtt tcaatacttt ttgcttcttt atcagaaatt ttaatgccaa gttgcacact
    11641 acccatttcc ttaatagcat cttttaaatt ccaaatcgca ccattatgaa aatatggagc
    11701 agtttcagca acatttctta aagttggagt ttttaccatg ccatttgcat cacctttaaa
    11761 atcacctaaa tttgcaaatt tatatttacc agcaacttca aacgcttgca tattgccacc
    11821 taaattcaca ccattatgac aagctacaca acctttatct ataaaaagct ttaagccttt
    11881 ttgttcttct tttgttaaag ctttttcatc gccttctaaa aatttatcaa aacgagatgg
    11941 agtgatcaaa gttctttcaa aatttgcaat tgcatcagca atattgtcaa aatttacacc
    12001 gcttttacca tagatttttt taaactcact cacatattca ggcaaagatg aaattttttc
    12061 tactgcaagt ttagcaggag ttgccatttc aggatcagct tggattggac ctttagcttg
    12121 atcggctaat gttcctgcac gaccatccca aaattgagta ttatttaaga ctgcattata
    12181 aactgttggt gaatttaaat gatgaggatt tgctgtccat ttatgaccta ttgcggtact
    12241 gattccatct gttccaccaa gtcctacatt atgacaggta ttacaagaaa tgataccact
    12301 ttttgaaaga cgtggttcaa aatagagctt tttgccaagc tctgcttttt caagagtaaa
    12361 ttcactagcc tttactccat tttgttttaa aatttcatca acgccttttt gatcttttgg
    12421 taaggcaaca agacctgaat ttttagcttc atctataaga cttgcagcat ttaagcttga
    12481 aaaagcaact aaggatgcga ttagcaatga ttttactttc atttacaaac tcctattaaa
    12541 gataaattaa aataaaataa taatcattta gagcttaaat aaaaataaat attattaaaa
    12601 aatatttaca attaattaat actattttta
//
LOCUS       DAZBIH010000041        12627 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.041, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000041 DAZBIH010000000
VERSION     DAZBIH010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12627)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12627)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12627
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.041"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(75..269)
                     /gene="rpmB"
                     /locus_tag="ACHFOB_000958"
     CDS             complement(75..269)
                     /gene="rpmB"
                     /locus_tag="ACHFOB_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HFN5799769.1"
                     /translation="MARVCQITGKGPMVGNNVSHANNKTKRRFLPNLRTVRVTLEDGT
                     TRKMRIAASTLRTLKKQNSK"
     gene            409..1056
                     /gene="rpe"
                     /locus_tag="ACHFOB_000959"
     CDS             409..1056
                     /gene="rpe"
                     /locus_tag="ACHFOB_000959"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004750 - D-ribulose-phosphate 3-epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HFN5799770.1"
                     /translation="MYVAPSLLSANFLKLEEEVKAIEAAGADLLHIDVMDGHFVPNLT
                     FGPCVIEKISTISKLPLDVHLMVKDVSKFIDLFIPLKPKFISFHIESEVHPIRLCEYI
                     RSQGIHPAIVLNPHTSIDSIKHMLEFVDMVLLMSVNPGFGGQKFLPLVHEKIKELRQM
                     IDKKNAKVFIEVDGGVNGLNASDLEESGADILVAGSYIFSSNDYKTAISSLKLEF"
     gene            1053..1814
                     /locus_tag="ACHFOB_000960"
     CDS             1053..1814
                     /locus_tag="ACHFOB_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exonuclease"
                     /protein_id="HFN5799771.1"
                     /translation="MSLQQIDQIISILNKQSKPYDWVMQEFAKVEELKNFDLDLETFE
                     LLGLGLTLNKDNIFTLKTRTTKIKDEIFCIVDIESTGGVSKGEILEIGAVKIQNSKEI
                     ARFQSFVKVKEIPENITELTGITYEMVENAPSLAKVLSDFRLFLKDSIFVAHNVRFDY
                     SFISRALNECGFGILLNRRICTIEFAQCCIESPKYKLEVLKEFLGVENTHHRALDDAL
                     AAAEIFKYCLGKLPYHIKTTEELINFTKTARIKQK"
     regulatory      1836..1940
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1997..3289
                     /gene="thiC"
                     /locus_tag="ACHFOB_000961"
     CDS             1997..3289
                     /gene="thiC"
                     /locus_tag="ACHFOB_000961"
                     /EC_number="4.1.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomethylpyrimidine synthase ThiC"
                     /protein_id="HFN5799772.1"
                     /translation="MKTQMNYAKEGIFTKEMQIVAQKENLSKDFLLENIACGKIIIPA
                     NINHKSLDPNGIGFGLRTKVNVNLGVSNDCVDYSEEMKKVELAHKFGIEAIMDLSNYG
                     KTSRFRDELVNVSKAMIGTVPVYDAVGFLEKDLKQINAKDFLDVVYHHAKSGVDFMTI
                     HAGINSRAAHIFKQSKRLTNIVSRGGSVLYAWMMMKDAENPFFEYYDDLLDICLKYDV
                     TLSLGDALRPGSTHDASDGAQISELIELSLLTQRAWDVGIQVMIEGPGHMAINEIEAN
                     MQLEKRLCKGAPFYVLGPLVIDIGAGYDHISGAIGGAVAAASGADMLCYVTPAEHLRL
                     PNLEDVREGIVATKIAAHAGDIAKLPKERARDDEMSKARQEIDWEKMFKLAIDGEKAK
                     KMFNERRPDDLNSCSMCGKMCAMNTMNQILKGEDVSLA"
     gene            complement(3281..3799)
                     /locus_tag="ACHFOB_000962"
     CDS             complement(3281..3799)
                     /locus_tag="ACHFOB_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799773.1"
                     /translation="MKDKSLEEIDLLKLIICALSFISVCTALILFLLLPTLKNYKQAN
                     LRENSQLAILKAAKLKFDFSEDKISTLRSENNKSLEQFEQNFNIGNFDIFLQKYFQNV
                     KIQETKPEKQEKYLKNRLAIKATMNNPRRLYDFIDALKNYNNLIKLDYPLNLKAGEQG
                     ISIDLTLKVYSS"
     gene            complement(3789..4316)
                     /locus_tag="ACHFOB_000963"
     CDS             complement(3789..4316)
                     /locus_tag="ACHFOB_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014516703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799774.1"
                     /translation="MTYSFIQPRKKPIFTLFDKIWLGLFGFSISFILLVYFTYTIKIA
                     LINSSINNEKQQVIVLQNQTKQNEMLYEILFDQSQIAKNFNTQNQIVKESLRNLFDII
                     VKTDNITLESVEQDEYSLKLIGVTPTREMFTLLLETPLKSIFDQSYTTYYRLDNGWYR
                     FVSISKQIPGVADER"
     gene            complement(4313..5272)
                     /locus_tag="ACHFOB_000964"
     CDS             complement(4313..5272)
                     /locus_tag="ACHFOB_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="clan AA aspartic protease"
                     /protein_id="HFN5799775.1"
                     /translation="MLFLLKKIFPQLFISIILEDKKNIVKASIYRGNKLISSNEKTFD
                     KSENLLEYVKNLSKHFLFYHTALFLDAKEQGLIPSTNIQDCEHFNIGKISLQHILFNN
                     ALVYTATEHVEYYSELFEEYRGLDFLYSPFALLYYNMQKEKQPDDQILLYGFKQGHLL
                     AIIVAKGNTILYGDFKIFEQELGLELELPSEDNQEIENNNDDTEVTLDNFNEALNNKF
                     DLLDQENNLETLDNNDNFNLDELNQFSNDMELCRYIITSIEKFYNDDKYAGVFINGIL
                     LYSESDINISAIDFLESETFLEIKTKQINTLDLMIELMQKELK"
     gene            complement(5274..5903)
                     /locus_tag="ACHFOB_000965"
     CDS             complement(5274..5903)
                     /locus_tag="ACHFOB_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysophospholipid acyltransferase family protein"
                     /protein_id="HFN5799776.1"
                     /translation="MGKSFKIHCLTYIIFILQWLIFLSCKKHYKGEKVDRKAGVILFW
                     HGKLALMPFAFRHYRQKNKKAYVMISHHKDGEQIAKIIKLFGLDTVRGSTSRGASSAL
                     RAAFKVLEQNDDIVITPDGPRGPYHSISDGSIILAQKKELKIRILNYEANRFWEFKSW
                     DKMIMPKPFSRITYSLSEPLDILSLDKEKAKEFLMEQFDKISLADQFKE"
     gene            complement(5887..7188)
                     /gene="miaB"
                     /locus_tag="ACHFOB_000966"
     CDS             complement(5887..7188)
                     /gene="miaB"
                     /locus_tag="ACHFOB_000966"
                     /EC_number="2.8.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (N6-isopentenyl
                     adenosine(37)-C2)-methylthiotransferase MiaB"
                     /protein_id="HFN5799777.1"
                     /translation="MSAKKLFIQTLGCAMNVRDSEHMIAELTQKENYALTEDIKEADL
                     ILINTCSVREKPVHKLFSEVGGFEKVKKEGAKIGVCGCTASHLGNEIFKRAPYVDFVL
                     GARNISKITQAIKTPKFMGVDIDYDESEFAFADFRNSIYKSYINISIGCDKHCTYCIV
                     PHTRGDEISIPFNIIYKEAQKAIEKGAKEIFLLGQNVNNYGKRFRNEHKKMDFSDLLE
                     ELSTIEGLERIRFTSPHPLHMDDKFLEVFANNPKVCKSMHMPLQSGSSEILKAMKRGY
                     TKEWYLNRALKLRELCPNVSISTDIIVAFPGESEKDFEETVDVLEKVRFEQIFSFKYS
                     KRPLTKAATMPNQIDEEIASRRLSTLQNRHSEILDKIVKKQENKTFKVLFEELRAGNS
                     IAGRTDNNFLVQVEGSEELLGQFKEVKITNAKRMVLYGEIV"
     gene            complement(7185..7427)
                     /locus_tag="ACHFOB_000967"
     CDS             complement(7185..7427)
                     /locus_tag="ACHFOB_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HP0268 family nuclease"
                     /protein_id="HFN5799778.1"
                     /translation="MELKLARTLINEKPKNISLEKIEEAIEKEGQKFFYFDKDNTHKQ
                     LIALVNHFEKKGVSIYHRTVKYGLDDNDFMYEVHIL"
     gene            7555..8643
                     /gene="nusA"
                     /locus_tag="ACHFOB_000968"
     CDS             7555..8643
                     /gene="nusA"
                     /locus_tag="ACHFOB_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006353 - DNA-templated transcription
                     termination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor NusA"
                     /protein_id="HFN5799779.1"
                     /translation="MEKIADIIESIANEKNLNLENVREKVATALINTAKRIYGQEYEF
                     FVDPKNLNLYQKITIVADNDERLQNKSESFIALSKAKSEAPDVEIGDELTYECSLENL
                     GRTAVNTLHKELEYHIQKLLEQTIFEKYKNKVGQMVFGTVVRVDNEENTFIEIDELRA
                     FLPRKNRIKGEKFKIGDVVKAVIRRVYTDKGIKIELSRTSPKFLECLLEAEVPEIKDG
                     YVNIIGCARIPGERAKIILQANGTNIDPVGATVGVKGVRINAVSKELHNENIDCIEFT
                     NESEILISRALAPAIVNSVKIEDKKAIVSLNSEQKSKAIGKNGINIRLASMLSGYEIE
                     LNELSSSQLNNAISNEEAMKNLQDLFKI"
     gene            complement(8659..9846)
                     /locus_tag="ACHFOB_000969"
     CDS             complement(8659..9846)
                     /locus_tag="ACHFOB_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5799780.1"
                     /translation="MNYIELLKNNKNIRILASVQFIVYFGAWFSQTGVFTLLVELNAP
                     TWATATSAMLAFLPGVLLAPINGVIVEKNKPKKLLLSMISIELISIFCLIFVTSLSML
                     WLLFILIFIRLCVASIYFQAEMSLLAKILTPQELKLANEMHSVIWAISYTAGMASAGI
                     FIYFLGVKTAFLFDCILILIGISFLVRLSIPDFHQKTQSRFFTMIKEGFFYVLNNKII
                     FHLILLHAFIGLTAYETLVTLLAQHQYKEVLSAALVIGFLNAVRACSLAIGPMVLSKF
                     INDKNLFYMYLGQGLGIILWALTQFNFYISFLGLIGAGFFTSALWAYTYTMIQKNADK
                     EYHGRVIAYTDMIYLSFSAIISMLMGFLFEIGLSLELITGLLGMIFIFAAFYWKWFYK
                     KYL"
     gene            9920..10966
                     /locus_tag="ACHFOB_000970"
     CDS             9920..10966
                     /locus_tag="ACHFOB_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dehypoxanthine futalosine cyclase"
                     /protein_id="HFN5799781.1"
                     /translation="MKRLDKKEALDLLHHASLTELGEMAYKRKLELHPEKITTFVVDR
                     NINYTNVCCIDCSFCAFYRHHKEDDAYILSFEEIGKKIEELEAIGGTQILFQGGVHPK
                     LKIEWYEELVSWIKEHYPNITVHGFSAVEIAYIAKASKISITEVLKRLQAKGLFSIPG
                     AGAEVLSDRVRDIIAPNKCDTATWLEVHRQAHKIGMKSTATMMFGTVENDEEIIDHFE
                     HLRKLQDETGGFRAFILWSFQSDNTALIQKHPEIMKQSSNKYLRLLALVRLYLDNFKN
                     LQSSWVTQGSLIGQLALKFGANDLGSTMMEENVVSAAGASYRMNQDEMIRLIRSLGEN
                     PAKRNTAYEILERF"
     gene            10966..12186
                     /locus_tag="ACHFOB_000971"
     CDS             10966..12186
                     /locus_tag="ACHFOB_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M16 family metallopeptidase"
                     /protein_id="HFN5799782.1"
                     /translation="MQYLESRGIKIPFIFEKNSDFPIVVLKLVFRNCARSYDEIAGLA
                     KMFSRILNEGVDDKFFKDLEFRAINLEASSGFESLEINLSCLKENFDFALKSLEKLLL
                     KPRIEEKTLQKLKINALGELASKNSDFDYLAKNLLNAQIFKCKEFQSPNDGDEKSIET
                     LSLKDLQNFYKNFIHLSDLVVILGGDLEEKQAKEDLLKLLSKLQIGKKNTPKKYELGK
                     NIKDEILVRPESEQAYIYFATPFFADFKDKDLYLAKIALFVLGQGGFGSRIMEEIRVK
                     RGLAYSAYAMLDMNMSFSRVFGYLQTKNESAKEAKKIVKELFEDFIKNGMTQNELDQA
                     KNFLIGSTPLRYESLSKRLSMSFNEFYQGLNLGYYKEELKLMEKVKLETINAYIKKHQ
                     ELLNISFASIQNEN"
     gene            12176..>12627
                     /locus_tag="ACHFOB_000972"
     CDS             12176..>12627
                     /locus_tag="ACHFOB_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFN5799783.1"
                     /translation="MKIKESDFEFFKKLKIRSAIDLALLLPKKIENLNPSKNPKENEI
                     CTQKITIKSVSSRKNQLFGLGFCEEWQENISFVFFHPRAWHFGICKVGKELIFNAKLS
                     HFNHTWQFNNPKILTSFEGFSPKYQILGLKDTKIAAFIHKYLNYVNLK"
BASE COUNT         4447 a         1708 c         2091 g         4381 t
ORIGIN      
        1 tgtgttatat aagtgattta ttaaagttta tttttaaatt ggaaatttta aaattgagga
       61 ataaatcctc aaaattattt agaattttgt ttttttagag ttcttagagt agaagctgcg
      121 attctcattt ttctcgtggt gccatcttct aaagttacac gaactgttct gagattaggt
      181 aaaaagcgtc tttttgtttt attgttagca tggctgacat tattacccac cattggaccc
      241 ttgcctgtga tttgacatac tcttgccatt ttcttgtcct tatgaaaatt tttaaatgga
      301 gattttatca aaattaagct taaaatattc cataatttat agttttttta atatataagt
      361 cgataaaata ttatttatca catttatata tagtttaagg ttttgatcat gtatgtagct
      421 ccaagtttat tgtctgcaaa ttttttaaaa ttagaagaag aagttaaagc tattgaagct
      481 gcaggtgcag atcttttaca tattgatgta atggatggac actttgttcc aaatttgact
      541 tttggacctt gcgtgatcga aaaaatttca actattagta agttgccatt agatgtgcat
      601 ttgatggtta aagatgtaag taaatttata gatcttttta tccctttgaa accaaaattt
      661 atttcttttc atatagaaag cgaagttcat cctataagac tttgtgaata tataagaagt
      721 caaggaatcc atcctgctat tgttttaaat ccacacactt ctattgattc tattaaacac
      781 atgctagaat ttgtagatat ggtactttta atgagtgtta atcctggatt tggtggacaa
      841 aaatttttac ctttggtaca tgaaaaaatc aaagaattgc gccaaatgat tgataaaaaa
      901 aatgctaaag tttttataga ggttgatggt ggtgttaatg gtttaaatgc tagcgattta
      961 gaagaatccg gagctgatat tttggtggct ggaagttata ttttttcttc taatgattat
     1021 aaaactgcaa tttcatcttt aaagcttgaa ttttgagttt acagcaaatt gatcagatta
     1081 tttctatatt aaataagcaa agcaagcctt atgattgggt gatgcaagag tttgccaaag
     1141 ttgaagaatt aaaaaatttt gatttagatt tggaaacttt tgagcttttg ggtttgggtt
     1201 taactttgaa taaagataat atttttaccc ttaaaacacg cacaacaaaa attaaagatg
     1261 aaattttttg catagtagat atagaaagta ctggtggtgt aagtaagggg gaaattttag
     1321 aaattggagc agtaaaaatt caaaattcta aagaaattgc acgctttcaa agttttgtta
     1381 aagtaaaaga aattccagaa aatataaccg aacttacggg tattacttat gagatggtgg
     1441 aaaatgctcc aagtttagca aaggttttaa gtgattttag gcttttttta aaagacagta
     1501 tttttgtagc gcataatgtg cgttttgatt atagttttat ttctagggct ttaaatgagt
     1561 gtggttttgg cattttgctt aatcgtcgta tttgcactat agaatttgca caatgttgta
     1621 tagaaagtcc aaaatataaa ctagaggttt tgaaagaatt tctgggcgtg gaaaatacgc
     1681 atcatagggc cttagatgat gctttagcag ctgctgaaat ttttaaatat tgccttggaa
     1741 aacttcctta tcatataaaa actacagaag aacttataaa ttttacaaag actgcacgca
     1801 taaagcaaaa ataaatattt aaagtgtata attaaaacat aaatgacggg agcttgtgta
     1861 acaggctgag agtaagctaa aagcttagac cgaaccggat ctggataata ccagcgtcgg
     1921 gaagatttat aaatttcaat actttaaaaa tttatactca cccttcattt atccaaattt
     1981 tttaaaggat aaatttatga aaactcaaat gaattatgcc aaagaaggta tttttactaa
     2041 agaaatgcag attgttgcgc aaaaagaaaa tttaagtaaa gattttttgc ttgaaaatat
     2101 tgcttgcggt aaaattatta tccctgcaaa tattaatcat aaaagtcttg atccaaatgg
     2161 tataggtttt ggactgcgta ctaaggttaa tgtaaattta ggagtttcaa atgattgcgt
     2221 tgattatagc gaggaaatga aaaaagtaga gcttgctcat aaatttggca tagaagcgat
     2281 tatggactta agcaattatg gcaaaacaag tcgttttaga gacgagcttg ttaatgtttc
     2341 aaaagctatg ataggaacag ttcctgtata tgatgcggta ggatttttag aaaaagattt
     2401 aaagcaaatt aatgccaaag actttttaga tgttgtatat catcatgcta aaagtggggt
     2461 tgattttatg acaattcatg caggtattaa ttctcgcgca gcgcatattt ttaaacaaag
     2521 taaaagactt acaaatatag tttcaagagg aggctctgta ctttatgctt ggatgatgat
     2581 gaaagatgct gaaaatcctt tttttgagta ttatgatgat ttgcttgaca tttgtttaaa
     2641 atatgatgta actttatctt tgggcgatgc tttgcgtcct ggctctactc acgatgcaag
     2701 tgatggggca caaatttcag aacttataga attatcactc cttactcaaa gggcttggga
     2761 tgttgggatt caagtaatga tagaaggtcc agggcatatg gctattaatg aaatagaggc
     2821 aaatatgcaa ttagaaaagc gtttatgtaa aggagcgcct ttttatgtct taggaccttt
     2881 ggtaatagat attggcgcag ggtatgatca tattagtggt gctattggag gagctgtggc
     2941 tgcagctagc ggtgctgata tgctgtgtta tgtaacacct gctgaacact taagacttcc
     3001 aaatttagaa gatgttagag agggtatagt tgcgactaaa attgcagctc atgcaggaga
     3061 tatagctaaa cttccaaaag aaagagcaag agatgatgag atgagtaagg ctaggcaaga
     3121 gatagattgg gagaaaatgt ttaaacttgc tattgatgga gaaaaggcca aaaaaatgtt
     3181 taatgagcgt cgtcctgatg atttaaactc atgttctatg tgtggaaaaa tgtgtgcaat
     3241 gaatactatg aatcaaattt taaaaggcga agatgtgagt ttagcttgaa taaactttga
     3301 gagtaagatc tatagagata ccttgctctc ctgctttaag attaagtgga taatcaagct
     3361 tgattaagtt attatagttt tttagagcat caataaaatc ataaagcctt ctaggattgt
     3421 tcattgtcgc tttaatggct aagcggtttt ttagatattt ttcttgtttt tcgggcttag
     3481 tttcttgaat ttttacattt tgaaaatatt tttgtaaaaa aatatcaaaa tttcctatat
     3541 taaaattttg ctcaaattgc tctaaacttt tgttgttttc gcttcttaga gttgatattt
     3601 tatcttcact aaagtcaaat tttaatttag cggcctttaa gatagcaagt tgtgagtttt
     3661 ctctaagatt tgcttgttta taatttttta atgtcggtaa aagtaaaaat aagatcaagg
     3721 ctgtgcaaac gcttataaaa cttaacgcgc aaatgataag ctttaataaa tcaatttctt
     3781 ctagactttt atctttcatc tgcaactcct ggaatttgtt tactaatact aacaaaacga
     3841 taccacccat tatctaagcg ataataggtt gtatagcttt gatcaaagat gctttttaaa
     3901 ggggtttcta aaagtagagt aaacatttct cttgtaggag tgactccgat aagctttaag
     3961 gaatattcgt cttgttcaac actttcaaga gtaatgttat cagtttttac aataatatca
     4021 aatagatttc ttaagctttc tttaacaatt tgattttgag tgttaaaatt tttcgctatt
     4081 tggctttgat caaataaaat ttcataaagc atttcatttt gcttagtttg attttgaagc
     4141 actataactt gttgtttttc attattgata gagctattga ttaatgcaat ttttattgta
     4201 tatgtaaaat atactagcaa gataaatgat atactaaaac caaaaagtcc tagccaaatt
     4261 ttatcaaaga gtgtgaaaat aggctttttt cttggttgta tgaagctata agtcatttaa
     4321 gctccttttg catcaattct atcataagat ctaaggtgtt gatttgtttg gtttttatct
     4381 ctaaaaaagt ttcactttct aaaaaatcaa tagcacttat gttaatatct gattcgctat
     4441 ataataaaat accattgata aataccccag catatttatc atcattataa aatttttcaa
     4501 tgctcgtaat aatataacgg caaagttcca tatcattgct aaattgattt aattcatcaa
     4561 gattaaaatt atcattatta tccaaagttt caagattatt ttcttgatca agtagatcaa
     4621 atttattatt taaggcttca ttgaagttat ctaaggtaac ttcagtatca tcgttgttgt
     4681 tttcaatttc ttgattatct tccgatggaa gttcaagctc taaacctaat tcttgctcaa
     4741 atattttaaa atcaccgtat aaaatagtat tgcctttagc aacaataatt gccaaaagat
     4801 gtccttgctt aaatccataa agtaaaattt gatcatcagg ctgtttttct ttttgcatat
     4861 tgtagtaaag aagagcaaaa ggggaatata aaaaatctaa acctctatat tcttcaaaaa
     4921 gctcgctata atattctaca tgttcggtag ccgtataaac aagggcatta ttaaacaaaa
     4981 tatgctgtaa gctgattttt cctatattaa agtgctcaca atcttgaata tttgtactag
     5041 gtattaatcc ttgttctttg gcatctaaaa ataaagcagt gtggtaaaat aagaaatgct
     5101 tgcttaaatt ttttacgtat tctaataaat tttcgctttt atcaaaagtt ttttcattgc
     5161 tactgattag tttatttcct ctataaatag aagcttttac aatatttttt ttatcttcta
     5221 aaataatact aataaaaagt tgtggaaata tttttttaag taaaaataac atttcattcc
     5281 ttaaattgat cagctaagct aattttatca aattgttcca ttagaaattc tttagctttt
     5341 tctttatcta aagataaaat atccaaaggt tcacttagac tataagtaat cctactaaaa
     5401 ggttttggca tgatcatctt atcccaactt ttaaattccc aaaaacgatt tgcttcatag
     5461 tttaaaattc ttatctttag ttcttttttt tgagccaaaa tgatagaccc atctgaaata
     5521 ctatgataag gccctcgtgg accatcgggc gtgataacta tatcgtcatt ttgttctaaa
     5581 actttaaatg cagctctaag tgcactgcta gcaccccttg aagtgcttcc tcttacagta
     5641 tcaagaccga aaagcttgat gatttttgca atttgctctc catctttatg gtgagagatc
     5701 atgacatagg cttttttatt tttttgccta taatgtctaa acgcaaaagg cataagtgct
     5761 aattttccat gccaaaaaag tatcacacca gctttacggt caactttttc acctttatag
     5821 tgctttttac agcttaaaaa aataagccat tgcaagatga aaattatata tgttaagcaa
     5881 tggattttaa acgatttccc catataaaac catacgcttt gcattagtta tttttacttc
     5941 tttaaattgc cctaaaagtt cttcgctacc ttcaacttga actaaaaagt tattatctgt
     6001 tcttccagca atgctattgc ctgctcttaa ttcttcaaat aaaactttaa aagttttatt
     6061 ttcttgtttt tttacaattt tatctaaaat ttcactatga cgattttgta aggtgctaag
     6121 tcttcttgaa gctatttctt catcgatttg attaggcatg gttgcggctt ttgttaaagg
     6181 gcgtttggag tatttaaaag aaaaaatttg ttcaaaacgc actttttcca aaacatctac
     6241 agtctcttca aaatcttttt cactttcccc tggaaaagct acaataatgt ctgtagaaat
     6301 gctaacattt ggacaaagtt ctctaagttt taaagctcta tttaaatacc attctttagt
     6361 atagccacgc ttcatagctt ttaaaatttc acttgagccg ctttgtaaag gcatatgcat
     6421 ggatttgcaa acttttggat tattggcaaa aacttctaaa aatttatcat ccatgtgcaa
     6481 aggatgtgga cttgtaaagc gaatgcgttc caaaccttct atagtgctaa gttcttctaa
     6541 aagatctgaa aagtccattt ttttatgttc gtttctaaat cttttgccat agttattgac
     6601 attttgtcct agcaagaaaa tctctttagc gcctttttca atagcttttt gagcttcttt
     6661 gtagatgatg ttaaaaggta tggaaatttc atctcctcta gtatgtggca ctatacaata
     6721 agtgcagtgt ttatcacaac ctatggagat attaatatag gatttataaa tactatttct
     6781 aaaatctgca aaagcaaatt cactttcatc atagtctata tccacgccca taaattttgg
     6841 agtttttata gcttgagtga ttttggaaat atttcttgcc cctagaacaa aatccacata
     6901 aggagcacgt ttgaaaattt catttcccaa atgtgatgca gtgcatccac aaactcctat
     6961 tttagcacct tcttttttaa ctttttcaaa gccacccact tctgagaaaa gtttatgcac
     7021 aggtttttca cgcactgaac aggtattaat aagaataaga tctgcttctt tgatatcttc
     7081 tgttagtgcg taattttctt tttgtgttaa ttctgcgatc atatgctcag aatctctgac
     7141 attcatcgca caacctaaag tttggataaa aagtttttta gcactcaaag aatatgtacc
     7201 tcatacataa aatcattatc atcaagtccg tattttacgg ttctatgata aatgcttact
     7261 cctttttttt caaaatgatt tacaagggca atgagttgtt tgtgtgtatt atctttatca
     7321 aaataaaaaa acttttgtcc ttctttttct atagcctctt cgattttttc taggctaata
     7381 tttttaggtt tttcattaat caaagttctt gccaatttta attccatagc taaatcctta
     7441 agaattttca ttttaatcta taattttagc aaattttact tttaattaaa cttattaagg
     7501 atataatttt tatctacatt atttaaattt cccacaaaaa aggttttata aaatatggaa
     7561 aagatagcag atattatcga atctattgct aatgaaaaaa atttaaactt agagaatgta
     7621 agagaaaagg tagctaccgc tttaatcaat actgcaaaaa gaatttatgg acaagaatat
     7681 gagttttttg tggatcctaa aaatttaaat ctttatcaaa aaattaccat agtagcagat
     7741 aatgacgaga gattgcaaaa taaaagtgag agttttatcg cgttaagtaa ggcaaaatca
     7801 gaagctccag atgttgaaat aggagatgaa ttaacctatg aatgttcttt ggaaaattta
     7861 ggaagaactg cggtaaatac cttgcataaa gaacttgaat atcatataca aaaattatta
     7921 gaacaaacta tttttgaaaa gtataaaaac aaagtagggc aaatggtttt tggtacagtt
     7981 gttagagtgg ataatgaaga aaatactttt attgaaatag atgaattaag agctttttta
     8041 ccgagaaaaa atcgcattaa aggggaaaag tttaaaatag gtgatgtggt aaaagctgtg
     8101 atacgccgtg tttatacaga taagggtatt aaaatcgagc ttagtcgtac aagtcctaaa
     8161 tttttagaat gtttacttga agctgaggtt ccagaaatca aagatggtta tgtcaatatt
     8221 ataggatgtg ctagaattcc aggtgaaaga gcaaaaatca ttcttcaggc caatggaaca
     8281 aatatcgatc ctgtaggagc tacagtaggt gttaaaggtg taagaattaa tgcggtaagc
     8341 aaagagcttc ataatgaaaa tattgattgt atagaattta caaatgagag tgaaatttta
     8401 atttctcgtg ccttggctcc tgctattgta aattctgtaa aaattgaaga taaaaaagct
     8461 attgtaagtt taaatagcga acaaaaaagc aaagctatag gaaaaaatgg tattaatatt
     8521 cgccttgctt ctatgttaag tggttatgaa atagagctca atgaattaag ctcatcgcag
     8581 ctaaataatg ccatcagcaa tgaagaagca atgaaaaatc ttcaagattt gtttaaaatt
     8641 taaaatattt gtgaattttc acaaatattt tttataaaac cacttccaat aaaatgccgc
     8701 aaagataaaa atcataccca ataagcctgt aattagttct aaactcaagc ctatttcaaa
     8761 taaaaagccc ataagcattg aaataatagc gctaaaacta agataaatca tatctgtata
     8821 agcgatcact ctaccatgat attctttgtc ggcatttttt tgtatcatag tgtaggtgta
     8881 agcccaaagc gctgaggtaa aaaaacctgc accgattaaa cctaaaaaag aaatataaaa
     8941 attaaattga gttaaagccc aaagtataat acccaagcct tgaccaagat acatgtaaaa
     9001 taaattttta tcattaataa atttgcttaa aaccataggt cctatagcta aagaacaagc
     9061 acgtactgca tttaaaaacc ctattactaa agcagcagat aaaacttctt tatattgatg
     9121 ttgcgctaaa agcgtaacca aggtttcata agcagttaaa cctataaaag cgtgaagcaa
     9181 gataagatga aaaattatct tattgtttaa aacatagaaa aatccttctt ttatcatggt
     9241 aaaaaagcga ctttgtgttt tttgatgaaa atcaggaatg cttaatctta ctaaaaaaga
     9301 aatgcctatg agtataagta tacagtcaaa tagaaaagcg gttttaactc ctagaaaata
     9361 aataaaaatt cccgcacttg ccatacctgc tgtataagaa atcgcccaaa tgacactgtg
     9421 catttcatta gcgagtttaa gttcttgagg agttaaaatt ttggccaata aactcatttc
     9481 agcttgaaaa taaatcgaag caacacaaag tcttatgaaa attaaaataa ataaaagcca
     9541 aagcatacta agacttgtga caaaaataag acaaaaaata gaaattaatt ctatgctaat
     9601 catactgagt aaaagttttt taggtttatt tttctctact atgacgccat taataggagc
     9661 aagtaaaact ccaggtaaaa aagcaagcat agcacttgta gctgttgccc aagtaggagc
     9721 attaagttcg actaaaaggg taaaaactcc cgtttgagaa aaccatgctc caaaatatac
     9781 tataaactga accgaagcta atattctgat atttttatta ttttttaata gttcaatgta
     9841 attcataagc gaaactatag cataatttat attttaaatg ctataattat tttaattatg
     9901 taaaaaacaa ggaaaaattt tgaaaagact ggataaaaaa gaagctttag atttattaca
     9961 ccatgcaagt ttaacagaac ttggagaaat ggcttataaa agaaaattag aacttcatcc
    10021 tgaaaaaatc accacttttg ttgtggatag aaatattaat tataccaatg tttgttgtat
    10081 tgattgttct ttttgcgctt tttatcgcca tcataaagaa gatgatgctt atattttaag
    10141 ctttgaagag ataggcaaaa agatagaaga gcttgaagct atcgggggaa cacaaattct
    10201 ttttcaaggc ggggtgcatc caaaattaaa aatagaatgg tatgaagaat tagtttcttg
    10261 gataaaagaa cattatccaa atatcactgt gcatggtttt tcagcagttg agatcgctta
    10321 tattgcaaaa gcatctaaaa tttcaatcac tgaagtgtta aaaagattgc aagctaaagg
    10381 tttattttct ataccaggag caggtgctga ggtgctaagc gatagggtgc gtgatattat
    10441 cgcaccaaat aaatgtgata cagctacttg gttagaagta catcgccaag ctcataaaat
    10501 tggtatgaaa agtacagcta ctatgatgtt tggaacggtt gaaaatgatg aagaaatcat
    10561 cgatcatttt gagcatttga gaaaattaca agatgaaaca gggggattta gagcttttat
    10621 tttatggagc tttcaaagtg ataatactgc tttaatccaa aaacatccag agattatgaa
    10681 acaaagttct aacaaatatt taagactttt agctttagta agactttatt tagataattt
    10741 taaaaattta caaagttctt gggtaactca aggctcactt ataggccagc ttgctttaaa
    10801 atttggggcc aatgatttag gctcaactat gatggaagaa aatgtagtaa gtgctgcagg
    10861 agcaagttat agaatgaatc aagatgagat gataaggctg attagaagtt taggcgaaaa
    10921 tccagctaaa cgcaataccg cttatgaaat tttagaaagg ttttaatgca gtatttagag
    10981 agtaggggta ttaaaatccc ttttattttt gaaaaaaatt ctgattttcc tattgttgtt
    11041 ttaaagcttg tttttagaaa ttgtgctaga agttatgatg aaatagcagg cttagctaag
    11101 atgttttcac gtattttaaa tgaaggcgtg gatgataaat tttttaagga tttagaattt
    11161 agagcgataa atttagaggc aagtagtggt tttgaaagtt tggaaatcaa tctttcttgc
    11221 ttgaaagaaa attttgattt tgctttaaag agtttagaaa aattgctttt aaaaccaaga
    11281 atagaagaaa aaactttgca aaaattaaaa atcaatgcct taggtgagct cgcgagtaaa
    11341 aatagtgatt ttgattattt agcaaaaaat ttactcaatg ctcaaatttt taaatgtaaa
    11401 gaatttcaaa gtccaaatga tggagatgaa aaaagtatag aaactttgtc tttaaaagat
    11461 ttgcaaaatt tttataaaaa ttttatccat cttagtgatt tggttgtgat tttaggagga
    11521 gatttagaag aaaaacaagc caaggaagat cttttaaaac tcttatcaaa acttcaaata
    11581 ggcaaaaaaa atactccaaa aaaatatgag ttaggcaaaa acatcaaaga tgaaattttg
    11641 gtacgcccag aaagtgaaca agcttatatt tattttgcta cgcctttttt tgctgatttt
    11701 aaagataagg atttatatct tgcaaaaatt gccttatttg tgctagggca aggaggattt
    11761 ggttcaagga ttatggaaga aattcgtgtt aaaagaggtc ttgcatactc agcttatgct
    11821 atgcttgata tgaatatgtc tttttctaga gtttttggat atttacaaac taaaaatgaa
    11881 agcgctaaag aagctaaaaa aatcgtaaaa gagctttttg aagattttat aaaaaatggc
    11941 atgactcaaa atgaacttga tcaagctaaa aattttctca taggatcaac tcctttgcgt
    12001 tatgaaagct taagcaagcg tttatctatg tcttttaacg aattttatca aggtttaaat
    12061 ttgggatatt ataaagaaga gttaaaactt atggaaaagg ttaaacttga aaccataaat
    12121 gcttatatta aaaaacatca agagctttta aatataagtt ttgcaagcat acaaaatgaa
    12181 aattaaagaa agtgattttg aattttttaa aaaattaaaa attagaagtg ctattgattt
    12241 agcgcttctt ttacctaaaa aaattgaaaa tttaaatcca agtaaaaatc ctaaagaaaa
    12301 tgaaatttgt acccaaaaaa tcactataaa aagcgttagt tcaagaaaaa atcaactttt
    12361 tggtttaggt ttttgtgagg aatggcaaga aaatatttct tttgtgtttt ttcatcctag
    12421 agcttggcat tttggtattt gtaaggtagg aaaagagctt atttttaatg ctaaactctc
    12481 gcattttaat cacacttggc aatttaacaa tcctaaaatt ttaacttctt ttgagggttt
    12541 tagtccaaag tatcaaattt taggtttaaa agatacaaaa attgctgctt ttatacataa
    12601 atatcttaat tatgtaaatt taaaaga
//
LOCUS       DAZBIH010000042        12548 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.042, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000042 DAZBIH010000000
VERSION     DAZBIH010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12548
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.042"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..192)
                     /locus_tag="ACHFOB_000973"
     CDS             complement(<1..192)
                     /locus_tag="ACHFOB_000973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799784.1"
                     /translation="MIRNFFIGMSFLGILFLAFYALYDKKKESVFSLNTCQPLTCNLN
                     LQDCVFSFNKKNIEVSAYPK"
     gene            350..1327
                     /locus_tag="ACHFOB_000974"
     CDS             350..1327
                     /locus_tag="ACHFOB_000974"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0071555 - cell wall organization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="murein L,D-transpeptidase family protein"
                     /protein_id="HFN5799785.1"
                     /translation="MLKRLALLITLSSLMLHASDLVKIYLNQGLDAVGVAIEKELTQK
                     DFWLSEIGDKNISLGYYDDNVAIVLTNKTDKILRVYSYEDGKIRKDFEQKEIITGLMG
                     DKKIEGDLKTPVGFYELGRKFNPGDPYYGPFAFATTYPNLLDKVQGKTGGGIWIHGYP
                     LDGSRLDEFKTRGCIALFNNNLEKFAQVVQDKKVFVMTEEKEKIRAKKDQIASLLADL
                     FTWKLAWTNSDTNTYLSFYDEQEFKRFDKMKFEQFASMKKSIFSRKEDKKIKFSDINI
                     SPYPNLENETMYRISFYEDYYTKNYQFRGDKILYVKIDSKGKMKILAEQ"
     gene            1328..2314
                     /locus_tag="ACHFOB_000975"
     CDS             1328..2314
                     /locus_tag="ACHFOB_000975"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HFN5799786.1"
                     /translation="MSLIKIDQKAYEYNLRHIAKKIGSFQRLICVFKDNAYGHGAKLL
                     APLAKNLGVSFVAVKSEEEAQEIEEFFENILILSHRPHGNENSRFIYALNDISQVKKY
                     KQDIKIHLKIDTGMHRNGICVENLEHAIDLIRSSDLKLTGMFTHFASADEMDGSFFVQ
                     KENFQKAKKIVKKYFSNLLFHSHNSAALFRGKIPEDEYCRVGLVQFGYGDSNLKKVLS
                     LYAHRLSQRILQKGQSIGYGGIFTAAKDMEVATYDLGYADGLFRYNGKGELVLGNGKV
                     MLGKMSMDSFSCENSGEEICVFKDADIWADFFHTINYEILVKLNPNIQRVLV"
     gene            2317..2784
                     /locus_tag="ACHFOB_000976"
     CDS             2317..2784
                     /locus_tag="ACHFOB_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(34)-2'-O)-methyltransferase"
                     /protein_id="HFN5799787.1"
                     /translation="MFNIVLVHPRIPQNTGSIGRMCFNAGFKLHIVKPTVFDISQKAV
                     RRAGLDYWDKLEPIIWENLEEFLNENMIYKNRFFFATTKSQKAYFDAKFQKNDFLFFG
                     SESYGLPMELMQLNWENAITIPMKSYGRSLNLATSVGIISYEALRQNFSNFVS"
     gene            2888..4354
                     /locus_tag="ACHFOB_000977"
     CDS             2888..4354
                     /locus_tag="ACHFOB_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0005283 - amino acid:sodium symporter
                     activity [Evidence IEA];
                     GO_function: GO:0015293 - symporter activity [Evidence
                     IEA];
                     GO_process: GO:0006814 - sodium ion transport [Evidence
                     IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine/glycine:cation symporter family protein"
                     /protein_id="HFN5799788.1"
                     /translation="MNLDIMLDFANKASDIIANKIVPNTDIIMVVLLIVCGLYYSFLT
                     RFVQFRMLSSVFKILTEKNEGHTKEHISPFQALMISTASRVGIGNIAGISLALATGGA
                     GALFWMWVMAFFGGASAFAESTLAQVYKSKDDTGGFKGGPAYYIKKALGSHFFGAFFA
                     FILIITYAYGFNGLQSQTMTSSFKVYYDMFNPNAAVDFASSSWPMIIGIVLTIFGAWM
                     FFSHHTKIGKISSLIVPFMALAYVLLAVIAVLMNFDKIPSVVHMILQSAFDFKAIFGG
                     FAGSALVIGIKRGLFSNEAGMGSAPNAAAAALTSHPAKQGVIQAFSVLIDVVVCTSSG
                     FLVLFSMAYLGLGESKIDGGMPLVQEAMREYYGSFGIHFITIAIVLFAITSLIGNYYY
                     AQANVKYLTNSKFAMNLFRITAVAMIFIGSQMNLKLAWNLADLTMAFMATTNIISLLL
                     LGGIVNKVLKDFNTQQKSGIDPKFNASKLGIKNAECWD"
     gene            complement(4382..5110)
                     /locus_tag="ACHFOB_000978"
     CDS             complement(4382..5110)
                     /locus_tag="ACHFOB_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFN5799789.1"
                     /translation="MIEVKNLQKKYGELEVLKNINTTISKGDVIAIIGPSGGGKSTFL
                     RCINRLELADSGEILINKQNILDKEIDINKIRQKVSMVFQHFNLFANKNVMENLCLTP
                     IKTGILSQEEAIKKAKILLAKVGLADKENIMPHKLSGGQKQRIAIARSLMMNPDVILF
                     DEPTSALDPEMIGEVLSIMKDVAKEGLTMLVVTHEMGFARNIANRIFFMDKGKIAVDA
                     SPKEVFENLSNERLREFLNKVLNH"
     gene            complement(5103..5846)
                     /locus_tag="ACHFOB_000979"
     CDS             complement(5103..5846)
                     /locus_tag="ACHFOB_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5799790.1"
                     /translation="MNQKNIRIFVFFVIIILWGYFSFPIEILKIQDPSGVVSYGYTEN
                     AKAYLKSYLITLLLTACAVIIGVIIGFSLAILRFSKFKTLNFIIDEYIDIIRGTPVIL
                     QLMIFAFVIFTFIDNLYAAILALGLNSSAYIAEIVRSGINSVDKGQMEAARAMGLDYK
                     TSMKEIILPQATKNILPALANEFISLFKETSVVGFISVIDITMQSQSLQAVLYNPKPI
                     IFTGLVYYVSVKIFSYFAKKLELRMNKND"
     gene            5929..6108
                     /locus_tag="ACHFOB_000980"
     CDS             5929..6108
                     /locus_tag="ACHFOB_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799791.1"
                     /translation="MLEFPKNKVVFMEILDFILIVIFVFLMIVLVIGFNRQMMQKNKE
                     REERFKKYKKGEQNE"
     gene            6101..6670
                     /locus_tag="ACHFOB_000981"
     CDS             6101..6670
                     /locus_tag="ACHFOB_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DJ-1 family glyoxalase III"
                     /protein_id="HFN5799792.1"
                     /translation="MSKKVLIPLAQGFEEAEFIGIADVLKRARELNPDLEVVIASLNS
                     ELLVKGANGISIKADCSIEDVDIENLDAIALAGGFEGMMNLKNSNVILNIIKQLHSKN
                     KIVAAICASPIVLNEAGVLEGEFACYPSCEVGLNGNRVNKAVVVNKNVITSAGPATAI
                     LFGLELAKKLCGDEIYQKLYEGMLLPLTK"
     gene            complement(6700..7065)
                     /locus_tag="ACHFOB_000982"
     CDS             complement(6700..7065)
                     /locus_tag="ACHFOB_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine triad nucleotide-binding protein"
                     /protein_id="HFN5799793.1"
                     /translation="MQEKTIFELIVEGKLPCNKVLESDDFLAFHDIAPKAPIHILIIP
                     KKHFKDFQEFDPELMAKMTSFIQELAVLLGVDKSGYRLVTNCGKNSGQEVFHLHFHML
                     GGFELPKEKTKKENPQALF"
     gene            7188..8180
                     /gene="pheS"
                     /locus_tag="ACHFOB_000983"
     CDS             7188..8180
                     /gene="pheS"
                     /locus_tag="ACHFOB_000983"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HFN5799794.1"
                     /translation="MQNFIEQIQKCENLNDLEAIRISVLGKKGILTEGFTKLKELEDE
                     AKKEFAAKLNAQKEIFNEAYLAKFKDLENLALEERMKQDALNFNYFDESITTGALHPV
                     MSTMDKIIEYFIALNFSIEKGPLIEDDFHNFEALNLPKSHPARDMQDTFYFDDKRLLR
                     TQTSPVQIRTMLAQKPPIRMIAPGAVFRRDFDITHTPMFHQVEGLVVEEGQKVSFANL
                     KSVLEDFLRYMFGDVKVRFRPSFFPFTEPSAEVDISCVFCKGKGCRVCKHTGWLEVLG
                     CGIVDPNVYNFVGYENVSGYAFGLGVERFAMLLHQIPDLRSLFEGDLRLLEQFR"
     gene            8177..10498
                     /gene="pheT"
                     /locus_tag="ACHFOB_000984"
     CDS             8177..10498
                     /gene="pheT"
                     /locus_tag="ACHFOB_000984"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HFN5799795.1"
                     /translation="MIITKSWLNDWLELEEISSDKIAKTLNSIGIEVDRVGALKAPDK
                     VVVGYVKEKIKHENSDKLSICQVDIGSEILQIVCGAANVDAGQFVTVATKGAIMPNGM
                     EIKEAKLRGVDSCGMLCSSLELGFEKINEGIMLLDESIGKLELGRPLNTYEIFNDELI
                     EVELTPNRGDCLSIYGIARDLAAALNLNLKEPKPFKESENVLGIGRILRLAAEKELNG
                     LYNYRAIGLKEEIQTNLLLSLRLAQIEGLGKNSIENLLNYATHSTGVLFNAYDLSSFS
                     EKDEEFTINLSKQVHGETKVSYKDKLLSFSGIFQNNESRCKDDSKIIIIEANYTDPLV
                     IADAKIYHKDQDEKMLYRSFRGSEPKLNLGMDFLLGIFEQIPNLVIYSSSQQILTDKE
                     LPIIPISIEGISDIIGQNVDKDEVLKILKKLGFELILSGEGLINVKAPLHRPDIKNLS
                     DICEEVVRIIGIDNIASKGLEFIEKNRLNSAYKNYIEFLNLRKRAVASGYFESLHYVL
                     DNGEELKRLGFDSVKLKLINPITAELNTLRTTLLNHLLNAASLNAKNSKKIIKLFELG
                     AVFNVNNQELNRIAFIHSGLKEEAKISNKAKPESVQFYDFLLDIKNIIGDFKLKSSKY
                     NILSPYEQADIYLSDIKVGFIGRLHLKIENERDLPKTYICELDLDLIRQDFKIAKPYS
                     KFPAITRDLSVLIPKGFEYNQIKNCIEELNLEILENFRLVDIYSDENLKEFYSITISF
                     SFRDINKTLEDNQVNECMDKILNTLKNLGLDLR"
     gene            10495..11781
                     /gene="aroA"
                     /locus_tag="ACHFOB_000985"
     CDS             10495..11781
                     /gene="aroA"
                     /locus_tag="ACHFOB_000985"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003866 - 3-phosphoshikimate
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HFN5799796.1"
                     /translation="MKIYKLQTPVNAILENIAADKSISHRFAIFSLLTQEENKAQNYL
                     LAQDTLNTLEIIKNLGAKIEQKDSCVKIIPPKEILSPNCILDCGNSGTAMRLMIGFLA
                     GISGFFVLSGDKYLNNRPMRRISKPLTQIGARIYGRNEANLAPLCIEGQKLKAFNFKS
                     EISSAQVKTAMILSAFRADNVCTFSEISLSRNHSENMLKAMKAPIRVSNDGLSLEINP
                     LKKPLKAQNIIIPNDPSSAFYFVLAAIILPKSQIILKNILLNPTRIEAYKILQKMGAK
                     LEMTITQNDFETIGEIRVESSKLNGIEVKDNIAWLIDEAPALAIAFALAKGKSSLINA
                     KELRVKESDRIAVMVENLKLCGVEARELDDGFEIEGGCELKSSKIKSYGDHRIAMSFA
                     ILGLLCGIEIDDSDCIKTSFPNFIEILSNLGARIDY"
     gene            11771..>12548
                     /locus_tag="ACHFOB_000986"
     CDS             11771..>12548
                     /locus_tag="ACHFOB_000986"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051745 - 4-hydroxy-3-methylbut-2-enyl
                     diphosphate reductase activity [Evidence IEA];
                     GO_process: GO:0019288 - isopentenyl diphosphate
                     biosynthetic process, methylerythritol 4-phosphate pathway
                     [Evidence IEA];
                     GO_process: GO:0050992 - dimethylallyl diphosphate
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HFN5799797.1"
                     /translation="MIIELAKNYGFCFGVKRAIKKAEQIKDAATIGPLIHNNEEISRL
                     QKNFNVKTLENIQALSNEKKAIIRTHGITKQDLEELRKKDIEIFDATCPFVTKPQQIC
                     EQMSKEGYEVVIFGDENHPEVKGVKSYVSTKAYVVLDKKELQNIKLPNKIAVVSQTTK
                     KPEHFMEIVNFLILKTKEVRVFNTICDATFKNQDAIKELSLKSDVMVVVGGKNSANTK
                     QLFLIAKTNCEDSYLIETEEELKKEWFLDKKHCGISAGAST"
BASE COUNT         4454 a         1543 c         2168 g         4383 t
ORIGIN      
        1 ttttgggtag gctgaaactt caatattttt tttattaaaa gaaaaaacac aatcttgtaa
       61 atttaagtta caagttagag gttggcatgt atttaagcta aatacacttt ctttcttttt
      121 atcatataat gcataaaaag ctaaaaacaa aatgcctaaa aaagacattc ctataaaaaa
      181 atttcttatc attatagaca accttttaaa acaagccttt atgatttata aaaaattata
      241 tcataaataa ggccgcattg ttaatataat taatattttt taagaaaaaa aatattataa
      301 tcacaaacat ttttgactta aaaaattttg aaatacctaa ggaaaaacat tgttaaaacg
      361 acttgcttta ttaattacac tttcttcatt gatgttgcat gcctcagatc ttgttaaaat
      421 ttatcttaat caaggattag atgctgttgg tgtagcgatt gaaaaagaat taactcaaaa
      481 ggatttttgg ttaagtgaaa taggagataa aaatatttca cttggatact atgatgataa
      541 tgttgctatc gtgcttacaa ataaaacaga taaaattctc cgtgtttatt cttatgagga
      601 cggaaaaata agaaaagatt ttgaacaaaa agaaataata actggattaa tgggcgataa
      661 aaaaatagaa ggagatttga aaacgccagt aggtttttat gagttaggcc gtaagtttaa
      721 tccaggtgat ccttattatg gtccctttgc ttttgctaca acttatccaa atttacttga
      781 taaagtacaa ggaaaaacag gtggtggtat ttggatccat ggctatcctt tagatggttc
      841 tagacttgat gaatttaaaa caagaggatg tattgcttta tttaataata atttggagaa
      901 atttgcacaa gttgtacaag ataaaaaagt ttttgttatg acagaagaaa aagaaaaaat
      961 tagagctaaa aaggatcaaa tagctagttt attggctgat ctttttacat ggaaactagc
     1021 ttggacaaat agtgacacta atacctattt aagtttttat gatgagcaag aatttaaacg
     1081 ttttgataaa atgaaatttg aacagtttgc ttccatgaaa aaatctattt tttctcgtaa
     1141 agaagataaa aagattaaat tttcagatat taatatcagc ccttatccga atttagaaaa
     1201 tgaaactatg tatagaattt cattttatga ggattattac actaaaaact atcagtttag
     1261 aggcgataaa attttatacg ttaagataga tagtaaaggt aaaatgaaaa ttttagcaga
     1321 gcaataaatg tctttaataa aaattgatca aaaagcttat gaatataatt taagacatat
     1381 tgctaaaaaa atagggagtt ttcaaagatt aatttgcgtt tttaaagata atgcatatgg
     1441 acatggagct aagcttttag ctccattagc caaaaattta ggagtttctt ttgttgctgt
     1501 taagagtgaa gaagaagctc aagaaatcga agaatttttt gagaatatat taatactatc
     1561 acatcgtcct catggtaatg aaaattctcg atttatttat gctttaaatg atatttccca
     1621 agtaaaaaaa tacaagcaag atataaaaat acatctaaaa atagatacag gcatgcatcg
     1681 caatggaatt tgtgtagaaa atttagagca tgctatagat cttattcgaa gtagtgattt
     1741 aaaacttact ggaatgttta cacattttgc tagcgcagat gaaatggatg gaagtttttt
     1801 tgttcaaaaa gaaaattttc aaaaagctaa aaagatagta aaaaaatatt tttcaaattt
     1861 attatttcat tcgcataatt ctgcagcatt atttagaggg aaaattcctg aagatgaata
     1921 ttgtagagtt gggcttgttc aatttggata tggggattca aatttaaaaa aagttttaag
     1981 cttgtatgct catagattaa gtcaaagaat tttacaaaaa ggacagagta taggatatgg
     2041 aggcattttt actgctgcaa aggatatgga agtagcaact tatgatttgg gttatgctga
     2101 tggtcttttc cgatacaatg gaaaagggga gttagtgctt ggaaatggaa aagtaatgct
     2161 tggaaagatg tcaatggata gtttttcttg tgaaaattct ggtgaggaaa tttgcgtgtt
     2221 taaagatgct gatatttggg ctgatttttt tcatactatt aactatgaaa ttttagtaaa
     2281 attaaatcct aacattcaaa gagttctagt ataaatatgt ttaatatagt tttagttcac
     2341 cctagaatac cgcaaaatac aggtagtata ggtagaatgt gttttaatgc tggttttaaa
     2401 cttcatatcg ttaaaccaac tgtttttgat atttctcaaa aggctgttag aagagcaggg
     2461 cttgattact gggataaatt agaacccatt atttgggaga atcttgaaga atttttaaat
     2521 gaaaatatga tttataaaaa tcgctttttt ttcgcaacaa ctaagagtca aaaagcttat
     2581 tttgatgcaa aatttcagaa aaatgatttc ttattctttg gaagtgagag ttatggctta
     2641 cctatggaat taatgcaatt aaattgggaa aatgctataa ctatacctat gaaatcttat
     2701 ggaagaagtt taaatttagc tacaagcgtt ggtataatct cttatgaagc tttaagacaa
     2761 aattttagca attttgtttc ttaaaagttt caaatttaca caataactta aaacaaataa
     2821 aatcataaag tcctttttat aaaaattatg ttaaagtaaa atttagatta ttttttgagg
     2881 agtttggatg aatttagata ttatgctaga ttttgccaat aaagcgtctg atattatagc
     2941 taataagatt gtcccaaata cagacattat tatggtagtt ttacttattg tttgtgggct
     3001 ttattatagt tttttaactc gctttgttca gtttcgtatg ttgagttctg tatttaaaat
     3061 tcttacagaa aaaaacgaag gacacactaa agaacatatt tcaccttttc aggcattgat
     3121 gatctcaact gcttctagag ttggtatagg aaatatcgct ggaatttctt tggcattggc
     3181 tacaggtggc gctggtgctt tattttggat gtgggttatg gcattttttg gtggtgcctc
     3241 agcatttgct gaaagtacct tagctcaggt ttacaaatca aaagatgata ctggtgggtt
     3301 taaaggtggt ccagcttatt atataaaaaa agccttaggc tcacattttt ttggagcttt
     3361 ttttgctttt attcttatta ttacttatgc ttatggattt aacggacttc aaagtcaaac
     3421 aatgacttcg tcttttaaag tttattatga tatgtttaat ccaaatgctg ctgtagattt
     3481 tgcatcaagt tcttggccaa tgattattgg tattgtttta actatttttg gtgcatggat
     3541 gtttttttct caccatacta aaataggtaa aattagttct ttaattgttc cttttatggc
     3601 tttagcttat gttttacttg ctgtgattgc tgttttaatg aattttgata aaattccttc
     3661 tgtggttcat atgattttac aaagtgcttt tgattttaaa gcgatttttg gtggttttgc
     3721 tggttctgct ttagttatag ggattaaaag aggacttttt tcaaatgaag caggtatggg
     3781 ctcggcacct aatgcagctg cagcagcttt gacaagtcat ccagctaaac aaggtgttat
     3841 acaagccttt tcagttttaa ttgatgttgt tgtttgtaca agttctggat ttttagttct
     3901 tttttctatg gcatatttag gacttggaga aagtaaaatc gatggtggaa tgcctttagt
     3961 tcaagaagct atgcgtgagt attatggtag ctttggaatc cattttatta ctatagctat
     4021 tgttcttttt gcaataactt ctttaatagg aaattattat tatgctcaag ctaatgttaa
     4081 atatttaaca aattccaaat ttgcaatgaa tttgtttaga attacagctg tggctatgat
     4141 ttttataggc tcgcaaatga atttaaaact tgcttggaat ttggctgatt tgactatggc
     4201 tttcatggca acgacaaata ttatatcttt attgctttta ggtggtatag taaataaagt
     4261 tttaaaagat tttaatacgc aacaaaaatc tggtatagat cctaaattta atgctagtaa
     4321 acttggaatt aaaaacgctg aatgttggga ttaaaattca taagccttaa tggcttatga
     4381 attaatgatt taaaacctta tttaaaaatt ctctcaatct ttcattgcta agattttcaa
     4441 atacttcttt agggcttgca tcaacagcaa tttttccttt atccataaaa aatatacgat
     4501 tggcaatatt tctagcaaag cccatttcat gagttactac aagcatagtt aaaccttctt
     4561 ttgcaacatc tttcataatg cttagaacct cgcctatcat ttcaggatct agagctgaag
     4621 taggctcatc aaataaaata acatcaggat tcatcatcaa gcttctagca atagctatgc
     4681 gttgtttttg tccgccagag agcttatggg gcattatatt ttctttgtct gctaaaccca
     4741 ccttagcaag aagtattttt gcttttttta tggcttcttc ttgacttaaa attcctgttt
     4801 taatgggtgt taaacataaa ttttccataa catttttatt agcaaaaaga ttaaaatgct
     4861 gaaataccat gctaactttt tgcctgatct tattaatatc aatttcttta tcaagtatgt
     4921 tttgtttatt gattaaaatt tccccactat cagctagttc taagcgattg atgcagcgta
     4981 aaaatgtact ttttccgcct ccacttggac ctatgatagc tattacatcg ccttttgaga
     5041 ttgtagtgtt aatatttttt aaaacttcta attctccata ttttttttgt aaatttttaa
     5101 cttcaatcat ttttattcat cctaagttca agtttttttg caaaatagct aaaaattttt
     5161 acgcttacgt aataaacaag tccagtgaaa ataataggtt ttggattgta aagtacggct
     5221 tgcaagcttt gactttgcat ggtaatatca ataacactaa taaatcctac aacagaagtt
     5281 tccttaaata aagaaataaa ttcattagct aatgcaggta gaatgttttt agtagcctga
     5341 ggaagaataa tttctttcat tgaagttttg taatcaagtc ccattgctct tgcagcttcc
     5401 atttgtcctt tatctacact attaatgcca cttcttacaa tttctgctat ataagccgag
     5461 ctattaagtc ctagtgcaag aatggctgca taaaggttgt ctataaaagt aaaaattaca
     5521 aaagcaaaaa tcatcaattg taaaattacc ggtgttcctc gtataatgtc tatatattca
     5581 tctataataa aattaagtgt tttaaattta gagaagcgta aaatagctaa gctaaaacca
     5641 ataatcactc cgataataac agcacaagca gttaataaaa gcgtaataag ataacttttt
     5701 aaataagctt ttgcattttc tgtatagcca tagcttacaa ctccactagg atcttgaatt
     5761 tttaatattt ctatcgggaa agaaaaatag ccccataaaa taataataac aaaaaaaaca
     5821 aaaattctta tatttttctg attcaatttg taaacctttt cagagaaatt atttaaaaaa
     5881 agattttata gaaatatctt tgaattttct ctaaagattt aaaaaaatgt gttagaattt
     5941 cccaaaaata aggttgtatt tatggaaatt ttagatttca ttctaatagt tatttttgtg
     6001 tttttaatga ttgttttggt cataggtttt aatcgtcaaa tgatgcaaaa aaacaaagaa
     6061 agagaagaaa gatttaaaaa atataaaaaa ggagaacaaa atgagtaaaa aagtattaat
     6121 tccattggct caaggttttg aggaagctga atttatagga attgcggatg ttttaaaacg
     6181 agcaagagaa ttaaatccag atttggaagt tgttatagct tcgttaaaca gtgagttatt
     6241 agtaaaaggt gctaatggca ttagtataaa agcagattgt tctatagagg atgttgatat
     6301 agaaaattta gatgccattg ctttggcggg tggctttgaa ggtatgatga atcttaagaa
     6361 ttcaaatgtt attttaaata tcattaaaca acttcatagc aaaaataaaa ttgttgccgc
     6421 aatctgtgct tctcctatag tcttaaatga agcaggtgtt ttagagggcg agtttgcttg
     6481 ctatcctagt tgtgaagttg gacttaatgg aaatcgtgtt aacaaggctg tagttgtaaa
     6541 taaaaatgtt ataacttcag caggtccagc tacggcaatt ctttttggtt tagagctagc
     6601 taaaaagtta tgcggtgatg aaatttatca aaaattatat gagggaatgt tgctaccttt
     6661 gacaaaatag tttaaatggt agtttttcta ccatttaaac taaaataaag cttgaggatt
     6721 ttcttttttt gttttttcct taggcagttc aaaacctcca agcatatgaa aatgcaaatg
     6781 aaaaacttct tgtccactat tttttccaca gtttgttacc aagcgatatc cacttttatc
     6841 tacacctaaa agaacagcta attcttgtat gaaacttgtc attttggcca taagttcagg
     6901 atcaaattct tgaaagtctt taaaatgttt tttagggatt ataagtatat gtataggtgc
     6961 tttgggtgca atatcatgaa atgctagaaa atcgtcactt tcaagcactt tattgcatgg
     7021 aagtttacct tcaactatga gttcaaaaat tgttttttct tgcattattt atcctttttt
     7081 attgttggtt tgatacaatt atatctttaa agtttggttt ttatgctgaa tttaaaatag
     7141 tttttaatag aattagaact tgaaatattt tatttaaggt aagaaaattg caaaatttta
     7201 tagaacagat tcaaaaatgt gagaatttaa atgatttgga agccattagg atttccgttc
     7261 ttggaaaaaa aggtatttta acagaaggct ttacaaagct taaagagtta gaagatgagg
     7321 cgaaaaaaga atttgctgct aaattaaatg cacaaaaaga aatatttaat gaggcttatt
     7381 tagccaaatt taaagatttg gaaaatcttg ctttagaaga aagaatgaaa caagatgctt
     7441 taaattttaa ctattttgat gaaagtatta caacaggtgc cttgcatcct gttatgagca
     7501 ccatggataa aatcatagaa tattttatag ctttgaattt tagcatagaa aaagggcctt
     7561 taatagaaga tgactttcat aattttgaag cgttaaattt acctaaatct caccccgcaa
     7621 gagatatgca agataccttt tattttgatg ataaaaggct tttaagaaca caaacttcgc
     7681 cagtgcaaat acggacaatg cttgcacaaa aacctcctat taggatgata gcccctggtg
     7741 ctgtatttag aagagatttt gatattacgc atactcctat gtttcatcaa gttgaaggcc
     7801 ttgtggtgga agaagggcaa aaggttagct ttgcaaattt aaaaagtgta ttggaagatt
     7861 ttttgcgtta tatgtttgga gatgtgaaag ttcgttttcg tccaagtttt ttcccattta
     7921 cagaaccttc tgctgaagtt gatatttctt gtgtattttg caaaggaaag ggttgtagag
     7981 tttgcaaaca tacaggttgg cttgaagttt taggatgtgg aatagttgat cctaatgttt
     8041 ataattttgt tggttatgaa aatgtaagtg gttatgcttt tggattggga gtagaacgtt
     8101 ttgcaatgct tttgcatcaa attccagatt taagatcttt atttgaaggt gatttgagat
     8161 tattggagca gtttagatga taattactaa aagttggttg aatgattggt tagaacttga
     8221 agaaataagt tcagataaaa tagctaaaac tttaaactct ataggtatag aagttgatag
     8281 ggttggcgct ttaaaggctc cagataaagt tgttgtaggc tatgttaagg aaaaaattaa
     8341 acatgaaaat tcagataaat taagcatttg tcaagttgat atcggaagtg aaatcttgca
     8401 aattgtctgc ggtgctgcga atgttgatgc aggacaattt gtaactgttg caactaaagg
     8461 tgctatcatg ccaaacggta tggaaataaa agaagcaaaa ttgcgaggag tggattcttg
     8521 tggtatgctt tgttctagtt tagaactggg ttttgaaaaa atcaatgaag gaattatgct
     8581 tttagatgag agtataggga aattagaact tgggagacct ttaaatactt atgaaatttt
     8641 taatgatgag ctaatagaag tggaacttac tcctaatagg ggtgattgtt taagtattta
     8701 tggtatagct cgtgatttag ccgcagcttt aaatttaaat ttaaaagaac caaaaccatt
     8761 taaagaaagt gaaaatgttt taggtatcgg tagaattttg cgcttagcag ctgagaaaga
     8821 acttaatgga ctttataatt atcgagccat agggctaaaa gaagaaattc aaacaaattt
     8881 attgcttagt ttaagacttg ctcaaattga aggtttggga aaaaattcca tagaaaattt
     8941 attaaattat gcaacgcatt caactggtgt tctttttaat gcttatgatt taagtagttt
     9001 ttctgaaaaa gatgaagaat ttaccattaa tttaagcaag caagtgcatg gagaaacaaa
     9061 agtatcttac aaagataaac ttttaagctt tagcggaatt ttccaaaata atgaaagtag
     9121 atgtaaagat gattctaaaa taattattat tgaggctaat tataccgatc cattggtaat
     9181 tgcagatgct aaaatatatc ataaagatca agatgaaaaa atgctttata gaagttttag
     9241 gggaagtgaa cctaaattaa atttaggaat ggattttttg cttggtattt ttgagcagat
     9301 tccaaatctt gttatttata gttcttctca acaaatttta actgacaaag aattaccaat
     9361 cataccaata agtattgaag gtattagcga tataatagga caaaatgttg ataaagatga
     9421 agtattaaaa atattaaaga aattaggttt tgagctcata ctttcaggtg aagggcttat
     9481 aaatgttaaa gcacctttac atcgtcctga tattaaaaat ttatcagata tttgcgagga
     9541 agttgtaaga attataggta ttgataatat tgcttccaag ggtttagaat ttatagaaaa
     9601 aaatcgttta aattctgcat ataaaaatta tattgagttt ttaaatttaa gaaaaagagc
     9661 agtagctagt ggttattttg aaagcttaca ttatgttttg gataatggag aagaacttaa
     9721 aagattaggt tttgactctg ttaaattaaa actaatcaat ccaattacag cagaacttaa
     9781 tactttaaga acaacccttt taaatcattt gttaaatgca gcaagtttaa atgcaaaaaa
     9841 ttctaaaaaa attattaaac tttttgaatt aggggctgtt ttcaatgtta ataatcaaga
     9901 attaaatcgt attgcattta tccattctgg cttaaaagaa gaagctaaaa tttccaacaa
     9961 ggccaaacct gaatcggtgc aattttatga ttttctttta gatattaaaa atattatagg
    10021 tgattttaaa ctaaaatcat caaaatataa tattttaagc ccttatgaac aagcagatat
    10081 ttatctatcg gatattaaag taggttttat aggccgtttg catttaaaaa tagaaaatga
    10141 gagagattta ccaaaaacat atatttgcga acttgattta gatttaatca ggcaagattt
    10201 taaaatagct aagccttact ccaaattccc agctatcact agagatctta gcgtgttaat
    10261 acctaaaggt tttgaataca atcagattaa aaattgtatc gaagaattga atttagaaat
    10321 acttgaaaat tttcgtttag ttgatattta tagtgatgaa aaccttaaag aattttatag
    10381 cattactata agtttttctt ttagggatat aaataaaact ctagaagata atcaagtgaa
    10441 tgaatgtatg gataaaattt taaatactct taaaaatttg ggtcttgatt taagatgaaa
    10501 atttacaaat tgcaaacccc tgtaaatgct atacttgaaa atatagcagc agataaaagc
    10561 atatctcatc gttttgctat attttcgctt ttaacacaag aagaaaataa ggctcaaaat
    10621 tatctcttag ctcaagatac tttaaacact cttgaaatta taaaaaatct tggagctaaa
    10681 attgaacaaa aagattcttg cgtcaaaatt atacccccta aagaaatttt atctccaaat
    10741 tgtattttag actgtggaaa ttcaggaact gctatgcgtt tgatgatagg atttttagca
    10801 ggaatttctg gtttttttgt tttaagtgga gataagtatt taaacaatcg tcctatgaga
    10861 aggataagca aaccacttac tcaaataggc gctagaattt atggaagaaa tgaggcaaat
    10921 ttagctccac tttgtataga aggtcaaaaa ttaaaagctt ttaattttaa aagcgaaatt
    10981 tcttcggctc aagttaaaac agctatgatt ttatctgctt ttagggctga taatgtatgc
    11041 acttttagtg aaatttctct tagtcgaaat catagtgaaa acatgctaaa ggctatgaaa
    11101 gctccaataa gggttagtaa tgatggctta agtcttgaaa taaatccttt aaaaaaacct
    11161 ttaaaagctc aaaatataat cattcctaat gatccttctt cggcttttta ttttgtttta
    11221 gcagctatta ttttacctaa atctcaaatt attttaaaaa atattttgct taatcctact
    11281 cgtatagagg cgtataaaat tttgcaaaaa atgggtgcca aacttgaaat gacaataact
    11341 caaaatgatt ttgaaactat tggtgagatc agggtggagt ctagcaagct taatggcata
    11401 gaagttaaag ataatatcgc ttggttaata gatgaagcgc ctgctttggc tatagctttt
    11461 gctttggcta agggtaaatc tagtttaata aatgctaaag aattacgcgt taaagaaagc
    11521 gataggattg ctgtgatggt tgaaaatcta aagctttgtg gtgttgaagc tagagaactt
    11581 gatgatggtt ttgaaataga aggtggatgc gaactaaaat cttcaaaaat taaaagctat
    11641 ggagatcacc gtattgctat gagttttgct attttaggtt tgctttgcgg aatcgagatt
    11701 gatgatagtg attgtataaa aacttctttt ccaaatttta tagagatttt atcaaattta
    11761 ggagctagga ttgattattg aattagcaaa aaactatggt ttttgttttg gtgttaaaag
    11821 agctattaaa aaagcagaac aaataaaaga tgccgcaact ataggccctc ttattcacaa
    11881 taacgaagaa atttctcgtt tgcaaaaaaa ttttaatgtc aaaactttgg aaaatataca
    11941 agctttaagt aatgaaaaaa aggctattat aagaactcat ggtattacaa agcaagattt
    12001 agaagaattg agaaaaaaag atatagaaat ttttgatgcc acttgtcctt ttgttacaaa
    12061 accacaacaa atttgcgagc aaatgagtaa ggagggttat gaagttgtta tttttggaga
    12121 tgaaaatcat cccgaagtta aaggagtcaa aagttatgta agtacaaaag cttatgtagt
    12181 tttggataaa aaagaacttc aaaatataaa acttcctaat aaaatagctg tagtaagcca
    12241 aacaactaag aagcctgagc attttatgga gatagtaaat tttttaatac ttaaaaccaa
    12301 agaagtaaga gtttttaaca ctatatgtga tgcaaccttt aaaaatcaag atgccattaa
    12361 agaactctcg cttaaaagtg atgttatggt tgttgtaggg ggtaaaaact cagccaatac
    12421 aaaacaactt tttttaattg caaaaaccaa ttgtgaagat agctatctaa ttgaaaccga
    12481 agaagagtta aaaaaagaat ggtttttgga taaaaaacat tgcggcatta gtgcaggtgc
    12541 tagtactc
//
LOCUS       DAZBIH010000043        12025 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.043, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000043 DAZBIH010000000
VERSION     DAZBIH010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 12025)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12025)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12025
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.043"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            114..842
                     /gene="pebC"
                     /locus_tag="ACHFOB_000987"
     CDS             114..842
                     /gene="pebC"
                     /locus_tag="ACHFOB_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HFN5799798.1"
                     /translation="MIELKNVNKYYGTHHVLKNINLSVKEGEKLVIIGPSGSGKSTTI
                     RCMNGLEEVSSGEVVVNNLVLNHKNKIEICRKYCAMVFQHFNLYPHMTVLQNLTLAPM
                     KLQKKSKKEAEETAFKYLKVVGLVDKANVYPATLSGGQQQRVAIARSLCTKKPYILFD
                     EPTSALDPETIQEVLDVMKEISHQSNTTMVVVTHEMGFAKEVADRIIFMEDGAIVEEN
                     IPSEFFSNPKTERARLFLGKILKN"
     gene            864..1643
                     /gene="peb1A"
                     /locus_tag="ACHFOB_000988"
     CDS             864..1643
                     /gene="peb1A"
                     /locus_tag="ACHFOB_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adhesin/ABC transporter
                     aspartate/glutamate-binding protein PEB1a"
                     /protein_id="HFN5799799.1"
                     /translation="MVFRKSLLKLAVFALGACVAFSNANAAEGKLESIKSKGQLIVGV
                     KNDVPHYALLDQATGEIKGFEVDVAKLLAKSILGDDKKIKLVAVNAKTRGPLLDNGSV
                     DAVIATFTITPERKRIYNFSEPYYQDAIGLLVLKEKNYKSLADMKGANIGVAQAATTK
                     KAIGEAAKKIGIDVKFSEFPDYPSIKAALDAKRVDAFSVDKSILLGYVDDKSEILPDS
                     FEPQSYGIVTKKDDPAFAKYVDDFVKEHKNEIDALAKKWGL"
     gene            1645..2397
                     /locus_tag="ACHFOB_000989"
     CDS             1645..2397
                     /locus_tag="ACHFOB_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5799800.1"
                     /translation="MNESVGFVEHLRQILTSWGLYDENSISPFAVWKFLDALDNKDAF
                     INGFIYTLEVSILALLIATIFGTIGGVMATSRFKIIRAYTRIYVELFQNVPLVIQIFF
                     LFYALPVLGIRLDIFTIGVLGVGAYHGAYVSEVVRSGILAVPRGQFEASASQGFTYIQ
                     QMRYIIVPQTIRIILPPMTNQMVNLIKNTSVLLIVGGAELMHSADSYAADYGNYAPAY
                     IFAAVLYFIICYPLAYFAKAYENKLKKAHLTR"
     gene            2408..3067
                     /locus_tag="ACHFOB_000990"
     CDS             2408..3067
                     /locus_tag="ACHFOB_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5799801.1"
                     /translation="MENVFNAQNIEFLMQGLFLTLKIALATCIISIVFGTFLAITKNY
                     GDRLSKFLAACYIDIFRNTPLLLWMLAACFVLPVFFGQFPQAFWGTIGFSLYTSSVMA
                     EIIRGGLNSIPKGQFEAAYSQGFGKFFTLFYIILPQTFRKIIPALLSQIVTTVKDTAY
                     LAGLGIAELTYNSKTILAKLTSFEEILAMIGVVAGIYFIICFSLSMLVRYYAKKTAYI
                     S"
     gene            3175..4104
                     /gene="prsA"
                     /locus_tag="ACHFOB_000991"
     CDS             3175..4104
                     /gene="prsA"
                     /locus_tag="ACHFOB_000991"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0006015 - 5-phosphoribose 1-diphosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009156 - ribonucleoside monophosphate
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009165 - nucleotide biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HFN5799802.1"
                     /translation="MRGYKIFSGSANVEFARQVSKYLSLPLSDAGVKRFSDGEISVQI
                     DESVRGKDVFIIQSTCAPTNDNLMELLILTDALRRSSANSITAIIPYFGYARQDRKAN
                     PRVPITAKLVANLIQAAGIDRVATIDLHAGQIQGFFDIPVDNLYGSIVFNDYIKAKHF
                     KNAIIGSPDIGGVARARSVAKHLGLDIVIVDKRREKANESEVMNIIGDVKDKEVILVD
                     DIIDTAGTIVKAAEALKEKGAKSVMACCTHAVLSGKAYERIASGALDELVVTDTIPLK
                     EQLPNIKVLSVTPVFAEVIRRVYHNESVNSLFI"
     gene            4271..6382
                     /gene="cstA"
                     /locus_tag="ACHFOB_000992"
     CDS             4271..6382
                     /gene="cstA"
                     /locus_tag="ACHFOB_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009267 - cellular response to starvation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon starvation CstA family protein"
                     /protein_id="HFN5799803.1"
                     /translation="MTQLSTKILWLFVATLGAICFGYLALQNGESVSAIYLVVAAVCI
                     YMIGYRFYGRFVAYKVLELDKNRATPALVENDGRDFVPTNKAVLFGHHFAAIAGAGPL
                     VGPILAAQMGYLPSMLWILVGGVLAGAVHDFVVLFISTRRKGRSLGEMIKDEMGKFTG
                     GVAMVAIFGIMLIIIAILAMVVVKALAESPWGLFTIAMTIPIAIFMGIYMRFIRPGRV
                     GEASIIGFVLLILAIHYGSVIAADPYWAKIFTLEAPTLAIVMMAYGFIASVLPVWFLL
                     APRDYLSTFLKIGVIVVMAVAIVLVAPDLQMPKANTQYFDGTGPVFAGGVFPFLFITI
                     ACGAISGFHALISSGTTPKMLENETHALAVGYGSMLAESAVAIMALICACILHPGLYF
                     AINSSSALIGTDVVNVAQTISSWGFSITPEEITTLTANIGEHTILSRTGGAPTFAIGV
                     ALILHELFGGVDLMAFWYHFAILFEALFILTAVDAGTRACRFMVQDILGNVYKPLGDI
                     HNYPAGLLATALSVAGWGYFLYQGAIDPKGGIYTLWPLFGVSNQMLAGMALLLATTIL
                     VKMGKARYTWVTLVPAVFVLVATLYGGIQKIMPYEEGNKVANAVSHVAAVSIQSQKIK
                     DLEFKLNNTKDEKEISTIKKEISIATQNKVGNLLNAILCVFFMIATLLVIISCIGICL
                     GKIKIPLKETKYIKIDEFQKI"
     gene            6363..6560
                     /gene="kcuS"
                     /locus_tag="ACHFOB_000993"
     CDS             6363..6560
                     /gene="kcuS"
                     /locus_tag="ACHFOB_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_148936501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KCU-star family selenoprotein"
                     /protein_id="HFN5799804.1"
                     /translation="MNFKKFKYYYEKAERFFHPLVGLSSYDKYLEHMKQKHPGKIPKT
                     RGEFFKECLDKKYNSGGLNKC"
     gene            complement(6600..7013)
                     /locus_tag="ACHFOB_000994"
     CDS             complement(6600..7013)
                     /locus_tag="ACHFOB_000994"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - fatty acyl-CoA hydrolase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HFN5799805.1"
                     /translation="MRDMGEPKLKIVAMPSDTNPAGNIFGGWILSQIDLAGAIAAREL
                     SPERVVTISMDKVVFKEPVFIGDIISCYSKVVNVGNTSISVEVEVTAQRVDSQGCTSC
                     INVTSALVTYVSVTRDGKKKPISEELKRIHGFLNA"
     gene            7075..8907
                     /gene="ciaB"
                     /locus_tag="ACHFOB_000995"
     CDS             7075..8907
                     /gene="ciaB"
                     /locus_tag="ACHFOB_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion protein CiaB"
                     /protein_id="HFN5799806.1"
                     /translation="MNNFKEIAKLVRKYKERNNALYEFLDKEDVSEYFRSLISLSELK
                     QDKTTMLAILRRLIDLKEENLVQEWKKNNFKEDKIIELKHKFYEEVRKFYEKEHQNLI
                     NEIKEKKLLNNFYQSLIQGVHNIGLIMNIFEISWTKEIIEKNNKILSTQFPNLDDAME
                     FLRKNHLYQKTPEGEICERSYGVLVRIGNLWKFVPYARFFENEILKLEFAFENMIDQL
                     KIFASSKEEKAYIEYFEKLKLAFCEKDEDRVIKAWQEAEFAWMKVKSPLQVGHPLEYY
                     EDNYTHAVALEWDIRIEDENDFDVLKFGSEIKESFEHVYKNIGLEDCELEKEVLSNIE
                     KTQLYICTPMIFYGAELKGLFSAQVVPNDEFVSSKAGKKIFAFINFVYENAKTKPFMK
                     ISSEVFDKEFLDFGRNILFYQEKIWKRVYEVSTIGHEFGHIFFIANDTEKTMNQSGFF
                     KNIEEYKATTGGLINFFYHEQDDLIMPVFHELIKRAIGLISWQRVDEVRPYYTEGLIH
                     LSLLFESEVLIFENNNLKINFDLGHYEKFKELTLKNYHELAKHYALRLDAKEFLSRFC
                     EIEDNIFLPIMPKCKEFVKFYYDLYEKIGNEIDNSGEFERYKKK"
     gene            9009..9305
                     /gene="hupB"
                     /locus_tag="ACHFOB_000996"
     CDS             9009..9305
                     /gene="hupB"
                     /locus_tag="ACHFOB_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0030261 - chromosome condensation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HFN5799807.1"
                     /translation="MTKADFISLVAQTAGLTKKDATTATDAVISTITDVLAKGDSISF
                     IGFGTFSTQERAAREARVPSTGKTIKVPATRVAKFKVGKNLKEAVAKASGKKKK"
     gene            9432..10331
                     /gene="cysM"
                     /locus_tag="ACHFOB_000997"
     CDS             9432..10331
                     /gene="cysM"
                     /locus_tag="ACHFOB_000997"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase B"
                     /protein_id="HFN5799808.1"
                     /translation="MKVHEKVSELIGNTPIIHLKKFGINVFAKCEFLNPSHSIKDRAA
                     FEMIKDALDSKKINQDTTIVEATSGNTGISLAMICADLGLKFIAVMPESMSLERRKMI
                     TLFGARLELTPANLGMKGAVDKANEILLNTPNSFMVSQFENISNKNAHCKNTALEILR
                     DLDNELDIFVAGFGTGGTISGVGEILKEKLEKVHIVGVEPLNSPLLSKGEAGSHKIQG
                     IGANFIPAILNKEVIDEVITVSNEDAINTAKELAKSGLMVGISSGANVFAASMLAKKF
                     PDKRILTMLNDTAERYLSTDLFA"
     gene            complement(10338..10898)
                     /locus_tag="ACHFOB_000998"
     CDS             complement(10338..10898)
                     /locus_tag="ACHFOB_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SCO family protein"
                     /protein_id="HFN5799809.1"
                     /translation="MKKNIILFIVIVAIILGVIFFIKNHQNSYDFILKSDLKEETTLK
                     DFKGDKLIIYFGYTYCPDVCPATLSLVGKALKQINNPKAHLLFISLDLNRDNNLSNTN
                     EWLRYFYPKADALIAKDEKTLQKITKQYNVQYQKIDLNDSFMGYSIAHSNMLYLIDEK
                     GHFYKEISDLNPQEILRELRIFLNSQ"
     gene            complement(10895..11347)
                     /locus_tag="ACHFOB_000999"
     CDS             complement(10895..11347)
                     /locus_tag="ACHFOB_000999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799810.1"
                     /translation="MRKIIFILAFAFVIVILYIIFDFYIIKDSKKITKADFSTPLTCD
                     LNVKDCTYSFNNKEVLISLNPKPLQSLDVTNLKIVNLGNYNNLGIKIYGLNMYMGEIK
                     PKIHRLNSTDYESKIVLATCVLDTMRFRVEFMDNNKPIGFYFDFELKK"
     gene            complement(11351..11770)
                     /locus_tag="ACHFOB_001000"
     CDS             complement(11351..11770)
                     /locus_tag="ACHFOB_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016531 - copper chaperone activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone PCu(A)C"
                     /protein_id="HFN5799811.1"
                     /translation="MKKILLLGALFAVNLWAVNDIEVKNAFVKQTPPHAQNSAIFLTI
                     FNNTDKDIALISAKSDISEVSELHTHIHKDGKMMMQKIPEIIIKAHSSTELKSGGYHI
                     MLLKLKKPIIKDTKVNLDLKFNNHKIIELKNIDSKEF"
     gene            complement(11856..>12025)
                     /locus_tag="ACHFOB_001001"
     CDS             complement(11856..>12025)
                     /locus_tag="ACHFOB_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799812.1"
                     /translation="KFNIVNGDILINFIGRSITDDSRFRVEFLNNNAPTGFFFDFDVT
                     MQKNFQTGNTH"
BASE COUNT         4143 a         1468 c         2136 g         4278 t
ORIGIN      
        1 acactttaga aatttattag taaaaataag ttacattttg aagtagtttt ctttatttaa
       61 tgataaaata attttaatta attttatatt tagttaaaaa taaaggaaaa aacttgattg
      121 aattaaaaaa tgtaaacaaa tactacggaa ctcatcatgt tctaaagaat attaatcttt
      181 ctgttaaaga aggtgagaag cttgttatta taggtccaag tggaagtgga aaaagtacaa
      241 ctatccgttg catgaatggg cttgaagaag ttagttcagg cgaggtcgta gttaacaatc
      301 ttgttttaaa tcataaaaat aaaattgaaa tttgtcgaaa atattgtgca atggtttttc
      361 agcattttaa tttatatcca catatgacgg ttttgcaaaa tttgacctta gctccaatga
      421 aacttcaaaa aaaatctaaa aaagaagctg aagaaacagc ttttaagtat ttaaaagtcg
      481 taggtttagt ggataaagca aatgtttatc cagcaaccct ttcaggcgga caacaacaac
      541 gcgttgctat agcaagatca ctttgtacta aaaaacccta tattttattt gatgaaccta
      601 cttcagccct tgatccagaa accatacaag aggttttaga tgtaatgaaa gaaatttcac
      661 atcaaagcaa tactaccatg gtggttgtta cacacgaaat gggttttgca aaagaagtag
      721 cagataggat tatttttatg gaagatggtg ctattgtgga agaaaatatt cctagtgaat
      781 ttttctcaaa tccaaaaacc gaaagagcgc gactcttttt agggaaaatt cttaaaaatt
      841 aaccaaaatt gaaaggagaa aaaatggttt ttagaaaatc tttattaaag ttggcagttt
      901 ttgctctagg tgcttgtgtt gcatttagca atgctaatgc agcagaaggt aaacttgagt
      961 ctattaaatc taaaggacaa ttaatagttg gtgttaaaaa tgatgttccg cattatgctt
     1021 tgcttgatca agcaacaggt gaaattaaag gttttgaagt agatgttgcc aaattactag
     1081 ctaaaagtat attaggtgat gataaaaaaa taaaactagt tgcagttaat gctaaaacaa
     1141 gaggcccttt gcttgataat ggcagtgtag atgcagtgat agcaactttt actattactc
     1201 cagagagaaa aagaatttat aatttctcag agccttatta tcaagatgct atagggcttt
     1261 tggttttaaa agaaaaaaat tataaatctt tagctgatat gaaaggtgca aatattggag
     1321 tggctcaagc tgcaactaca aaaaaagcta taggtgaagc tgctaaaaaa attggtattg
     1381 atgttaaatt tagtgaattt cctgattatc caagtataaa agctgcttta gatgctaaaa
     1441 gagttgatgc gttttctgta gacaaatcaa tattgttagg ctatgtggat gataaaagtg
     1501 aaattttgcc agatagtttt gaaccacaaa gttatggtat tgtaaccaaa aaagatgatc
     1561 cagcttttgc aaaatatgtt gatgattttg taaaagaaca taaaaatgaa attgatgctt
     1621 tagcgaaaaa atggggttta taatatgaat gaaagtgtag gttttgttga acatttaaga
     1681 caaattctta cttcttgggg tttatatgat gaaaatagta taagcccttt tgcggtatgg
     1741 aaatttttag atgctttgga taataaagat gcttttatta atggttttat ttatacttta
     1801 gaagtaagca ttcttgcttt gcttatagct acaatttttg gaactatagg cggagttatg
     1861 gctacaagta gatttaaaat tatcagagcc tacactagaa tttacgtaga gctttttcaa
     1921 aatgttcctt tggtaataca aattttcttt ttgttttatg ccttgcctgt tttaggtata
     1981 agacttgata tatttactat tggtgtattg ggtgttggag cttatcacgg agcttatgta
     2041 agcgaggtgg ttagaagtgg aattttggct gtgccaagag gtcagtttga agcttctgct
     2101 tctcaagggt ttacttatat tcaacaaatg cgttatatta tagtacctca aaccattaga
     2161 attattttac caccgatgac aaatcaaatg gtaaatttaa tcaaaaatac ctctgtattg
     2221 cttattgtag gtggagctga gttaatgcat tctgctgata gttatgcagc tgattatgga
     2281 aattatgcgc cagcttatat atttgcagcg gttttatatt ttataatttg ttatcctttg
     2341 gcttattttg caaaggctta tgaaaataaa ttaaaaaaag cacatttaac gagataaagg
     2401 gttgttaatg gaaaatgttt ttaatgcaca aaatattgaa tttttaatgc aaggtttatt
     2461 tctgacatta aaaatagcct tagcaacttg tattatttcg attgtttttg gaactttttt
     2521 agctataact aaaaattatg gggatagatt aagtaaattt ttagcagctt gctatataga
     2581 tatttttaga aatactcctt tattattatg gatgcttgca gcttgttttg ttctacctgt
     2641 attttttgga caatttcctc aagctttttg gggtactata ggattttcac tttatacgag
     2701 ttcggttatg gctgaaatta ttagaggtgg attaaattct ataccaaaag gtcagtttga
     2761 agcagcttat tctcaaggtt ttggtaaatt ttttactctt ttttatatta ttttaccaca
     2821 aacttttaga aaaataatac ctgctttatt atctcaaatt gtaaccactg taaaggatac
     2881 agcttattta gcgggtttag gtatagctga acttacttat aattcaaaaa ctatattggc
     2941 aaaactaaca agttttgaag aaattttagc gatgataggt gttgttgcgg gaatttattt
     3001 tataatatgt ttttcgcttt ctatgctggt aagatattat gccaaaaaga cagcttacat
     3061 ttcttaaaaa agcttatatt tttatataag ctttttaaat ttacagcagt ttttaacatt
     3121 ttttttatta aaatcttttg tattaattca taattttatt gattaaggtt ttttatgcga
     3181 ggttataaaa ttttttcagg ctcagctaat gtcgaatttg caagacaagt ttctaaatat
     3241 ctctccctgc ctttaagtga tgctggagta aagcggttta gtgatggaga gattagcgtt
     3301 caaattgacg agagtgtacg cggaaaggat gtttttatta ttcaaagtac ttgcgctcct
     3361 acaaacgata atttaatgga acttttaatt cttacagatg ctttgcgtcg ctcaagtgca
     3421 aattcaatta cggctattat cccatatttt ggctatgcga gacaagatag aaaagcaaat
     3481 cctagagtgc caattactgc taaacttgtg gctaatttga ttcaagcagc tgggattgat
     3541 cgcgtagcta cgatagattt gcatgcagga caaattcagg gtttttttga tattccagta
     3601 gataatcttt atggaagtat agtttttaat gattacatta aagccaaaca ttttaaaaat
     3661 gctattatag gaagtccaga tatagggggt gttgcaagag ctaggagtgt tgcaaagcat
     3721 ttaggacttg atatagttat agttgataag cgtcgtgaaa aagccaatga aagtgaagta
     3781 atgaatatca ttggagatgt aaaagataaa gaagttatct tagtggatga tattattgat
     3841 actgctggca ctatagttaa agccgcggaa gctttaaaag aaaaaggtgc aaaatctgtt
     3901 atggcttgct gtactcatgc agttttaagt ggaaaagcct atgagagaat agcaagtgga
     3961 gctttagatg agcttgtggt aacagatact atacctttaa aagagcaatt accaaatatt
     4021 aaagtattaa gcgttacacc tgtttttgct gaagtaatac gtcgtgttta tcataacgaa
     4081 agtgtaaatt ctctctttat ttagattaaa aaagcttaaa gattattttt aagcttttca
     4141 tttttatgct acttaaagaa acaaaaaaca tatatttttt taaaaatgtg aaaaaactaa
     4201 acatctttct atacaattta atctataaat ctgctattct ttgaaaatat tttattttct
     4261 taggagaaat atgactcagt taagtactaa aattttatgg ttgtttgttg caactttagg
     4321 cgctatttgt tttggttatt tagctttaca aaatggcgaa agtgtatcag cgatttattt
     4381 ggtggttgct gctgtatgta tttatatgat aggatataga ttttatgggc gttttgtagc
     4441 ttataaggtt ttagaacttg ataaaaatcg tgcaacacca gcacttgtag aaaatgatgg
     4501 gcgtgatttt gtgcctacaa ataaagctgt attatttgga catcattttg ctgctattgc
     4561 aggagcaggt ccattagtag gacctatctt ggccgctcaa atggggtatt tgccttctat
     4621 gctttggatt ttagtaggag gagttttagc aggtgctgtg catgattttg ttgttctttt
     4681 tatatctact cgtagaaaag gtagaagtct tggcgagatg attaaggatg agatgggtaa
     4741 atttacaggt ggagttgcta tggtggcgat ttttggcatt atgcttatta ttattgccat
     4801 tttagctatg gtggttgtaa aagctttagc agaatctcca tggggtttat ttactatcgc
     4861 aatgactatt cctatagcaa tatttatggg aatttatatg cgttttatcc gtccaggtag
     4921 agtaggggag gcttctataa taggttttgt gcttttaatt ttggctattc attatggtag
     4981 cgttatagct gctgatcctt attgggctaa aatatttact ttagaagctc caactttggc
     5041 aattgttatg atggcttatg gttttattgc ttctgtttta cctgtgtggt ttttacttgc
     5101 tccaagagat tatctttcaa cttttttgaa aatcggtgtt attgtggtaa tggctgtagc
     5161 tattgttttg gttgctcctg atttacaaat gccaaaagca aatactcagt attttgatgg
     5221 aacaggtcca gtatttgcag gtggagtgtt tccattttta tttattacca ttgcttgtgg
     5281 tgcgatcagt ggttttcatg ctttgatttc tagtggaact actcctaaaa tgcttgaaaa
     5341 cgaaactcat gctttggctg ttggatatgg ctctatgctt gctgaaagcg ctgtggcgat
     5401 tatggcttta atttgtgctt gtattttaca tccaggtctt tattttgcta taaactcaag
     5461 ctctgctttg ataggaacag atgttgtaaa tgtagcacaa accatttcaa gttggggatt
     5521 tagtattact cctgaagaaa ttactacttt aaccgcaaat ataggagagc atactatact
     5581 ttcaagaaca ggtggagctc caacttttgc tataggtgta gctttgatct tgcatgaact
     5641 ttttggcggc gtggatttga tggctttttg gtatcatttt gctatattgt ttgaagcttt
     5701 atttatttta acagcggtgg atgctgggac aagggcttgt cgttttatgg tgcaagatat
     5761 attgggtaat gtttataaac ctttaggaga tattcataat tatccagctg gacttttggc
     5821 tacggcttta agtgttgcag gttggggata ttttctttat caaggtgcca ttgatcctaa
     5881 gggaggaatt tatacgcttt ggcctctttt tggcgtgagt aatcaaatgc ttgcgggtat
     5941 ggctttgctt cttgctacaa ctatacttgt aaaaatgggc aaggcaagat atacttgggt
     6001 tactttagta cctgcggtat ttgtcttagt ggcaactctg tatggaggaa ttcaaaaaat
     6061 tatgccttat gaagaaggca ataaagtagc aaatgcggta agtcatgtag ccgccgttag
     6121 catacaaagt caaaaaatta aagatttaga atttaaatta aataatacta aagatgaaaa
     6181 agaaatttct acaattaaaa aagaaatttc aatagccact caaaataaag ttggaaattt
     6241 acttaatgca attctttgtg tgttctttat gatagctact ttgcttgtta taatttcttg
     6301 tataggaatt tgtttaggta aaattaaaat tcctcttaaa gaaactaagt atattaagat
     6361 tgatgaattt caaaaaattt aagtattatt atgaaaaagc cgaaaggttt tttcatccct
     6421 tggtgggact ttctagttat gataagtatt tagaacacat gaaacaaaaa catccaggaa
     6481 aaattccaaa aaccagaggg gaatttttca aagaatgtct agataaaaaa tataatagtg
     6541 gcggtttaaa taaatgctga taagcttaaa ggataaagtt ttatcataca aaataagctt
     6601 taagcattta aaaagccatg aattctttta agttcttcac taataggctt tttctttcca
     6661 tctcttgtaa cacttacata agttactaaa gccgaagtta cattaatgca agaagtacaa
     6721 ccttgagaat ccaccctttg agctgtgact tctacttcaa cgctgattga agtgttgccc
     6781 acatttacaa ctttagagta acaagaaatt atatcgccta taaaaacagg ttctttaaaa
     6841 actactttat ccatagagat ggttacaacg cgttcaggag aaagttctct tgctgcgata
     6901 gctcctgcta aatcgatttg tgaaagtatc catccgccaa aaatatttcc tgctggattt
     6961 gtgtcacttg gcatagctac aatttttaat tttggttctc ccatatctct catttttact
     7021 ccttatttta aaaaatgaat tataattaaa aaagttaaaa aggagaataa aagtatgaat
     7081 aattttaaag aaatagctaa attggttaga aaatacaaag aaagaaataa tgcgttatat
     7141 gagtttttag acaaagaaga tgtgagcgag tattttagat ctttgatttc tttaagtgag
     7201 ttaaaacaag ataaaacaac tatgctagcc atacttaggc gtttgattga tttaaaagaa
     7261 gaaaatttag ttcaagagtg gaaaaaaaac aactttaagg aagataagat tatagagtta
     7321 aaacataagt tctatgaaga ggttagaaag ttttatgaaa aagaacatca aaatttaatt
     7381 aatgaaataa aagagaaaaa acttttaaat aatttttatc agtctttaat acaaggagtg
     7441 cataatatag gtttaattat gaatattttt gaaatttctt ggactaaaga aattatagaa
     7501 aaaaataata aaattttatc tactcaattc ccaaatttag atgatgcaat ggaattttta
     7561 cgtaaaaatc atttatatca aaaaactcca gaaggagaaa tttgtgagcg aagctatggt
     7621 gttttagtta gaataggaaa tttatggaaa tttgttcctt atgcgagatt tttcgagaat
     7681 gaaattttaa aattagaatt tgcttttgaa aatatgattg atcagcttaa aatatttgct
     7741 agcagcaaag aggaaaaagc ttatatagaa tattttgaaa aattaaaatt agcgttttgt
     7801 gaaaaagatg aagatagggt tataaaagct tggcaagaag ctgaatttgc ttggatgaaa
     7861 gtaaaatcac ctttacaagt gggacatcct ttagaatatt atgaagataa ttatactcat
     7921 gcggtggcat tagaatggga tataagaata gaagatgaaa atgattttga tgttttgaaa
     7981 tttggtagtg aaattaagga aagttttgaa catgtttata aaaatatagg acttgaagat
     8041 tgtgaattag aaaaagaagt tttatctaat atagaaaaaa ctcaacttta tatttgcact
     8101 ccgatgatat tttatggtgc tgaacttaaa ggtttattct cagctcaagt cgttccaaat
     8161 gatgagtttg taagttctaa ggcgggcaaa aaaatatttg cctttataaa ttttgtatat
     8221 gaaaatgcta aaacaaagcc ttttatgaaa atttctagcg aggtttttga taaagaattt
     8281 ttggattttg gaagaaatat tttattttat caggaaaaaa tttggaaaag ggtttatgaa
     8341 gtatcaacta taggccatga atttggtcat atatttttta ttgctaatga taccgaaaaa
     8401 acaatgaatc agagtggttt ttttaaaaat atagaagaat ataaagctac tacaggtgga
     8461 cttataaatt tcttttatca tgaacaagat gacttgataa tgcctgtttt tcatgaactt
     8521 ataaaaagag ctattggact tatttcttgg caaagggttg atgaagttag accttattat
     8581 acagaaggac ttattcatct tagtttgctt tttgaaagtg aagtattgat ttttgaaaat
     8641 aataatttga agataaattt tgatttaggg cattatgaaa aatttaaaga actaacttta
     8701 aaaaattatc atgaattagc aaaacactat gctttaagac ttgatgcaaa agagttttta
     8761 agtagatttt gtgaaattga agataatatt tttcttccta ttatgcctaa gtgtaaagaa
     8821 tttgttaaat tttattatga tttatacgag aaaattggta atgaaattga taatagcgga
     8881 gaatttgaaa gatataagaa aaaataataa agttttttga aaaaaactta aaaaaagctg
     8941 ttttttactt gatattgttt tttaaatatg ctaaaattag gcgtttcaat taaaacaaag
     9001 gagcttttat gactaaagca gatttcattt cattagttgc tcaaacagct gggctaacaa
     9061 aaaaagacgc tactactgct actgatgcag ttatttctac tattactgat gttttagcta
     9121 aaggtgatag catcagtttt attggttttg gtactttttc aactcaagaa agagctgcta
     9181 gagaagctag agtaccaagc acaggaaaaa caatcaaagt tcctgctaca agagttgcaa
     9241 aatttaaggt aggtaaaaac cttaaagaag ctgttgcaaa agcaagcggc aaaaagaaaa
     9301 aataaaactt cggctagata aattctagcc ttctttttta attaattcag atattttgta
     9361 tcttttattt actttatttt tttaaacttt tataaaacta tcattattaa acaaaaaagg
     9421 atattaaaat tatgaaagta catgaaaaag taagtgagct tataggaaat actcctatta
     9481 tacatttgaa aaaatttggt atcaatgttt ttgctaaatg tgaattttta aatcctagtc
     9541 attctataaa agatagagca gcttttgaaa tgattaaaga tgctttagat agtaaaaaaa
     9601 ttaatcaaga tactacaata gttgaagcaa ctagtggaaa tactggaatt tctttggcta
     9661 tgatttgtgc agatttggga cttaaattta ttgctgtaat gcctgaatct atgagtttag
     9721 aaagaagaaa aatgataaca ctctttggcg ctaggttaga attaactcct gcaaatttag
     9781 gaatgaaagg agcggttgat aaagcaaatg aaatattatt aaatactcca aattctttta
     9841 tggtttctca atttgaaaat atttcaaata aaaatgcgca ttgtaagaat acggctttag
     9901 aaattttaag agatttggat aatgaacttg atatttttgt agctggtttt ggaactggcg
     9961 gtactattag tggagttggg gaaatactaa aagaaaaatt agaaaaagtg catattgttg
    10021 gagtcgagcc tctaaattct ccattgctta gcaaaggtga agcgggaagc cataaaatac
    10081 aaggaatagg ggcgaatttt atacctgcta ttttaaataa agaagttata gatgaagtga
    10141 tcacggtaag taatgaagat gctataaata cagccaaaga acttgccaaa agtggtttaa
    10201 tggtaggtat atcaagtgga gcaaatgtat ttgccgcaag tatgctagca aagaaatttc
    10261 cagataaaag aattttaact atgttaaacg atacggctga aagatacctc tcaactgatc
    10321 tttttgctta agtataatta ttgagaattt agaaaaattc taagttctct taaaatttct
    10381 tgtggattta aatcgctaat ttctttataa aaatgacctt tttcatcaat aagataaagc
    10441 atattgctat gtgctataga ataacccata aaagaatcat ttagatctat tttttgatat
    10501 tgaacattat attgttttgt tattttttga agagtttttt catcttttgc aattaaggca
    10561 tctgcttttg ggtaaaagta tcgtaaccat tcgtttgtat tgcttaagtt gttatctcta
    10621 tttagatcta aagaaataaa aagaaggtga gccttaggat tattgatttg ctttaaggct
    10681 ttgcctacta aactaagagt tgccggacaa acatcagggc aataagtata tccaaaatag
    10741 ataataagct tatctccttt aaaatctttt agggtggttt cctcttttaa gtctgatttt
    10801 aagataaaat cataagaatt ttgatgattt ttaataaaaa atattacacc taaaataatg
    10861 gcaactataa ctataaacaa aataatattt tttttcattt ttttagctca aaatcaaaat
    10921 aaaaccctat gggtttatta ttatccataa attctaccct aaaacgcata gtatctaaaa
    10981 cgcaagtggc aagaactatt ttactttcat agtctgttga atttaatcga tgtattttag
    11041 gtttaatttc acccatatac atatttaatc cataaatttt aattcccaag ttgttataat
    11101 ttcctagatt tacaatcttt agatttgtaa catctaaaga ttgtaagggt ttgggattta
    11161 gggaaattaa gacttcttta ttattaaaac tatatgtgca gtctttaaca ttaagatcgc
    11221 aagtcaatgg ggtagaaaaa tcagcttttg ttattttttt agaatctttt attatataaa
    11281 aatcaaaaat aatatataaa ataacaataa caaaagcaaa agctaggata aaaataattt
    11341 ttctcattaa ttaaaattct ttagaatcaa tattttttaa ctctatgatt ttatgattat
    11401 taaattttaa atctaaattt accttcgtgt ctttaataat aggttttttt agttttaaaa
    11461 gcattatatg gtaacctcct gatttaagct ctgtgcttga atgagctttt ataataattt
    11521 caggaatttt ttgcatcatc atttttccat ctttatgtat atgtgtatgc agttcactga
    11581 cttcactgat atcgcttttg gcacttatta gagcaatatc cttatcagta ttattaaaaa
    11641 tggtaagaaa aatagcacta ttttgcgcat gaggtggagt ttgttttaca aaggcatttt
    11701 ttacctctat atcattaaca gcccaaagat ttacagcaaa aagagcacct aagagaagaa
    11761 tttttttcat attgtatcct tatttttata atattaaata tttgttcatt atatcaaaaa
    11821 atatttttat ttgaatataa aattttgaaa atttttcaat gtgtgttacc tgtttgaaaa
    11881 tttttttgca tagtaacatc aaaatcaaag aaaaaaccag ttggagcatt attgtttaaa
    11941 aattcaaccc taaatctaga atcatcggta atgcttctac ctataaaatt tataagaata
    12001 tcaccattaa ctatattaaa tttag
//
LOCUS       DAZBIH010000044        11961 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.044, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000044 DAZBIH010000000
VERSION     DAZBIH010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11961
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.044"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..373
                     /locus_tag="ACHFOB_001002"
     CDS             <1..373
                     /locus_tag="ACHFOB_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HFN5799813.1"
                     /translation="LNADIIISADNLPSVSKEFLQHNFKAPIGIVQKDKNSYEVYLSD
                     GTELEFDIDGTWKEIENKAFPFDLDFLPQNLANIIKNEFPNIKAREIERKINHYKIKL
                     DNDVKILIDFNGTILHKEIDD"
     gene            complement(381..1997)
                     /locus_tag="ACHFOB_001003"
     CDS             complement(381..1997)
                     /locus_tag="ACHFOB_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent metallopeptidase FtsH/Yme1/Tma
                     family protein"
                     /protein_id="HFN5799814.1"
                     /translation="MKNKKIILASFMVLCMLLGILYFKNEPKYIDENLYQSLLSQNLI
                     QKAVIDKDEIWLKAEGENYIIIKDGIDIKTLLSKVPVEVKKDNTLWVFFVLLIFIIAL
                     FISLGYFARKKELAKYPISNKNQNHTQAQNSNINLESSHIKPVISNITFNDVAGVDEV
                     KMELSELVDFLQNPKKYKEFGVKMPKGVLMVGPPGVGKTLIAKAVAGEAGVPFFYQSG
                     SSFVEIYVGMGAKRVRELFSKAKMMAPSIVFIDEIDAVGKARGEMSNVERDSTLNQLL
                     TQMDGFEDNSGVIVIAATNKIELMDPALLRSGRFDRRIFLSLPDFKDRLKILEIYMKD
                     KNNNVNLNKIAKASVGFSGAGLETLVNEAAINALRRNSALVEESDFYAVLNKVLLGKK
                     KILSFNDEEKKIQATYQAAKALSAYYFDIGFDKITLIEDRFKEYEHNIKSKSELINRI
                     KVYLAGSRAMRLIYNESYTNSQDDFLKIKELLDYMLSFDMLKEPNLNEQKKEMDEFLN
                     SMKDKILKLSELLLEKEKIEHDDVKNIMQV"
     gene            complement(2001..3251)
                     /gene="mtaB"
                     /locus_tag="ACHFOB_001004"
     CDS             complement(2001..3251)
                     /gene="mtaB"
                     /locus_tag="ACHFOB_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0061712 - tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (N(6)-L-threonylcarbamoyladenosine(37)-C(2))-
                     methylthiotransferase MtaB"
                     /protein_id="HFN5799815.1"
                     /translation="MKEKVFFKTFGCRTNIYDTELLKSYVKDYEIINDENKAQIIVVN
                     SCTVTNGADSGIKSYVNTMQKKGIKVILTGCGAVSKGKELLDKKQVFGVLGASNKDKI
                     NEFLGAKTSFYELGNLNFIDKDIVCEYENHTKAFVKIQEGCDFACSYCIIPSVRGKSR
                     SVDEKALLKQVEILGANGYSEIVLTGTNIGSYGLKNGTSLGKLLQKMGQISGIKRIRL
                     GSLEPAQLDESFLEILDEAWLERHLHIALQHTSEKMLRIMRRRSHTDNDLKLFNTIAS
                     KGYALGTDFIVAHPGESEELWQEALRNFKEFPLTHIHAFIFSPRNNTHSATMKDVING
                     TLAKERLNTLKSIVEKNNYEFRKKNQVSLEVLVENQKDGFFEGYDQFFNKIKIKSNKD
                     IAKEWIVISEYEVQEKSNFVNLKG"
     gene            complement(3248..4819)
                     /locus_tag="ACHFOB_001005"
     CDS             complement(3248..4819)
                     /locus_tag="ACHFOB_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HFN5799816.1"
                     /translation="MKKIIILTFFVVFAFGDVNRTIINNINEKINTLNTVISASIWNI
                     RYENFIKYQDINDELIILNLNLKKTSDIHQQEELKRKIANLEEQLSLLKEYKDLNFAQ
                     SLSAPDNIETLSKLTNPLAIIGAFSHIKKLKGEKEEYIFKFNDFKNLVDKIREKNSEL
                     KELVELKPSVENIEALKASDKKLEEFEQALNFASVSYSVYEKKIDEELSRVSAEIKVQ
                     SLRAVNILVAIVIVIAIAFMLKFIAKKYIKDSERYYTATKIINFININIIFLILLFAY
                     IENITYLVTILGFASAGLAIAMKDMFMSMLGWCVIIFGGSFRVGDRVKVFQNDTTYIG
                     DIIDISFLRITLYEELTLETYNKNRRSGRIIFIPNNYVFTNLLANYTHHGMKTVLDGI
                     DISVTFDSNLDKAQEIVENIVTRHAKGYTELARKNIARLQHEYSIKNPKVEPRFFMFF
                     EHWGMRISAWYMTNAYAALVLRSTISKEIIKEFNKHKDIKIAYPSQNLYLGNLNQNHF
                     EQHHENMHFHARNKD"
     gene            complement(4816..5871)
                     /gene="aroB"
                     /locus_tag="ACHFOB_001006"
     CDS             complement(4816..5871)
                     /gene="aroB"
                     /locus_tag="ACHFOB_001006"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HFN5799817.1"
                     /translation="MQVEVKLKENAYKVYIDELEELEFDSKVFILSNPKISGLHLKTL
                     LSKIKAKEIFIATVKDGEEYKNLSTMEEILNQMFNSKLDRKSVLISFGGGVISDMGGF
                     AASIYQRGIDFINIPTTLLACVDAAVGGKTGVNNNFGKNLIGTFYQPKAVYCESSFLK
                     TLSFRELAAGMAEFIKMAAMFDDSILDFIEKIDEKSFLNATCENEIFTQIIARSIELK
                     SRVVEQDEKESGLRMLLNYGHTFAHVIENFTDYKLYLHGEAVAIGMVMANQLALNLGL
                     LDKMQSQKIKDILLKFGLPISYKINNVDEFYEAFFMDKKSSNKKINFVLASPLGKGFI
                     KGDISKEDIIATLREFQ"
     gene            complement(5917..7317)
                     /locus_tag="ACHFOB_001007"
     CDS             complement(5917..7317)
                     /locus_tag="ACHFOB_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="COG3400 family protein"
                     /protein_id="HFN5799818.1"
                     /translation="MNNILIIIDGILAKHFLERLCFEKGLGYFFTVVCQNSEKNNLNI
                     SSEYIDLHYFDPTSTARLENIMSKDFKQAFIYMQDEFETKKSYEALRSLNPNLEIEIM
                     DFWGLSVNDTHANLADARMTLSRRFMDFLPDIALTAQYIGLGVGEIMEVKIPAGSIFA
                     YRHISSIQQKRWRIVLIYRNSKIYFVKPSFVLEPNDSILIVGDPVVLQSIFHNIRGKA
                     GQFPMPFGSNVFALIDMKNMNQNMQERVLDTTLKLTQKSNAKRFFIHVINPKLGVMYE
                     KLKKLSEDKEGVFFDYFNTDFKQISTWLQNNDIGLVVTDIKNFEKEKQAFFDLKIPIM
                     KVGEASFDELKEAIILSADESELENNANVITDLSKQLDFGVILYYYNPNSQNTTDMEE
                     YFRSLSKLYDKNIQIINKNDENPLLNLQYREDLLQFVSFQKELLNRDFGRNLSTNLNR
                     HYYKMRQNYQLFIPVE"
     gene            7347..8468
                     /gene="tgt"
                     /locus_tag="ACHFOB_001008"
     CDS             7347..8468
                     /gene="tgt"
                     /locus_tag="ACHFOB_001008"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008479 - tRNA-guanosine(34) queuine
                     transglycosylase activity [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HFN5799819.1"
                     /translation="MEFKLKHKDGMARVCEITTAHSTFLTPVFMPVGTVGAVKSLDAN
                     DMKNELDAKIILANTYHMYLRPTSKVVKDFGGLHGFTKFDRSFLTDSGGFQAFSLSKN
                     SKHFNEGIEFKSHIDGSRHLFTPKSVLDTQYDFNSDIMMILDDLVALPATKERVKISV
                     DRTILWAKEAITYHKSMQNKGIGIGQNIFGIIQGGTDYEERKRCALSLNEMPFDGLAI
                     GGLSVGEENALMYETVQNLNPYLDENRPRYLMGVGTPEDLVENVERGVDMFDCVMPTR
                     NARNGTFFTSFGKFNIKKAEFINDHEAIDPACSCYTCRNFSRGYLNHLFKAKELTFFR
                     LASLHNLHYYLELARKMREAILNNSFTQFKRNFYHLRGK"
     gene            8470..9237
                     /locus_tag="ACHFOB_001009"
     CDS             8470..9237
                     /locus_tag="ACHFOB_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HFN5799820.1"
                     /translation="MLELHENLKKILQAKNLETFYSEIYGQKIFVYVGLNLETWLFND
                     EKIYKLQNEEFKLSSIEEFSNFIKSILEDFKVQNTHFQNLLEHKEGIILKGGFVKNFY
                     KKSFVLRQKINKNLKQINLLSEAFNLLLSEQAQYKKHLKILNLSISILSKNTKEHLAR
                     VDTLYTLTSAIKNEKMNKSIYLLSILSSIFLPLNLIVGFFGMNTNNLFFKDSPYGTLY
                     IFSLICCILIVGFIFYHSKKTKEFDLDEGKKAKKQTK"
     gene            9290..9366
                     /locus_tag="ACHFOB_001010"
     tRNA            9290..9366
                     /locus_tag="ACHFOB_001010"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:9324..9326,aa:Arg,seq:gcg)
     gene            complement(9369..9818)
                     /locus_tag="ACHFOB_001011"
     CDS             complement(9369..9818)
                     /locus_tag="ACHFOB_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799821.1"
                     /translation="MVIFCAALALLLFLGMIAYLITSDGKKTIKKQKTSQKQHVTEKT
                     KKFDTDLDKMIIAASDVKLTDIELKELAKLYVQTHKLGSKTSKELDEATKKKLEFVSA
                     LAANINASAQTVSYLNKELKKISGSYKKEIDAYEHMGLAKRKIKEDK"
     gene            complement(9834..>11961)
                     /gene="ccsA"
                     /locus_tag="ACHFOB_001012"
     CDS             complement(9834..>11961)
                     /gene="ccsA"
                     /locus_tag="ACHFOB_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcsA"
                     /protein_id="HFN5799822.1"
                     /translation="PIMIELAGQKFFISWALSYEQLPFDIYLRDFVLDRYPGSMSPAS
                     YASEITVKNNNENFDYRIFMNNVLDYDGYRFYQSSYDQDEKGTVLSVNKDPGKIPTYI
                     GYFLLCLGMFMNFLNPHSRFRTLARLINKDTLKHTSVIISILLLSFGSEKTFAQDLNS
                     TLPVVNTNHAKALATLIVQKSADGRMVPFDTLSREILEKIHQSDSYKGQNSNAVMLSM
                     LVDVDKWQMEPFILMPQNQAVRDAIANILEIPSAKYISYKDFFDENNRYKLQKYVENA
                     NRKNPNARGVFDKEIIKLDERANVVNLVFSGELFKFIPVQNNPNNVWLAPFSAVTTLK
                     GDEGHIVLALIQNYFSAVENAFKDGNWTRADEGLKFIKEYQEKIGYKVMPSKTKVEME
                     IFSNKAEIFVKLAPVYLIAGFLLLILVFSKMVVPNLKISFIFKVVYVLNVLAFVIHTV
                     GLGLRAYLSGHAPWSNGYESMVYIAWALSLSGIFFSRKSPIALSLTSILSGVVLMVAH
                     LSEMNPQITNLVPVLNSYWLSIHVSVITASYGFLGLCALLGIFTLFLMCFLKKDGKYN
                     LNILRNITEATRINEMAMIFGLCLLTVGNFLGAIWANESWGRYWSWDSKETWALVSIL
                     VYAAILHLRMIPKYCNQFVFALWSMFAYWVIIMTYFGVNYFLTGLHSYAAGEAAQIPN
                     YVYWGFALMVVLALFARRKRNFVGKL"
BASE COUNT         4227 a         2041 c         1435 g         4258 t
ORIGIN      
        1 tttaaatgct gatataataa tttctgctga taatttgcca agtgtttcta aagaattttt
       61 acaacataat ttcaaagcac ctatagggat cgtacaaaaa gacaaaaatt cctatgaagt
      121 ctatcttagt gatgggacag aacttgaatt tgacatagat ggaacttgga aggaaattga
      181 aaataaagcc tttccttttg atctagattt tttacctcaa aatttagcca atatcattaa
      241 aaatgaattt ccaaatataa aagctagaga aatcgaaaga aaaatcaacc attacaagat
      301 taaacttgat aacgatgtaa aaattcttat agatttcaat ggaactatct tgcacaaaga
      361 aattgatgat taaaatataa tcaaacctgc attatatttt taacatcatc atgttctatc
      421 ttttcttttt caagcaaaag ctctgataat tttaaaattt tatccttcat agaatttaaa
      481 aattcatcca tttctttttt ttgttcattt aaatttggct cttttaacat atcaaaactc
      541 aacatataat caagcaattc tttaatcttt aaaaaatcat cttgtgaatt agtataactt
      601 tcattataaa tcaatctcat agctctagaa ccagccaaat aaacttttat acgattgata
      661 agctctgatt ttgattttat attatgctca tattctttaa aacgatcttc aatgagagtt
      721 attttatcaa atcctatgtc aaaataatac gcactcaaag cttttgcagc ttgataagtg
      781 gcttgaattt ttttctcttc atcattaaaa ctcaaaatct ttttcttgcc taaaagaact
      841 ttatttaata cagcataaaa atcactttcc tcaactaaag cactatttct tcttaaagca
      901 ttaatcgctg cttcattgac caaagtttca agtcctgctc cactaaaacc tacgcttgct
      961 ttagcgattt tatttaaatt gacattattg tttttatctt tcatataaat ttctaaaatt
     1021 ttaagtctat ccttaaaatc aggcaaagat aaaaaaattc tcctatcaaa acgccccgaa
     1081 cgcaataaag caggatccat aagttcgatt ttatttgtcg cagctataac tataacccca
     1141 ctattgtcct caaaaccatc catttgagtt aaaagttgat ttaaagtgct atctctttca
     1201 acatttgaca tttctcctct tgccttacct acagcatcta tttcatcgat aaaaactata
     1261 ctaggagcca tcattttagc ttttgaaaaa agctctctaa ctctttttgc acccatacct
     1321 acataaattt caacaaaact tgaaccactt tgataaaaaa atggcacccc tgcttctcct
     1381 gcaactgctt ttgctatcaa cgtttttcct acaccaggtg ggcctaccat taaaacacct
     1441 tttggcattt ttacaccaaa ttctttatat tttttaggat tttgtaaaaa atccacaagt
     1501 tcgcttagct ccattttaac ttcatcaaca cctgctacat cattaaaagt aatatttgaa
     1561 atcacaggtt ttatatggga actttctaaa tttatatttg aattttgagc ttgagtgtga
     1621 ttttgattct tatttgatat tggatattta gccaactctt ttttacgagc aaaataacca
     1681 agacttataa aaagtgcgat aataaaaata agtaaaacaa aaaacaccca aagcgtatta
     1741 tcttttttaa cctctacggg aacttttgat aaaagtgttt ttatatctat gccatctttt
     1801 ataattatgt aattttcacc ttctgcctta agccaaattt cgtctttatc aatcacagct
     1861 ttttggatta aattttggct taatagactt tgataaagat tttcatctat atatttaggt
     1921 tcatttttaa aatataaaat tcccaaaagc atacataaaa ccataaaaga tgctaaaatt
     1981 atctttttat ttttcattat ctagcctttt aaatttacaa agttagactt ttcttgtact
     2041 tcatattcag atataacgat ccattcttta gctatatctt tattactttt aattttgatc
     2101 ttattaaaaa actgatcata accctcaaaa aaaccatctt tttgattttc taccaaaact
     2161 tcaagtgaaa cttgattttt tttcctaaat tcataattat ttttttctac tatggatttt
     2221 aaagtgttta gcctttcttt agctaaagtt ccatttatca catctttcat ggtagcagaa
     2281 tgtgtgttgt ttctaggact aaaaataaaa gcatggatat gagtgagtgg aaattcttta
     2341 aaatttctta aagcttcttg ccatagctct tcactctcgc ctggatgagc tactataaaa
     2401 tccgtcccta aagcatatcc tttgcttgct atagtattaa aaagctttaa atcattatcc
     2461 gtatgtgatc ttcttctcat tatacgaagc attttttcac ttgtatgttg caatgcaata
     2521 tgcaaatgcc tttcaagcca agcttcatct aagatttcta aaaaactttc atcaagctgt
     2581 gcgggttcta aactacctaa ccttatgcgt tttatacctg aaatttgtcc cattttttgc
     2641 aaaagcttgc ctaaacttgt gccattttta agcccatatg aacctatatt agtccctgtt
     2701 aaaacaattt cactataacc attagctccc aaaatttcaa cctgttttaa aagagctttt
     2761 tcatccacac ttcttgattt tcccctcacg ctagggataa tacaataaga acaagcaaaa
     2821 tcacaacctt cttgaatttt cacaaaagct ttggtatgat tttcatactc gcaaactata
     2881 tctttatcaa taaaatttaa atttccaagt tcataaaaac ttgtctttgc tcctaaaaat
     2941 tcattgattt tatctttatt tgacgctcca agcactccaa aaacttgctt tttatctaaa
     3001 agctccttgc ctttgcttac agcaccacaa cctgtaagta taactttaat gccttttttt
     3061 tgcatggtat ttacataaga ctttatcccg ctatcagctc catttgtaac cgtgcaagaa
     3121 tttacaacga taatttgtgc tttattctca tcatttataa tctcataatc ttttacataa
     3181 ctttttaaaa gctctgtatc ataaatattt gtgcgacacc caaaggtttt aaaaaaaact
     3241 ttttctttca atctttattc cttgcatgaa aatgcatatt ttcatgatgt tgttcaaaat
     3301 gattttgatt taaatttcct aaatataaat tttgcgatgg ataagcaatt tttatatctt
     3361 tatgcttatt aaattctttt ataatctctt tactaatcgt acttcttaat accaaagccg
     3421 cataagcatt ggtcatatac catgcagaaa ttcgcattcc ccaatgttca aaaaacataa
     3481 aaaaccttgg ctccacttta ggatttttaa tactatattc atgttgtaaa cgagctatat
     3541 tttttctagc aagctcagta taacctttgg catggcgtgt tacaatattt tctacaattt
     3601 cttgtgcctt atcaagattg ctatcaaaag taacacttat atcaatgcca tcaagcacgg
     3661 ttttcatacc atgatgagta taattagcaa gcaaatttgt aaaaacatag ttattaggaa
     3721 taaatataat acgcccacta cgacgatttt tattataagt ttcaagtgta agctcttcat
     3781 aaagagtaat gcgtaaaaaa gaaatgtcta taatatctcc tatataggta gtatcatttt
     3841 gaaaaacctt tacacgatcc cctactctaa aacttccgcc aaaaataatc acacaccatc
     3901 caagcataga cataaacata tctttcatag caatagctaa gcctgcagaa gcaaaaccaa
     3961 gtatagttac aagataagta atattttcta tataagcaaa gagcaaaata agaaaaataa
     4021 tatttatatt aataaaatta ataatcttcg tagcagtata atatctttca ctatctttaa
     4081 tatatttttt agcaataaat ttcaacataa aagctatagc tataacaata acaatagcaa
     4141 caagtatatt tacagccctt aagctttgaa ctttaatctc agcacttact cgagaaagct
     4201 cttcatcaat ttttttctca taaacagaat aagaaacact agcaaaattt aaagcttgct
     4261 caaattcttc caacttttta tccgaagctt ttaaagcttc tatattctca acacttggtt
     4321 taagctcaac taattcctta agttctgagt ttttttccct gattttatct actaaatttt
     4381 taaaatcatt aaatttaaat atatactctt ccttttctcc ttttaatttc ttaatatgag
     4441 aaaaagctcc tataatagcc aaaggattag taagcttaga taaagtttct atattatcag
     4501 gggcgctaag actttgtgca aaatttaaat ctttatattc tttaagcaag ctcaattgct
     4561 cttctaaatt tgctatcttg cgtttaagtt cttcttgttg gtgaatatcg gaagtctttt
     4621 ttaaattaag atttaaaatg attaattcat catttatatc ttgatatttt ataaaatttt
     4681 cataacgtat attccaaata ctagcactga ttacagtatt taaagtatta attttctcat
     4741 ttatattatt aataatagtc cgatttacat caccaaaagc aaaaacaaca aaaaaggtta
     4801 aaataataat ttttttcatt ggaattctct taaagttgca attatatctt ctttagaaat
     4861 atcacctttt ataaaaccct tgcccaaagg actagcaaga acaaaattga tttttttatt
     4921 agagcttttt ttatccatga aaaaagcttc ataaaattca tctacattgt tgattttata
     4981 tgatattggc aaaccgaatt taagtaaaat atcttttatt ttttgacttt gcattttatc
     5041 caaaagccct aaatttaaag ccaattgatt tgccataacc atacctatag ccactgcttc
     5101 tccgtgtaaa taaagcttat aatctgtaaa attttctata acatgagcaa aagtatgacc
     5161 ataatttaaa agcattctaa gccctgattc tttttcatct tgttcaacaa cccttgattt
     5221 aagttctatg cttcttgcta taatttgagt aaaaatttca ttctcacaag tagcatttaa
     5281 gaaacttttt tcatcaattt tttctataaa atcaagtata ctatcatcaa acattgctgc
     5341 cattttaata aattcagcca tgcctgcagc aagttctcta aaactcaaag tcttcaaaaa
     5401 agaactctca caatatacag ctttaggttg ataaaaagta ccaataagat ttttaccaaa
     5461 attattatta acacctgttt ttccacctac tgctgcatca acacaagcta aaagtgtagt
     5521 aggaatattt ataaaatcaa tgcctctttg ataaatacta gcagcaaatc cgcccatatc
     5581 actaatcacg ccaccaccaa aacttataag cacgcttttt ctatccaatt tagaattaaa
     5641 catttggttt aaaatttctt ccatggtgct taaattttta tattcttcac catcttttac
     5701 agtggcaata aaaatttctt ttgccttaat tttagaaagt aatgttttca aatgaagacc
     5761 tgaaatctta ggatttgaaa gtataaaaac cttactatca aattctaatt cttcaagttc
     5821 atcaatataa accttataag cattttcttt taacttaact tctacttgca ttgaactact
     5881 ctttttgcgt ttattctatc acatttaatt aattatttat tctactggta tgaaaagttg
     5941 gtaattttgt ctcattttat aataatgcct atttaaattt gtacttaaat ttctgccaaa
     6001 atctctattt agtaattctt tttgaaaact cacaaattgt aacaaatctt cgcgatattg
     6061 caaatttaaa agagggtttt catcattttt attaataatt tgtatatttt tatcataaag
     6121 cttagataaa cttctaaaat actcctccat atctgtagta ttttgagaat ttggattata
     6181 ataatataaa ataactccaa aatcaagctg tttgcttaaa tcagtaatga catttgcatt
     6241 gttttcaagt tcactctcat cggcacttaa aataatcgct tctttaagct catcaaaaga
     6301 agcttcaccc accttcataa taggaatttt taaatcaaaa aaagcttgtt tttctttctc
     6361 aaaatttttt atatcggtta caactaatcc tatatcatta ttttgcaacc atgtggaaat
     6421 ttgtttaaaa tctgtgttga aataatcaaa aaacacacct tctttatcct cagaaagttt
     6481 ttttaatttt tcatacatta cccctaattt aggattgata acatgtataa aaaatctttt
     6541 tgcattgctt ttttgagtta attttaaagt agtatcaagc actctttctt gcatattttg
     6601 attcatattt ttcatatcaa ttaaagcaaa aacattactt ccaaaaggca taggaaattg
     6661 ccctgctttg cctcttatat tatgaaaaat actttgtaaa acaacaggat ctccaacgat
     6721 caaaatgcta tcatttggct ctaaaacaaa agatggtttt acaaaataaa tcttagaatt
     6781 tctataaata aggactatgc gccacctttt ttgttgtatt gaacttatgt gcctataagc
     6841 aaaaatagat cctgctggaa tttttacttc cataatctct ccaaccccaa gtcctatata
     6901 ctgagctgtt aaagcaatat ctggtaaaaa atccataaat ctacggctta aagtcattct
     6961 agcatcagct aaatttgcat gagtatcatt aacacttaac ccccaaaaat ccattatttc
     7021 tatttctaaa tttggattta aagaacgcaa agcctcataa ctttttttag tttcaaattc
     7081 atcttgcata taaataaaag cctgtttaaa atctttactc ataatatttt caagacgcgc
     7141 tgtgcttgta ggatcaaaat aatgcaagtc aatatactca ctagaaatat ttaagttatt
     7201 tttttcacta ttttgacaca ctactgtaaa aaagtaacct aagccttttt caaaacaaag
     7261 cctttctaag aaatgctttg ctaaaatacc gtctattata attaaaatat tattcatttt
     7321 aaactccaaa aaggaaatta taacaaatgg aatttaaatt aaagcataaa gatggaatgg
     7381 caagggtttg tgaaatcact accgcacaca gcactttttt aacccctgtt tttatgcctg
     7441 ttggcacagt aggagcggtt aaaagtcttg atgctaatga tatgaaaaac gagcttgatg
     7501 caaaaattat tttagcaaat acctatcaca tgtacttgcg tccaacttcc aaagtggtaa
     7561 aagattttgg aggtttgcat ggttttacga aatttgatag aagtttttta accgatagtg
     7621 gtggttttca ggctttttct ttaagtaaaa attccaaaca ttttaacgaa ggtatagaat
     7681 ttaaaagtca cattgatggg agtcgtcatc tttttactcc aaaaagtgtt ttagatactc
     7741 aatatgattt taactctgat attatgatga ttttagatga tttagtagcc ctacccgcaa
     7801 ccaaagaaag ggttaaaatt tctgttgatc gcactatact ttgggcaaaa gaggctatta
     7861 cttatcataa aagtatgcaa aataaaggta taggtatagg gcaaaatatt tttggtatta
     7921 tccaaggtgg tacagattat gaagaaagaa agcgttgcgc tttaagttta aatgaaatgc
     7981 catttgatgg tttagctata ggtgggctta gcgtgggcga agaaaacgcc ttgatgtacg
     8041 aaacagtcca aaatttaaac ccttatctag atgaaaatcg tccaagatat ttaatgggcg
     8101 taggaacgcc tgaagatttg gtagaaaatg ttgagcgagg agtagatatg tttgactgtg
     8161 tgatgccaac tagaaatgca agaaatggaa catttttcac aagttttgga aaatttaata
     8221 tcaaaaaagc agaatttatc aacgatcatg aagctataga tcctgcttgc tcatgttata
     8281 cttgtcgtaa tttttcaagg ggttatttaa accatctttt caaagctaaa gaacttactt
     8341 tttttcgttt ggcaagtttg cacaatctac attattatct tgaacttgca agaaagatgc
     8401 gtgaagcaat tttgaataat tcttttacgc aatttaaaag aaatttttat cacttaagag
     8461 gcaaataaaa tgctagaact acacgaaaat ctaaaaaaaa tcctacaagc aaagaattta
     8521 gaaactttct atagtgaaat ttatggacaa aaaatttttg tttatgtggg attaaatttg
     8581 gaaacttggc tttttaatga tgaaaaaatt tataaacttc aaaatgaaga atttaagctt
     8641 tctagcatag aagaattttc aaattttatt aaatccattt tagaagattt taaagtacaa
     8701 aatactcatt ttcaaaatct tttagaacac aaagaaggta ttatcttaaa aggtggtttt
     8761 gttaaaaatt tttacaaaaa atcctttgtg ttaagacaaa aaatcaacaa aaatctaaag
     8821 caaattaatc ttctaagcga agctttcaat cttttgctta gtgaacaagc acaatacaaa
     8881 aaacatttaa aaattttaaa tttatccatc agcatcttaa gtaaaaacac caaagaacat
     8941 ctagcaagag ttgatactct ttatacatta acaagtgcaa ttaaaaatga aaaaatgaat
     9001 aaaagtattt atcttttaag tatactttct tctattttcc tgcctttaaa tttgatcgta
     9061 ggattttttg gaatgaatac taataatctt tttttcaaag atagccctta tggtacactt
     9121 tatatttttt ctttgatttg ctgtattttg attgtaggtt ttatatttta tcattcaaaa
     9181 aagactaaag aatttgattt agatgaaggt aaaaaagcta aaaaacaaac aaaataagca
     9241 aaattttgct tattttaaga atatttatat ataattttaa cttatttttg cgctcatagc
     9301 tcagctggat agagcatttg attgcggttc aaaaggccag aggttcgaat cctcttgagc
     9361 gcaccatatt atttatcttc tttaattttt cttttagcta atcccatatg ctcataagca
     9421 tcaatttctt ttttgtaaga tccagaaatt ttcttaagtt ctttatttaa gtaacttact
     9481 gtttgtgcac ttgcattaat atttgcagcc aaagcagaaa caaattctag tttctttttt
     9541 gttgcttcat ctaattcttt agaagttttt gaaccaagtt tatgtgtctg cacataaagt
     9601 ttggcaagtt cttttaattc aatatccgtt agcttaacat cggaagcagc aattatcatt
     9661 ttatctaagt ctgtatcaaa ttttttagtc ttttcagtta catgctgctt ttggctagtt
     9721 ttttgctttt taattgtttt tttaccatca cttgtaataa gataagcaat catgcctaaa
     9781 aacaataaaa gcgctaaagc agcacaaaaa ataaccaaaa aaatatggct catttacagt
     9841 ttgcctacaa aatttcgctt ccttcttgca aaaagagcta aaaccaccat caatgcaaat
     9901 ccccaataaa cataattagg aatttgagcc gcttcgcctg cagcgtaaga atgaagtcct
     9961 gttaaaaagt aatttactcc aaaataagtc ataataataa cccaataagc aaacatactc
    10021 cataaagcaa acacaaattg attacaatat tttggaatca ttctaagatg caaaattgct
    10081 gcataaacca aaatactaac taaagcccaa gtttccttag aatcccaact ccaatatctc
    10141 ccccaacttt catttgccca aattgcacct aaaaaatttc ctacagtaag caaacaaagt
    10201 ccaaaaatca ttgccatttc attaattctt gtagcctctg taatatttct caaaatatta
    10261 agattatatt ttccatcttt cttaagaaaa cacattaaga acagtgtaaa tataccaagt
    10321 aaggcacaaa gtcctaaaaa tccataacta gcagtaataa cagatacatg aatactaagc
    10381 caataagaat tgagcacagg aacaagattt gtaatttgcg gattcatttc gcttaaatgt
    10441 gcaaccatta atacaacacc ggataaaata gaagttaatg acaaggctat aggacttttt
    10501 ctagagaaaa atatacccga caaagacaat gcccaagcta tatacaccat actttcatag
    10561 ccattactcc acggagcatg acctgataaa taagcacgaa gtccaagacc tactgtatga
    10621 attacaaaag ctaaaacatt taaaacatat accactttaa atataaaaga gatttttaaa
    10681 ttcggtacaa ccattttaga aaaaacaaga atcaaaagta aaaaacccgc aattaaatat
    10741 acaggagcga gtttaacgaa aatttcagcc ttattagaaa aaatttccat ttcaaccttg
    10801 gttttactag gcatgacttt atatcctatt ttttcttgat attctttgat aaatttcaaa
    10861 ccttcatcag ctctagtcca attaccatct ttaaaagcat tttccacggc actaaaataa
    10921 ttctgtatta aagccaaaac aatatgccct tcatccccct taagagtagt tacagcagaa
    10981 aaaggtgcaa gccaaacatt atttggatta ttttgaacag gaataaattt aaataattca
    11041 ccactaaaaa ctaaatttac aacattagct ctttcatcta gttttataat ttccttatca
    11101 aaaactcctc ttgcatttgg gtttttacga tttgcatttt caacatattt ttgaagttta
    11161 tatcggttat tctcatcaaa gaaatcttta taagaaatat atttagcgct aggaatttct
    11221 aaaatatttg caatagcatc acgaactgct tgattttgtg gcattaaaat aaaaggttcc
    11281 atttgccatt tatctacatc aacgagcatg gaaagcataa cagcgttaga attttgaccc
    11341 ttatagctat cactttgatg aattttttct aaaatttctc ttgatagcgt atcaaaaggc
    11401 accattcttc catctgctga tttttgaact attaaagtgg caagagcttt agcatgatta
    11461 gtatttacca caggtaaggt cgaatttaaa tcttgagcaa aagtcttttc agaaccaaaa
    11521 gatagtaata aaatagaaat aatcacactt gtatgtttta aagtgtcttt attaatcaat
    11581 cttgccaaag ttctaaatct agaatgtgga tttaaaaaat tcataaacat tccaagacaa
    11641 agcaaaaaat aacctatata agttggtatt ttacctggat ctttatttac agataaaaca
    11701 gtcccttttt catcttgatc ataagaactt tgataaaatc tatagccatc ataatctaaa
    11761 acattattca taaaaattct ataatcaaaa ttttcattat tattttttac ggtaatttca
    11821 cttgcataag aagctggaga catagaacct ggataacgat ctaatacaaa atctcttaaa
    11881 taaatatcaa aaggcaattg ttcataagaa agcgcccaag aaataaagaa tttttgacct
    11941 gcaagttcta tcataatagg t
//
LOCUS       DAZBIH010000045        11789 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.045, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000045 DAZBIH010000000
VERSION     DAZBIH010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11789
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.045"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..535)
                     /locus_tag="ACHFOB_001013"
     CDS             complement(<1..535)
                     /locus_tag="ACHFOB_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HFN5799823.1"
                     /translation="MNKILSLPEDLKQLKGVNYKKIKSCTFAKYTQTDTSHSTFVNVG
                     SHLLTFVRKGYKILHTASKDYKINSYETLFLKAGSYTLSNVGLSKGVYEAYLFFFDNA
                     FLIELIYKYKDFFKLDQKFQNYEIFWVKNDKILQGILESFSPHFEENTQILDPIVSLK
                     FEEIFLHLLLNKNIYFIS"
     gene            complement(532..1137)
                     /locus_tag="ACHFOB_001014"
     CDS             complement(532..1137)
                     /locus_tag="ACHFOB_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HFN5799824.1"
                     /translation="MWDKKIIAISDRKCVQIDFLKQIEKLAKAKVDAIVLREKDLSEF
                     EYYDLAKEVLSICAKQKVTCFLHFFDRECLKLGHRYFHAPLSLLRKEPKLTKYFHILG
                     TSVHSKEELLEAMSYKVNYAFVGHIFESSCKMGLEPKGLDFLKSLLEFSQIPLYAIGG
                     INAQNIENFKDINVVGVCMREILMKEKDLKKYLLECRQNLR"
     gene            complement(1127..2272)
                     /gene="thiH"
                     /locus_tag="ACHFOB_001015"
     CDS             complement(1127..2272)
                     /gene="thiH"
                     /locus_tag="ACHFOB_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA];
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-iminoacetate synthase ThiH"
                     /protein_id="HFN5799825.1"
                     /translation="MQDYMQYLPHMQEIKSEILNKVLSQVQSYDESQFSAKDVENALN
                     QTHLSIEHLKALLSSAAEDFIEELAFKSAKVKQKYFGNSISLFTPLYLSNYCNSKCVY
                     CGFQKGNKIARAKLNEAEIHEEMQAIAKSGLEEILMLTGEGREFASVEYIANACKIAR
                     EYFKVVGVEIYPMNEDEYKILHEKGCDYVTVFQETYNPLKYSKIHLAGEKRIFPYRFN
                     AQERALKAGMRGVAFAALLGIDDFRKDALATALHAHFLQQAYSHAEISISVPRLRPII
                     NNAKIHPKDVSEKRLLQVLCAYRLFLPFAGITISSRERIGFRDEVIKLGATKMSAGVS
                     VGIGEHKGEKKGDEQFEISDDRSVDEILAMLKRSNLQAVMSDSIYVG"
     gene            complement(2275..3051)
                     /locus_tag="ACHFOB_001016"
     CDS             complement(2275..3051)
                     /locus_tag="ACHFOB_001016"
                     /EC_number="2.8.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1990107 - thiazole synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiazole synthase"
                     /protein_id="HFN5799826.1"
                     /translation="MQENLKNDKLKIGKYEFDSRFILGSGKYSLELIKSAIEEAKAQI
                     ITLALRRANTGEIANILDYIPKNITLLPNTSGARNADEALRIARLSRELGCGELIKIE
                     VISDSRYLLPDNYETIKACELLAKEGFTPLPYMHADLYAARAMRDAGAAAIMPLAAPI
                     GSNKGLCAKEFIQILLNEIDLPIIVDAGIGSPSQACEAMQMGVSAVMVNTAIAEAKDI
                     ALMAKAFSLAVNAGRAAFLAGLASVSKAKASSPLTGFLRD"
     gene            complement(3054..3857)
                     /gene="thiF"
                     /locus_tag="ACHFOB_001017"
     CDS             complement(3054..3857)
                     /gene="thiF"
                     /locus_tag="ACHFOB_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine biosynthesis protein ThiF"
                     /protein_id="HFN5799827.1"
                     /translation="MMRVKFNGKELDTDFKTSLEFFENISKNENDVWIINGFATKENI
                     ALNENDELFCIEKNTLPPKDALDAMMRARHTPKLHDKLKNGRVAVCGLGGLGSHIAIN
                     LARSGVGYLKLIDFDVIEPSNLNRQAYRVSDLGKFKTEALKEQISEINPYISVEICTL
                     KIDEDSLKSLFKDIDIVCEAFDSAIAKAMIAQNFHRFYKDSVLICASGLAGYGDSNSI
                     QTRKIAKNFYVCGDLVNGAKLGNGLMAPRVNICAGHQSNLVLELLANKE"
     gene            complement(3854..4045)
                     /gene="thiS"
                     /locus_tag="ACHFOB_001018"
     CDS             complement(3854..4045)
                     /gene="thiS"
                     /locus_tag="ACHFOB_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfur carrier protein ThiS"
                     /protein_id="HFN5799828.1"
                     /translation="MIINGQKLELKELKFMDFIKEKGLKIELIALELNGEIIPKSEFE
                     NLILKENDKAEIVSFVGGG"
     gene            complement(4055..5152)
                     /gene="dapE"
                     /locus_tag="ACHFOB_001019"
     CDS             complement(4055..5152)
                     /gene="dapE"
                     /locus_tag="ACHFOB_001019"
                     /EC_number="3.5.1.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009014 - succinyl-diaminopimelate
                     desuccinylase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="succinyl-diaminopimelate desuccinylase"
                     /protein_id="HFN5799829.1"
                     /translation="MNAKEFLIELLKFKSVTPNDDGALNFIAMELSDFEAFFIEKEGI
                     KNLLLTKKFKDEGEHLAFGGHVDVVPAGEGWSNNAFAPVEKEGFIYARGAQDMKSGVA
                     AFVDAVKNADFKGARLSLILTSDEEGEAIYGTKAVLEWMQERDMLPDYAVVAEPTCVK
                     KIGDSIKIGRRGSINGKLLIRGKQGHVAYPEKCINPVHDFAPVLKLLAGFDLDPGSAE
                     FSPSKIVITDIRGGMEVCNVTPNDLKLMFNVRNSPDTSLEDVKSYVEKICHGLNYELE
                     LKQSSEAFLTNIDNKIVQKMNESVQKITHEVPELNTKGGTSDARYFAKYGVKVVEFGV
                     CNDRIHAIDERVSIEEFEKLCLVFKDLIENF"
     gene            complement(5156..5755)
                     /locus_tag="ACHFOB_001020"
     CDS             complement(5156..5755)
                     /locus_tag="ACHFOB_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family translocator"
                     /protein_id="HFN5799830.1"
                     /translation="MFDSFLSGVFLGFGVSVPFGPVNILILTYALKAFKNSIAVGLGA
                     FSIDMLYLFLLQFGLLNFLGNVIFMRSLAIFGFCFLTYMAYLMLRKKKESLNLEHKEF
                     KESLLKSYIKGAFLNGSNPFVIGFWLSAASVVLSSDHAYLMTLGLVVAILFWVSALAF
                     VVARYSHVFSAKVVFIINIISAIIIEYFALNLLYKTFLG"
     gene            complement(5748..6449)
                     /locus_tag="ACHFOB_001021"
     CDS             complement(5748..6449)
                     /locus_tag="ACHFOB_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent deacetylase"
                     /protein_id="HFN5799831.1"
                     /translation="MKNIMILSGAGLSAPSGLKTFRDNDGLWEEYDVMEVCSATGFRK
                     NPKKVLDFYDARRAQLQNVKPNHAHEKIAQLKEKWGKNLFVITQNVDDLLERAGCKDV
                     VHLHGFLPELRCLKCEGIFNIGYEKIIDKQCPKCKSKDLRHNIVMFEEQAPAYATLYS
                     LLNQTSLFISVGTSGAVLPVGRYASMCEKSILNIYEKDANLERYFDKIYTEDIISAID
                     KIALDIENFMKDGNV"
     gene            complement(6446..8656)
                     /locus_tag="ACHFOB_001022"
     CDS             complement(6446..8656)
                     /locus_tag="ACHFOB_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_function: GO:0030983 - mismatched DNA binding [Evidence
                     IEA];
                     GO_process: GO:0006298 - mismatch repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HFN5799832.1"
                     /translation="MMNDTKEELISKLDLNSYLEEFKALFARDKEIFLQGDSNLHFKR
                     IHELCEVEFPTMPELSNLDKALVHLSKQGILHLDEIFEFVKIFRYFEKLKKLKLGTNL
                     DSWLQKIEFVSGALELCLNFDEKGELKESLDERLVDLNAALRLKNENIIVEFKKFCHT
                     KALMPYLIDTQIHLISNLEALLVRGGFNHAIKAKIIGRSSGGGFYIVPLSVENLQNDI
                     EKIKNQKEEIYYEYAKNFSAFLAKNLPFLKFINTAFDLFDHYSARVLLAKKRDFEFVL
                     CDQSTDLVLKNFAHPALKNPKSVSLEFKKQVLIITGVNAGGKSMLLKSMLSAAFLAKH
                     LLPMHIKASESKIGAFKEFDAIIEDPQNVKNDISTFAGRMLHFSRLFSKKNLLLGIDE
                     IELGTDFEEAACLYSVLISKLITNNLKIIITTHHKHLVMLLAKNEQVELIAALYDEEL
                     SRPKYEFLKGTIGKSYAFETALRYQIPPNLVSEAKKLYGDDKENLEELVGKNINLELE
                     LKAKLENVEKKEQKVDEILLSLKDQKEKNEQEFRTSLRNLEFKFHKAIEEAKKTIQLK
                     DTKDKQRSLNKANELKKEIILPSMEQNEELRVGDFVKYEKIKGKIISISKNDAMVESD
                     GIKLRVPLKLLKKSTPTPKISPKTSISVAKPTNLSVSLDLHGLRSDEAISRLDKFISD
                     ALLAGFDEVLIYHGIGTGKLAFAVREFLKTHKSVKGFNDAPINQGGFGAKVVRL"
     gene            complement(8646..8996)
                     /locus_tag="ACHFOB_001023"
     CDS             complement(8646..8996)
                     /locus_tag="ACHFOB_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799833.1"
                     /translation="MSRVFLYFLIILILALITFALREKLGKKTKPFFGILLVIFIVLA
                     VFFEFENTQKSHLRTDIIVAFNQNKNILCKDINVSKAYFNYEFGTGSFISKDNNQSFN
                     SLIIDIKDCRLNDE"
     gene            complement(8989..10287)
                     /gene="murC"
                     /locus_tag="ACHFOB_001024"
     CDS             complement(8989..10287)
                     /gene="murC"
                     /locus_tag="ACHFOB_001024"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008763 - UDP-N-acetylmuramate-L-alanine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HFN5799834.1"
                     /translation="MMQNIHFIGIGGIGISALARFLKEKGFKISGSDLKESKITKELE
                     KEGVKVSIPHHKDNILNKDLVIYSAAIKEENPEFKYAKELGIKCLSRKEALPLILEDK
                     RVFAVAGAHGKSTTSSILASLLDDASVIIGAILKEFGSNMIYKESQNLVFEADESDSS
                     FLNSNPYLAIVTNAEAEHLDHYGNEVSKLHHAYTQFLDVAKIRVINAEDEFLKNYKNE
                     SIKLYPSKDIKNCTMCIENFKPFTSFELKDLGEFKVFGMGYHLALDASLAILAALNFL
                     DIETIRTRLKNYQGIKKRFDILHADENLVLIDDYGHHPTEIKATLSAAQEYVKLGGYK
                     KITAIFEPHRYTRLATNLKEFAKAFEGVDELVILPVYAAGEEPIELDLKAVFPKALFV
                     EDIKREGKFLVASKGQVFEEGLIIGFGAGDISNKLRQKNE"
     gene            complement(10351..>11789)
                     /locus_tag="ACHFOB_001025"
     CDS             complement(10351..>11789)
                     /locus_tag="ACHFOB_001025"
                     /EC_number="2.7.8.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008484 - sulfuric ester hydrolase
                     activity [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="LTA synthase family protein"
                     /protein_id="HFN5799835.1"
                     /translation="LRLFPLIALNLILIIVYVIALRGPFKHVAINVQNYSFSEYSVVN
                     DTMLNPIMAFSWALKQYKEEAALKVITPLKAQELKEKLFDYLHQSPINLKAEKNHPSV
                     FVNLMESFGLNLADFTNTEHNFLGSLDKHFKQDFLFKRFLSSSNGTIPSFANLFFVSP
                     FSNISTSKFQKTYLDLTPIAVYKKAGYKVIFVSAGNGSWQNIKNYLSILGVDEIIDEN
                     ILMKEYNGAKDSENGYGIADEFLYKKVYDLLQKNPHKTLIIALTISNHPPYKIPQNDL
                     PKLQNIPQTLLNMLPYEKDKQDNIIKAYTYANNEFGKFLDKVKQSPFKNSVIIAATGD
                     HRVREMSMDLNSQKAFAYSVPFYLYIPKDLQDNIYYDKDRVGSHKDIFPTLYALSLNN
                     VKYLSVGGRNMLARPSDEKLEFGINDAVWIDKKGIYSGGKGYYFESNDTLKDMNKAFN
                     LDGYTKDFDKFYRELNLYQLAERLGISK"
BASE COUNT         3873 a         2302 c         1492 g         4122 t
ORIGIN      
        1 aactaataaa ataaatattc ttatttaaaa gcaaatgtaa aaaaatctct tcaaatttca
       61 aactcactat aggatctaaa atttgcgtat tttcttcaaa atgcggtgaa aaactttcca
      121 aaattccttg caaaatctta tcatttttta cccaaaaaat ttcatagttt tgaaactttt
      181 gatctagttt aaaaaaatct ttatacttat aaataagctc aattaaaaat gcattgtcaa
      241 aaaaaaataa ataagcttca taaactcctt tactaagtcc tacattgctt aaagtatagc
      301 tcccagcttt taaaaacaaa gtttcataag agttaatctt ataatctttt gatgcggtgt
      361 gtaaaatttt atatcctttg cgaacaaaag ttaaaagatg acttcctaca ttaacaaaag
      421 tagaatgcga agtatccgtt tgtgtatatt tagcaaaagt gcaagattta atttttttat
      481 aattgacacc ttttaattgc tttaaatctt ctggtaaaga aagaatttta ttcatcgtaa
      541 attttgccta cattctaaaa gatacttttt aagatctttt tctttcatta aaatttcacg
      601 catgcaaaca cctactacat ttatatcttt aaaattttct atattttgag cattgatacc
      661 gcctatagca taaagtggaa tttgactaaa ttcaagcaag gattttaaaa aatcaagccc
      721 tttaggttct aaacccatct tgcaagaact ttcaaaaata tgccctacaa aagcataatt
      781 taccttatag ctcatcgcct ctaaaagctc ttctttgcta tggactgaag taccaagtat
      841 atgaaaatat tttgttaatt taggttcttt tcttagcaaa gaaagcggtg cgtgaaaata
      901 acgatgtccc aattttaaac actccctatc aaaaaaatgc aaaaaacaag tcactttttg
      961 ctttgcgcaa atgcttaaaa cttcttttgc taagtcataa tactcaaatt cgcttaaatc
     1021 tttttctctt aaaactatag catctacctt agccttagca agtttttcaa tctgctttaa
     1081 gaaatctatt tgcacacatt ttctatcact tatagcgatg atttttttat cccacataga
     1141 tactatcgct catcacagct tgtaaattgg atcttttaag catagctaaa atttcatcta
     1201 cacttctatc atctgaaatt tcaaactgct catcaccctt tttctcaccc ttatgctcac
     1261 ctatacccac actcactcct gcactcattt tagtagcacc aagcttgata acctcatctc
     1321 taaaacctat tctttcacga cttgaaatgg taatgcccgc aaaaggcaaa aagagtctat
     1381 aagcacaaag tacttgcaaa aggcgttttt cgcttacatc tttaggatgg attttggcat
     1441 tattgataat aggtcttaaa cgcggcactg aaatagaaat ttcagcatgc gaataagctt
     1501 gttgtaaaaa atgtgcatga agcgccgtag caagagcgtc ttttctaaaa tcatctatac
     1561 ccaaaagtgc cgcaaaagcc actccacgca tacccgcttt taaagctctt tcttgagcat
     1621 taaagcgata aggaaaaatg cgtttttcac cagctaaatg aattttagaa tattttagag
     1681 gattgtaagt ttcttgaaaa acagtcacat aatcacaacc cttttcatgc aaaattttat
     1741 attcatcttc attcatagga taaatttcaa cgcccacaac cttaaaatac tctctagcta
     1801 ttttacaagc atttgctata tattctacac ttgcaaactc cctgccctcg cctgttagca
     1861 ttaaaatttc ttctaaacca cttttagcaa tggcttgcat ttcttcgtga atttcagctt
     1921 catttagctt agctcttgcg attttattac ctttttgaaa accacaataa acacatttag
     1981 aattacaata atttgacaaa taaagtgggg taaaaagaga gatagaattt ccaaaatatt
     2041 tttgcttgac tttagcggat ttaaaggcta attcttctat gaaatcttct gctgcacttg
     2101 aaagcaaggc ttttaaatgc tctatgctta aatgtgtttg atttaaagca ttttcaacat
     2161 ctttagcgct aaattgactc tcatcatagc tttgaacttg acttaaaacc ttatttaaaa
     2221 tttcgctttt tatttcctgc atgtgaggta aatactgcat ataatcttgc ataatcaatc
     2281 ccttaaaaag cctgttaatg gagaacttgc tttagcttta ctcacacttg ccaaacctgc
     2341 taaaaaagcc gctcttcccg catttactgc caaagaaaaa gctttagcca tcaaggctat
     2401 atctttagct tcagctatgg ctgtatttac catcaccgca cttactccca tttgcatagc
     2461 ttcacaagct tgtgaaggac ttccaatacc cgcatctaca atgataggca aatcaatttc
     2521 attaagcaaa atttgtataa attccttagc acataagcct ttattactcc caataggcgc
     2581 tgctaaaggc atgatagccg cagctccagc atcacgcata gctctagctg cgtaaagatc
     2641 agcatgcatg taaggtaagg gtgtaaaacc ctctttagct aaaagctcgc aagctttaat
     2701 cgtttcataa ttatcaggca acaaatacct actatcgctt atcacttcta tcttgataag
     2761 ttctccacaa ccaagctctc ttgaaagcct tgcaatgcgt aaagcttcat cggcgtttct
     2821 tgcgcctgaa gtgttgggta aaagtgtgat atttttaggg atataatcaa gtatattagc
     2881 aatttcccct gtatttgcac ggcgtaaggc tagagtgata atctgtgctt tagcttcttc
     2941 tatagctgat tttataagct ctagcgaata ttttccagaa cctaaaataa atcttgaatc
     3001 aaactcgtat ttgcctattt ttaatttatc gttttttaaa ttttcttgca tttttactcc
     3061 ttatttgcta aaagctctaa aacaaggtta ctttgatgtc ctgcgcaaat atttaccctt
     3121 ggcgccataa gtccatttcc tagcttagca ccatttacca aatccccaca cacatagaaa
     3181 tttttagcaa tttttcttgt ttgtatgctg ttgctatcac catagcccgc aagccctgaa
     3241 gcacagatta aaacactatc tttgtaaaat ctatgaaaat tttgcgctat catcgctttt
     3301 gcgatagcac tatcaaaggc ttcacaaact atatctatat ctttaaacaa agattttaaa
     3361 ctatcctcat cgatttttaa ggtacaaatt tcaacgctga tataaggatt aatttcgcta
     3421 atttgctctt ttaaagcttc ggttttaaac ttgcccaaat cacttacacg ataagcctga
     3481 cgatttaaat tactaggctc aatcacatca aaatcaatca actttaaata ccccactcca
     3541 cttcttgcca aatttatcgc tatatgtgat ccaagtccgc ctaaaccaca caccgccacg
     3601 cgcccatttt taagtttatc gtgaagcttt ggtgtatgtc ttgctctcat catagcatct
     3661 agtgcgtctt ttggaggtaa agtatttttt tctatacaaa aaagctcatc attttcattt
     3721 aaagcgatat tctcttttgt tgcaaaacca ttgataatcc atacatcatt ttcatttttg
     3781 ctgatatttt caaaaaattc caaacttgtt ttaaagtctg tatcaagttc tttgccattg
     3841 aattttactc tcatcatcca cctcctacaa aacttacgat ttcagcttta tcgttttctt
     3901 ttaaaatcaa attttcaaat tcactcttag gtataatctc tccatttaat tccaaggcga
     3961 taagttctat tttcaagcct ttttctttga taaaatccat aaatttaagc tcttttaact
     4021 caagcttttg tccattgata atcattctaa acctttaaaa attttctatc aagtctttaa
     4081 aaacaagaca aagtttttca aattcttcta tacttaccct ttcatcaata gcgtgaattc
     4141 tatcattaca aaccccaaat tccactacct ttacaccgta ttttgcaaaa taccttgcat
     4201 cacttgtgcc gcctttagta ttaagctctg gcacttcatg ggtgattttt tgaacgcttt
     4261 cattcatttt ttgaacgatt ttattatcga tatttgtcaa aaaagcttcg cttgattgtt
     4321 ttagctctaa ctcatagttt aaaccatgac aaattttttc tacataactt tttacatctt
     4381 ctaagcttgt atcaggggaa ttgcgaacat taaacataag ttttaaatca tttggcgtaa
     4441 cattacacac ctccatacct ccgcgaatat cagttataac gatttttgaa ggactaaatt
     4501 cagcacttcc aggatcaaga tcaaaacccg ctaaaagctt taaaactggc gcaaaatcat
     4561 gcacaggatt gatacatttt tcaggataag caacatgccc ttgttttcca cggattaaaa
     4621 gctttccatt aatagaacca cgacgcccta ttttaatact atcgccgatt tttttaacgc
     4681 aggttggctc ggcaaccaca gcataatcag gtagcatatc tctttcttgc atccattcta
     4741 aaacagcctt agttccatat atagcttcgc cttcttcatc acttgttaaa ataaggctaa
     4801 gtctagctcc tttaaaatcc gcattcttta ccgcatctac aaaggctgct actccgcttt
     4861 tcatatcttg agcacccctt gcatagataa agccttcttt ttccacaggc gcaaaagcat
     4921 tattactcca accctcgcct gcaggcacca catctacatg cccaccaaaa gctaaatgct
     4981 cgccttcatc tttaaatttt ttagtgagta aaaggttttt aatgccttct ttttctataa
     5041 aaaaagcttc aaaatcactc agttccatag cgatgaaatt taaagctcca tcatcatttg
     5101 gcgtaacaga tttaaatttt aaaagttcga ttaaaaattc ttttgcattc attttttatc
     5161 ctaagaaagt tttatataat aaattaagag caaaatactc tataattata gctgaaatta
     5221 tattgattat aaaaacaact tttgcactaa aaacatgact atatcttgcc accacaaagg
     5281 ctaaagcact tacccaaaaa agtatagcca caacaagccc taaagtcatc aaataagcat
     5341 gatcactact taaaaccaca cttgcagcgc taagccaaaa tcctatcaca aaaggatttg
     5401 aaccatttaa aaaagctccc ttaatataac ttttcaaaag actttcttta aattctttat
     5461 gctctaaatt taagctttct ttcttttttc ttagcatcaa atacgccata taagttaaaa
     5521 aacaaaaacc aaaaatcgcc aaagaacgca taaaaataac attacctaaa aaatttaaaa
     5581 gcccaaattg aagcaaaaaa agataaagca tatctatgct aaatgctcca agtcctacag
     5641 ctatggaatt tttaaaagct tttagtgcat aagttaaaat caaaatattt acaggtccaa
     5701 aaggcacact cactccaaag cccaaaaaaa ctccacttaa aaaagaatca aacattacca
     5761 tctttcataa aattttctat atcaagtgcg attttatcaa tagcgcttat aatatcttca
     5821 gtgtagattt tatcaaaata ccgctctaaa ttcgcatctt tttcgtagat atttaaaata
     5881 cttttttcgc acattgaagc ataacgccct acaggcaaaa ccgccccact tgtgcctacg
     5941 ctgataaaaa gcgaagtttg atttagcaaa gaataaagcg tagcataagc aggggcttgc
     6001 tcttcaaaca tgactatatt gtgtcttaaa tccttacttt tgcattttgg acattgttta
     6061 tctatgattt tttcatagcc tatattaaaa attccttcac attttaggca acgaagttcg
     6121 ggcaaaaagc catgcaaatg tactacatct ttacaccctg cacgctctag caaatcatct
     6181 acattttgcg tgatgacaaa aaggttttta ccccattttt cttttaactg tgcgattttt
     6241 tcatgggcgt gatttggctt tacattttga agttgtgccc ttcttgcatc gtaaaaatca
     6301 agtacttttt taggattttt tctaaaacct gttgcagagc aaacctccat cacatcgtat
     6361 tcttcccaaa gtccatcatt atctctaaaa gttttaagcc cacttggagc agacaaaccc
     6421 gctccgctta atatcataat gtttttcata atctcaccac cttagcacca aaaccacctt
     6481 gattgatcgg tgcgtcatta aagcctttga cacttttgtg agtttttaaa aactctctta
     6541 ccgcaaaggc aagctttcct gtgcctatgc catgatagat caaaacctca tcaaatcctg
     6601 caagcaaagc atctgaaata aatttatcaa gccttgaaat agcctcatca ctcctaagcc
     6661 cgtgcaaatc caagctaacg ctaagattag tcggttttgc cacactaatg cttgtttttg
     6721 gacttatttt aggtgtagga gtgctttttt taagcagttt taaaggcaca cgaagtttga
     6781 tcccatcgct ttcaaccata gcatcgtttt tagaaatgct tatgatttta cccttaattt
     6841 tttcatattt tacaaaatcc cccacacgca attcttcgtt ttgctccata cttggcaaga
     6901 tgatttcttt tttaagttca ttggctttat taaggcttct ttgcttatct tttgtgtctt
     6961 taagctgtat ggttttctta gcttcttcta tggctttgtg aaatttaaat tctaaatttc
     7021 tcaaactcgt acgaaattct tgttcatttt tttctttttg atcttttaaa gaaagtaaaa
     7081 tttcatcgac tttttgctct tttttctcaa cattttcaag cttagctttt agttctaatt
     7141 caagattgat atttttacct acaagttcct ctaaattttc tttatcatcg ccataaagct
     7201 ttttagcctc actaactaaa ttcggcggaa tctgataacg caaagccgtt tcaaaggcat
     7261 aagattttcc tatagtacct tttaaaaact cgtattttgg gcgtgaaagc tcttcatcat
     7321 ataaagcagc gatgagttca acttgctcat tctttgctaa aagcatgaca aggtgtttgt
     7381 ggtgggtggt gatgatgatt ttaagattat tagttatgag ttttgaaatt aacacactat
     7441 acaaacaagc cgcttcttca aaatctgttc caagctctat ttcatcgata cctaaaagca
     7501 aatttttctt agaaaaaagc ctagaaaaat gcaacattct tcctgcaaaa gttgaaatgt
     7561 catttttaac attttgcgga tcttctataa tagcgtcaaa ttctttaaaa gcaccgattt
     7621 tactttcact tgctttgata tgcataggca aaagatgttt agctaaaaat gctgcgctta
     7681 gcatggattt taaaagcatg gattttccgc ctgcatttac ccctgtgatg attaaaactt
     7741 gttttttaaa ttccaaactc acgctttttg gattttttaa agcaggatga gcgaaatttt
     7801 taagaaccaa atccgtactt tgatcacaca aaacaaattc aaaatccctt tttttagcaa
     7861 gtaaaaccct agcactataa tgatcaaaaa gatcaaaggc tgtattgata aattttaaaa
     7921 aaggtaggtt ttttgctaaa aaagctgaga aatttttagc gtattcataa taaatttctt
     7981 ctttttgatt tttgattttt tctatatcat tttgcaaatt ttcaacactt aaaggcacga
     8041 tataaaagcc accgccacta cttctaccta tgatttttgc tttaatggcg tgattaaacc
     8101 ctcctcttac aagcaaggct tcaagattgc ttataagatg gatttgtgta tcgataagat
     8161 aaggcatcaa agcttttgta tggcaaaatt tcttaaactc aactattatg ttttcatttt
     8221 ttaatcttaa agcagcatta agatctacaa gtctttcatc taaactttct tttaattccc
     8281 ctttctcatc gaaattcaaa caaagctcca aagccccgct aacaaattct atcttttgca
     8341 accaagagtc taaatttgtt cctagtttta atttttttag cttttcaaaa taacgaaaaa
     8401 tttttacaaa ttcaaaaatt tcatctaaat gtaaaattcc ttgcttgctt aaatgcacta
     8461 aggctttatc aagattgcta agctctggca tagtaggaaa ttccacctcg caaagctcat
     8521 gtatacgttt aaaatgaaga ttagaatctc cttgtaaaaa aatctcctta tctcttgcaa
     8581 aaagggcttt aaactcttct aaatagctgt ttaaatcaag ctttgagatc aattcttctt
     8641 ttgtatcatt catcatttaa cctacaatct ttaatatcta tgattaaaga attaaaactt
     8701 tgattattat cctttgaaat aaaacttcct gtaccaaatt cataattaaa atacgcctta
     8761 gaaacattga tatctttaca taaaatattt ttattttgat taaaagctac gataatatct
     8821 gttcttaaat gacttttttg tgtgttttca aattcaaaaa atactgctaa aacaataaaa
     8881 atcacaagta aaataccaaa aaaaggtttg gtttttttgc ctaatttttc acgcaaagca
     8941 aaagtgatta aggctaaaat taaaataatt aaaaaatata aaaaaaccct actcattttt
     9001 ttgccttaat ttattactga tatctcctgc accaaaacct ataataagcc cttcttcaaa
     9061 aacctgtccc ttggaagcta ctaaaaattt accctctctt ttgatatctt ctacaaataa
     9121 agccttagga aaaaccgctt ttaaatcaag ttctataggc tcttctcctg cagcataaac
     9181 aggtaaaatt acaagctcat caacaccttc aaaagccttt gcaaattcct ttaaatttgt
     9241 agccaaacgc gtgtagcggt gaggttcaaa gatagctgtg atttttttat atccacctaa
     9301 ttttacgtat tcttgtgctg cgcttaaagt cgcttttatt tcagtaggat gatgaccata
     9361 atcatcgatt aaaaccaaat tttcatcagc atgtaaaata tcaaaacgct ttttaatacc
     9421 ttgataattt ttaagcctag ttcttatcgt ttctatatct aaaaaattta gagccgccaa
     9481 aatcgccaaa gacgcatcaa gagctaaatg atatcccata ccaaaaacct taaattcacc
     9541 taaatctttt aactcaaaac ttgtaaaagg tttgaaattt tctatacaca tggtgcagtt
     9601 tttgatatct ttgcttggat aaagtttgat tgactcattt ttataatttt tcaaaaactc
     9661 atcttcagca ttaatcacgc gaattttagc cacatctaaa aactgcgtat aagcatgatg
     9721 gagttttgaa acttcattgc cataatgatc taaatgctct gcttctgcat tagtaactat
     9781 agccaaataa ggatttgaat ttaaaaaaga actatcgctc tcatcagctt caaaaacaag
     9841 gttttggctt tctttataaa tcatatttga accaaattct tttaaaatcg ctccgataat
     9901 cacagaagca tcatcaagca aagaagctaa aatacttgaa gtcgtacttt ttccatgtgc
     9961 tcctgcaact gcaaaaacgc gcttatcttc taaaataaga ggtaaagcct ctttgcgtga
    10021 aaggcattta atgcctaatt ctttagcgta tttaaattca ggattttctt ctttgatagc
    10081 agcagaataa ataactaaat ctttgtttaa aatattgtct ttatgatgag ggatgctgac
    10141 cttaacccct tctttttcta gttctttagt gattttactc tctttaagat cacttccgct
    10201 aattttaaaa cctttttctt ttaaaaatct tgctaaagcg gaaattccta taccgcctat
    10261 gccgataaaa tggatatttt gcatcattta aacctttata ctttaaaggc taaattttag
    10321 cactttttta ctaaaaagaa aatataaatc ctattttgaa atgcctaaac gctcggctaa
    10381 ttgatataaa tttaactctc tataaaattt atcaaagtct ttagtataac catcaaggtt
    10441 aaaagcttta ttcatatctt ttaaagtatc attactttca aaataatacc ctttaccgcc
    10501 actataaata ccttttttat caatccatac agcatcgttg atcccaaatt ctaatttctc
    10561 atcacttggt cttgctaaca tatttcttcc gcctacgctt aaatacttga cattatttaa
    10621 acttaaagca taaagagttg gaaaaatatc tttatgagat cctacacgat ctttatcata
    10681 ataaatatta tcttgcaaat ccttaggaat ataaagataa aaaggtacac tataagcaaa
    10741 agctttttgg gaatttaaat ccatactcat ttcgcgtact ctatgatctc cagttgctgc
    10801 tataataaca ctattcttaa atggactttg ttttacttta tctagaaatt ttccaaattc
    10861 attatttgca taagtataag ctttgataat attatcttgt ttatcttttt cataaggaag
    10921 catattaagc aaagtttgtg gaatgttttg taattttggc aaatcatttt gtggaatttt
    10981 ataaggtgga tgattggata tggtaagagc aattataagg gttttatgtg gatttttttg
    11041 aagcaagtca taaacttttt tatataaaaa ctcatcagct atcccataac cattttcact
    11101 atcttttgct ccattatact ctttcattaa aatattttca tctataatct catctactcc
    11161 caaaatactg agataatttt taatattttg ccaagatcca ttacctgcac ttacaaaaat
    11221 caccttatat cctgctttct tataaacagc aataggtgtt aaatccaaat aagttttctg
    11281 aaatttactt gtagaaatat tagaaaatgg acttacaaaa aataagtttg caaaacttgg
    11341 tatagttcca ttactagaac tcaaaaagcg tttgaataaa aaatcttgct taaaatgttt
    11401 atctaatgaa cctaaaaaat tatgttctgt atttgtaaaa tcagccaaat taagcccaaa
    11461 actttccatt aagttaacaa atacactagg atgattcttt tcagctttta gatttatagg
    11521 actttgatgc aaataatcaa aaagtttttc tttaagttct tgtgctttca aaggtgtgat
    11581 aaccttcaaa gccgcttctt ctttatattg ttttaaagcc caagaaaatg ccataattgg
    11641 atttaacatt gtatcattta caacactata ctcactaaaa gaataatttt gtacatttat
    11701 agccacatgc ttaaaggggc cccttaaggc tataacataa acaataatta atattaaatt
    11761 taaagctatc aagggaaata atcttaaat
//
LOCUS       DAZBIH010000046        11329 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.046, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000046 DAZBIH010000000
VERSION     DAZBIH010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 11329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11329
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.046"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1190)
                     /locus_tag="ACHFOB_001026"
     CDS             complement(<1..1190)
                     /locus_tag="ACHFOB_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HFN5799836.1"
                     /translation="MRIFGIILLSFCLCFASILSLNEAFNVKSNSYNNSISIDIELGK
                     DIYLYSNKLKLYINEKDISSLINLPQSSTRGNENVYYQKLNLALPNLLLEHFAKNTTN
                     LIKLEFQGCSEQGLCYNPQTWYFDLISKKDAFEISKPYKTQKTDKKTKIESEESSIAN
                     FLATDNFFWILLSFFGYGLLLSLTPCILPMIPILSSLIVAKSNAKFSKKYSFFLSFIY
                     VFFMSLAYAIAGVIASFLGASIQGILQKPIILILFALIFIAFAFAMFGAFRFELPLRF
                     QTFIHKKSEKGKGVLGIAIMGFLSALIVGPCVAAPLAGALIYIANTGNALLGGSALFI
                     MSFGMGIPLLFIGLGLGFIKPGFWMEKVKIFFGFVMLAMAIWILSRIIEENYILIAYG
                     ILGV"
     gene            1285..2166
                     /gene="ppk2"
                     /locus_tag="ACHFOB_001027"
     CDS             1285..2166
                     /gene="ppk2"
                     /locus_tag="ACHFOB_001027"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008976 - polyphosphate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006793 - phosphorus metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyphosphate kinase 2"
                     /protein_id="HFN5799837.1"
                     /translation="MQENNSPKTQAVVKKNEIYVSVKRKKSTIEYEKDLKNLQIELLK
                     FQNHVKAKGLKVLILIEGRDAAGKGGAIKRLIEHLNPRGCRVVALEKPSDVEKTQWYF
                     QRYIAHLPSAGEIVIFDRSWYNRAGVEPVMGFCTPQQHKDFLREVPLFENMISNSDII
                     FFKFYFSVSKDEQKKRFEKRRSDPLKQYKLSPVDQKSQELWDKYTLAKYSMLLASNTP
                     TCPWTIISSDDKKKARLNLLRFILSKVEYPNKKTGDFSKIDAKLVRSGEEEIRKMEAN
                     LEKLDSKKADEKIKDLD"
     gene            2175..3365
                     /locus_tag="ACHFOB_001028"
     CDS             2175..3365
                     /locus_tag="ACHFOB_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20 family metallopeptidase"
                     /protein_id="HFN5799838.1"
                     /translation="MQKLVENLALKYYDKVVDLRHQIHMHPELEFEEENTARLVCKIL
                     DEFGIKYQKNIAKTGILATIEGKKKSQKKPKCVLLRADMDALPVQEKTNLSYASKIDG
                     KMHACGHDGHTAGLLGAALILNELKDEFCGTIKFMFQPAEEGSGGAKPMIESGVLENP
                     YVDAVFGCHLWGSLLENTAQIVSGEMMAGTDIFDLEFIGRGGHGAHPHTCIDPIIMAT
                     QFVNNIQSVVSRRLAPYEAGVITVGQICAGTTYNVIPINAYLKGTVRFLNDKTQDILK
                     SSLEEVAAATAKSNGGDYKLKYTKEFPPLINDEKAALIARKAFAKVLGEENIIVSSKP
                     DMGAEDFAFLTRERMGAYVFVGISKDLNHPALHHSSTFCWDDENLKVLMQGDVMMALE
                     FLNL"
     gene            3444..4616
                     /locus_tag="ACHFOB_001029"
     CDS             3444..4616
                     /locus_tag="ACHFOB_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_function: GO:0042802 - identical protein binding
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="efflux RND transporter periplasmic adaptor
                     subunit"
                     /protein_id="HFN5799839.1"
                     /translation="MKKKVILIVLIAILGSVGAYFIFFNNDEKISYLTQKIQKKDISQ
                     TIEAVGKVYAKDQVDVGAQVSGQIIKLYVDVGTHVKQGDLIAQIDKDKQQNDLDITKA
                     QLESAKANLESKKVALEIASKQYQREQKLYAAKASSLENLETQKNNYYTLKANVAELN
                     AQVVQLEITLKNAQKDLGYTTITAPMDGVVINVAVDEGQTVNANQNTPTIVRIANLDE
                     MEVRMEIAEADVSKIKVGTELDFSLLNDPQKTYHAKIASIDPADTEVSDSSTSSSSSS
                     SSSSSSSSSNAIYYYAKFYVPNKDDFLRIGMSIQNEIVVASAKAVLAVPTYAIKSDPK
                     GYYVEILENQKAVKKYVKLGIKDSINTQILEGVNENEELIVSSSADGLAPKMKLRF"
     gene            4616..6541
                     /locus_tag="ACHFOB_001030"
     CDS             4616..6541
                     /locus_tag="ACHFOB_001030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5799840.1"
                     /translation="MIFLKNICKNIGENAILKNVSLSIEKGEFVAIIGQSGSGKTSLL
                     NIIGTLDTPSSGTYVFDEYEVTKLNNDEKARLRREKIGFIFQRYNLLSLLSAKENVSL
                     PAVYAGKKLQERSQNAKKLLNDLELAHKLDSKPNELSGGQQQRVSIARALMNGGELIL
                     ADEPTGALDSKSGIMVLEILQKLNAQGHTIVLVTHDPKIAAQAKRVIEIKDGEILSDT
                     KKEKAQEKLTLKTMSKEKKTLTLLKNQAFECFKIAYSSILAHKLRSILTMLGIIIGIA
                     SVVCVVALGLGSQAKVLESIARLGTNTIEIRPGRGFGDLRSGKTRLNFSDLETLRSLE
                     YLEAVDAHSNTSGVATYTNISLSARAEGVGVNNFAIEGLRIDAGRILNNDDVKNSTNV
                     AVLDFNAKKNLFPDEKSENILGRVVLFNSQPFKIIGVLQKDTDKPIEDNVVRLYIPYT
                     TLMNKLTGDRNLREIIVKVKDDVSSTLAENAIIRILEIKRGQKDFFTFNSDTFKQAIT
                     ANKRTTTILTACVAVIALIVGGIGVMNIMLVSVSERTREIGIRMAIGARREDIMMQFL
                     IEAVMICTIGAILGVILSIFVIFAFNTLSTDFPMILNAYSVLLGLLSSMFIGVVFGFF
                     PARNAANLNPISALSKE"
     gene            6543..7913
                     /locus_tag="ACHFOB_001031"
     CDS             6543..7913
                     /locus_tag="ACHFOB_001031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TolC family protein"
                     /protein_id="HFN5799841.1"
                     /translation="MRVIFSIFLAFFLSACGAKLSLPKEVDLTQEQMKDLNLTYDWYR
                     SYDNAKLNEFLNFVLLNNSDINIARKTLLSALTRADLIDYDLYPTLSGNLGFGGDKDL
                     NSGKQSKNFNNSLNLSYELDIYGKLRDSASASEFSAKASAYDLENLKISMINTALNDV
                     FELAYFNDVDKLLRAYLSNLEQMKELYSYKYKLGKIEELDLLNIEQSLLRAKQNLLSN
                     DQNRNLLIKNLQDLLAKQEGFAYIEYFKTLSLNDFKTLSPDFNIPLKALAYRADVRSK
                     LNSLKSAFKDYSSMQKSILPSISLGGALSGSDKKIDDSFKFEILSGNVKISLPFLDYG
                     RVKQNIKISQFTYEQLLISYEQALQSAMNEFALNYKDYQSNTLLLQNLQSINIKQELI
                     TKAYYEKYILGKSELKDYLDANNTLNSTQQEFLRARFNLLKTINSYYQITALSFNDEN
                     LEFLKY"
     gene            complement(7915..9093)
                     /locus_tag="ACHFOB_001032"
     CDS             complement(7915..9093)
                     /locus_tag="ACHFOB_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HFN5799842.1"
                     /translation="MLVNKFKVILLFFIIFTSSYAQNLNTNDTIDSILNQNKNHSALT
                     SYVSKKDLKNLEKKLEKNQNIGIRIYGDSHMAADFFPRVIRGYLIRSNSIGFAYPLQP
                     KYQQNLNLVYSYKNFEILNSRNPANAGHNFPLGGIIAKAKTKGAKINLDTTLDKKNFK
                     IGFLFKAKQNTNAFSIKDAKNQSYELRTTQINKWSYKELELDLPLQISALQKDAELGG
                     YFITNKDNNVFLDTIAINGAKSDLWLSWNQTVVKKELGLLHNDLIILAYGSNDALFKG
                     FEKQKFKNNLKKWISILKTYNKNAVIMLISPPTVVQKQGKNYKLAPDFFTIRKALYEV
                     AKEEKTLIFDMHQFMQDSGGKNKWIEQKLSLNDVHLTIKGYELMAKKLLEDLKNIIDY
                     "
     gene            complement(9080..10090)
                     /locus_tag="ACHFOB_001033"
     CDS             complement(9080..10090)
                     /locus_tag="ACHFOB_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF459 domain-containing protein"
                     /protein_id="HFN5799843.1"
                     /translation="MNVVRFFFILIIVLGLVVVVMNQSISSYIEQKYHFAFYPHNDLL
                     KEANGFKIKLEQIRAILSNEPLPQTNEETTNQENKSIDENLSKIDKVLNTLENDENTS
                     HKETNPTLIQDANISFIDNTKLELQNGDEFLFIGDSLMQGVAIALNRDLRNLNLKVTD
                     LSKQNTGLSYKSYFDWSKATNEAFIKNSNIKYLVVLLGANDPWDIKKGGNYHRFGSLS
                     WIDIYTSRVDEIIKIAKKHKAKVFWFEIPPVKKEDLNKKIQVLNKIYSDEILKNKEIF
                     INTKLFFSVNDEYSAYIKDENNRSIKVRTDDGVHFTPSGAREMSKLLLEHIKLKEENA
                     SK"
     gene            complement(10091..>11329)
                     /locus_tag="ACHFOB_001034"
     CDS             complement(10091..>11329)
                     /locus_tag="ACHFOB_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBOAT family protein"
                     /protein_id="HFN5799844.1"
                     /translation="YFALVLFIYTFFIHYFALLIFVRRKRYIFATCMAFIILNLCFFK
                     YFPSIKGSVDEILNFFGLEFLNIDLVLPIGISFYTFTSITYLVEVYQKRRLESFLNLA
                     TFLSFFPTLLSGPIMRSSFFFEQAYQKREFKHANLIIILLVFGIVKKVLIANYLGIYA
                     KSILDFPQSYNFIQLLSAIYAYAIQIYCDFSGYVDLVCAFALMLGFTLPPNFNMPYLA
                     KNLKDFWARWHISLSTFIRDYIYIPLGGNRKGIPRTVANILIAFILSGMWHGNTLAFI
                     VWGLLHGIGIVFIHLLTLSKFSLQKIPALGRFLTFQFVCFTWIFFYYSKNLEDAIEYF
                     KACYYNFFQIPSYNDIYMLVAFGVLFMIYPLFINFKEYCIKILNLTPFLLKPFIIAFI
                     LLLVFAFMPDGIPDFIYSSF"
BASE COUNT         4121 a         1484 c         1939 g         3785 t
ORIGIN      
        1 aatacaccta aaattccata ggcaattaaa atgtaatttt cttcaataat tctagaaagt
       61 atccaaatag ccatagccaa cataacaaaa ccaaagaaaa tttttacttt ttccatccaa
      121 aaaccaggtt taataaaacc taatcctaag cctatgaaaa gcaaaggtat acccatgcca
      181 aaactcatga taaaaagcgc actaccgcct aataaagcat tgcctgtatt ggctatataa
      241 attaaagcac ctgctaaagg agctgctacg caaggaccta ctattaaagc agataaaaat
      301 cccatgatgg ctatacctaa aactcctttc cctttttcgc tttttttatg tataaaggtt
      361 tgaaatctta atggcaattc aaaacgaaaa gctccaaaca tagcaaaagc aaaagctatg
      421 aaaattagag caaaaagaat taaaataata ggtttttgta aaattccttg aatacttgct
      481 cctagaaaac ttgctataac tccagcaata gcataggcta aagacatgaa aaaaacatag
      541 ataaaagaga gaaaaaaact atattttttt gaaaatttag cattactttt tgctacgata
      601 agagaagata aaatcggaat cataggtaaa atacaaggtg ttaaggagag taaaagtcca
      661 tagccaaaaa aacttagcaa aatccaaaaa aagttatctg ttgctaaaaa atttgctata
      721 gagctttctt cagattcaat tttagttttt ttatctgttt tttgagtttt gtaaggtttt
      781 gaaatttcaa aagcatcttt tttagaaatg agatcaaagt accaagtttg aggattataa
      841 cacaagcctt gttcagaaca accttgaaat tcgagtttga ttaaatttgt ggtatttttt
      901 gcaaagtgct ctagtaataa atttggcaaa gctaaattta atttttgata ataaacattt
      961 tcattacctc ttgtagaact ttgaggtaga ttaatcaaag aacttatatc tttttcgttt
     1021 atatataatt taagtttatt agaataaaga taaatatctt ttccaagttc aatatcaatt
     1081 gagatagagt tattataaga gtttgatttt acattaaaag cttcatttaa agacaatata
     1141 gaagcaaaac ataaacaaaa acttaataaa ataataccaa aaatacgcat aaatttccta
     1201 aaagcttatt ttttccttta tttttaactt caattataat ttattatggt aaatttgctt
     1261 taaatacttt ataaaggttt gaaaatgcaa gaaaataatt ctccaaaaac gcaagcggtt
     1321 gttaaaaaga atgaaattta tgtttctgtt aaaagaaaga aaagtacaat agaatatgaa
     1381 aaagatttaa agaatttgca aattgagctt ttgaaatttc aaaatcatgt taaagccaag
     1441 ggtttaaagg ttcttatact tatagaaggg cgtgatgcgg ctggaaaagg tggggcgatt
     1501 aaacgtttga ttgagcattt aaatccgcgt ggttgccgcg ttgtggctct tgaaaaacct
     1561 agtgatgtgg aaaaaacaca gtggtatttt cagcgttata tagcacattt gccctcggcc
     1621 ggtgagattg tgatttttga cagatcttgg tataatcgtg caggagtaga accggttatg
     1681 ggtttttgta caccgcaaca acataaagat tttttaagag aagtgccttt gtttgaaaat
     1741 atgatttcaa atagtgatat tatttttttt aaattttatt tttcagtatc aaaagatgag
     1801 caaaaaaaac gttttgaaaa acgccgaagc gatccgctta aacaatataa attatctcct
     1861 gtggatcaaa aatcgcaaga attatgggat aaatatactt tagctaaata ctctatgctt
     1921 ttagcatcta atactccaac ttgtccttgg actattattt cttctgatga taagaaaaaa
     1981 gcaagattaa atttattgcg ttttatactt tctaaggtag aatatccaaa taaaaaaact
     2041 ggagattttt ccaaaattga tgcaaaatta gtgcgtagtg gagaagaaga aatacgaaaa
     2101 atggaggcga atttggaaaa acttgacagt aaaaaagcag atgagaaaat aaaagattta
     2161 gattaaggaa aagaatgcaa aagctggttg aaaatttagc actaaagtac tatgataaag
     2221 tagttgattt aagacatcaa attcatatgc atcctgagct tgaatttgaa gaagaaaata
     2281 cagctcgttt agtgtgtaaa attttagatg agtttggcat taaatatcaa aaaaatattg
     2341 caaaaacagg aattttagct actatagaag gaaaaaagaa gagtcagaaa aaaccaaaat
     2401 gcgttctttt aagagcggat atggatgctt tgcctgtaca agaaaaaact aatctaagtt
     2461 atgcttcaaa aattgatggt aagatgcacg catgtggaca tgatggacat acagcaggac
     2521 ttttgggagc tgctttgata ttaaatgagc tcaaagatga attttgtggc acgattaaat
     2581 ttatgtttca gcccgcagaa gagggaagcg gtggagctaa acctatgata gaatcaggtg
     2641 tattggaaaa tccttatgtt gatgcggttt ttggttgtca tttatggggg tctttgcttg
     2701 aaaatactgc tcaaattgta agtggcgaaa tgatggctgg aacggatatt tttgatttgg
     2761 aatttattgg cagaggagga catggagctc atccgcacac ttgtatagat cctataatta
     2821 tggcaacgca atttgtaaat aatatacaaa gtgttgtttc taggcgttta gccccttatg
     2881 aagcaggggt gattaccgta ggtcaaattt gtgcaggaac tacttataat gttattccta
     2941 taaatgctta tttaaaagga accgtgcgtt ttttaaatga taaaacacaa gatattttaa
     3001 aaagttctct agaagaagtg gctgctgcta cagcaaaatc taatggtgga gattataagc
     3061 ttaaatatac taaagaattt cctccattga ttaatgatga aaaagctgct ttaatagcaa
     3121 gaaaagcttt tgcaaaggtc ttaggagaag aaaatatcat tgtttcttct aaacctgaca
     3181 tgggggctga agattttgct tttttaacac gagaaagaat gggagcttat gtgtttgttg
     3241 gaatttcaaa ggatttaaat catccagctt tgcatcatag ttctactttt tgttgggatg
     3301 atgaaaattt aaaagtctta atgcaaggtg atgtgatgat ggctttagaa tttttaaatt
     3361 tataaaatag aattaaaaat tcacaaaaaa ttcacaaaaa atgagtaaaa tttaatcttg
     3421 atttttcttt aggatttgtt attatgaaaa agaaggttat tttaatcgtt ttaattgcaa
     3481 tacttggaag tgttggagct tattttattt tttttaataa tgatgaaaaa atcagctatt
     3541 taactcaaaa aatacaaaaa aaagatatat ctcaaaccat agaggcagta ggaaaggtat
     3601 atgccaaaga tcaagtcgat gtgggtgctc aagttagcgg acaaattata aaactttatg
     3661 tggatgtggg aactcatgta aagcaaggtg atttgatcgc tcaaattgac aaagataaac
     3721 aacaaaacga tttagatatt acaaaagctc agcttgaaag cgctaaggct aatttagaga
     3781 gtaaaaaagt tgctcttgag attgcgagta agcagtatca aagagagcaa aaactttatg
     3841 cagctaaagc aagttctctt gaaaatttag aaactcaaaa aaataattat tatactttaa
     3901 aagctaatgt tgcagagctt aatgctcaag tagttcaact tgaaatcact cttaaaaatg
     3961 cacaaaaaga tttaggttat acaaccatta ctgctcctat ggatggtgtt gtgattaatg
     4021 tagctgtaga tgaaggacaa acagttaatg ctaatcaaaa tactcctact atagtccgta
     4081 tagctaattt agacgaaatg gaagtaagaa tggaaatagc agaggctgat gtgagtaaga
     4141 taaaagtagg aacagagctt gatttttctt tgcttaatga tcctcaaaaa acttatcatg
     4201 ctaagattgc aagtatagat ccagctgata ctgaagtgag tgattctagt acaagctcaa
     4261 gctcatcaag ttcgagttct tcaagctcaa gctcatcaaa tgctatttat tattacgcaa
     4321 aattttatgt acctaataaa gatgattttt tgcgtattgg tatgagtata caaaatgaaa
     4381 ttgtcgtagc aagtgcaaag gctgttttag cagtgccaac ttatgcaatt aaaagtgatc
     4441 caaaaggcta ttatgttgaa attttggaaa atcaaaaagc tgttaaaaaa tatgtcaaac
     4501 ttggcattaa agattctatc aatactcaaa ttttagaagg tgtaaatgaa aatgaagaat
     4561 tgatagtaag ctcaagtgct gatggtttag ctcctaaaat gaagttgaga ttttaatgat
     4621 ttttcttaaa aatatttgca aaaatatagg tgaaaatgcc attttaaaaa atgtaagttt
     4681 aagtatagaa aaaggtgaat ttgttgctat tataggacaa agtggaagtg gtaaaacttc
     4741 acttttgaat atcataggaa cattagatac accgagtagt ggaacttatg tttttgatga
     4801 gtatgaagtc actaaactta ataacgatga aaaagcaaga ttaaggcgtg aaaaaatagg
     4861 ctttatattt caaagataca atcttttaag cttgctgagt gctaaagaaa atgtttcttt
     4921 acctgcagtt tatgcgggaa aaaaattaca agaaagaagt caaaacgcta aaaaactttt
     4981 aaatgattta gaattagctc ataagttaga ttctaaacca aacgaattaa gcggagggca
     5041 gcaacaacgc gtttctatag caagagcttt gatgaatggt ggagagctta ttttagctga
     5101 tgagccaacg ggggctttgg atagtaaaag cggcattatg gtgcttgaaa ttttacaaaa
     5161 acttaacgca caaggccata ctatagtctt agtaactcac gatccaaaaa ttgcagcaca
     5221 ggctaaaagg gttatagaga ttaaagatgg ggaaatttta agcgatacta aaaaggaaaa
     5281 agctcaagaa aaactcactt taaaaacaat gtctaaagag aaaaaaacac ttactttgct
     5341 taaaaatcaa gcctttgagt gttttaagat agcttattct tccatacttg cacacaaact
     5401 tcgttctatt ttaactatgc ttggaatcat cataggtatt gcttctgtag tttgtgttgt
     5461 ggctttagga ttgggctccc aagctaaggt gcttgagtcc attgcaaggc ttggaacaaa
     5521 tactattgaa attcgtcctg gaaggggttt tggagatttg cgttcaggta aaacaaggct
     5581 taattttagt gatttagaaa cgctaagatc tttagaatat ttagaagcag ttgatgctca
     5641 ttcaaatact tcaggtgtgg caacttatac caatatttct ttaagcgcaa gagctgaagg
     5701 agtgggggta aataattttg ctatagaagg tttaaggata gatgcgggaa gaattttaaa
     5761 taatgatgat gtaaaaaata gtaccaatgt tgctgtgttg gattttaatg ctaaaaaaaa
     5821 tctttttcct gatgaaaaaa gtgaaaatat tttaggtcgt gtggtgcttt ttaattctca
     5881 accttttaag attataggag ttttgcaaaa agatacagac aaacctatag aagataatgt
     5941 agtgcgtctt tatataccct atacaacgct gatgaataag cttacaggag atagaaattt
     6001 gcgtgaaatc atagttaagg ttaaagatga tgtgagttca actttggctg aaaatgctat
     6061 tataagaatt ttagaaatta aacgcggaca aaaggatttt tttactttta attctgacac
     6121 ctttaagcaa gctattacag caaataaacg cactacaacg atacttaccg cttgtgtggc
     6181 tgtgattgct ttgattgttg ggggtatagg agtgatgaat atcatgcttg tttctgtaag
     6241 tgaaagaaca agagaaatag gcatacgcat ggctataggg gctagaagag aagatattat
     6301 gatgcagttt ttaatcgaag cggttatgat ttgtactata ggggcgattt taggtgtgat
     6361 tttatcgatt tttgttattt ttgcttttaa tactttaagt actgattttc ctatgatttt
     6421 aaatgcttat tctgtacttt tgggactttt aagttctatg tttatcggtg tggtttttgg
     6481 ttttttccct gcaagaaatg cagcaaattt aaatcctatt agtgcattat caaaggaatg
     6541 atatgagagt aatatttagc atttttttag catttttctt gagcgcttgt ggtgcaaaac
     6601 ttagcttgcc taaagaagtt gatttaaccc aagaacaaat gaaagattta aatcttactt
     6661 atgattggta tagatcttat gataatgcaa aattaaatga atttctaaat tttgttttat
     6721 tgaataatag tgatattaat attgctagaa aaactttgct ttcagctttg actagagccg
     6781 atttgattga ttatgattta tatccaactt taagtggaaa tttgggtttt ggtggagata
     6841 aagatttaaa ttcaggcaaa caaagtaaaa atttcaataa ttctttaaat ttaagctatg
     6901 agcttgatat ttatggcaaa ttaagagata gtgcaagtgc gagtgaattt agtgcaaaag
     6961 caagtgctta tgatcttgaa aatttaaaaa taagtatgat caatacagct ttaaatgatg
     7021 tgtttgagct ggcttatttt aacgatgtag ataaattgct tcgagcttat ctttcaaatt
     7081 tagaacaaat gaaagagctt tatagttata aatacaagct tggaaaaata gaagaattag
     7141 atcttttaaa catagaacaa agcttattaa gagctaaaca aaatttatta agcaatgatc
     7201 aaaatcgtaa tttacttata aaaaatttac aagatttatt ggcaaagcaa gaaggttttg
     7261 cttacataga gtattttaaa actttatctt taaatgattt taaaacctta agtcctgatt
     7321 ttaatatacc tttaaaagct ttagcgtacc gtgcagatgt gagatctaaa ctcaatagct
     7381 taaaatcagc ctttaaggat tattcttcca tgcaaaaatc tattttgcct agtatttctt
     7441 taggtggagc attaagcgga agtgataaaa aaatcgatga tagttttaaa tttgaaattt
     7501 taagtggcaa tgttaagatt tctttacctt tcttagatta tggtagagta aagcaaaata
     7561 tcaaaatttc acaatttact tatgagcaac ttttaatttc ttatgagcaa gccttgcaaa
     7621 gtgcgatgaa tgaatttgca ttgaattata aagattatca aagtaacacc ttacttttgc
     7681 aaaatttgca aagtattaac attaaacaag agcttatcac taaggcgtat tatgaaaaat
     7741 atattttagg aaaaagtgaa ttaaaagatt atttggatgc aaacaatact ttaaattcta
     7801 cccagcaaga atttttaaga gctagattta atcttttaaa aaccattaat tcttactatc
     7861 aaatcacagc tttaagtttt aatgatgaaa acttagaatt tcttaagtat taatttaata
     7921 atcaatgata ttttttaaat cctcgagtaa ctttttagcc atcagctcat agccttttat
     7981 ggtaagatgt acatcattga gcgaaagctt ttgttctatc catttgtttt ttcctccact
     8041 atcttgcata aactgatgca tatcaaaaat aagagttttt tcttctttag caacttcata
     8101 taatgctttg cgtatggtaa aaaaatcagg agcaagcttg tagtttttac cttgtttttg
     8161 aactacagtt ggtggagaga ttagcatgat aacagcgttt ttattgtaag tttttaaaat
     8221 actaatccat ttttttaaat tatttttgaa tttttgtttt tcaaaccctt taaagagtgc
     8281 atcattagaa ccataggcaa gaataattaa atcattgtgt aaaagtccta gttctttttt
     8341 tacaactgtt tgattccaag agagccataa atcacttttg gcaccattga ttgcaatggt
     8401 atctaagaaa acattattat ctttatttgt gatgaaatat cctcctagct cagcatcctt
     8461 ttgcaaggct gaaatttgca aaggaagatc aagttctagt tctttataag accatttgtt
     8521 aatttgtgta gttcttaact catagctttg gttttttgca tctttgatgc taaaagcatt
     8581 ggtattttgc ttggctttaa ataaaaatcc tattttgaaa ttttttttat ctagggttgt
     8641 atcaaggttg atttttgcgc ctttagtttt tgctttggct attatcccac ctagtggaaa
     8701 attatgtcca gcattagcag gatttcttga gtttaaaatt tcaaagtttt tataagaata
     8761 aacaagatta agattttgtt gatatttagg ctgtaaagga taggcaaaac ctatagagtt
     8821 agaacggatt aaatatcctc ttatgacacg cggaaagaaa tcagccgcca tatgagaatc
     8881 cccataaatt ctaattccta tgttttgatt tttttctaat tttttttcta gatttttaag
     8941 atcttttttt gatacataac ttgttaaagc agagtgattt ttgttttgat tgagtatgga
     9001 atctattgtg tcatttgtat ttaaattttg tgcataagag ctagtaaaaa taataaaaaa
     9061 caataagata actttaaatt tatttactag cattttcttc cttaagtttt atgtgttcta
     9121 ataaaagttt agacatttct cttgcgccac ttggagtaaa atgaacccca tcatctgttc
     9181 ttacttttat acttctattg ttttcatctt ttatataagc tgagtattca tcattgacac
     9241 taaaaaatag cttagtgttg ataaaaattt ctttattttt aagaatttca tcgctgtaaa
     9301 ttttattgag cacttgtatt tttttgttca aatcttcttt ttttacagga gggatttcaa
     9361 accaaaaaac tttggcttta tgttttttag cgattttaat gatttcatct acacgacttg
     9421 tgtaaatatc tatccaagaa agggagccaa aacgatggta atttcctcct tttttaatat
     9481 cccaaggatc attagcgcca agaagaacaa caagatattt aatatttgag tttttaataa
     9541 aagcttcatt ggtggctttt gaccagtcaa aataggattt ataagaaagg cctgtatttt
     9601 gtttgctaag atcggttacc ttaagattta aatttcttaa atctctattt aaggctattg
     9661 caacaccttg cattaaagaa tctccgataa ataaaaactc atctccattt tgtagttcta
     9721 atttggtatt gtcgataaaa ctaatatttg catcttggat taaggttgga tttgtttctt
     9781 tatgagaagt gttttcatca ttttctaaag tgtttagaac tttatctatt ttacttaagt
     9841 tttcatctat tgatttattt tcttgatttg tagtttcttc attagtttga ggcaagggtt
     9901 cgttgcttaa aattgcacga atttgttcta atttaatttt gaagccattg gcttctttta
     9961 aaagatcatt atgaggatag aatgcaaagt gatatttttg ttctatataa gagctaatac
    10021 tctgattcat aactacaaca accaagccaa gcactataat caaaataaag aaaaatctaa
    10081 ctacattcat ctaaaaactc gaataaataa aatcaggaat tccatctggc ataaaagcaa
    10141 aaaccaaaag taaaataaaa gctatgataa aaggttttag taaaaatgga gtaagattta
    10201 aaatcttaat gcaatattct ttaaaattaa taaataaagg atagatcata aaaagaaccc
    10261 caaaagcaac caacatatag atatcgttat aagatggaat ttggaagaaa ttataataac
    10321 aagctttaaa atattctatt gcatcttcta gatttttgct ataataaaag aaaatccaag
    10381 taaaacatac aaattgaaag gttaaaaatc ttcctaaagc tggaattttt tgtaaactaa
    10441 atttgcttaa agttagcaaa tgtataaaaa ctatgccaat accatgcaat aaaccccaaa
    10501 caataaaagc aagtgtattg ccatgccaca tacctgaaag tataaaagcg atgagtatat
    10561 tagctacagt gcgtggtatc ccttttctat tgccccctaa aggtatatag atataatctc
    10621 ttataaaggt tgaaagactg atatgccatc tagcccaaaa atcttttagg ttttttgcaa
    10681 gataaggcat gttaaagtta ggcggaaggg taaaacctaa cattaaagca aaagcacaaa
    10741 ctaaatcaac atatccgcta aaatcgcagt atatttgaat tgcataggcg taaattgcgc
    10801 ttaaaagttg tatgaaatta taagattgtg gaaagtctaa aatactttta gcataaattc
    10861 caaggtaatt ggctattaaa acttttttaa ctataccaaa aacaagcaag atgatgatta
    10921 aatttgcatg tttaaattcg cgtttttgat aggcctgttc aaagaaaaaa gaacttcgca
    10981 taataggccc tgaaagtagt gttggaaaaa atgataagaa ggttgctaaa tttaaaaaac
    11041 tttctaaacg gcgtttttga taaacttcca caagataagt gatagaagta aaggtataaa
    11101 aactaattcc tattggtaat actaaatcaa tatttaaaaa ttctaaaccg aaaaaattta
    11161 atatctcatc aacacttcct ttgatgctag gaaagtattt aaaaaaacat aaatttaaaa
    11221 taataaaagc catgcaagta gcgaaaatat aacgcttgcg acgcacaaaa attagcaagg
    11281 cgaaatagtg tataaaaaag gtatatataa ataaaactaa ggcgaaata
//
LOCUS       DAZBIH010000047        10852 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.048, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000047 DAZBIH010000000
VERSION     DAZBIH010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10852)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10852)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10852
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.048"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            68..1867
                     /locus_tag="ACHFOB_001035"
     CDS             68..1867
                     /locus_tag="ACHFOB_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoyl-containing protein"
                     /protein_id="HFN5799845.1"
                     /translation="MAKKFIDVMDTSFRDGFQSVYGARVLMDDFFPAVEAAKEAGITH
                     FEFGGGARFQSLYFYLNEDAFAMMDRFRAIVGKDANLQTLARGVNTVTLDTGSSELID
                     LHAKLFAKHGTTTIRNFDALNDVNNLKFSGECIVKYGLKHEITITLMDLPPNCKGAHD
                     VPFYEKILKEILAAEIPFHSICFKDASGTSNPNKIYETIKMARKILPQDTHIRLHTHE
                     TAGVSIACYLAALEAGVDGIDLAAAPVSGGTSQPDILTMMHALKGKDYDLGGFEEEKI
                     LKYEEVLKDCLKEYFLPPEATMVNPLIPFSPMPGGALTANTQMMRDNNILDKFPQVIH
                     AMREVVEKGGFGTSVTPVSQFYFQQAFNNVMFGPWKKIAEGYGKMVLGYFGKTPVAPD
                     TNIVELASKQLNLEPTTELAINIADKDEGKSIAYTKTLLEKEGIETSEENIFIAAACK
                     EKGIAFLKGEAKVNIRKLASMPKPMSVDENKFTVAVNGNKYHVEVSYGFDKDVNVKSV
                     KKVEENKNIISSNSTSSVDAENEVLAGISGNVFKIYVNEGEEVKSGQAIMVLEAMKME
                     IEVNAPKDGIISELCIKIGDTVNEGEVLAIYKN"
     gene            1880..3454
                     /gene="pckA"
                     /locus_tag="ACHFOB_001036"
     CDS             1880..3454
                     /gene="pckA"
                     /locus_tag="ACHFOB_001036"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HFN5799846.1"
                     /translation="MKKFDNLGLDNIKEIFHNLSYDELNAHEKANNEGLSTDNDTFCV
                     DTGIFTGRSPKDKYFVKQDPSSKYIAWGKINQPITKELFDKLLTKAKQELSGKKIYVQ
                     DAFCGASLQSRKAVRFVTEIAWQAHFVKNMFIRPSQEELENFKADFIVYNACKCINED
                     YKQDGLNSEVFVIFNVEENIAVIGGTWYGGEMKKGIFSMMNYWLPLENKLSMHCSANV
                     GEKDDVALFFGLSGTGKTTLSTDPKRRLIGDDEHGWDDEGVFNFEGGCYAKTINLDPE
                     HEPEIYGAIKRNALLENVVLRADKSVDYADASKTENTRVSYPIEHIENHEPSLKAGHP
                     KNIIFLSADAFGILPPVSKLSKEQAMYYFLSGYTAKVAGTERGITEPQATFSACFGEP
                     FMPLHPTVYARLLGEKIEKHEVNVYLVNTGWSGGSYGVGKRMSIKATRACINAILDGS
                     IAKCEFENFEVFNLAIPKALEGVESTLLNPINTWLDKNAYAETRDKLAHMFVQNFKRY
                     EDVKEGIEFSKFGPKI"
     gene            3464..4846
                     /gene="argH"
                     /locus_tag="ACHFOB_001037"
     CDS             3464..4846
                     /gene="argH"
                     /locus_tag="ACHFOB_001037"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HFN5799847.1"
                     /translation="MKNEMWSGRFSSASDELLKEFNASLNVDKTLFNEDIQGSIAHAT
                     MLESCGILKKEELDAIIKGLEQVKSEIEQGKFVFDIKDEDIHMAIEKRLSEIIGSEIG
                     GRLHTARSRNDQVATDFKLFVKKSHIELIKLLKELIQTMLEYAKVHKKTIMPSFTHLQ
                     HAQPVSFSFYILAYAFMLMRDVKRLQNSLELADFLPLGSCACAGTSYATNRELSAKIL
                     GFKDIMPNAMDGVSDRDFALDLLYDIAVIFTHTSRLCEEMILFSSSEFSFITISDSFS
                     TGSSIMPQKKNPDVCELIRGKTGRVYGNLISLLTIMKALPLAYNKDMQEDKEGIFDSV
                     KTAKDSLIILNAMLKEIQINKENMLNACKKGHMLATDLADYLVREKNIPFRKAHFIVG
                     NVVAQAEVQGIDISEIKDLSKIDPVFDEKAMELLNFEFSLNSKQSEGSSSIASVEKQI
                     QILEGFIQNL"
     gene            complement(4868..5971)
                     /gene="ychF"
                     /locus_tag="ACHFOB_001038"
     CDS             complement(4868..5971)
                     /gene="ychF"
                     /locus_tag="ACHFOB_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HFN5799848.1"
                     /translation="MSLSVGIVGLPNVGKSTTFNALTKAQNAQSANYPFCTIEPNKAM
                     VEVPDLRLNELAKIVKPERIMHSLIEFVDIAGLVKGASKGEGLGNKFLSNIRETEVIL
                     HIVRCFDEENITHVEGGVDPLRDIEIINTELILADIEQLSKKIEKLTKEAKANQKGAK
                     ESLELANSLLDHLNKGLAASSYPEKESEIYQALIKELRLLSAKEVIYGANVDENGISE
                     DNDYVKALKEYAKKNDHEVIKLCAKIEEELVGLSDEESHEFLSSLGVNESGLDQIIRT
                     AFAKLGLISYFTAGVVEVRSWTIKKGWKAPKAASVIHNDFEKGFIKAEVISYEDYIQY
                     KGENGAKEAGKLRLEGKDYIVLDGDVMHFRFNV"
     gene            complement(5968..7419)
                     /locus_tag="ACHFOB_001039"
     CDS             complement(5968..7419)
                     /locus_tag="ACHFOB_001039"
                     /EC_number="3.4.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl aminopeptidase"
                     /protein_id="HFN5799849.1"
                     /translation="MKFELNDKKLDAIKADFELVFIQDKNLKNFNKEKDFFKLNNYKG
                     EGVLLDLNNKKLYLELKSLAYEDIRLSLCTAYKTLEKLNIKSVKLSSIIGDCVVRSFA
                     SLVEGVLFGAYKFDKYKSEKKTSTLERFIISSEELNGKKFNKDEAKIGLERGEILANA
                     TNFTKNIVNEIPEIYTPLKMAEDAQNLAKENKNITCKIYDEKFLAKEKMNAFLAVNRA
                     SVHPPRLIHLSYKAKNAKKCVVFVGKGLTYDSGGLSLKPADFMLTMKADKSGAAAAMG
                     IIKAVAELALDLEVHCILGATENMIGGNAYKPDDILISREGISIEVRNTDAEGRLVLA
                     DCLSFAQDLKPDLLIDMATLTGACVIGLGEFTSAIMGNNEELQNDFYLSSKKSGEYTT
                     ILHFNPHLRELIKSNIADVSNTASSRYGGAITAGLFLDKFIRKEYKDKWLHLDIAGPA
                     YTEKSWGYSSFGAGGAGVRMCVNYLIQILRKAK"
     gene            complement(7416..8012)
                     /locus_tag="ACHFOB_001040"
     CDS             complement(7416..8012)
                     /locus_tag="ACHFOB_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN5799850.1"
                     /translation="MEEFLKNLLYQYKDLAYIIIFLWCILEGELALILAGIFAHQGHV
                     NLGFVIFIAGLGGFVGDQIYFYIGRYNKRYIQKKLKTQRRKFAVAHLLLQRFGWPIIF
                     IQRYMYGFRTIIPMSIGITRYSAKKFAIINLFSAWVWASITILLAWYFGEQIWKMVTW
                     AEEHWYYAAIIIIAFLSLLLFGFKQMEKAILKDKRKKS"
     gene            complement(8031..8579)
                     /gene="apt"
                     /locus_tag="ACHFOB_001041"
     CDS             complement(8031..8579)
                     /gene="apt"
                     /locus_tag="ACHFOB_001041"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0006168 - adenine salvage [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HFN5799851.1"
                     /translation="MIKLTQEEQKYLFDSIRIIPDFPKKGIIFRDITTLLNNKEALNF
                     LLKHLKERYKDYNLDFIAGTESRGFIFASMICAKLNLPFVPIRKPGKLPFETFSCEYD
                     LEYGSDKVELHKDAFKNIQNARVLLVDDLIATGGTAIASYELIQKAGAKCVEACFLMN
                     LKDLNGANKLEKLTSVYSVLEI"
     gene            complement(8576..8908)
                     /locus_tag="ACHFOB_001042"
     CDS             complement(8576..8908)
                     /locus_tag="ACHFOB_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799852.1"
                     /translation="MFTNWLVLTILICATIYLIVMLFYYKTLLNKEKTSKDFIKNNLD
                     DTEIVIRKLQIQLQRSLGNIDILTEELNKIKADLTSLRTRNSQYRLENDKLRQRIKEL
                     EAKIEALL"
     gene            complement(8908..9345)
                     /gene="rpiB"
                     /locus_tag="ACHFOB_001043"
     CDS             complement(8908..9345)
                     /gene="rpiB"
                     /locus_tag="ACHFOB_001043"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0009052 - pentose-phosphate shunt,
                     non-oxidative branch [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HFN5799853.1"
                     /translation="MLREKIYIASDHAGFELKEKICVFLKEKNIIFNDLGTNTCASCD
                     YPDYAHLLAEKIDERSFGILICGSGIGISIAANRHKNIRCALCHESLSAELARRHNDA
                     NVLALGGRLIGVELAIDIIEKFIQTPFEEGRHMQRIQKIEVKI"
     gene            9511..10065
                     /locus_tag="ACHFOB_001044"
     CDS             9511..10065
                     /locus_tag="ACHFOB_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheB methylesterase domain-containing protein"
                     /protein_id="HFN5799854.1"
                     /translation="MKLILIGSSTGGPNQLKFLLKDIDIKNTCVVIAQHMSASFIPSF
                     VGQFNKEAFSEVCLLNDKEILSNKIYICPKNTILSGNLNIVAAWQDVASSFKPSVDLL
                     FHSAVSLAKTNKILAIILTGMGDDGAKGLFELYKTGVRCLCENEADSVVYGMPKRAKD
                     MNPHLKPMSLKEIKKEIVNFIDQD"
     gene            10081..>10852
                     /locus_tag="ACHFOB_001045"
     CDS             10081..>10852
                     /locus_tag="ACHFOB_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CheR family methyltransferase"
                     /protein_id="HFN5799855.1"
                     /translation="MEKKITPSELELNEFIKIINEMSGIDLTDKKNILALKLNKFLEG
                     TNTKNFSEFLGKLKSNRQLKQETLDFVTIGETYFLRELAQLKEIIYYAKSLEKRVNIL
                     SAPCSSGEEVYSLALLAAQNFIKDMYILGIDINSSVIEKAKLGKYQGRTLQRLSESEK
                     RRFFLESEDKFYTINKNELCTCKFELCNVFEEKFSRLGKFDIIASRNMIIYFDHESKL
                     KLMERFHRILNDKGRLYVGNADLIPETIYFKKIFSPRGV"
BASE COUNT         3707 a         1554 c         1840 g         3751 t
ORIGIN      
        1 taattttggt aatgtgttat caaatttttg tataataatg aaaaaatatt ttttttaagg
       61 aaaaataatg gctaaaaaat tcatcgatgt aatggataca agctttagag atggttttca
      121 gtccgtttat ggggctaggg ttttaatgga tgattttttt cctgcagtag aagcagcaaa
      181 agaagcaggc attacacatt ttgaatttgg cggtggtgct agatttcaaa gcttgtattt
      241 ttatcttaat gaagatgctt ttgccatgat ggatagattt agagctattg taggaaaaga
      301 tgccaatctt caaactttag caagaggggt caataccgtt actttagaca ctggaagtag
      361 tgagcttatt gatttgcatg caaaactttt tgcaaaacac ggtactacaa cgataagaaa
      421 ttttgatgcc cttaatgatg taaataattt aaaatttagt ggtgaatgta tagtaaaata
      481 tgggttaaag catgaaatta ctatcacttt aatggattta ccgccaaatt gtaaaggtgc
      541 ccatgatgtg cctttttatg aaaaaatttt aaaagaaatt ttagcagcag aaattccttt
      601 tcatagtatt tgtttcaaag atgcaagtgg aacttctaat ccaaataaaa tttatgaaac
      661 cattaaaatg gctagaaaaa ttttacctca agatacacac attaggcttc atacgcatga
      721 aactgcagga gtgagtatag cttgctatct tgcagcactt gaagcaggtg ttgatggtat
      781 cgatttggct gcagctcctg taagtggtgg aacttctcag cctgatattt taaccatgat
      841 gcatgcctta aaaggtaaag attatgattt aggtggattt gaagaagaaa aaattctaaa
      901 atacgaagaa gttttaaaag attgtttaaa agagtatttt ttaccccctg aagctactat
      961 ggtaaatcca cttattcctt tttctcctat gccaggagga gctttaacgg caaatacaca
     1021 aatgatgagg gataataata ttttagataa atttccacag gtcattcatg ctatgagaga
     1081 agttgtagaa aaaggtggat ttggtacttc ggttactcca gtttctcaat tttattttca
     1141 acaagcattt aataatgtta tgtttgggcc ttggaaaaaa atcgcagaag gttatggaaa
     1201 aatggtgctt ggttattttg gaaaaactcc tgttgcaccc gatacaaata ttgttgaact
     1261 tgcttcaaaa caacttaatt tagaacctac tacagagctt gctataaata tagctgataa
     1321 agatgagggt aaaagtatag cttataccaa aaccttactt gaaaaagagg gtatagaaac
     1381 gagtgaagaa aatatattta ttgcagcagc ttgtaaagaa aaaggtatag catttttaaa
     1441 aggagaggca aaggtaaata tacgcaaatt agccagtatg ccaaaaccta tgagtgtaga
     1501 tgaaaacaaa tttaccgtag ctgtaaatgg taataaatat catgtagaag taagctatgg
     1561 ctttgataaa gatgttaatg ttaagagtgt aaaaaaagta gaagaaaata aaaatattat
     1621 ttcttcaaat tcgacaagtt ctgtagatgc tgaaaatgaa gttttagcag gtatttcggg
     1681 taatgttttt aaaatttatg ttaacgaagg cgaagaagta aaatcaggtc aagctatcat
     1741 ggttttagaa gcaatgaaaa tggagattga ggttaatgct ccaaaagatg gaattatttc
     1801 agagctttgt attaaaatag gcgatactgt taatgaaggc gaagtattag ctatttacaa
     1861 gaattaaagt gagggaaaaa tgaaaaaatt tgataattta ggtttagata acataaagga
     1921 aatttttcat aatttaagtt atgatgaatt aaatgctcat gaaaaagcaa ataatgaagg
     1981 tttaagcacg gataatgata ctttttgtgt ggatacggga atttttacag gtagaagtcc
     2041 taaagataaa tattttgtaa aacaagatcc atctagtaaa tatatagctt gggggaagat
     2101 aaaccagcct attacaaaag aattatttga taagcttttg accaaagcaa agcaagagtt
     2161 aagtggaaag aaaatttatg ttcaagatgc tttttgcggt gcttctttgc aaagtcgcaa
     2221 agcagtaaga tttgttactg aaattgcatg gcaagcgcat tttgttaaaa atatgtttat
     2281 tcgcccaagt caagaggaac ttgagaattt taaagcagat tttattgttt ataatgcttg
     2341 caaatgtatc aatgaagatt ataaacaaga tggtttaaat tcagaggttt ttgtgatctt
     2401 taatgttgaa gaaaatatag cggttattgg tggaacttgg tatggtggag aaatgaaaaa
     2461 aggtattttt tctatgatga attattggct gccactagaa aataaacttt ctatgcattg
     2521 tagcgcaaat gtcggagaaa aagacgatgt ggcacttttc tttggactta gcggtacagg
     2581 aaaaactacg ctttcaaccg atccaaaaag aagactcata ggtgatgatg agcatggctg
     2641 ggatgatgaa ggtgtattta attttgaggg cggttgttat gcaaaaacaa tcaatcttga
     2701 tcctgagcat gagcctgaaa tttatggagc tattaaaaga aatgcacttt tagaaaatgt
     2761 agttttaaga gctgataaga gtgttgatta tgctgatgct tcaaaaacag aaaatacgag
     2821 agtttcttat cctatagagc atattgaaaa tcatgagcct agcttaaaag cagggcatcc
     2881 aaaaaatatt atatttttaa gtgcagatgc ttttggaatt ttgcctccgg tgagtaaatt
     2941 aagtaaagag caagctatgt attatttttt aagcggttat acagcaaaag tagctggaac
     3001 tgagcgtggt ataacagagc ctcaagcaac tttttcagct tgctttggag aaccttttat
     3061 gcctttgcat ccaacggttt atgcgagatt gcttggtgaa aagattgaaa aacatgaagt
     3121 taatgtttat cttgttaata cgggttggag cggtgggagt tacggtgtag gtaaaagaat
     3181 gagtattaag gctactaggg cttgcattaa tgctatttta gatgggagta ttgcaaaatg
     3241 cgaatttgaa aattttgaag tgtttaattt agctattcca aaagctttag aaggtgtaga
     3301 aagcacgctt ttaaatccta taaatacttg gttagataaa aatgcctatg ctgaaacaag
     3361 agataagcta gcacatatgt ttgtgcaaaa tttcaaacgc tatgaagatg tcaaagaagg
     3421 tattgaattt agcaaatttg gaccaaaaat ttaaggtatt taaatgaaaa atgaaatgtg
     3481 gtcaggacgc tttagcagtg caagcgatga gcttttaaaa gaatttaatg cgagtttaaa
     3541 tgtagataaa actttgttta atgaagatat acaaggatct atagcgcatg ctacaatgct
     3601 tgaaagttgt ggtattttaa aaaaagaaga attagatgct attataaaag gcttagaaca
     3661 agttaaaagt gaaatagagc aaggtaaatt tgtttttgat atcaaagatg aagatataca
     3721 tatggctata gaaaagcgtt taagcgagat cataggcagt gaaattggtg gaagacttca
     3781 tactgcaaga agtagaaatg accaagtggc tactgatttt aaactttttg taaaaaaatc
     3841 tcatattgaa cttataaagc ttttaaaaga attgattcaa accatgctcg aatatgctaa
     3901 agtgcataaa aaaactatta tgccaagctt tacacattta caacacgctc agcctgtgag
     3961 tttttctttt tatattttag cttatgcttt tatgttaatg cgagatgtta agcgtttgca
     4021 aaatagccta gaacttgcag actttttgcc acttggatct tgtgcatgtg caggaacaag
     4081 ctatgctacc aatcgtgagt tgagtgctaa aattttagga tttaaagata ttatgccaaa
     4141 tgctatggat ggagtgagtg atagggattt tgctcttgat ttgctttatg atatagcagt
     4201 tatttttaca cacacttcaa gactttgtga ggaaatgatt ttattttcaa gctcagaatt
     4261 ttcttttata accataagtg atagtttttc aacgggaagt tctattatgc ctcagaaaaa
     4321 aaatcccgat gtttgtgagc ttatacgtgg aaaaacaggg cgtgtttatg gaaatttaat
     4381 ttctctttta actataatga aagctttacc tttagcttat aataaagata tgcaagaaga
     4441 taaagagggg atttttgata gtgtaaaaac cgctaaagat agcttaatta tcttaaatgc
     4501 aatgttaaaa gaaatacaaa tcaacaaaga aaatatgctt aatgcttgta aaaaaggtca
     4561 tatgttggct accgatttgg cagattattt ggtgcgtgaa aaaaatattc cttttagaaa
     4621 agcacatttt atagtgggaa atgttgttgc acaagctgaa gtacaaggca ttgatataag
     4681 tgaaattaaa gatctttcaa aaatagatcc tgtatttgat gaaaaagcta tggaactttt
     4741 aaattttgaa ttttctttaa attctaagca aagtgaaggc tcaagttcta ttgcaagcgt
     4801 agaaaagcaa attcaaattt tggaaggttt tattcaaaat ttataaatat tatttaggct
     4861 attttgccta aacattgaat ctaaaatgca ttacatcgcc atctaaaacg atatagtctt
     4921 ttccttcaag gcgtagcttt cctgcttctt tggcgccatt ttcgcctttg tattggatat
     4981 aatcttcata ggaaataact tcagctttta taaagccttt ttcaaagtca ttgtgaatta
     5041 cacttgctgc ttttggtgct ttccagcctt ttttgattgt ccaagaacgc acttcaacta
     5101 caccagcggt aaaataactg atcagtccaa gcttagcaaa agcagtgcgt atgatttgat
     5161 caagaccgct ttcgttaact cctagagaac ttaaaaattc atgactttct tcatcgctta
     5221 atcctactaa ttcttcttcg atttttgcac aaagcttgat aacttcatga tcattttttt
     5281 tagcatattc ttttaaagct tttacataat cattatcttc actaatacca ttttcatcaa
     5341 catttgcacc ataaatcact tctttagcag aaagcagtct taattcttta attaaggctt
     5401 gataaatttc actttctttt tcagggtaag agcttgcagc taagcctttg tttaaatgat
     5461 caagtaagga atttgcaagt tcgagacttt ctttagcgcc cttttgatta gctttggctt
     5521 ctttggtgag tttttctatt tttttactaa gttgctcaat atctgctaaa ataagctctg
     5581 tattgataat ttctatatca cgtaaaggat caactccacc ttcaacatgg gtaatatttt
     5641 cttcatcaaa acaacgtact atatgcaaaa taacctcagt ttcacgtata tttgaaagaa
     5701 atttatttcc caagccttct cctttacttg cacctttaac aagcccagcg atatctacaa
     5761 attctattaa agaatgcata attctttcag gttttactat tttagcaagt tcattaagtc
     5821 ttaaatcagg aacttcaacc atggctttat taggctctat ggtgcagaaa ggatagtttg
     5881 cgctttgggc attttgtgct ttagttaaag cattaaaagt cgttgatttg ccaacatttg
     5941 gaagtcctac tatacctaca cttaaactca tttagctttc cttaaaattt gaattaaata
     6001 attaacgcac attctaactc cagctccacc tgcgccaaaa ctagaatatc cccaagattt
     6061 ttctgtataa gcaggtcctg ctatgtcaag atgtagccat ttgtctttat attctttacg
     6121 aataaattta tctaaaaata atcctgcggt aattgcacct ccgtagcgac tagaggcagt
     6181 gttgctaaca tcggcaatat ttgattttat aagttctctt aagtgagggt tgaagtgtaa
     6241 gattgtagta tattctccac tttttttaga gcttagataa aaatcatttt gcaattcttc
     6301 attatttccc ataatagcac ttgtaaattc tccaagtcct ataacacaag ctccagtaag
     6361 agttgccata tcgataagta aatcaggttt taaatcctgt gcaaaagaaa ggcaatcagc
     6421 taaaactaag cgtccttctg catctgtatt tcttacttct atgcttatac cttcgcgact
     6481 gattaaaata tcatcgggtt tgtaagcatt gccacctatc atattttcag ttgcacctaa
     6541 aatacaatgc acttctaaat ctaaagcaag ttcggctacg gcttttatga ttcccattgc
     6601 tgctgctgca ccgcttttat cagctttcat tgtaagcata aaatcagctg gttttaagct
     6661 taatccaccg ctatcgtaag ttaagccttt tccaacaaat acaacacatt tttttgcatt
     6721 tttggcttta tagcttagat gaatgaggcg tggtgggtgt accgaggcgc gatttactgc
     6781 taaaaaggca ttcatttttt ctttagctaa aaatttttca tcataaattt tacaagtgat
     6841 gtttttattt tctttagcta aattttgtgc atcttctgcc atttttaaag gggtgtaaat
     6901 ttcaggaatt tcattgacta tatttttggt aaaatttgta gcattggcta aaatttctcc
     6961 acgctctaaa cctatcttag cttcatcttt attaaatttc ttaccattta attcttcgct
     7021 tgaaataata aatctttcta aagtacttgt ttttttctca cttttatatt tgtcaaattt
     7081 ataagctcca aaaagtacgc cttcaactaa agatgcaaaa cttctaacta cacaatctcc
     7141 tattatgcta gaaagtttta cgcttttaat attaagtttc tcaagagttt tatatgctgt
     7201 gcaaagactt aatcttatat cctcataagc cagactttta agctctaaat aaagcttttt
     7261 attgtttaag tccaataaaa caccttcgcc tttgtaatta ttaagtttaa aaaaatcttt
     7321 ttctttgttg aaatttttta aatttttatc ctgtataaaa acaagttcaa agtctgcttt
     7381 tatagcatct agttttttat cgtttaattc aaatttcatg attttttcct tttatcttta
     7441 agtatagctt tttccatttg tttaaaacca aataataaaa gggataaaaa agctataata
     7501 ataatggctg cataatacca atgttcttca gcccaagtca ccatcttcca aatttgttct
     7561 ccaaaatacc aagctaaaag tatagtgatt gatgcccaaa cccaagcact aaaaagattg
     7621 ataatagcaa atttttttgc actataacgc gtgattccta tactcatagg tataatggtt
     7681 ctaaagccat acatatagcg ttgtataaaa ataataggcc aaccaaaacg ttgtaaaagt
     7741 aggtgtgcta ctgcaaattt acgcctttga gtttttaatt ttttttgtat gtagcgttta
     7801 ttatatcttc ctatatagaa ataaatttga tcgcctacaa aaccgccaag acctgctata
     7861 aatataacaa agcctaaatt tacatgtcct tgatgggcaa aaatacctgc taaaattaaa
     7921 gctaactctc cttctaaaat acaccataaa aaaataataa tataagctag atctttgtat
     7981 tggtaaagta aattttttaa aaattcttcc atttgtacct ttctatagtt ttaaatttct
     8041 aaaacactat aaactgaagt aagtttttca agtttatttg ctccatttaa atctttaaga
     8101 ttcattaaaa aacaagcttc aacacatttt gctccagctt tttgaatgag ttcatatgaa
     8161 gctatagctg ttccgccagt tgctattaaa tcatctacaa gtaaaactct tgcattttga
     8221 atatttttaa atgcatcttt atgaagttct actttatcgc tgccatattc aagatcgtat
     8281 tcgcagctaa aggtttcaaa agggagtttt ccaggttttc taataggcac aaaaggaaga
     8341 ttaagttttg cacaaatcat agatgcaaag ataaatcctc tgctttctgt tcctgctatg
     8401 aagtctagat tgtaatcttt gtagcgttct tttaaatgtt taagtagaaa atttaaagcc
     8461 tctttgttat ttagtagagt ggtaatatct ctaaaaataa ttcctttttt tggaaaatca
     8521 ggaataatcc taatgctatc aaacaggtat ttttgttctt cttgtgttag ttttatcata
     8581 ataatgcctc gatttttgct tctaattctt taattctttg tcttagtttg tcattttcca
     8641 aacgatattg agaatttcta gttcttaaag atgtaaggtc tgctttgatt ttattaagtt
     8701 cttctgtgag tatatctata tttccaagac ttctttgaag ttgaatttgt agttttctaa
     8761 tgacaatctc agtatcatca agattgtttt tgataaaatc ttttgatgtt ttttctttat
     8821 taagtagagt tttatagtaa aacaacatta caataagata gatagttgca caaatcaata
     8881 tagttaaaac aagccagttt gtaaacatta tatttttacc tcaatttttt gaattctttg
     8941 catatgtctc ccttcttcaa aaggagtttg aatgaatttt tctataatat ctatagctaa
     9001 ttcaaccccg attaatcttc cgcctaatgc caaaacattg gcatcattat gccttcttgc
     9061 aagttctgca cttaagcttt catgacataa tgcacaacga atgtttttat gacgatttgc
     9121 tgcaatagaa attccaattc cacttccaca aataagaatg ccaaagcttc gttcgtctat
     9181 tttttcggca agtaaatgtg cataatcagg ataatcgcag cttgcgcaag tgtttgttcc
     9241 taaatcgtta aaaattatat ttttttcttt taaaaatacg caaatttttt cttttaattc
     9301 aaaaccagca tgatcactag caatataaat tttttcccta agcattggtt tcctacatta
     9361 ctatataaaa taagataaaa acctaatctt atcatattaa atcataaaaa cagcttttct
     9421 ttttttaaaa ataagcttta tttttcttta tatatgttag aattacgtga caagaaaaat
     9481 aaaatttcaa taaattaagg ggagaagaaa atgaagctca tactcatagg atcttcaaca
     9541 ggtggtccta atcagcttaa atttctttta aaggatattg atataaaaaa tacttgtgta
     9601 gttatagctc aacacatgag tgccagtttt attccatctt ttgtggggca atttaataaa
     9661 gaagctttta gtgaagtgtg cttattgaat gataaagaga tattaagcaa taaaatttat
     9721 atttgcccta aaaatactat tttatctgga aatttaaata ttgtagccgc ttggcaagat
     9781 gtggcttcaa gctttaaacc gagtgtggat ttactttttc attccgctgt ttctttggca
     9841 aaaacaaata aaatacttgc tattatttta acgggcatgg gagatgatgg cgcaaaaggt
     9901 ttatttgagc tttataaaac aggagttaga tgtttatgcg agaatgaagc agatagcgtc
     9961 gtttatggta tgccaaaaag agcaaaagat atgaatccac atttaaaacc tatgagctta
    10021 aaagaaatta aaaaagaaat tgtaaatttt attgatcagg attaataaaa ggaaaattgc
    10081 atggaaaaaa aaataactcc tagcgaatta gaacttaatg aatttataaa aattatcaac
    10141 gaaatgagcg gtattgattt aaccgataaa aaaaatatac tagctttaaa gttgaataaa
    10201 tttcttgaag gaactaatac taaaaatttt tccgaatttt tgggaaaatt aaaaagcaat
    10261 agacaactta aacaagaaac tttagatttt gtaaccatag gtgaaactta ttttttaaga
    10321 gaattggctc aattgaaaga aataatttat tatgccaaaa gcttagaaaa gagagtaaat
    10381 atcctaagcg ccccttgttc aagtggagaa gaggtatatt ctttggcatt attggctgca
    10441 cagaatttta ttaaagatat gtatatttta ggcattgata ttaattcaag cgtgattgaa
    10501 aaagcaaaac ttggaaaata tcaaggaaga actttacagc gattgagcga gagtgaaaaa
    10561 agaaggtttt ttttagaaag cgaagataaa ttttatacta ttaataaaaa tgagctttgt
    10621 acttgtaaat ttgaactttg caatgttttt gaagaaaaat tttcaagatt gggaaaattt
    10681 gatattatag cttctagaaa tatgattatt tattttgatc atgaatcaaa actaaaactt
    10741 atggagagat ttcatagaat tttaaatgat aaaggaaggc tttatgttgg caatgctgat
    10801 ttaattccgg agactattta ttttaaaaag attttctctc caagaggtgt tt
//
LOCUS       DAZBIH010000048        10663 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.049, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000048 DAZBIH010000000
VERSION     DAZBIH010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.049"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1034)
                     /locus_tag="ACHFOB_001046"
     CDS             complement(<1..1034)
                     /locus_tag="ACHFOB_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDC sensor domain-containing protein"
                     /protein_id="HFN5799856.1"
                     /translation="MQSINSGKSVGISAKLTLWVGILVVLILAITSAISYFDSRNNTY
                     ELLKDTQLKTMQDVDAFFKSYAMSKRNGIQILANELTNRPDMSNEELINLIKVIKKVN
                     DYDLVYVGFDNTGKNYQSDDQILDLSKGYDTKNRPWYKAAKEAKKLIVTEPYKSAASG
                     EVGLTYAAPFYDRNGNFRGVVGGDYDLANFSTNVLTVGKSDNTFTEVLDSEGTILFND
                     EVAKILTKTELSINIANAIKANPALIDPRNQDTLFTAKDHQGVDYAIMCNSAFNPLFR
                     ICTITENKVYTEAVNSILMKQVIVGIIAIIIALILIRFLISRSLSPLAAIQTGLTSFF
                     DFINHKTKNVS"
     gene            1227..2102
                     /gene="zupT"
                     /locus_tag="ACHFOB_001047"
     CDS             1227..2102
                     /gene="zupT"
                     /locus_tag="ACHFOB_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc transporter ZupT"
                     /protein_id="HFN5799857.1"
                     /translation="MQFTFEQIFIAMLLTLFAGFSTAIGSIIAFFSRKDDLRVLSLGL
                     GFSAGVMIYISFMEILPTALKDFKNHYDSHWAELLGLACFFGGILISLLIDKLIPEDV
                     NPHEPKEDLSELKICPLPQKGQNPPKFHPGEKLHQINTKALKRTGIFTALAIAIHNFP
                     EGFATFISSLDNLTLGIAIAIAVAIHNIPEGLAVSLPIYHATGDKKKAFIYSALSGFA
                     EPLGAFVGALILLPFIGDLTLAISFAVIAGIMVFISLDELLPAAKTYDKAHDSLYGLI
                     AGMAIMALSLNLLGQ"
     gene            complement(2126..4642)
                     /locus_tag="ACHFOB_001048"
     CDS             complement(2126..4642)
                     /locus_tag="ACHFOB_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin guanine dinucleotide-containing
                     S/N-oxide reductase"
                     /protein_id="HFN5799858.1"
                     /translation="MLDRRKFLKIGASLSALPLIPSLSAGKTVEASKVSLGLVKNGEV
                     ITAAHWGILKLTIKDGKIVKSEPWEKVTKMDNPLQHYTADMVYKSRVKYPYVRKSYLE
                     NPDNPKPELRGKDEFVRVSYDEAIKLIAKELKKTRDSKGASAIFGGSYGWKSSGNMQN
                     SRILLHRFLNVTGGFVGATGDYSTGASQVIMPYVVGSIEVYEQQTSWENILSDSKYVV
                     IWGADPLSTLRIAWTSNEQRGLAYFEKLKNSKIKVICIDPVKTTTAKFLNAKWIAPRP
                     NTDVALMMGMASHLIAKKKVNYEFLDTYTTGFDKFKDYLEGKEDGVKKDTKWASKICG
                     IDEKTIKNLAETFYDNPTMIMSGWGMQRAHHGEQPHWMLVTLCAMLGQIGTKGGGFGL
                     SYHYSNGGVPTCKGGVIGGMTAGSLGIWKNGKFKGLSKAEASSEGAEWLQNAASYSFP
                     VARIADALLHPGKTIDHNGAKITYPDIDFIYWVGGNPLVHHQDTNTNVKAWRKPRTVV
                     VNEIYWTPTAKMADIIMPVTSSYERDDITMTGDYSNMHIAPMKQAVEPVGESKDDYVI
                     FSDICKIYGKDVFNAYTENGKKAKDFIKEYYNSALKQTQSFGEAFATPMPSFEEFWAK
                     NEPITFEPTAESLEWTRFSEFIEDPILNALGTDSGLIEIYSETIKNYNYDDCKAHPTW
                     FEPIEWLGNASKEAPFHLLTNHPRDRLHSQLCHTSLRDTYAIKDREPILINSKDAKKL
                     GIKNGDVVRVFNKRGEVLAGAVVSDEIMQGVVRLCEGAWYDPNENGLCKCGNANVLTM
                     DIPTSKLANGNISHTGLVNIEKFKGELPKLTAFSAPKGAN"
     gene            complement(4653..5228)
                     /locus_tag="ACHFOB_001049"
     CDS             complement(4653..5228)
                     /locus_tag="ACHFOB_001049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome C"
                     /protein_id="HFN5799859.1"
                     /translation="MKKIFISFVVLATCLWAKNIAYTDEVVSLYLNKDDTKVIGRLLP
                     TNPFEVLKSENNKVLLKIDGYVNPKALSVIYFNDSQRIIVAAFSKNTKLNFSQRVAGK
                     DGKWDKVSLEIWADKKEFAKDNKEMLNRAKELFVNNCGICHAIHKEKEFTANAWPAIF
                     RSMADRTGIDKKDRWLVIEYLQKNAKDFKTK"
     gene            complement(5709..6218)
                     /locus_tag="ACHFOB_001050"
     CDS             complement(5709..6218)
                     /locus_tag="ACHFOB_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 family protein"
                     /protein_id="HFN5799860.1"
                     /translation="MHFTIFHIIAFIILLICFALICILIFLKVKQKEMALISYTIATI
                     FTALLIYSIFLTINQFTTQADLSKLTYTRDLRHESVIVSGKVQNLTKFEIRKCYLMLS
                     ILNQKQVGGEIFNDKNVRNAKMQNTSVSYTIEIIDTLPGNTYKEFRASVPFPPSFNNP
                     EFYHTLKCI"
     gene            complement(6218..6748)
                     /locus_tag="ACHFOB_001051"
     CDS             complement(6218..6748)
                     /locus_tag="ACHFOB_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2393 domain-containing protein"
                     /protein_id="HFN5799861.1"
                     /translation="MEKLREIVLFYTTHLYLVDYMLILLVFFLFTCVLLLCVFLRHRP
                     IAALFIIAFDIIICFLVYIYGYKLIDNEVRTRKTAITDQKMIQSSNDLIVDFNITNNS
                     KNNFKECKITAKIFADKIPNDNIIEEYKKKFIPFRQKSREIKDLKKNATQVQRIAFEN
                     FNYENNYTIRLVSECF"
     gene            complement(6761..7849)
                     /locus_tag="ACHFOB_001052"
     CDS             complement(6761..7849)
                     /locus_tag="ACHFOB_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPFH domain-containing protein"
                     /protein_id="HFN5799862.1"
                     /translation="MPADLNDYFNKKNGNSNNNGNNNRQNFNFKAPEFNFKGFGKFSP
                     FVYGVIIIILFLIVAKPFMVINSGEMGIKSTTGKYDPNPLEPGLHFFLPFVQKITIID
                     TRVRQINYASIEGSNENLSSGSGVINKNSISVLDSRGLPVSIDVTVQYRLNPLQVPQT
                     IATWSLNWENKIIDPVVRDVVRSVVGKYTAEELPTNRNTIAAQIEEGIRKTIEAQPNE
                     PVELRAVQLREIILPSKVKEQIERVQIAKQEAERTKYEVERANQEALKKAALAEGEAN
                     ATIISAKGKAMAVKIEADAQAYSNKEIANSLNTPLLNLKQIETQKEFNEALKVNQDAK
                     IFLTPGGAVPNIWVDTKDAKKQSAANMN"
     gene            complement(7862..8776)
                     /gene="ilvE"
                     /locus_tag="ACHFOB_001053"
     CDS             complement(7862..8776)
                     /gene="ilvE"
                     /locus_tag="ACHFOB_001053"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain-amino-acid transaminase"
                     /protein_id="HFN5799863.1"
                     /translation="MISADKIWMDGKLVDFKDATLHFLTHSLHYGNAVFEGTRAYKTD
                     KGLAIFRLEDHTKRLLESAKITLLNCPFSQKDLENAQIELLKANNFQSNVYIRPLIFL
                     GDGVMGLYHIKAPVRVGIAAWEWGAYLGEEGLEKGIKVKISSFARNSVKSCMGKAKAS
                     ANYLNSQIAKFEAIEAGYEEALMLDEEGFIAEGTGECFFIVKDGVLITPPNDFSLKSI
                     TQDTVLKIAHDLGITVLRQRISRDEVYTADEAFFTGTAAEITPINNIDARIIGNGLRG
                     SVTKKLQDAYFDVVYGRNEKYASMLTYI"
     gene            8952..9158
                     /locus_tag="ACHFOB_001054"
     CDS             8952..9158
                     /locus_tag="ACHFOB_001054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HFN5799864.1"
                     /translation="MPLVNIKLAKPSLSKEQKAELIADITELLSTKYNKSKERVVVVL
                     EDVENYDIGFGGESVEAIKAKANK"
     gene            9155..9610
                     /gene="bcp"
                     /locus_tag="ACHFOB_001055"
     CDS             9155..9610
                     /gene="bcp"
                     /locus_tag="ACHFOB_001055"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HFN5799865.1"
                     /translation="MSLNIGDKAPQFELLNQDGVKIALKDFIGKKVILYFYPKDNTPG
                     CTTEACDFSANYDKFGGKNAVIIGISPDSVTSHEKFISKFNLKHILLSDSEKEVAKAY
                     RAWGLKKNYGKEYEGIIRSTFVIDETGKIAQIYSNVRVKDHALKVLESL"
     gene            9610..>10663
                     /locus_tag="ACHFOB_001056"
     CDS             9610..>10663
                     /locus_tag="ACHFOB_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="epoxyqueuosine reductase QueH"
                     /protein_id="HFN5799866.1"
                     /translation="MLVHICCSVDSHYFIEELRKTYPDEKIIGYFYDPNIHPLSEYEL
                     RFLDVKRSCDKLGIKLYKGEYEYEKWLNAVRGYEDEPEKGARCEICFDVRMGSSVKFA
                     AKIGEKKLTTTLLTSPKKDLEQLKNALQKECEPYGVEFLAPDFRKNGGTQRQFALAKK
                     EMLYHQNYCGCIYGLKKQKQDKNFIDELMSSVNKQILPASIEARIALYKKVVLWEKKG
                     IKFEILREKFLNYRLLSALIKLDKKPVKSHILFYSHFKNAYTRFSLDEESLKQNLKEG
                     FYRSTKDEMVFVEFWRFNAFFKNKWKNFEDFLKKPLSIQAEVRWRNQVFGAYNLSPVI
                     ILEEIFPSRYEVIAKSE"
BASE COUNT         3365 a         1659 c         1722 g         3917 t
ORIGIN      
        1 gaaacatttt ttgttttatg attgataaaa tcaaagaatg aagttaaacc tgtttggata
       61 gctgcaagtg gggagagact tctgctgatt aaaaatctaa tcaagattaa agctatgatt
      121 atagctataa taccaactat aacttgtttc attaaaatag aattaacagc ttcggtataa
      181 actttgtttt ctgttattgt acaaattcta aataaaggat taaaagcaga attacacata
      241 atcgcataat ctacgccttg gtgatcttta gcggtaaata aagtatcttg gtttcttgga
      301 tcaataagag caggatttgc tttgattgca ttggcgatat tgatacttaa ttctgttttt
      361 gttagtattt tagcaacttc atcattaaaa agtattgttc cttctgaatc aagtacttca
      421 gtaaaggtat tgtctgattt tcctacagtt aaaacattgg ttgaaaaatt tgctagatca
      481 taatctccac ctacaacacc tctaaaattt ccatttctat cataaaatgg agcagcgtaa
      541 gttaaaccaa cctctccgct agcggcggat ttataaggtt ctgttactat aagctttttt
      601 gcttctttgg cagctttata ccaaggacga tttttagtat cataaccttt tgatagatct
      661 aaaatttgat catcagattg ataatttttt cctgtattat caaatcctac ataaactaga
      721 tcgtagtcat taactttttt aattactttg ataagattga ttagctcttc attgctcata
      781 tcaggacgat ttgttagctc attggctagt atttgaatac catttctttt tgacatagca
      841 tagcttttaa agaaagcatc cacatcttgc atagttttta actgagtgtc ttttagcaat
      901 tcatatgtat tgtttctcga atcaaagtaa ctaatagcac ttgtgattgc taaaattaat
      961 acaactaaaa ttccaaccca tagcgtaagc ttggctgaaa ttccaacgga tttgcctgaa
     1021 tttattgatt gcattataac tcctatattt atattgaaaa tgaaataaaa atattattct
     1081 agcaaaaaat aagagaaaaa gtgtataaaa aatgaacttt tttacataaa aaatcaaaaa
     1141 tttttaatta ttttgtatat ttttatcaag tattaacttt ttataaatat aaagagtttt
     1201 aaaatattat ttatttaaga atattaatgc aatttacatt tgaacaaatt tttatcgcaa
     1261 tgctattgac tctttttgca ggtttttcta cggctatagg ttctataata gccttttttt
     1321 ctagaaaaga tgatttaaga gtgctttctt tggggcttgg tttttcagct ggagtaatga
     1381 tatacatttc ttttatggaa attttaccta ctgcacttaa agattttaaa aatcactatg
     1441 attcgcattg ggctgagctt ttgggattag cttgtttttt tggtggaatt ttaatatctt
     1501 tattgattga taaattaatc cccgaagatg tcaatcctca cgagcctaaa gaggatttaa
     1561 gcgagttaaa aatttgtccc ttgccccaaa aaggacaaaa tcctccgaaa tttcatcctg
     1621 gagaaaagtt gcatcagatc aatactaaag ctttaaaacg tacagggatt tttacagctt
     1681 tggctattgc tatacataat ttcccagaag gttttgctac ttttatttca agtcttgata
     1741 atcttacttt aggaattgct atagctatag ctgtggctat acacaatatc ccagaaggtt
     1801 tggctgtgag tttgccgatt tatcatgcta caggagataa gaaaaaagct tttatttatt
     1861 cagctctttc gggttttgca gagcctttgg gtgcttttgt tggagctttg attttattgc
     1921 cttttatagg cgatcttact ttagctataa gttttgctgt gattgcagga attatggttt
     1981 ttatatctct tgatgagctt ttacccgctg caaaaactta tgataaggct catgatagtt
     2041 tatatggact tatcgcagga atggcaataa tggctttaag tttaaatttg cttggacaat
     2101 agaaagcctt gcggctttct taaatttagt tcgcaccttt tggggcgcta aaggcagtaa
     2161 gttttggtaa ttcaccttta aatttttcta tgtttacgag ccctgtgtga gagatattgc
     2221 cattggcaag ttttgaagtt ggtatatcca tggttaaaac atttgcattt ccacatttgc
     2281 aaagtccgtt ttcattagga tcgtaccaag caccttcgca aagtcttaca accccttgca
     2341 tgatttcatc acttacaact gcccctgcta aaacttcacc gcgtttatta aacacacgca
     2401 ctacatcgcc attttttata ccaagttttt ttgcatcttt ggaattgatt aaaattggct
     2461 ctctatcttt tattgcataa gtatctctta agcttgtgtg gcaaagttga gagtgcaagc
     2521 gatctcttgg gtgatttgta agtaagtgga aaggtgcttc tttgcttgca tttccaagcc
     2581 attcaatagg ctcaaaccaa gtagggtggg ctttgcaatc atcataatta taatttttaa
     2641 tcgtttctga gtaaatttca atgagtcctg aatctgtacc cagagcattt aagataggat
     2701 cttctataaa ttctgaaaaa cgagtccatt ctaaactttc agctgttggt tcaaaagtga
     2761 ttggttcatt tttagcccaa aattcttcaa aacttggcat aggagtagca aaagcttcac
     2821 caaaactttg agtttgtttt agggcgctgt tgtagtattc tttgatgaaa tctttagctt
     2881 ttttgccatt ttctgtgtag gcattaaaga catcttttcc ataaattttg caaatatcag
     2941 agaaaattac ataatcatct ttgctctcac ccacaggctc aacggcttgt ttcataggag
     3001 ctatatgcat atttgaataa tctcctgtca tggtaatatc atctctttcg taagatgaag
     3061 ttacaggcat gataatatct gccattttag ctgttggagt ccagtaaatt tcatttacca
     3121 caacggtgcg tggttttctc catgctttta cattagtgtt ggtatcttga tgatgcacta
     3181 aaggatttcc acctacccag tagataaaat caatatcagg ataagtgatt ttagcaccat
     3241 tatgatctat ggtttttcca ggatgaagta aagcatcagc gattcttgct acagggaaag
     3301 aataactcgc tgcattttga agccattctg caccttcgct tgaagcttct gctttgctta
     3361 agcctttaaa tttaccattt ttccaaattc ctaagctacc tgctgtcata ccaccgatca
     3421 ctccgccttt gcaagttgga acaccgccat tgctataatg gtagcttagt ccaaaaccac
     3481 ctccttttgt gccgatttgt cctaacatcg cacaaagagt aactagcatc cagtgaggct
     3541 gttctccatg atgtgctctt tgcatacccc aaccactcat aatcatagta ggattatcat
     3601 aaaaagtttc agctaaattt ttgatagttt tttcatcgat accacaaatt ttacttgccc
     3661 atttggtatc ttttttaact ccatcttctt tgccttctaa atagtcttta aatttatcaa
     3721 agccagtggt gtaagtgtct aaaaactcgt aattgacttt tttcttagcg attaaatggc
     3781 ttgccatacc catcattaaa gccacatcgg tatttgggcg tggagctatc catttggcat
     3841 ttaaaaattt cgctgtagtg gtttttacag gatctataca aatcactttg attttactgt
     3901 ttttaagttt ttcaaaatac gccaaccctc tttgttcgtt tgaagtccaa gctatgcgta
     3961 aagtagaaag cggatcagca ccccaaatca caacatattt agaatcgctt aagatatttt
     4021 cccatgaggt ttgttgctca taaacttcaa tcgatcctac aacataaggc ataatcactt
     4081 gagaagctcc tgtagaatag tcccctgtag ctcctacaaa tccacctgtt acatttaaaa
     4141 atctatgaag caagatgcgt gagttttgca tatttccact tgatttccag ccataacttc
     4201 caccaaaaat tgcacttgca cctttgctat ctcttgtttt tttaagttct ttggcgataa
     4261 gtttgatcgc ttcatcataa cttacgcgaa caaactcatc tttaccacga agttcaggtt
     4321 taggattgtc aggattttca aggtaggatt tacgcacata agggtatttc acacgagatt
     4381 tataaaccat atcagcagtg tagtgctgta aaggattatc catttttgta actttttccc
     4441 aaggttcgct ttttactatt ttgccatctt ttatagtgag ttttaaaatc ccccagtgtg
     4501 ctgcggtgat cacttctcca ttttttacaa gtccgaggct aacttttgaa gcttctacgg
     4561 tttttcctgc acttaagctt ggaatgagag gtaaagcact taagcttgct ccaattttta
     4621 aaaattttct tctatctagc atgcttttct ccttattttg ttttaaaatc ttttgcgttt
     4681 ttttgtaagt attctataac tagccatctg tcttttttat caatacctgt tctatcagcc
     4741 atagaacgga aaattgcagg ccaagcgtta gctgtaaatt ctttttcttt gtggatagcg
     4801 tggcaaattc cgcagttatt tacaaaaagc tctttggcac gatttagcat ttctttattg
     4861 tctttggcaa attctttttt atctgcccaa atttcaaggc ttactttatc ccattttcca
     4921 tcttttccag ctactctttg agagaaattt aattttgtgt ttttggaaaa agctgcaaca
     4981 ataattcttt gagagtcatt gaaataaatc acagaaagtg ctttaggatt tacataacca
     5041 tcgattttta gtaaaacctt attgttctca gactttaaga cttcaaaagg atttgtaggt
     5101 aaaagtcttc ctataacttt agtatcatct ttgttaagat aaagcgatac aacttcatca
     5161 gtataggcaa tattttttgc ccataaacat gtcgctagga caacaaaaga aatgaaaatc
     5221 tttttcatta ctattcctta atataaattt gatgtaaatg tattttaata ctatgcaatt
     5281 taattattac ttaattgtat aatttttact aagattactt atttttagtg ctttaatatt
     5341 attctttatt gatataataa atttgagtta attatatttt acttattgtt ttttagaaaa
     5401 gataaaactt caattataaa aaaaagtttg ttttgagctc agattaatac ttctgagccc
     5461 atttcgatct cgttgagttt taaggtataa gctttttata gctttatttt ccctcccatt
     5521 tttaactctc atttagcaaa gtgcttttag atttaaaggt tgattgactc cttatcttgc
     5581 atattaataa atattatatt aataaaactt aaattattat taatatttat ataatttata
     5641 gcggaattat tgttttgttg tgtgaataat taatgtattt tagaattttt actagttgat
     5701 ttcttgaatc aaatacattt taaggtgtga taaaattcag gattattaaa acttggagga
     5761 aaaggaacac tggctctaaa ttctttatag gtattacctg ggagtgtgtc tatgatttct
     5821 atagtataag aaacacttgt attttgcatt ttagcgttac ggacattttt atcattgaaa
     5881 atttctcctc ctacttgttt ttggtttaat atactaagca ttaaataaca ttttctgatt
     5941 tcaaatttag taagattttg aacttttcca cttactataa cgctttcatg tcttagatct
     6001 cttgtgtagg ttagtttgct aagatcggct tgagtggtga attgattgat tgtcagaaaa
     6061 atagaatata tcaaaagtgc ggtaaaaata gtagctatgg tataagaaat caaagccatt
     6121 tctttctgtt tgacttttag aaagattaaa atacaaatca aggcaaagca aataagtaaa
     6181 atgataaaag ctataatatg aaaaatcgta aaatgcatta aaaacactcc gaaactaagc
     6241 gtatggtata gttattttca tagttaaaat tttcaaaagc aattctttga acttgggttg
     6301 cgtttttctt tagatcttta atttctctac ttttttgtct aaaagggata aatttctttt
     6361 tatattcttc tatgatatta tcattaggta ttttatctgc aaaaatttta gctgtaattt
     6421 tacattcttt aaaattattt tttgaattat ttgtaatgtt aaaatcaaca attaaatcat
     6481 ttgagctttg tatcattttt tgatctgtaa tagcggtttt tcgagttctt acttcattgt
     6541 ctattagttt atacccatag atataaacta aaaaacaaat aataatgtca aatgcgataa
     6601 taaaaagtgc cgctataggc ctatggcgta aaaatacaca aagaagtaaa acacaagtga
     6661 agagaaaaaa aactaataaa atcagcatat aatctactaa atataaatga gtagtgtaaa
     6721 aaagcacgat ttctcttagt ttctccactt gcgtatcctt ttagttcatg ttggcagcac
     6781 tttgcttttt agcatctttg gtatcaaccc aaatgtttgg cactgctcca cctggagtta
     6841 agaaaatttt agcatcttga ttaactttta aggcttcatt aaattctttt tgagtttcaa
     6901 tttgttttaa atttagcaaa ggggtgttta ggctgtttgc gatttctttg ttagaataag
     6961 cttgtgcatc tgcttctatt ttaacagcca tagctttacc tttggcgctg attatggttg
     7021 catttgcttc cccttcagct aaagcagctt tttttaaggc ttcttgatta gctctttcta
     7081 cttcatattt agttctttca gcctcttgtt ttgcaatttg cacgcgttcg atttgttctt
     7141 ttacttttga aggtaaaata atttctctaa gttgtacagc gcgaagttct acaggttcgt
     7201 ttggttgggc ttctatggtt tttcttatac cttcttctat ttgagcggct attgtgttac
     7261 gattagtagg aagttcttcg gctgtatatt ttcctacaac acttcgcact acatcacgaa
     7321 caactggatc gataatttta ttttcccaat ttaagctcca agtagctatg gtttgaggaa
     7381 cttgcaaagg atttaaacgg tattgcactg taacatcaat agatacaggc aatccacgag
     7441 aatcaagtac agaaatacta tttttattaa taacacctga acctgaagat aaattttcat
     7501 tacttccctc tatagaagca tagttgattt gtcttactct agtatcgatt atggttattt
     7561 tttgtacaaa aggtaagaaa aagtgaagtc ctggttctaa tggatttggg tcatatttac
     7621 ctgttgttga tttaatcccc atttccccag aatttatcac cataaaaggt tttgcaacga
     7681 ttaaaaataa gataataata atcaccccat aaacaaatgg agagaatttc ccaaaacctt
     7741 taaaattaaa ttctggtgct ttgaaattga aattttgacg gttgttgttt ccgttattgt
     7801 tagaatttcc atttttttta ttgaaataat cattcaaatc agctggcatt tatttccttt
     7861 tttaaatata agttagcata gatgcgtatt tttcattgcg tccataaact acatcaaaat
     7921 aagcatcttg aagtttttta gttacagatc ctcttaaacc atttcctatt attcttgcat
     7981 cgatattgtt aataggtgtg atttcagcgg ctgttccggt aaaaaatgct tcatcagcag
     8041 tataaacttc atctcttgaa attctttggc gaagcacggt gataccaaga tcatgagcga
     8101 ttttaagcac tgtatcttga gtaatgcttt ttaaagaaaa atcatttgga ggtgtgatta
     8161 aaaccccatc ttttacaata aagaaacatt ctcctgttcc ttctgcgata aaaccttctt
     8221 catcaagcat taaagcttct tcatatcctg cttcaatagc ttcaaatttt gcaatttgag
     8281 agttaagata atttgcactt gctttagctt ttcccatgca tgatttaaca ctatttcttg
     8341 caaaagacga aatttttact tttatgcctt tttctaaacc ttcttctcca aggtaagcac
     8401 cccattccca agctgcaatt ccaactctta caggagcttt tatatgataa agtcccataa
     8461 ctccatcgcc taagaaaatc agagggcgga tatagacatt gctttgaaaa ttgtttgctt
     8521 ttaagagttc aatttgtgca ttttcaagat ctttttgaga aaaaggacaa tttaaaagag
     8581 taatttttgc agactctaaa agtcttttgg tgtgatcttc aagtctgaaa attgctaagc
     8641 ctttatctgt tttataggct ctagttcctt caaaaacagc attgccataa tgcaaagaat
     8701 gggttaaaaa gtgcaaagtt gcatctttaa aatcaactaa ttttccatcc atccaaattt
     8761 tatctgctga gatcattttt ttacctttta tagttgttta tttcttaaaa aatattattt
     8821 taagaataaa tcgggatttt atcaaaaata tactaacaat aagcttttat taaattaagg
     8881 ttttttgtta aaaaaaatat taggtatttt ttgaaataat tatgaaaaat tatcgttaaa
     8941 aaggagaaat tatgccatta gtaaatatca aattagcaaa gccgtcttta agcaaggaac
     9001 aaaaagcgga acttatagct gatattaccg aacttttaag cacgaaatat aataaaagta
     9061 aagaaagagt tgttgtggtt ttagaagatg tggaaaatta tgacataggc tttggcggag
     9121 aaagtgtaga agctatcaaa gcaaaggcaa ataaatgagt ttaaatatag gagataaggc
     9181 acctcaattt gagcttttaa atcaagatgg ggtaaaaata gcattaaaag attttattgg
     9241 caaaaaggtg attttgtatt tttatccaaa agataatacc ccaggttgta ctacagaagc
     9301 ttgtgatttt agtgcaaatt atgataaatt tggtggtaaa aatgcagtga ttattggtat
     9361 tagtcctgat agtgtgacaa gtcatgaaaa atttatttct aaatttaatt taaagcatat
     9421 tttacttagt gatagcgaaa aagaagttgc taaagcttat agagcttggg ggcttaagaa
     9481 aaattacgga aaagaatatg aaggcatcat tcgttctact tttgttatcg atgaaacagg
     9541 taagattgct caaatttata gtaatgttcg tgtaaaagat catgctttaa aagtgcttga
     9601 aagtctttaa tgctggtaca tatttgttgt agtgtagata gtcattattt tattgaagaa
     9661 cttagaaaga cttatcctga tgaaaaaatc ataggatatt tttatgatcc aaatatccat
     9721 cctttaagcg aatacgaact aagattttta gatgtaaaaa gatcttgtga taaacttggc
     9781 attaagttat ataagggcga gtatgagtat gaaaaatggc ttaatgctgt gcgtggttat
     9841 gaagatgagc ctgaaaaagg tgcaaggtgt gaaatttgct ttgatgtaag aatgggatct
     9901 agtgttaaat ttgctgctaa aataggagaa aaaaagctta ctactacgct tttaactagc
     9961 cctaaaaaag atttagaaca gttaaaaaat gctttacaaa aagaatgtga gccttatggg
    10021 gtagagtttt tagctcctga ttttcgtaaa aatggcggca ctcaaaggca gtttgcttta
    10081 gcaaaaaaag aaatgctcta tcatcaaaat tattgtggtt gtatttatgg acttaaaaaa
    10141 caaaaacaag ataagaattt cattgatgaa ttaatgtctt ctgtaaataa gcaaatttta
    10201 cctgcaagta tagaagcaag aatagctctt tataaaaaag tagttttatg ggaaaaaaag
    10261 ggtataaaat ttgaaatttt aagagagaaa tttttaaatt atcgtctttt aagcgctttg
    10321 ataaaattag ataaaaagcc cgttaaatct catattttat tttattcgca ttttaaaaac
    10381 gcttatacaa gattttcttt agatgaggaa agtttaaaac aaaatttaaa agaaggcttt
    10441 tatagaagta ccaaagatga aatggttttt gtggaatttt ggcgttttaa tgcgtttttt
    10501 aaaaacaaat ggaaaaattt tgaagatttt ttaaaaaaac ctttaagtat tcaagcagaa
    10561 gttagatggc gtaatcaagt ttttggagct tataatctta gccctgtgat tatacttgaa
    10621 gaaatttttc cttcaagata tgaagtgata gcaaaaagtg aaa
//
LOCUS       DAZBIH010000049        10460 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.050, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000049 DAZBIH010000000
VERSION     DAZBIH010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10460)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10460)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10460
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.050"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            24..632
                     /gene="plsY"
                     /locus_tag="ACHFOB_001057"
     CDS             24..632
                     /gene="plsY"
                     /locus_tag="ACHFOB_001057"
                     /EC_number="2.3.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0008374 - O-acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HFN5799867.1"
                     /translation="MENLIIYAFIYLLGSIPFGLILAKFFAKTDIKKEGSKSIGATNV
                     LRVVKEKNPKLAKKLAIATIILDFAKAAIPLLILKFLHYDQALLWSVAVLAIFGHCFS
                     IYLLFEGGKGIATGAGAMIVLLPLEVLTAFIVWVVIGKIFKISSLASLAALLAFVISS
                     FIFNYDLEIHTHAPVFIIAFIIIYKHLPNIKRLIFKEECKVI"
     gene            617..934
                     /gene="folB"
                     /locus_tag="ACHFOB_001058"
     CDS             617..934
                     /gene="folB"
                     /locus_tag="ACHFOB_001058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HFN5799868.1"
                     /translation="MQSHIKIKFHFKCIIGILDFERRKKQKIIIKLKAKANEFLNYAE
                     VITKIKKWYKKEEFYTLEESLDFVSLNLKKDFPNLTNLNIKIFKPHIIKNATVGVKLK
                     KKY"
     gene            1013..1684
                     /gene="hsrA"
                     /locus_tag="ACHFOB_001059"
     CDS             1013..1684
                     /gene="hsrA"
                     /locus_tag="ACHFOB_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homeostatic response regulator transcription
                     factor HsrA"
                     /protein_id="HFN5799869.1"
                     /translation="MRILVIEDEISLNKTIIDNLNEFGYQTDSSENFKDGEYFIGIRH
                     YDLVLANWTLPDGDGAELVNTIKHKSPRTSVMIMSSKTDKETEIKALKAGADDFVKKP
                     LDFDILLARIEARLRLGGTNVIKIEDLVIDPDEEKITYKGQDIELKGKPFEVLTHLAR
                     HSDQIVSKEQLLDAIWEEPELVTPNVIEVAINQIRQKMDKPLNISTIETVRRRGYRFC
                     FPKKS"
     gene            1797..2042
                     /gene="fdxB"
                     /locus_tag="ACHFOB_001060"
     CDS             1797..2042
                     /gene="fdxB"
                     /locus_tag="ACHFOB_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhL family 4Fe-4S dicluster ferredoxin"
                     /protein_id="HFN5799870.1"
                     /translation="MSLLITKDCVCCDACREECPDEAIYENSPIYVIDPDLCSECVND
                     FSEPACIVACPYECIIPDPDNVETIEELKLKHRDREF"
     gene            2042..3502
                     /locus_tag="ACHFOB_001061"
     CDS             2042..3502
                     /locus_tag="ACHFOB_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ppx/GppA phosphatase family protein"
                     /protein_id="HFN5799871.1"
                     /translation="MAKKTAVVDLGSNSIRMVIFEKTSRYGFYTTCEYKRKVRLGENA
                     YNNGKILQEEAMQRAEDALAFFKQCALKHKCKKIFIVGTSALRDAPNSKNFIKRIKDN
                     LSLNIRCIDGKSESYLGGLAALNLLSPFKDGTTLDIGGGSSELCLIKNNRIISCISLD
                     IGTVRLKELFYDTGKMDSLEEFIKPILEQIPKEFCNQNLIAIGGSLRAISNSIMQKNS
                     YPLKNLHDFRYMLDEEKGHILKIFNSNLDSLINFGIKKDRFDTIKEGIFIFLKIAEKI
                     KAKQVITSGVGIREGVYLQDLLRPKITFPPNFNPSLKCLQDKFLQSKQKNKTPHFALQ
                     IFTTLKNLHKLNDNYKHTLLNAAKLCHIGEYLNFYFANEHSAHFVLGGLNYGFSHKEK
                     ALIASIIKLNGKKVNPYNLEPYKQLLPNIHTISWLNFILCLAKTLSTNEDKIDFAFAN
                     NTLYIYQENKILNLPKDELKKIAKPATIALAINQKI"
     gene            complement(3499..4296)
                     /locus_tag="ACHFOB_001062"
     CDS             complement(3499..4296)
                     /locus_tag="ACHFOB_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799872.1"
                     /translation="MRLLVLFFLILPLYSVELISYNIYDRNDRVDLMLSFDNAYNGKI
                     SQKKEKNLTLLTFSDLTYSKDELKELNSQLVDKISISSKNNNTYIMLQNKQNINLELS
                     SINDKFGVRIRAIEQGKANIESVPTTTANNSQELMPKPKSTSLEGYDYTNYILVMLIL
                     VILLIVLWWFKKTMVYKNNNVSRDFTMIFQRFLDKNNQLVVFDHANKRYTMIIGNSNV
                     LLESVEIPEEQTIKHTEKTEKNFDSFFEENKKRIQNLIEQRQKGKKS"
     gene            complement(4297..4605)
                     /gene="fliN"
                     /locus_tag="ACHFOB_001063"
     CDS             complement(4297..4605)
                     /gene="fliN"
                     /locus_tag="ACHFOB_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HFN5799873.1"
                     /translation="MSDDIEFNIHHGLLQSYEDILDITVDFVSELGTTNMSVAELLKL
                     EVGSVIDLEKPAGESVELYINKRIFGKGEVMVYEKNLAIRINEILDSKTVLQYFKKEI
                     "
     gene            complement(4605..5027)
                     /locus_tag="ACHFOB_001064"
     CDS             complement(4605..5027)
                     /locus_tag="ACHFOB_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheX"
                     /protein_id="HFN5799874.1"
                     /translation="MLKILEYSITHFCEHILRLRIEAAQDISGELYGASIPIMGKSEG
                     ECNFYLFFPKEFLKKIAEILINDEKFKEDDWCDLTKECANQIIGYAKNLLNDAKGDDE
                     YKLGIPEYLGKVDFSEIVLDEALTYKFENCYFRIGYCK"
     gene            complement(5098..5847)
                     /gene="trpA"
                     /locus_tag="ACHFOB_001065"
     CDS             complement(5098..5847)
                     /gene="trpA"
                     /locus_tag="ACHFOB_001065"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HFN5799875.1"
                     /translation="MVDFRKFYKENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILEL
                     GVAYSDPIADGEIIADAAKIALDQGMDIHSVFELLARIKTKKALVFMVYYNLIFSYGL
                     EKFVKKAKSLGICALIVPELSFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKH
                     AKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFTNLPIFVGFGIQNNQDVKRMRKVA
                     DGVIVGTSIVKCFKQGNLDIIMKDIEEIFKK"
     gene            complement(5840..7018)
                     /gene="trpB"
                     /locus_tag="ACHFOB_001066"
     CDS             complement(5840..7018)
                     /gene="trpB"
                     /locus_tag="ACHFOB_001066"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HFN5799876.1"
                     /translation="MKKAYYGDFGGQFLPESAMFALNELEGAFLKFSKDKLFKKELNE
                     LLKTYVGRPTPLYFARNLSKKYQHEIYLKREDLNHTGAHKINNAIAQALLAKKMGKKK
                     IIAETGAGQHGLATATAAALLGLECEIYMGATDVQRQALNVYKMELLGAKIHAVQSGL
                     KTLKEATTAAIQAWVGDIKNIFYVVGSAVGPYPYPKMVMHFQSIIGKECKMQLQKLNK
                     KVDYIIAAVGGGSNAAGIFYDFIKDENVKLIGIEAGGLGIDTPYHAATLNKGKTGIIH
                     GMKTKVLQDDLGNILPVHSVSAGLDYPGIGPLHAFLFESKRAQYHAISDEECMQALKL
                     LCKEEGIIAAIESSHALAFLEKLCPTLKKKSVIVVNLSGRGDKDMQMIRDYKKGVIYG
                     "
     gene            complement(7015..7614)
                     /gene="trpF"
                     /locus_tag="ACHFOB_001067"
     CDS             complement(7015..7614)
                     /gene="trpF"
                     /locus_tag="ACHFOB_001067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HFN5799877.1"
                     /translation="MLKLKICGIKDEKNAKDLAFLNIDFFGLIFAKSPRRVSLEQARN
                     LSAIFHEKDKKVVGVFVDENLEQILRCIKEAKLDGIQIYRTITKEEFEILKVQNVFVW
                     QVISVENSLDLKSEIFANLVLFDAKGILKGGNGISFDWTLLGSYTKDFALAGGIGLDN
                     IHKAVQTGAKILDLNSKLEDEKGLKDINKIKQILKELKK"
     gene            complement(7601..9202)
                     /gene="trpD"
                     /locus_tag="ACHFOB_001068"
     CDS             complement(7601..9202)
                     /gene="trpD"
                     /locus_tag="ACHFOB_001068"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HFN5799878.1"
                     /translation="MILLIDNYDSFVFNVKSMLEQLSNDEILVRRNDAISLSEIKNLN
                     PTHIILSPGPKHPSQSGICLEIFKARLNIPVLGICLGHQALALAFDSLVVKMQEPMHA
                     KNSLIKQCRENELFSNLPSNFSVMRYHSLEVKQLSDELEILALDEKGVIMALGHKNLP
                     YYGVQFHPESYFSEYGLQLFSNFLKQDIKKPQKQENPLSFYLQKMSENHFLQSDDFEQ
                     ICKIIMSKDYEILQVAALLILITEKSLNEKSLSAFVRQILRYSQTFSDESEMIDICGT
                     GGDGFKSINVSTTSAFILAALGVKVAKHGNRAISSSSGSTDVLEALNITTPNTLESVL
                     KQLNNQGLSFLHAPFFHPLVGELKEIRSRLGVRTVFNVLGPLLHPNLKLKYQLMGNYH
                     APVHRLLIEVLKNLGRKKALVVRGNDGMDELSICDESKIYELCEGEILEYSICPEQFG
                     FKRAFHSEIIGSSAYDNAKDLKDILSGRMQGAKFDLVVLNAMFALYTANKASSPLVAK
                     DMILEAIYSGKVIEYFKEYQAYAKA"
     gene            complement(9199..10449)
                     /gene="trpE"
                     /locus_tag="ACHFOB_001069"
     CDS             complement(9199..10449)
                     /gene="trpE"
                     /locus_tag="ACHFOB_001069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I family
                     protein"
                     /protein_id="HFN5799879.1"
                     /translation="MFVKNVNFYYRQILEKFENSYFAEDLTKVIIGIDCDYLDANELS
                     FSEFKAKYYEALSKNKICDFAGFFGVFSANFVSLFEKIPLSSKKNYDFPLFLFANAKA
                     YLIYEKNSKMFFKFGASKYFEYLKDDIEPMKKKQKNDFEILNSLEDEKNDFLKMCEKA
                     KEYLLSGDIFQVVLSKQLCIKHQVNAFDYYESLSALNPSAYMFYFPSKYGVVLGSSPE
                     FLLKIKKREIYLAPIAGTRNLENNCDLLALEKDLLSDEKELSEHKMLVDLARNDASKF
                     GTQTRVENLFSIIKNKFVMHIVSEVYANMKEDASIFDVIEAVFPAGTLSGAPKIRALE
                     ITSELEDCDRGIYGGAVGFLNFNEDITLAILIRCAFFTQDKAYLASGAGIVLQSESQK
                     EYAEICAKRKALLVAFENLKKENQ"
BASE COUNT         3695 a         1807 c         1282 g         3676 t
ORIGIN      
        1 taagatgatt tgaaaaggat attatggaaa atttaataat ttacgctttt atatatcttt
       61 taggttcaat cccttttggg ctaatcctag ctaaattttt tgctaaaact gatatcaaaa
      121 aagaaggttc aaaaagtata ggggcaacca atgttttaag agtagtaaaa gaaaaaaatc
      181 ccaaactagc aaaaaaactt gccattgcta caataatttt agattttgca aaagcagcta
      241 ttcctttact aatcttgaaa tttcttcatt atgatcaagc tttgctttgg agcgtcgcag
      301 ttttggctat ttttggacac tgtttttcaa tttacttgtt atttgaagga gggaaaggca
      361 tagcaacagg agcaggcgct atgatagttt tacttccatt ggaagtgctt acagcattta
      421 ttgtgtgggt agttattgga aaaattttta aaatatcttc gctagcttct ttagcagcgt
      481 tacttgcttt tgttataagt tcttttatat ttaattatga cttagaaatt catacacatg
      541 cacccgtttt cattatcgct tttattataa tatataaaca tctacctaat attaaaagat
      601 tgatttttaa agaagaatgc aaagtcatat aaaaataaaa tttcacttta agtgtatcat
      661 tggtatatta gatttcgaaa gaagaaaaaa acaaaaaatt attatcaaac ttaaagctaa
      721 agcaaatgaa tttttaaatt atgcagaggt aattaccaaa attaaaaaat ggtataaaaa
      781 agaagaattt tacacccttg aagagtcttt agactttgta agcttaaatt taaaaaaaga
      841 ttttcctaat ttaaccaatc ttaacataaa aattttcaaa ccccatataa taaaaaatgc
      901 tacagttggg gttaaattga aaaaaaaata ttaatttttt tttaaagata tctaaacatt
      961 tacttaagct atgatataat tctttaaatt tttcttaata aggatagaac aaatgagaat
     1021 tttagttata gaagatgaga ttagcctaaa taaaacaatt atagacaatc ttaatgaatt
     1081 tggttatcaa accgattctt ctgaaaattt taaagatgga gaatacttta tcggcattag
     1141 acattatgat ttagttttag caaactggac tttacctgat ggagatggag cagaacttgt
     1201 taataccatt aaacataaat ctccaagaac ttcagttatg attatgtctt caaaaacaga
     1261 caaagaaaca gaaatcaaag ctttgaaagc tggagctgat gattttgtta aaaaaccttt
     1321 agattttgat attctactcg caagaattga agcaagacta agacttggcg gaaccaatgt
     1381 tattaaaatt gaagacttag ttattgatcc agatgaggaa aaaattactt ataaaggtca
     1441 agatatagaa cttaaaggaa aaccttttga agttttaacg cacttagcaa gacattcgga
     1501 tcaaattgta tccaaagaac aacttttaga tgccatctgg gaagaacctg agctagtaac
     1561 tccaaatgtt atcgaagtag ctatcaatca aattcgtcaa aaaatggata aaccattaaa
     1621 tatatctacc atagaaacag ttcgtcgtag aggataccgt ttctgcttcc ctaaaaaatc
     1681 ttaacaattt tgcaccttcg gtgcaaaaaa tttatcttta tttctatttt tatattttat
     1741 ttaagtttgg ttattgtata aactaaaatt attttttaaa tttttgaaag gttatgatgt
     1801 ctcttttaat tacaaaagac tgcgtatgtt gtgatgcttg cagagaagaa tgtcctgatg
     1861 aagctattta tgaaaatagt ccaatttatg taatagaccc tgatctttgt tcagagtgcg
     1921 ttaatgattt ttcagagcct gcctgtattg ttgcttgccc atatgaatgt atcattcctg
     1981 atcctgataa tgtagaaact atagaagaat taaaactcaa acatagagat agagaatttt
     2041 aatggcaaaa aaaacagccg ttgttgatct tggctcaaac tccattagaa tggtgatttt
     2101 tgaaaaaact tctagatatg gtttttatac aacttgcgaa tacaaacgca aagtaagact
     2161 tggagaaaat gcttataata atggcaaaat tctccaagaa gaagccatgc aaagagccga
     2221 agatgcctta gcttttttca aacaatgcgc tttaaagcat aagtgcaaaa aaatatttat
     2281 agtaggcaca tcagccttaa gagatgcccc aaattcaaaa aatttcatta aaagaatcaa
     2341 agataatctg tctttaaata tacgctgtat agatggaaaa agcgaaagtt acttaggtgg
     2401 tcttgcagct ctaaatttat taagtccttt taaggatgga accactttag acataggtgg
     2461 tggttctagt gaattgtgtt taataaaaaa taatagaatt atttcttgca tatctcttga
     2521 tattggcact gttaggctaa aagaattgtt ctatgatact ggaaaaatgg attctttaga
     2581 agaatttata aaaccaattt tagaacaaat tcctaaagaa ttttgcaatc aaaaccttat
     2641 tgcaataggt ggaagcttaa gagcaatatc taattccatc atgcaaaaaa attcctatcc
     2701 actgaaaaat ttacatgatt ttcgctatat gctagatgaa gaaaaaggac atattttaaa
     2761 aatttttaat tcaaacttag actctttaat caattttggc ataaaaaagg atcgttttga
     2821 taccattaaa gagggtatat ttattttttt aaagattgcg gaaaaaataa aagccaaaca
     2881 agttatcacg agtggggttg gaatcagaga aggagtttat ttgcaagatt tacttcgtcc
     2941 taaaatcaca tttccaccaa atttcaatcc tagtttaaaa tgtttgcaag ataaattttt
     3001 acaatcaaaa caaaaaaata aaactccaca ttttgctctg caaattttta caacccttaa
     3061 aaatcttcat aaacttaacg ataactataa gcatacttta ctaaatgctg ccaaattatg
     3121 ccatattgga gaatatttaa atttctattt tgctaatgaa cactctgctc attttgtact
     3181 aggtggatta aattatggat tttcgcataa agaaaaagct ttaattgcta gtattattaa
     3241 gcttaatgga aaaaaagtta atccttataa tcttgaaccc tataaacaac ttttacccaa
     3301 tattcatacc atttcatggc ttaattttat tttgtgctta gctaaaactt taagcacaaa
     3361 tgaagataag attgattttg cttttgcaaa caatactctt tatatatatc aagaaaacaa
     3421 aattcttaat ttacccaaag atgagctcaa aaaaattgca aaaccagcta ccatagcatt
     3481 agcaatcaat caaaaaattt aagatttttt acctttttga cgctgctcta taagattttg
     3541 aattcttttt ttattctctt caaaaaaaga atcaaaattt ttctctgttt tttctgtatg
     3601 ttttattgtt tgttcctctg gaatttcaac actttctaaa agcacattgg aattacctat
     3661 tatcattgta taacgtttat tagcgtgatc aaaaacaaca agttgattat ttttatctaa
     3721 aaatctttgg aaaatcatag taaaatctct agaaacattg ttatttttat aaaccatagt
     3781 ctttttaaac caccaaagca ctattaacaa aataactaaa atcagcatta ctaagatata
     3841 atttgtataa tcataccctt ctaaacttgt actttttggt ttaggcatta attcttgaga
     3901 attattcgca gttgttgtag gtacagattc gatatttgct ttcccttgct ctatagctcg
     3961 tatccttact ccaaatttat cattgataga gctaagttct aaattaatat tttgtttgtt
     4021 ttgtagcata atataggtat tattattttt agaactaata ctaattttat ctacaagttg
     4081 agagttaagt tcttttaatt catctttaga atacgttaaa tcactaaaag ttaaaagagt
     4141 taaatttttt tctttttttt gagaaatctt gccattataa gcattatcaa aagaaagcat
     4201 taaatctact cggtcatttc tatcgtagat attataacta atcaactcaa cactatataa
     4261 aggtaaaatt aaaaaaaata atactagcaa tctcatttaa atttcttttt taaagtattg
     4321 aagcacagtc ttagaatcca aaatttcatt aattcttata gcgagatttt tttcataaac
     4381 cataacctca cctttgccaa aaattctttt attgatataa agctcaacgc tttctccagc
     4441 aggcttttca agatcaataa ccgagcctac ttcaagtttt aaaagctccg ctacactcat
     4501 atttgtagtt ccaagctcgc ttacaaaatc tactgtaata tctaagatat cttcataaga
     4561 ttgcaaaagc ccatgatgaa tgttaaactc tatatcatcg ctcattattt gcaatatcct
     4621 attctaaaat aacaattttc aaatttataa gttaaagctt catctagaac tatttcagaa
     4681 aaatcaactt ttcctaaata ttccggaatt ccgagtttat actcgtcatc acccttggca
     4741 tcatttaaca aatttttagc ataacctata atctgattgg cgcattcttt agttaaatcg
     4801 caccagtcat cttctttaaa tttttcatca ttaattaaaa tttctgcaat tttttttaaa
     4861 aattcttttg gaaaaaataa ataaaaatta cattctcctt cgcttttgcc catgatagga
     4921 atactcgctc cataaagttc accgcttata tcttgagctg cttcaatgcg aagtcttaag
     4981 atatgctcgc aaaaatgagt gatggaatac tcaagaatct ttaacataac taccaccttt
     5041 ataaaaaact taatttaaaa ttatagtaaa tataaaataa aaatatgttt taaaatttta
     5101 ttttttgaaa atttcttcaa tatctttcat tattatatcc aaatttcctt gtttaaaaca
     5161 ctttactatg ctagttccca caatcactcc gtcagcaact tttctcattc tttttacatc
     5221 ttgattattt tgaatgccaa agcctacaaa aataggcaaa tttgtaaaag atctgatttc
     5281 ttttacttta tcttgtaaga ttgcttcttc gacacttttc gtacctgtaa tacctatgct
     5341 tgctaataaa taaataaaac ctttagcatg ttttactaac tttttaaccc tttctttagg
     5401 ggttgtaaca cttacaagtg taattaaagc tatattatat ctttcacact ctttaattaa
     5461 atcatcactt tcttcaaaac tcaattcagg cacaatcaaa gcacaaatcc ctaaagattt
     5521 tgcttttttc acaaattttt ccaagccata agaaaaaatt aaattataat aaaccataaa
     5581 aaccaaagct tttttagttt ttatcctagc taaaagctca aaaacactat gaatatccat
     5641 gccttgatca agagctattt ttgccgcatc tgcaataatc tcaccatcgg caataggatc
     5701 actataagca acaccaagtt ctaaaatatc aatagggctt tgatccaatc tttgcaaaaa
     5761 agcttcactt gtttgaagat ttggataacc taaaaccgta taagccacat ttgcattttc
     5821 tttataaaat tttctaaaat caaccataaa tcaccccttt tttataatct ctaatcattt
     5881 gcatatcttt atctcccctg cctgaaagat ttactactat cacgcttttc ttttttaaag
     5941 ttggacaaag tttttctaaa aatgccaaag catgcgaact ttcaatcgct gcaataatac
     6001 cttcttcttt acaaagtaat tttaaagcct gcatacattc ttcatcactt atagcatgat
     6061 attgcgctct tttgctttca aataaaaaag catgcaaagg accaattcct ggataatcaa
     6121 gccctgcaga aacactatgt acaggcaaga tattgcctaa atcatcttgt aaaaccttgg
     6181 ttttcatacc gtgaataatg cctgtttttc ccttatttaa agtcgctgca tgataaggcg
     6241 tatcaatgcc aagcccccct gcttcaatac ctataagttt aacattttca tctttgataa
     6301 aatcataaaa aatcccagct gcattgcttc cacccccaac agctgcgata atataatcta
     6361 cttttttatt gagtttttga agttgcattt tgcattcttt tcctataata ctttgaaaat
     6421 gcattaccat tttaggataa ggataaggac ctaccgcact tccaaccaca taaaaaatat
     6481 ttttaatatc tccaacccaa gcttgaatag ccgcagtagt agcttctttt agagttttaa
     6541 gcccactttg tactgcatga attttagcac ccaaaagctc cattttataa acatttaaag
     6601 cctgtctttg cacatcggtt gcccccatat aaatttcaca ttcaagtcct aaaagtgctg
     6661 ctgcagtggc tgttgcaagc ccgtgttgac ctgctcctgt ttctgctatg atttttttct
     6721 ttcccatttt ttttgctaaa agggcttgag cgatggcatt attgatttta tgtgctccgg
     6781 tatgatttaa atcctcgcgt tttaaataaa tttcatgctg atattttttg cttaaatttc
     6841 tagcaaaata aagtggagta ggacgcccta cataagtttt taaaagctcg tttaattctt
     6901 ttttaaagag tttatcttta gaaaatttca aaaaagcacc ttctagctca tttaaagcaa
     6961 acattgcact ttcaggcaaa aactgcccac caaaatcccc ataatacgct tttttcattt
     7021 tttcaactcc tttaaaattt gttttatttt gttgatatct tttaagcctt tttcatcttc
     7081 aagttttgaa ttaagatcta aaattttagc tcccgtttgt acagccttat gaatattatc
     7141 caaacctatg cctccagcta atgcaaaatc tttagtataa gaacctaata aagtccaatc
     7201 aaaacttatt ccattaccgc cctttaaaat tcccttagca tcaaaaagta ctaaattagc
     7261 aaaaatttca ctttttaaat ctaaactatt ttccacacta atcacctgcc aaacaaaaac
     7321 attttgcacc tttaaaattt caaattcttc tttggtaata gtgcgataaa tttgtatccc
     7381 atcaagctta gcttctttaa tacatcttaa aatttgttcc aaattttcat ctacaaaaac
     7441 accgacaact tttttatctt tttcatgaaa aattgcactt aaatttctcg cttgttctaa
     7501 actcactctt cttggacttt tagcaaaaat aagtccaaaa aaatcaatat ttaaaaaagc
     7561 taaatctttg gcattttttt catctttaat accacaaatt ttaagcttta gcataagctt
     7621 gatactcctt aaaatattct ataaccttac ctgaataaat ggcttctaaa atcatatctt
     7681 tagccactaa aggcgaactt gctttattgg ctgtataaag tgcaaacata gcatttaaaa
     7741 ctaccaaatc aaattttgcc ccttgcattc taccgcttaa aatatctttt aaatctttag
     7801 cgttgtcata tgcactagat cctatgattt cactatgaaa agctctttta aaaccaaatt
     7861 gttcaggaca gatagaatac tctaaaattt ctccttcaca aagctcataa attttacttt
     7921 catcgcaaat actaagctca tccataccat catttcctct taccactaaa gcttttttgc
     7981 gtcctaaatt ttttaaaacc tctatcaaaa gcctatgcac aggtgcgtga taatttccca
     8041 taagttgata ttttaacttt aaattagggt gcaataaagg acctaaaaca ttaaaaaccg
     8101 ttcttactcc aagtcttgat ctgatctctt taagttctcc tactaaagga tgaaaaaatg
     8161 gagcatgtaa aaaactaagc ccttgattat ttagttgttt taaaactgat tctaaagtgt
     8221 ttggagtagt tatatttaaa gcttctaaca catctgtact tccgctagaa cttgaaatgg
     8281 cacgatttcc gtgtttggct acttttactc ctaaagctgc taaaataaaa gcactagtcg
     8341 tagaaacatt gatactttta aaaccatctc cacctgttcc acaaatatca atcatctcac
     8401 tctcatcact aaaagtttga gaatatctta aaatttgtct tacaaaagca cttaaagatt
     8461 tttcatttaa ggacttttca gtgattaaaa tcaacaaagc cgctacttgt aaaatttcat
     8521 aatctttaga cataataatc ttacaaattt gctcaaaatc atcgctttgt aaaaaatgat
     8581 tttcactcat tttttgcaaa taaaaactta aaggattttc ttgtttttgt ggttttttta
     8641 tatcttgttt taaaaaatta gaaaaaagtt gtaagccata ttcactaaaa tagctttcag
     8701 gatgaaattg cacaccataa taaggtaaat ttttatgtcc caaagccata atcacaccct
     8761 tttcatcaag ggctaaaatt tcaagctcat cactaagctg tttaacctct aaagaatgat
     8821 aacgcattac actaaaattt gaaggcaaat tagaaaataa ttcattttcc ctgcactgtt
     8881 ttatcaaaga attttttgca tgcataggct cttgcatctt aaccactaaa gaatcaaaag
     8941 ctaaagctaa agcttgatgt cctaagcaaa tgcccaaaac agggatatta agccttgctt
     9001 taaaaatttc aagacaaatc ccactttgac ttggatgctt tggaccagga cttaaaataa
     9061 tatgagtagg atttaaattt ttaatttcac tcagagaaat tgcatcattt cttcttacta
     9121 aaatttcatc attgctgagt tgctctaaca tgcttttaac attaaaaaca aaagaatcat
     9181 aattatcaat taaaagtatc attgattttc cttttttaaa ttttcaaaag ctaccaaaag
     9241 cgccttgcgt ttagcacaaa tttctgcata ttctttttga ctctcacttt gcaaaacaat
     9301 acccgcccca cttgccaaat aagccttatc ttgagtaaaa aaagcgcaac ggattaaaat
     9361 cgctaaagtt atgtcttcgt taaaatttaa aaatcctacc gcaccaccat aaattccacg
     9421 atcgcaatct tcaagctcgc tagtgatctc taaagctctt attttaggag ctccgcttaa
     9481 agttcccgct ggaaaaactg cttcaatcac atcaaaaata ctcgcatctt ctttcatatt
     9541 ggcatacact tcactcacta tgtgcattac aaatttattt ttaataatag aaaaaagatt
     9601 ttccactctt gtttgagtgc caaatttaga agcatcattt cttgctaaat ctacaagcat
     9661 cttatgttca ctaagttctt tttcatcact taaaagatct ttttctaaag ctaaaagatc
     9721 acagttattt tccaaatttc tagttccagc aataggggct aaataaatct ctcttttttt
     9781 aattttcaat aaaaactctg gagaagaacc caaaacaaca ccatatttac ttggaaaata
     9841 aaacatataa gcgcttggat ttaaagcact taaactctca taataatcaa aagcatttac
     9901 ttgatgtttg atacaaagtt gcttacttaa gaccacttga aaaatatctc cacttaaaag
     9961 atattctttg gctttttcgc acatttttaa aaaatcattt ttttcatctt ctaaagaatt
    10021 taaaatttca aaatcatttt tttgtttctt tttcattggt tcaatatcat cttttaaata
    10081 ttcaaaatat tttgaagcac caaatttaaa aaacatcttg ctatttttct cataaatcaa
    10141 ataagcctta gcattggcaa ataaaaataa aggaaaatca taatttttct tagaagaaag
    10201 tggaattttt tcaaacaaag atacaaaatt tgcactaaaa actccaaaaa atccagcaaa
    10261 gtcgcaaatt ttattcttgc ttaaagcttc ataatatttt gccttaaact cgctaaagga
    10321 taattcatta gcatctaaat aatcacaatc aatccctata attaccttag tcaaatcctc
    10381 tgcaaaataa gaattttcaa atttttcaag gatttgtctg taataaaaat ttacattttt
    10441 aacaaacata ataaaccttt
//
LOCUS       DAZBIH010000050        10009 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.051, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000050 DAZBIH010000000
VERSION     DAZBIH010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10009
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.051"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..308
                     /locus_tag="ACHFOB_001070"
     CDS             <1..308
                     /locus_tag="ACHFOB_001070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HFN5799880.1"
                     /translation="FQYKKLFSFIDSGLELSQAFKKIDIFDSLVFSMLSVAMKSGRLE
                     VLSEEIAKYYQQKSENLMDRFLVFLEPMMTLFVAFLVLFLALGIFLPMWELSSGVNF"
     gene            complement(305..1069)
                     /locus_tag="ACHFOB_001071"
     CDS             complement(305..1069)
                     /locus_tag="ACHFOB_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TSUP family transporter"
                     /protein_id="HFN5799881.1"
                     /translation="MGFEHLDTIYYFILFFVALFAGFIDSIVGGGGLITLPALIACGI
                     PAHLSLATNKLQSVFGSFTATLTYFKSTTLPHLAWGVFFTALGAAIGSYSVLFVKDEQ
                     LKLIILIFLTLTFLYTALRPNLGKHESEPKIKNIKIFHLICGLTLGFYDGFLGPGTGS
                     FWIFACVMLLGFNMRKASINTKILNFTSNIIALAIFLWQYELLWAVGLLMGVGQVLGA
                     YLGSKLVLKTNGKFIKTLFLIVVGATIIKVAWDYFS"
     gene            complement(1073..1835)
                     /locus_tag="ACHFOB_001072"
                     /pseudo
     CDS             complement(1073..1835)
                     /locus_tag="ACHFOB_001072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344849.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0003674 - molecular_function [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02757 family protein"
     gene            complement(1852..3678)
                     /gene="flgK"
                     /locus_tag="ACHFOB_001073"
     CDS             complement(1852..3678)
                     /gene="flgK"
                     /locus_tag="ACHFOB_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009424 - bacterial-type flagellum hook
                     [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HFN5799882.1"
                     /translation="MGIFGTLYTGVTGLKASEVQIATTGNNISNANATFYTRQRVVQT
                     TNGYITTGGVQVGTGTAIESIVRLHDEYSYYKLKGASNQLEYTKYMASTLQEIAQRFP
                     DLQNTGILKDLENYNKAWNDFASNPNENATKIALVKASQTLTESVNNTFATLDKIQKK
                     VNDDIKNTVDEINRIGEEIATINKQIYGQEALPTEHANELRDRRDELELTLSKLVSAV
                     ASKNEINQDNRLDTTITDPGHQYNLSIEGFSIVDGINFHPLKLDYDDKNKSYSIYYET
                     PDEKVRDLTAKISGGQLGAQLDLRGRNYSKSEGKYEDGIIQGYMDSLDTFAKTMINET
                     NNLYASSAKSSVTSDYLSGLKGDIPLVNYDRTIQPGSFDIVIYDDKGDKKLTKTITID
                     VNTTMNDIMRQINANTDDNNNKNSNDDVDDHINASFSYDAKTGDGLFQINAKSGFKVA
                     IEDKGTNFAGAFSIGGFFSGTDASNMKVKDSILNDPSTVRASLSGVDSGNDMANKIIQ
                     LQYEKVNFYNEDGTIDNLTMEEYYRKLTGKIASDGENNNVVNSSNETLYNSVYSEYQS
                     KSGVNTNEELAALIQYQSSYGAAAKIVSTVDQMLDTLLGLKS"
     gene            complement(3688..4122)
                     /locus_tag="ACHFOB_001074"
     CDS             complement(3688..4122)
                     /locus_tag="ACHFOB_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FlgN"
                     /protein_id="HFN5799883.1"
                     /translation="MLKQRLDEVNAILAKLIALTEEDIENIKVAKHESVTPSVEEKNK
                     LIAEFITAKKQLDVALVELNNSSTKGLSELLDDEDKQKLDLLKKNLQNLHSKNKEYAK
                     FVLIVKDFLDGLVNKMFDINDGTNNAYGDKKTNPESIFKINV"
     gene            complement(4165..4362)
                     /gene="flgM"
                     /locus_tag="ACHFOB_001075"
     CDS             complement(4165..4362)
                     /gene="flgM"
                     /locus_tag="ACHFOB_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis anti-sigma factor FlgM"
                     /protein_id="HFN5799884.1"
                     /translation="MINPVQQSYVANTTLNTNRIDKETKTNDTQKTENDKASKIAEQI
                     KNGTYKIDTKATAAAIADSLI"
     gene            complement(4425..4766)
                     /locus_tag="ACHFOB_001076"
     CDS             complement(4425..4766)
                     /locus_tag="ACHFOB_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799885.1"
                     /translation="MKVDNFLNTYSMNSALLDRAAKARSLESSIKINDNDIVTKTKED
                     EALKEQTDAFEAFFLKQVLDVSLKSQNSLFGKDASDEIYSSMYNDTMSKALSGGMGFS
                     KLLYDFLKERG"
     gene            complement(4766..5812)
                     /locus_tag="ACHFOB_001077"
     CDS             complement(4766..5812)
                     /locus_tag="ACHFOB_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009428 - bacterial-type flagellum basal
                     body, distal rod, P ring [Evidence IEA];
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body P-ring protein FlgI"
                     /protein_id="HFN5799886.1"
                     /translation="MRVLTIFLLFMTSIFAVQIKDVANTVGVRDNQLIGYGLVVGLNG
                     SGDGTSSKFTLQSISNLLQGMNIKVDPNDIKSKNTAAVMVTAKLPAFAKSGDKLDITV
                     SSMGDAKSLQGGTLLLTALRGIDGEIYAIAQGSISTGGLTPRPGGAGSHSTAATVMGG
                     ANVEREIPQNFSQNSDLTLSLKVADFKTANDIERVLNTVFGEEVAKAIDSRTVKLKKP
                     EDLSNVDFMARVLEQDIAYKPQSKVIIDERTGTVIAGVDVEVEPVLITHKDITIKIDP
                     NNNAVANQNEIDMKDGGFVDPSSNTLRINNAKSTVANIARMLNKLGATPNDIIAIMEN
                     LKRAGAINADLEII"
     gene            complement(5871..6554)
                     /gene="rsmD"
                     /locus_tag="ACHFOB_001078"
     CDS             complement(5871..6554)
                     /gene="rsmD"
                     /locus_tag="ACHFOB_001078"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052913 - 16S rRNA
                     (guanine(966)-N(2))-methyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HFN5799887.1"
                     /translation="MNDEFISVKDFFNHNEKRKKFLQKQEIKPLKEKTKKTKETKLYT
                     NIESGKYKGKKLLLPSLTTTRSTKSIVKSCVFNVIREDLRSKIFIEAFGGSALIAAEA
                     LSNHALKAYAIELDVKAYKIALENAKNIDPNLEVIHANTFEILPKLIENSKNEIILYL
                     DPPFDTREGFSDIYEKIYHFLENLDLKTLNLIIFEHHSTIKTPEKIQNFQKVKEKKFG
                     STSLSFYAS"
     gene            complement(6547..6930)
                     /locus_tag="ACHFOB_001079"
     CDS             complement(6547..6930)
                     /locus_tag="ACHFOB_001079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799888.1"
                     /translation="MKISLECKDLIIEKTLELFLKDHLVMKKNCDFIISDEKIYTAKP
                     LFIISKNSPFLSIPFSKEALFESLNEFDNALKAAALQLALEQKRLLEEKIDAIALEFK
                     KDYENKIDLAIKDLKNKLVKALNDE"
     gene            complement(6927..8000)
                     /locus_tag="ACHFOB_001080"
     CDS             complement(6927..8000)
                     /locus_tag="ACHFOB_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5644 domain-containing protein"
                     /protein_id="HFN5799889.1"
                     /translation="MKKLELRIFRFDKTKDYEAYYKPYIYDNYENFASFYDLLLQVQD
                     DDIYFDFDKDEDTYMVVNKQIIPLFTPLEKIAKEFDFSLCIEPLSTKRAIKDLIIDKN
                     DFLDKYKYLEKFGDEEDKKLYAKYDYLYYASEILDYLPEYMGDGVFYLASKMIEKYPE
                     KKIEILKTLADKEKGIFYHLESKNEILETTIKNLQNEILNLGLFDKNILHFDLPKTNA
                     FDNEIKELKEIKHNFKDFNIAFYGFNACDTLKSKLKAKFISYENSIKNNGFSLLNLNP
                     TLSYKIAADIVLDAYDSGADFMVVKEEKDFYLFDTCAKKLMQTSGREFEDFYILSRFE
                     FLALIEGIQAPSLKNHTLKVSLI"
     gene            8087..8908
                     /locus_tag="ACHFOB_001081"
     CDS             8087..8908
                     /locus_tag="ACHFOB_001081"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HFN5799890.1"
                     /translation="MNKEDFIIKAFLNEKNGDDGAVIDDWCFSKDLFFENVHFKRAWL
                     SLEQIATKAMLVNISDAIVMNAVPKYALLGLALPKNLSENEIKALQKGFLKTARKFNI
                     KIIGGDTISNDKIDISLTIISKINDKAVFRKGLKKGHLLAYTGKLGRSLKGLEILQNG
                     GNLKPNHVFIKPKLRASFFYEVAPLISCAMDISDGLSKDLSRLLALNKCGISWFKKLD
                     DYTLYSGEEYEILFAFDEKERQNIKTIAKKHGVKLNIFGKAVKGKYEFRGREHHF"
     gene            8877..9995
                     /gene="truD"
                     /locus_tag="ACHFOB_001082"
     CDS             8877..9995
                     /gene="truD"
                     /locus_tag="ACHFOB_001082"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HFN5799891.1"
                     /translation="MNLEEENTIFKPLYSLKHSPINAYFSKNSDDFVVRERPLYEFSG
                     KGEHLILHINKKDLTTNEALKILSETSGVKIRDFGYAGLKDKQGSTFQYLSMPKKFES
                     FLSNFSHPKLKILEIFTHENKLRIGHLKGNTFFIRLKKVLPSDALKLEQALMNLDKQG
                     FTNYFGYQRFGKFGDNYKEGLEILHGKKMKNVKMKEFLISAFQSELFNRYLSKRVELS
                     HFANDFSEKELIQIYKISKEEAKELKKQEQFFKLLKGEVLGHYPFGKCFLCEDLSAEL
                     GRFKARDISAMGLLIGAKAYETGEGLALNLENEIFKDTLEFKAKMQGSRRFMWGYLEE
                     LKWRYDEEKAHFCIEFFLQKGSYATVVLEEILHKNLFE"
BASE COUNT         3186 a         1496 c         1574 g         3753 t
ORIGIN      
        1 tttttcagta taaaaaactt tttagtttta tagattctgg tcttgagtta agtcaggctt
       61 ttaaaaagat tgatattttt gattctttgg tattttctat gctcagtgtt gcgatgaaaa
      121 gtggaagact tgaagtgtta agtgaagaaa ttgccaaata ttatcaacaa aaaagtgaaa
      181 atttaatgga tagatttttg gtttttttag agcctatgat gactttattt gtggcgtttt
      241 tagttttgtt tttggcttta ggtatatttt tacctatgtg ggagcttagt tcgggggtca
      301 atttttaact aaaataatcc caagctactt taatgatagt agctcctaca acgattaaaa
      361 ataaagtttt tataaacttt ccattagttt ttaatacaag ttttgagcct aaataagctc
      421 ctaaaacttg tcctacgccc ataagcaagc ctacagccca taaaagttcg tattgccata
      481 aaaatatagc aagagcaatg atattactag tgaaatttaa aattttagta ttaatgcttg
      541 cttttctcat attaaaacct agtagcatca cacaagcaaa aatccaaaat gaacccgttc
      601 caggccctaa aaatccatca taaaatccta aagttaagcc acaaattaaa tgaaaaattt
      661 tgatattttt tattttaggt tcgctttcgt gtttgcctaa gttaggacgt aaggctgtat
      721 ataagaaagt aagagttaaa aagattaaga taataagctt taattgctca tcttttacaa
      781 aaagaacgct atagcttcct atagctgctc ctaaggctgt aaaaaaaaca ccccaagcaa
      841 gatgaggtag agtggtggat ttaaaataag ttaaagtagc cgtaaaagaa ccaaagacgc
      901 tttggagttt gtttgttgct aaagataaat gcgcaggaat cccacaggct atgagtgctg
      961 gtagagtaat aagccctcct ccacctacaa tagaatctat aaaaccagca aaaagagcta
     1021 caaaaaaaag tatgaaataa taaattgtat ctaagtgctc aaagcccatt tttcactcct
     1081 taaatttgtc tttccttact ttgccctaaa cgatagagtg caaagtcata ttttatggga
     1141 tcatttgcat ctaatttttt taaattttgc gtgagttcta aaacactttt ataatcatat
     1201 attttacgct ttagaagtcc taaagtcaag gaaattttat gtgcatgtgt atcaagtgga
     1261 attaaaagat ctttggtgtg aattttggta aaaagtccaa gatcaagttc atcttttcta
     1321 accatccatc ttagatacat attatagcgt ttaagaggtg aagtaggagt gttttgccaa
     1381 atttttccaa agaaaaaatc atatccataa cttgaatatg aatttaaggt tttgattttt
     1441 tgcataaaag ctaagatggc atctgtggta ttttctcttt cttgataggc ttgataaaaa
     1501 agttcgtaga gtgaaatttc atttttcagc cttgaaagag tgataaaaat ttcttgtata
     1561 tctttttcat tttggaagcg gtattttaaa tttttaagtt ctttttttat ttgtttttct
     1621 tgaaggttta ataaagaaaa atcaagtttc tttagaaaat ttactatatt tttagcattt
     1681 ccataggcaa ataaagcaca aattaaggca ataaattcat cattgtgaat tttagcaatt
     1741 tgcaaaggat ctggagtttc aaaaagggaa tgattggtat ttttttgatt ggctaaaaaa
     1801 tcgagcttag ctttaagatg gataaaattt ttcatttgat attactagag cttaagattt
     1861 aagccctagt aaggtatcaa gcatttgatc tacggttgag acgatttttg ctgctgcacc
     1921 gtaacttgat tgatattgta taagggcggc taattcttca tttgtattta cgccactttt
     1981 agattggtac tcgctataaa cagaattata aagagtttca ttgcttgaat tgacgacatt
     2041 gttattttca ccatctgagg ctattttacc tgtaagtttg cggtaatatt cttccatggt
     2101 aagattatcg atagtgccat cttcattata aaaattaact ttttcatatt gaagttggat
     2161 gattttattt gccatgtcat tgccactatc aaccccactt aaacttgctc ttactgtgct
     2221 tggatcattt aagatggaat cttttacttt catattactt gcatcagttc cgctgaaaaa
     2281 accacctata ctaaacgcac ctgcgaaatt tgtgccctta tcttcaatgg ctaccttaaa
     2341 acctgatttt gcattgattt gaaataaacc atctccagtt tttgcatcgt agctaaaact
     2401 tgcattgata tgatcatcaa catcatcgtt tgaattttta ttgttattat catctgtatt
     2461 agcattgatt tgacgcatga tatcattcat ggttgtattt acatctatgg tgatggtttt
     2521 ggtgagtttt ttatcgcctt tatcatcata aatgactata tcaaaacttc ctggttgtat
     2581 ggttctgtcg taattaacta aaggaatatc tcccttaagc ccagatagat aatcagaagt
     2641 aacagaactt ttcgcagaac ttgcataaag attgttagtt tcattgatca tggtcttagc
     2701 aaaagtatct aaagaatcca tataaccttg gataattcca tcttcatatt ttccttcgct
     2761 tttgctatag tttctaccgc gtaagtcaag ttgagcacca agctgtccac cgctaatttt
     2821 tgcagtaaga tcgcgaactt tttcatcagg agtttcataa taaatgctat aagatttatt
     2881 tttatcatca taatcaagct ttaaaggatg aaaatttatt ccatctacta tactaaaacc
     2941 ttctatactt agattgtatt gatgtcctgg atcagtgatg gttgtatcaa ggcgattgtc
     3001 ttgattgatt tcatttttgc ttgcaactgc actaactagc tttgaaagag taagctcaag
     3061 ttcatctctt ctatccctaa gttcatttgc gtgttctgtt ggtaaggctt cttgtccata
     3121 aatttgttta tttatagtag caatttcttc gccaattcta ttaatctcat caactgtatt
     3181 tttaatatca tcatttactt ttttttggat tttatccaag gttgcaaaag tgttattaac
     3241 gctttctgtt aaggtctgag aagcttttac aagggctatt tttgtggcat tttcattagg
     3301 gttagatgca aaatcattcc aagctttgtt ataattttct aaatctttca aaattccagt
     3361 attttgtaag tctggaaaac gctgagcgat ttcttgtaag gttgaagcca tatatttagt
     3421 gtattctagt tggtttgatg caccttttaa tttatagtaa gaatactcat catgcaaacg
     3481 cactatactt tctatagcag ttcctgtgcc tacttgaact ccacctgtgg taatataccc
     3541 atttgtagtt tgcactactc tttggcgtgt ataaaaagtt gcattagcat ttgagatatt
     3601 gtttccagtt gttgcgattt gaacttcgct tgcctttaag cctgtaacac ctgtgtataa
     3661 tgttccaaaa atacccatta taaatcctta tacattgatc ttgaaaattg actctggatt
     3721 tgtcttttta tctccataag cattatttgt tccatcattg atatcaaaca ttttatttac
     3781 taagccatca agaaaatctt tgacaataag aacaaattta gcatactctt tgtttttact
     3841 atgaaggttt tgaagatttt ttttaagtag atctagtttt tgtttatctt catcatctaa
     3901 gagttcacta agcccttttg tagagctatt atttagctca accaaggcaa catcaagttg
     3961 ttttttagct gtaataaatt cggcaataag tttgtttttt tcttctacac ttggcgttac
     4021 actctcatgt ttagccactt tgatattttc tatatcttct tcggttaaag caataagttt
     4081 tgctaagata gcatttactt catcaagtct ttgtttaagc atattttctc cttttctctc
     4141 tcaaaaaaaa ggagaatgaa agttttagat taaagagtca gcaatcgcag cagccgtagc
     4201 ttttgtatcg attttataag taccgttttt aatctgctct gcgattttac tcgctttatc
     4261 attttccgtt ttttgagtat cgtttgtttt agtttcttta tctattctat ttgtatttaa
     4321 tgtggtattt gccacataac tttgttgtac aggattgatc atttctgcct ccttgatctt
     4381 agttataatc ctctacaaac catatcgacc caaatttaaa aaacttaacc cctttctttt
     4441 aaaaaatcgt ataataattt tgaaaaaccc atacctccac ttaaagcttt actcatagta
     4501 tcgttataca tggaagagta tatttcatca ctggcatctt ttccaaagag tgaattttga
     4561 ctttttaaag atacatctaa aacttgcttt aaaaaaaatg cttcaaaagc atctgtttgt
     4621 tcttttaagg cttcatcttc tttggttttt gtaactatat cattatcatt tattttaata
     4681 cttgattcta agcttcttgc tttggctgca cgatcaagta aagcgctatt catactataa
     4741 gtatttaaaa aattatccac tttcattaga tgatctccaa atccgcgtta attgcacctg
     4801 cgcgctttaa attttccata atagcgataa tgtcatttgg ggttgctcca agtttgttaa
     4861 gcattctagc tatattcgca actgtgcttt ttgcattgtt gattcttaag gtatttgaac
     4921 ttggatctac aaaaccacca tctttcatat cgatttcatt ttgattagct actgcgttat
     4981 tgtttggatc tatttttatg gtgatatctt tatgagtgat taaaacaggt tctacctcta
     5041 catcaactcc agcaatcact gttcctgttc tttcatcgat gataactttg ctttgtggtt
     5101 tataagctat atcttgttct aaaactcttg ccataaaatc aacatttgaa agatcttcag
     5161 gttttttgag ttttactgtg cgagagtcga tagctttagc tacttcttcg ccaaagacag
     5221 tatttaaaac tctttctata tcatttgcgg ttttaaagtc cgctactttt aaacttaagg
     5281 ttagatcact gttttgacta aaattttgtg gaatttctct ttctacatta gctccgccca
     5341 ttacggttgc agcagttgag tgagaacctg ctcctcctgg tctaggtgtt aaacctcctg
     5401 ttgagataga gccttgtgct atagcataaa tttcaccatc aatcccacga agtgcagtca
     5461 gtaaaagtgt tccgccttgt aaagattttg catcacccat agatgaaacg gtaatatcaa
     5521 gtttatctcc gctttttgca aaggccggaa gtttggctgt aaccataaca gctgcggtat
     5581 tttttgattt gatatcgtta ggatctactt tgatattcat accttgcaaa aggtttgaga
     5641 tggattgtag tgtaaattta gagcttgttc catcgccgct tccattaagc cctacaacaa
     5701 gtccataacc tataagttgg ttatctctta cacctacagt gtttgctaca tccttgattt
     5761 gcactgcaaa aatgcttgtc ataaagagta aaaatatcgt taaaactctc atggattctt
     5821 cctttaatct attgttgatg atagatcaag caagaagtgt tccaagtaag ttaagaagcg
     5881 taaaagctta agctagttga tccaaatttc ttttctttga ctttttgaaa attttggatt
     5941 ttttcgggag tttttatggt tgagtggtgt tcaaaaatga ttaaatttaa agtctttaaa
     6001 tctaaatttt ctaaaaaatg ataaattttt tcataaatat cgctaaaacc ttctctggta
     6061 tcaaaaggtg ggtcaagata taagatgatt tcattttttg aattttctat gagtttaggt
     6121 aaaatttcaa aagtatttgc atggatcact tctaaatttg gatctatatt tttagcattt
     6181 tctaaagcaa ttttataagc ttttacatca agttctatag cataagcttt taaagcatga
     6241 ttacttagtg cttcagctgc tattaaagca cttcctccaa aggcttcaat gaaaatttta
     6301 cttcttaaat cttctcttat tacattaaaa acacaacttt tgactatgct tttagtactt
     6361 cttgttgttg taagactagg taaaagtagt tttttccctt tgtatttacc actttctata
     6421 tttgtataaa gctttgtttc tttagttttt tttgtttttt ctttaagagg tttaatttct
     6481 tgtttttgaa gaaatttttt tcttttttca ttgtgattaa aaaagtcttt aacgcttata
     6541 aattcatcat tcatcattaa gtgcttttac gagtttgttt ttaagatctt ttatggcaag
     6601 atcgatttta ttttcataat cttttttaaa ttccaaagca atagcgtcaa ttttttcttc
     6661 aagcagtctt ttttgttcaa gtgcaagttg caaagctgct gcttttaagg cattatcaaa
     6721 ttcatttaaa gactcaaaca aggcttcttt gctaaatggt atgcttaaaa atggagagtt
     6781 tttagagatg ataaataagg gttttgcggt ataaattttt tcatcgctaa tgatgaaatc
     6841 acaatttttt ttcattacca aatgatcttt taaaaaaagt tctaaagttt tttctatgat
     6901 gagatctttg cattctaaag agattttcat atcaaactaa cctttaaagt gtgatttttt
     6961 aatgatggag cttgtatgcc ttcgataagg gctaaaaact caaaacggct caaaatataa
     7021 aagtcttcaa attcccttcc acttgtttgc ataagttttt tagcacaagt atcaaaaaga
     7081 taaaaatctt tttcttcttt tactaccata aaatcagccc cgctatcata agcgtccaaa
     7141 acaatatctg cggctatttt atagcttagc gtaggattta gattaagcaa gctaaagcca
     7201 ttatttttta tactgttttc ataggaaata aatttagcct taagtttgga ttttaaagta
     7261 tcgcaagcat taaaaccata aaaagctata ttgaaatctt taaaattatg tttaatttct
     7321 ttaagttctt tgatctcatt atcaaaagca ttggttttag gtaaatcaaa gtgtaaaata
     7381 tttttatcaa aaagccctaa atttaaaatt tcattttgta ggtttttgat cgttgtttct
     7441 aaaatttcat ttttgctttc aagatgataa aaaataccct tttctttatc tgctagagtt
     7501 tttaaaattt ctatcttttt ttcaggatat ttttctatca tttttgaagc caaataaaac
     7561 actccatcgc ccatatattc aggaagatag tctaaaattt cacttgcata atataaataa
     7621 tcatattttg cataaagttt tttatcctct tcatcaccaa atttttcaag atatttgtat
     7681 ttgtctaaaa aatcattttt atcgatgata agatctttaa tggctctttt tgtgcttaaa
     7741 ggctcgatac aaagactaaa atcaaattct tttgctattt tttctaaagg tgtaaaaagt
     7801 ggtatgattt gcttatttac aaccatgtaa gtatcttcat ctttatcaaa atcaaaataa
     7861 atatcatcat cttgaacttg caaaagcaaa tcataaaaac ttgcaaaatt ttcataatta
     7921 tcataaatat aaggtttata ataagcctca taatccttgg ttttatcaaa tctaaaaatt
     7981 cttaattcta attttttcat ggtttttcct taaatatttc tatattatat aaaatttttc
     8041 taaaattcac tagaatttaa aaggaaattt tataaaatca cgcattatga acaaagaaga
     8101 ttttattatc aaagcttttt taaatgaaaa aaatggcgat gatggagctg ttattgatga
     8161 ttggtgtttt agtaaggatt tgttttttga aaatgtgcat tttaaaagag cgtggcttag
     8221 tttagagcaa atcgctacaa aagcaatgct tgtcaatatc tcagatgcca ttgtgatgaa
     8281 tgctgtgcca aaatacgcac ttttaggact tgctttacca aaaaatttaa gcgaaaatga
     8341 gatcaaagcc ttacaaaaag gttttttaaa aacagctagg aaatttaata taaaaatcat
     8401 aggcggcgat actataagca atgataaaat agacattagt cttactatca tttcaaagat
     8461 taacgataaa gccgttttta gaaaaggttt aaaaaaagga catttacttg cttatacagg
     8521 aaaattaggg cgaagtttaa aagggcttga aattttacaa aatgggggca atttaaaacc
     8581 aaaccatgta tttataaagc caaaattaag agctagtttt ttttatgaag tcgcaccttt
     8641 aatttcttgt gctatggata tttcagatgg tttaagcaag gatttatcaa gacttttagc
     8701 cttaaataaa tgcggtattt cttggtttaa aaaacttgat gattatacgc tttatagcgg
     8761 agaagaatat gaaattttgt ttgcttttga tgaaaaagag cgtcaaaata taaaaacaat
     8821 agccaaaaaa cacggcgtga aattaaatat ctttggaaaa gcagtgaaag gaaaatatga
     8881 atttagagga agagaacacc atttttaagc ctttgtatag tttaaaacac agtcctatta
     8941 atgcgtattt tagtaaaaat agcgatgatt ttgtagtgcg tgaaaggcct ttgtatgaat
     9001 ttagcggtaa gggtgaacat cttattttgc atatcaataa aaaagattta accacaaatg
     9061 aagctttaaa aattttaagc gaaacaagcg gggttaaaat aagagatttt ggttatgcag
     9121 ggcttaaaga taagcaagga tcaacctttc aatacctttc tatgcctaaa aaatttgaga
     9181 gttttttgtc aaatttttct catcctaaac ttaaaatttt agaaattttt acccatgaaa
     9241 acaagctaag aatagggcat ttaaaaggaa atactttttt catacgctta aaaaaagttt
     9301 taccaagcga tgctttaaaa ctagaacaag ctttgatgaa tttggataag caaggtttta
     9361 cgaattattt tggttatcag cgttttggaa aatttgggga taattataaa gaagggcttg
     9421 aaattttgca tggcaaaaaa atgaaaaatg taaaaatgaa agagttttta atttcagctt
     9481 ttcaaagtga gctttttaat cgctatttga gtaaaagagt ggagttatca cattttgcaa
     9541 atgattttag cgaaaaagaa ttgatccaaa tttataaaat ttctaaagaa gaagctaagg
     9601 aacttaaaaa acaagaacaa ttttttaagc ttttaaaagg tgaggtttta gggcattatc
     9661 cttttggaaa gtgtttttta tgcgaggatt taagtgctga gcttgggcgt tttaaggcaa
     9721 gagatataag cgccatgggg cttttaatcg gtgctaaggc ttatgaaaca ggagaaggtt
     9781 tggccttaaa tttagaaaat gaaattttta aagatacttt ggagtttaag gctaaaatgc
     9841 aaggttcaag acgctttatg tggggatatt tagaagagtt aaaatggcgt tatgatgaag
     9901 aaaaagctca tttttgtata gagtttttct tgcaaaaagg ctcttatgct actgtggttt
     9961 tagaagaaat tttgcataaa aatttgtttg aatgaaataa ttatgagtt
//
LOCUS       DAZBIH010000051         9894 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.052, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000051 DAZBIH010000000
VERSION     DAZBIH010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9894)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9894)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9894
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.052"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..97)
                     /gene="tatA2"
                     /locus_tag="ACHFOB_001083"
     CDS             complement(<1..97)
                     /gene="tatA2"
                     /locus_tag="ACHFOB_001083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sec-independent protein translocase subunit
                     TatA2"
                     /protein_id="HFN5799892.1"
                     /translation="MVFLIPLLIIIGVIFGIDYVYFKNQDLKVQVK"
     gene            complement(107..445)
                     /gene="napD"
                     /locus_tag="ACHFOB_001084"
     CDS             complement(107..445)
                     /gene="napD"
                     /locus_tag="ACHFOB_001084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperone NapD"
                     /protein_id="HFN5799893.1"
                     /translation="MNNLSSVLILAKEEYINDLKKAISEIPFCSVELCENEKIIVVIE
                     SENLEDELNSYKMLEKLPNIISINMVFSYQDLNDDIQKAINSGAIETIEKNENAENVR
                     YYGSVFNQFS"
     gene            complement(438..1352)
                     /gene="napL"
                     /locus_tag="ACHFOB_001085"
     CDS             complement(438..1352)
                     /gene="napL"
                     /locus_tag="ACHFOB_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WD40 repeat domain-containing protein"
                     /protein_id="HFN5799894.1"
                     /translation="MKKFLFILSLFCVLSYAYELKLNANITALKLDKQNLYIGTDKGE
                     ILQYNIKDKSLKELLSLPKIKNYYGDDFAKIYNIDIFKHTLLILSEGDFGAKNLSFYK
                     ENLQIKKLEENSIIKAFFINENTYLLISIGSEIELIDKSLKNIKKFNFSHSSLNDAVL
                     NEDKGRLVAGFESGEVELFDLKNWKMLKNYDKMHKDNIYQVDFKNNIILSCGTDRRIG
                     VVKNEEQNFLQKDFLIYTCALSPNGEFAVYSDNEAGVSEVFSTSDFKPVKTFNNENLM
                     SEFIIFLNNKDFIVSGFGDSIMFRSIDE"
     gene            complement(1357..1881)
                     /gene="napB"
                     /locus_tag="ACHFOB_001086"
     CDS             complement(1357..1881)
                     /gene="napB"
                     /locus_tag="ACHFOB_001086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrate reductase cytochrome c-type subunit"
                     /protein_id="HFN5799895.1"
                     /translation="MMKKKLVLLGSAAVVFFAACAMNSGVSSEQIGLRKASLENENKV
                     NLVEANFTTLQPGESTRFERSYENAPPLIPHAIEDLLPITKDNNMCLSCHDKAIAADA
                     GATPLPASHYYDFRHNKTTGDMISDSRFNCTQCHVPQSDAKPLVGNSFKPEFKNEQLK
                     SRSNLIDVINEGVK"
     gene            complement(1878..2660)
                     /gene="napH"
                     /locus_tag="ACHFOB_001087"
     CDS             complement(1878..2660)
                     /gene="napH"
                     /locus_tag="ACHFOB_001087"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinol dehydrogenase ferredoxin subunit NapH"
                     /protein_id="HFN5799896.1"
                     /translation="MMKYLIARRIVQLGILALFSFKATDFILQGNLSSSRLFNTIPLS
                     DPFAVLQIILASWSIDLMALIGALIIFFIYGLLLGRVFCSWVCPVNLITDFAAFVRNK
                     LTLNNKFLILPKNLRYFVLVLVLVLSFVFSLPVFESFSYIGMIHRGIIFATSSWIFVA
                     FILFCIDTFLSPRAICSHFCPLGAFYAFISRFALLKIKHDSDKCTKCYECIRICPEKQ
                     VLWMVGKESTSVKSGECIRCARCIEVCNDDALNFNIFDLRNK"
     gene            complement(2657..3397)
                     /gene="napG"
                     /locus_tag="ACHFOB_001088"
     CDS             complement(2657..3397)
                     /gene="napG"
                     /locus_tag="ACHFOB_001088"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin-type protein NapG"
                     /protein_id="HFN5799897.1"
                     /translation="MKGRREFFVSAFKAACLCTGGGFLANLALKADDNYALRPPGAED
                     EARFLSKCIRCGLCVKACPYDTLKLASLLDSPKNGTPFFKAREIPCYLCKDIPCIREC
                     PTDALDKKHLEQGIESLKMGIAIVDSASCVAHWGIQCDACYRACPLIDRALKLELKRN
                     ERTAKHAFLLPSVDHEVCVGCGLCELACITEKPAIRVLPREYVLGKAGSHYVKGWDEK
                     DEGRIKNADTSKHFDAKKATNYLNDGEL"
     gene            complement(3415..6186)
                     /gene="napA"
                     /locus_tag="ACHFOB_001089"
     CDS             complement(3415..6186)
                     /gene="napA"
                     /locus_tag="ACHFOB_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009325 - nitrate reductase complex
                     [Evidence IEA];
                     GO_function: GO:0008940 - nitrate reductase activity
                     [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_process: GO:0042126 - nitrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="periplasmic nitrate reductase subunit alpha"
                     /protein_id="HFN5799898.1"
                     /translation="MNRRDFIKNTAIASAASVAGLSVPSSMLGAQEDWKWDKAVCRFC
                     GTGCGIMIARKDGKIVATKGDPAAPVNRGLNCIKGYFNAKIMYGEDRLVMPLLRMNEK
                     GEFDKKGKFQQVSWQRAFDEMEKQFKKAYNELGVTGIGIFGSGQYTIQEGYAALKLAK
                     AGFRTNNIDPNARHCMASAVVGFMQTFGVDEPSGCYDDIELTDTIITWGANMAEMHPI
                     LWSRVSDRKLSNLDKVKVVNLSTFSNRTSNIADIEIIFKPNTDLAIWNYIAREIVYNH
                     PEAMDMKFIKDHCVFATGYADIGYGMRNNPNHPKFKESEKDTVEKENVITLDDEEAAS
                     LSYLGVKAGDKFEMKHQGVADKNWEISFEEFKKGLAPYTLEYTAKVAKGDDNESLEDF
                     KKKLQELANLYIEKNRKVVSFWTMGFNQHTRGSWVNEQAYMVHFLLGKQAKPGSGAFS
                     LTGQPSACGTAREVGTFSHRLPADMVVANPKHREISEKIWKVPAKTINPKPGSPYLNI
                     MRDLEDGKIKFAWVQVNNPWQNTANANHWIAAAREMDNFIVVSDCYPGISAKVADLIL
                     PSAMIYEKWGAYGNAERRTQHWKQQVLPVGAAMSDTWQILEFAKRFKLKEVWKEQKVD
                     NKLTLPSVLEEAKAMGYSEDDTLFDVLFANKEAKSFNPNDAIAKGFDNTDVKGDERKI
                     QGSDGKEFTGYGFFVQKYLWEEYRKFGLGHGHDLADFDTYHKVRGLRWPVVNGKETQW
                     RFNTKFDYYAKKAAPNSDFAFYGDFNKMLTNGDLIAPKDEKEHSIKNKAKIFFRPFMK
                     APERPSKEYPFWLATGRVLEHWHSGTMTMRVPELYRAVPEALCYMSEKDGEKLGLNQG
                     DLVWVESRRGKVKARVDMRGRNKPPVGLVYVPWFDENVYINKVTLDATCPLSKQTDFK
                     KCAVKIYKA"
     gene            complement(6433..6960)
                     /gene="tpx"
                     /locus_tag="ACHFOB_001090"
     CDS             complement(6433..6960)
                     /gene="tpx"
                     /locus_tag="ACHFOB_001090"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008379 - thioredoxin peroxidase activity
                     [Evidence IEA];
                     GO_function: GO:0016684 - oxidoreductase activity, acting
                     on peroxide as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HFN5799899.1"
                     /translation="MSTVNFKGNPVKLKGNSVEVGADAPKVNLKAKDLSVIEIGAAGK
                     TQIILSVPSLDTPVCATEAREFNKKVASYNGAEVIVVSMDLPFAMGRFCSTEGIENLS
                     VASDFVAKEFGEKYGVLINEGALEGLLARAVFVIKEGKVAYKELVNEITEMPDIAKLD
                     AFFGGSSCCGGCGCH"
     gene            complement(7059..7799)
                     /gene="peb2"
                     /locus_tag="ACHFOB_001091"
     CDS             complement(7059..7799)
                     /gene="peb2"
                     /locus_tag="ACHFOB_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family adhesin PEB2"
                     /protein_id="HFN5799900.1"
                     /translation="MKKILILSLAAASFLNAEILVYGPGGPAPVLKELALKFEEKTKE
                     KVIVTAGPTPAWIDKAKENADLIFSGNTSMMDDFAKKIPSLSLENLSVLNVRPSGIIV
                     RPNNPKNIKNFEDILKDGINVMVVDGAGQVGLYEDMALKSAKRENLVKLRKNIKIYAK
                     NSKAAVDEWNNNPNIDALIIWSHWAKALGDDKALFIKDKNAVIYRAAEIAPTKKGLEN
                     KKALEFVDFIKSKEAQKVWKKYTWKEVK"
     gene            complement(7840..9870)
                     /locus_tag="ACHFOB_001092"
     CDS             complement(7840..9870)
                     /locus_tag="ACHFOB_001092"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent helicase"
                     /protein_id="HFN5799901.1"
                     /translation="MPLSKLNNEQYLAATADFGHNLVIASAGTGKTSTIVARISYLLS
                     KGVAPQKIMLLTFTNKASKEMIGRLGKFFDKNITSKILAGTFHSTAYTLLRNADKNIA
                     LKQASELKTLLKSVYEKRTFRHLSDIKPYQSSYLYDLYSLFQNKAHNQDFYTWFCQNY
                     EDQSIYAEIYEDILKEYDNEKKRFNYVDFNDLLINLKDLLKEEKYEFDEILVDEYQDT
                     NTLQSSLIEAFHSKSLFCVGDYDQSIYAFNGADINIIGGFKDRFKDVKIFSLNKNYRS
                     SRSILALANKVILNNERLYPKELIVTRNDEFKAPSLLTFEELFDQYQNIAKMILTSGV
                     SLEEIAVIFRNNSSADGVEVALREQGIASVRKGSGSFFESLEVKAFSSMLALVVNPKD
                     IMAFIHLVQYTKGVGGVLAKEIFDALLKLGHGNLIKGFLDPDKNVNLQNHQKRNYQLG
                     LFADLEELASETRFKFESEFDAHPILKLSKINDLCARNLEKIYLFLKKAMEIKHSLTL
                     VNLICENSFYREICEELATKRATNKAGQVDLLRKSENLEKIETKFNVLKELAKNYSDI
                     YKYYNFLTLGASEMSSGKGVNLLSVHASKGLEFDLVFVIDLAQGRFPNQKLMGMGGSL
                     EEERRLFYVAVTRAKNILYLSYAKYDKNKKTSFAPSRFLIEAGLCKGELTID"
BASE COUNT         3303 a         1958 c         1181 g         3452 t
ORIGIN      
        1 ttttaacttg cacttttaaa tcttgatttt taaaatacac ataatcaatt ccaaaaataa
       61 caccaattat aataagcaat gggattaaaa ataccatctt tacactttaa gaaaattgat
      121 taaatacact accatagtag cgaacattct cagcattttc atttttttct atcgtttcta
      181 ttgcgccact attgattgct ttttggatat catcatttaa atcttgataa gaaaaaacca
      241 tattaatact gataatattt ggcaatttct caagcatttt ataagagttt aattcatctt
      301 ctaaattttc actttcaatc acaactataa tcttttcatt ttcacaaagt tctacagaac
      361 aaaaaggaat ttcagatata gcctttttta aatcatttat atattcttct tttgctaaaa
      421 tcaaaacact agaaagatta ttcatcaata ctcctaaaca ttatactatc accaaagcct
      481 gaaacgataa aatctttatt gtttaaaaaa ataataaact cactcatcaa attttcatta
      541 ttaaaagttt taacaggctt aaaatcactt gtgctaaaaa cttcactaac tccagcttca
      601 ttatcgctat aaacagcgaa ttctccatta ggacttaaag cacaagtata tatcaaaaaa
      661 tctttttgca aaaaattttg ctcttcattt tttacaactc ctatacgcct atccgttcca
      721 caacttaaaa taatattatt tttaaaatct acttgataga tattatcttt atgcatttta
      781 tcatagtttt ttaacatctt ccaatttttc aaatcaaaaa gttctacttc gccactctca
      841 aaacctgcaa ctagtctacc cttatcttca tttaaaactg catcattaag actagaatgg
      901 gaaaaattaa atttttttat attctttaag cttttatcaa tcaattctat ttcagaacca
      961 atagaaatca aaagataagt attttcattg ataaaaaatg cttttattat gctattttct
     1021 tcgagctttt tgatttgtaa attttcctta taaaaactta aatttttagc accaaaatca
     1081 ccctcgctaa gtattaaaag tgtatgttta aaaatatcaa tgttgtaaat tttagcaaaa
     1141 tcatcaccat aataattttt aatctttggc aaagataaaa gttcttttaa acttttatct
     1201 ttaatgttat attgcaaaat ttcaccttta tcagtgccta tatataagtt ttgcttatca
     1261 agctttaaag ctgttatatt ggcatttaat ttcagctcat aagcataaga caaaacacaa
     1321 aaaagactca aaataaaaag aaattttttc atttatttac tttacaccct cattaatcac
     1381 atcaattaaa tttgaacgac tttttaattg ttcattttta aattcaggtt taaagctatt
     1441 tcccaccaaa ggttttgcat cgctttgtgg aacatgacac tgagtacaat taaaacgact
     1501 atcgctaatc atatctcctg tggttttatt gtgtctaaaa tcataataat gactagcagg
     1561 aagtggagtt gcaccagcat ctgctgctat agccttatca tggcagctta agcacatatt
     1621 gttatcttta gttataggta acaaatcttc aatagcatgc ggaattaatg gtggtgcatt
     1681 ttcataagaa cgctcaaaac gagtagattc cccaggctgt aaagttgtga aatttgcctc
     1741 cactaaattt actttatttt cattttctaa acttgctttt ctaagtccaa tttgttctga
     1801 acttacccca ctattcattg cacaagcggc aaaaaatacc actgcagcac ttcctaataa
     1861 aaccaatttc ttcttcatca tttattcctt aaatcaaaaa tattaaaatt caaagcatca
     1921 tcattacaaa cttctataca tcttgcacac cttatacact ctcctgattt cacgctagta
     1981 ctttcttttc caaccatcca caaaacctgt ttttcaggac aaatacggat acattcataa
     2041 catttagtgc atttatcact atcatgcttt attttaagca aagcaaaacg agaaataaaa
     2101 gcataaaaag ctcctagtgg acaaaaatgt gaacaaattg ccctaggact taaaaaagta
     2161 tcgatacaaa aaagtataaa ggctacaaaa atccaagaac ttgtagcaaa aataatccct
     2221 ctatgtatca ttcctatata agaaaaactt tcaaacacag gcaatgaaaa tacaaaagaa
     2281 aggactaaaa ccaagaccaa tacaaaatag cgtaaatttt taggcaaaat taaaaattta
     2341 ttattaaggg ttaatttatt tcgcacaaaa gcagcaaaat ctgtgattaa attaacagga
     2401 caaacccaag agcaaaaaac ccttcctaaa agcaaaccat agataaaaaa tataatcaaa
     2461 gctcctatta aagccattaa atctatactc cagcttgcta gaatgatttg caaaactgca
     2521 aaaggatcac ttaaaggtat ggtattaaaa agtctagaag aacttaaatt tccctgcaag
     2581 ataaaatctg tagctttaaa actaaaaagc gctaaaattc caagctgaac gatgcgtcta
     2641 gcaattaaat acttcatcac agttctccat catttaaata attggttgct tttttagcat
     2701 caaaatgttt tgaagtatct gcatttttta tacgaccttc atctttttca tcccagcctt
     2761 ttacataatg agatcctgct tttcccaata catactccct tggcaaaaca cgaatggccg
     2821 gtttttcagt aatacaagca agttcacaaa gcccgcaacc tacacacact tcatgatcca
     2881 cactaggtag taaaaaagcg tgcttggcgg tgcgttcatt gcgtttaagc tcaagtttta
     2941 aagccctatc tatcaaagga caagctctat aacaagcatc gcattgaatt ccccagtgtg
     3001 ccacacaaga agcactatca acaatagcaa tacccatttt caaagattct ataccctgct
     3061 ctaaatgctt tttatctaaa gcatcagttg gacattctct aatgcaagga atatccttac
     3121 aaagatagca aggaatttct cttgccttaa aaaaaggcgt accatttttt ggactatcta
     3181 acaagctagc aagctttaaa gtatcataag gacaggcttt tacacaaagc ccacaacgaa
     3241 tacatttgct taaaaatcta gcttcatctt cagccccagg aggacgcaaa gcataattat
     3301 catcggcttt taaagccaaa ttagccaaaa atccacctcc tgtacataaa catgcagcct
     3361 taaaggcact aacgaaaaat tctcttctac ctttcattta atcaaaaccc taaattaagc
     3421 cttataaatt tttacagcac attttttaaa gtcagtttgt tttgaaagcg gacaagtcgc
     3481 atccaaagta actttattga tatatacatt ctcatcaaac cacggcacat acacaagtcc
     3541 tacaggcggt ttgtttcttc cacgcatatc tactcttgct tttactttac cacgacgaga
     3601 ttccacccaa accaaatcac cttgatttaa gcctaatttc tctccatctt tctcactcat
     3661 atagcaaagt gcttcaggca cagcacggta aagctcaggc acacgcatag tcatagttcc
     3721 actatgccaa tgctctaaaa cccttcctgt tgcaagccag aacggatact ctttacttgg
     3781 tctttcaggt gctttcataa atggcctaaa gaaaatttta gccttatttt taatactgtg
     3841 ctctttttca tctttaggag ctattaaatc cccatttgta agcattttgt taaaatcacc
     3901 ataaaaagca aaatctgaat ttggagccgc ttttttggca taataatcaa atttagtatt
     3961 aaatctccac tgtgtttcct tgccattaac cacaggccat cttaaacccc ttactttatg
     4021 ataggtatca aaatccgcta aatcatgtcc gtgtcctaag ccaaatttac gatattcttc
     4081 ccaaaggtat ttttgaacga aaaagccata gcctgtaaat tcttttccgt cactgccttg
     4141 aatttttctc tcatcgccct taacatcagt attatcaaag ccttttgcga tagcatcgtt
     4201 tggattaaag ctttttgctt ctttattggc aaatagtaca tcaaaaagtg tatcatcttc
     4261 gctataaccc atagcttttg cctcttctaa aacacttggc aaggtaagct tattatccac
     4321 tttttgctct ttccaaactt ctttaagctt aaagcgtttt gcaaattcta aaatttgcca
     4381 agtatcactc atggcagcac ccacaggtaa aacttgctgt ttccaatgtt gagttcttct
     4441 ttcagcatta ccataagcac cccatttttc ataaatcata gcacttggta aaataagatc
     4501 agctactttt gctgaaattc caggataaca atcacttaca acaataaaat tatccatttc
     4561 tcttgctgct gcgatccagt gatttgcatt tgcagtgttt tgccatggat tattcacttg
     4621 cacccatgca aatttaattt ttccatcttc taaatctctc atgatattaa gataaggaga
     4681 acctggtttt gggttgatgg tctttgcagg aactttccaa attttttcag aaatttctct
     4741 gtgttttgga ttggctacaa ccatatctgc aggcaaacga tgcgagaaag ttcctacttc
     4801 cctagctgtt ccacaggcac ttggctgtcc tgttaaagaa aaggctccgc tacctggttt
     4861 agcttgcttt cctagtaaaa aatgcaccat ataagcttgt tcatttaccc aagaacctct
     4921 tgtgtgttga ttaaagccca tagtccaaaa acttacaact ttgcgatttt tctctatgta
     4981 aagattagct aattcttgaa gttttttctt aaaatcttcc aaagactcat tatcatcacc
     5041 tttggctact tttgcagtgt attccaaagt ataaggggct aaaccttttt taaattcttc
     5101 aaaagaaatt tcccagtttt tatcagccac accttgatgt ttcatttcaa atttatcacc
     5161 cgctttaacg ccaagataag ataaagaagc agcctcttca tcgtctaaag tgattacatt
     5221 ttctttttca accgtatctt tttcactttc tttaaatttt ggatgatttg gattatttct
     5281 cataccataa ccaatatcag cataaccagt tgcaaatacg cagtgatctt tgataaattt
     5341 catatccata gcctctggat gattataaac aatctctctt gctatgtagt tccaaatagc
     5401 caaatctgta tttggtttaa aaataatttc aatatcagca atatttgaag tacggttaga
     5461 aaaagtgctt agattaacaa ctttgacctt atcaagattg cttagttttc tatcacttac
     5521 tcttgaccaa aggattgggt gcatttcagc catattagct ccccaagtga taatagtatc
     5581 tgtaagctct atatcatcat aacagcctga tggctcatct acaccaaaag tttgcataaa
     5641 accaaccact gcagaggcca tacaatgtct tgcatttgga tcgatattat ttgttctaaa
     5701 acccgctttt gcaagtttta aagcagcata accttcttgg atagtgtatt gcccactacc
     5761 aaaaatccct atacctgtaa cgccgagttc attgtaggct tttttaaatt gtttttccat
     5821 ttcatcaaag gctctttgcc aagaaacttg ttgaaatttg ccttttttat caaattcgcc
     5881 tttttcattc atgcgaagta aaggcataac aagacgatct tcgccataca tgatcttagc
     5941 attaaaataa cctttgatac aattaagtcc gcgatttacg ggtgctgcgg gatcaccttt
     6001 tgttgctacg attttgccat cttttctagc tatcataatt ccacagccag ttccacaaaa
     6061 tctacaaaca gctttatccc atttccaatc ttcttgcgcg ccaagcatag agcttggaac
     6121 actaagccct gcaacactag cagcacttgc aatagcggta tttttaataa aatcccttct
     6181 attcatcctt attcctccaa aataaaaaaa tcatcttatt ataaaaaatg aagtataaaa
     6241 atctcttgaa attttaataa aaataataat tttaaagctc tattttatag gagttttatt
     6301 gtccttttta tattattctt acacaaaata aatattaaaa ataatcaact taacaattaa
     6361 aatataatca acttaaaata ataaaaaaat gaagatataa aaattaagcc ctaagaatgg
     6421 gcttaatcaa aattaatggc aaccacaacc accgcagcag ctagaaccac caaaaaatgc
     6481 atcaagtttt gcaatatctg gcatttctgt gatttcattt acaagttctt tatatgccac
     6541 tttaccctct ttaatcacaa atacggcacg agctaaaagc ccttctaaag caccttcatt
     6601 tatcaaaaca ccatattttt caccaaattc ttttgccaca aaatcacttg caacacttaa
     6661 attttcaata ccttctgtac tgcaaaatct tcccatagca aaaggtaagt ccatacttac
     6721 tacaatcact tcagcaccat tgtaactggc tactttttta ttaaattctc tagcctctgt
     6781 agcacaaact ggtgtatcta agcttggaac acttaaaatg atttgagttt tacccgctgc
     6841 accgatttca atcacgctta aatctttagc tttaagattt accttaggag catctgctcc
     6901 aacttctact gaatttcctt taagttttac aggatttcct ttaaaattta ctgtactcat
     6961 ttaatttcct tttttgatat tttaaacatt attgcaatta atgttttagg agtgattata
     7021 tcctataaat attaattatt ttttaatttc actcaaaatt attttacttc tttccaagta
     7081 tattttttcc acactttttg agcttcctta ctcttaataa aatctacaaa ttctaaagct
     7141 tttttatttt ctaaaccttt ttttgtagga gcaatttcag ctgcacgata aatcactgca
     7201 tttttatctt tgataaataa agctttatca tcgcctaaag cctttgccca atgagaccaa
     7261 atgattaaag catcaatatt tggattgtta ttccactcat ctacagcagc tttggaattt
     7321 ttagcataaa tttttatatt tttacgtaat tttaccaaat tttctctttt tgcacttttt
     7381 aaagccatat cttcataaag tccaacttgt cctgcaccat caaccaccat aacatttatg
     7441 ccatctttta aaatgtcttc aaaattttta atattttttg gattatttgg acgcacgata
     7501 atacctgatg gacgcacatt taaaacgctt aaattttcca aacttaaact tggaattttt
     7561 ttagcaaaat catccatcat tgaagtattg cctgaaaaaa tcaaatctgc attttctttt
     7621 gctttatcta tccaagctgg agttggacct gcggttacaa tcaccttttc ttttgttttt
     7681 tcttcaaatt ttaaagcaag ctcttttagc acaggagcgg gaccacctgg accataaact
     7741 aaaatttcag catttaaaaa acttgctgct gctaaactta aaattaatat ttttttcata
     7801 aaataaacct ttctttataa taatataaag gaaattttat caatctatag ttaactctcc
     7861 cttgcaaagc cctgcttcta taagaaaacg agaaggagcg aaagaagttt ttttattttt
     7921 atcatattta gcatagctta aataaagtat attttttgcc ctagttactg caacataaaa
     7981 aagccttctt tcttcttcta aacttccacc cattcccata agcttttgat taggaaagcg
     8041 accttgcgca agatcaatca caaaaacaag atcaaattcc aagcccttgc ttgcatgtac
     8101 gctaagcaaa ttaactcctt tgccactact catttcactt gcacctaaag ttagaaaatt
     8161 ataatactta taaatatcgc tataattttt tgcaagctct tttaagacat tgaattttgt
     8221 ttctattttt tctaaatttt cactctttct taataaatcc acctgtcctg ctttatttgt
     8281 tgctcttttg gttgcaagtt cttcacaaat ttctctataa aaagaatttt cacaaattaa
     8341 atttaccaaa gtcaaagaat gttttatttc catagctttt tttaaaaaaa gataaatttt
     8401 ttctaaattt ctagcacata aatcattgat ttttgaaagt tttaaaatag gatgtgcatc
     8461 aaattcactc tcaaatttaa aacgagtttc gctggctaat tcttctaaat ccgcaaaaag
     8521 cccaagttga taatttcttt tttgatgatt ttgcaaattt acatttttat caggatctaa
     8581 aaaacctttt attaaatttc catgccctaa ttttaaaagt gcgtcaaaaa tttcttttgc
     8641 taaaactcca cccacacctt tggtgtattg aaccaaatga ataaaagcca taatatcctt
     8701 aggatttacc acaagagcaa gcatagagct aaaagcttta acttctaaac tttcaaaaaa
     8761 acttccactt ccctttctca cacttgcaat gccctgctcc cttaaagcta cttcaacccc
     8821 atcagcactt gagttgttgc gaaaaatcac ggcaatttct tccaaactta ctccacttgt
     8881 aagtatcatt ttagctatat tttgatattg atcaaataat tcttcaaaag taagcaaaga
     8941 tggggcttta aactcatcat ttcttgtaac aataagttct tttggatata atctttcatt
     9001 atttaaaatc actttattag ccaaagctaa aatacttctt gatgaacggt agtttttatt
     9061 taaagaaaaa atttttacat ctttaaaacg atctttaaac ccacctatga tattaatatc
     9121 cgctccatta aaagcataaa tactttgatc ataatccccc acgcaaaaca aacttttact
     9181 atgaaaagcc tctattaagg aactttgtaa agtatttgta tcctgatatt catccactaa
     9241 aatttcatca aattcatatt tttcttcttt taaaagatct tttagattga tgagcaagtc
     9301 attaaaatct acataattaa aacgcttttt ttcattatca tattctttta aaatatcttc
     9361 ataaatttca gcataaatac tttgatcttc atagttttga caaaaccaag tataaaaatc
     9421 ttgattgtgt gctttgtttt gaaacaaaga ataaagatca tataaataac ttgattgata
     9481 aggttttata tcacttaaat gtctaaaagt tcttttttca taaacacttt taagtaaagt
     9541 ttttaactcg cttgcttgct ttaaggctat atttttatca gcatttctaa gtaaggtata
     9601 agctgtacta tgaaaagttc ctgcaagtat tttactggta atatttttat caaaaaattt
     9661 ccctaaacgc cctatcattt ctttgctggc tttgtttgta aaagttaaaa gcatgatttt
     9721 ttgcggtgcc actcctttgc ttaaaagata agaaattctt gcaacaatag tagaagtttt
     9781 tcccgtccct gcacttgcaa tgacaagatt gtgtccaaaa tcagcagtag cggcaagata
     9841 ttgttcatta tttaattttg aaagtggcat tattttcctt ataaaagtta aaat
//
LOCUS       DAZBIH010000052         9892 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.053, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000052 DAZBIH010000000
VERSION     DAZBIH010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9892)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9892)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9892
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.053"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            123..1529
                     /gene="aspA"
                     /locus_tag="ACHFOB_001093"
     CDS             123..1529
                     /gene="aspA"
                     /locus_tag="ACHFOB_001093"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008797 - aspartate ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HFN5799902.1"
                     /translation="MGTRKEHDFIGELEISDEVYYGVQTFRAVENFDISHDRLKDFPR
                     FVRALARVKKAAAMANHELGLLDKNIQDAIIKACDKILEGGYYDQFVVDMIQGGAGTS
                     TNMNANEVIANIGLELMGHKKGEYQYLHPNDHVNLSQSTNDAYPTALHLALHDYLSDL
                     AKAMEHLKKAYERKAEEFKDVLKMGRTQLQDAVPMTLGREFKTFAVMIGEDIQRVLEA
                     RKLILEINLGGTAIGTGINSHPDYPKVVERKIREVTGFEYTVAEDLIEATQDTGAYVQ
                     ISGVLKRVATKLSKVCNDLRLLSSGPKCGLNEINLPKMQPGSSIMPGKVNPVIPEVVN
                     QVCYFVIGADVTVTFACEGGQLQLNVFEPVAAYSLFNSIVMLEKAMYTLADKCIDGIT
                     ANEKICSDFVYNSVGIVTALNPYIGYENSASIAKEAMNTGKRVADIALERGLLSKEQI
                     DEILTPSNMLNPHMEAKK"
     gene            1546..2883
                     /locus_tag="ACHFOB_001094"
     CDS             1546..2883
                     /locus_tag="ACHFOB_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0015556 - C4-dicarboxylate transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015740 - C4-dicarboxylate transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic C4-dicarboxylate transporter"
                     /protein_id="HFN5799903.1"
                     /translation="MDIMIILQVIVLLGAIFIGIRLGGIAIGYAGGLGVVILGLVLGM
                     KPGNIPWDVILIIAAAIAAISAMQQAGGLDYMVRVTEKILRSSPKFINYLAPACGWLL
                     TILAGTGNAVFSLMPVVVDVAKSQNIKPSVPLSLMVVSSQIGITASPVSAAVVYMSGV
                     LEPLGWNYPTLIGIWISTTFIACMLTAFIVSLITPMDLSKDSVYQERLKAGLVKDAGA
                     ILHGEDKPGAKLSVGIFLITVLAVVLYATAISSNIKWIDPVVVPRDAAIMSFLLTAAT
                     LITWLCKVEPGKILDTSVFKSGMTACVCVFGVAWLGNTFVAGHEASIKEVAGDWVKQT
                     PAMLAVAFFFASMLLYSQAATAKAIVPVIITALGISAANPHDSYMLVACFAAVSALFV
                     LPTYPTLLGAVQMDDTGTTRIGKFIFNHSFFIPGVLAIAIAVALGFVLAPMLI"
     gene            2991..4352
                     /locus_tag="ACHFOB_001095"
     CDS             2991..4352
                     /locus_tag="ACHFOB_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799904.1"
                     /translation="MKIKVGLIFSGIVCLFLTACVNQVKQNTTFENALTQKYCGDDFF
                     NQNLEKIKKNDDVIYTGLNAGLIARNCGDFNKSNVFFDAAEESYKYDVDLENVGSKAA
                     KFVGTTLLNDTIVDYDGSLYERIMVNIYKALNYMEEDDYENARVEFNRALMRQDKAKE
                     YFAKEIEKNRADLDKAKEDKNYDKNMNENSKVIEAQYDNLFKEFDTTKNFINPYATYL
                     ASIFFFMDKDYRKATDLFREVAIIYPKNKTIKKEAKIFKEYATKIKVKKAKKYVFVVY
                     ENGFGVVKDEFALTLPFIVDKKIISTNIALQTLKKREASFANLNINGQNTNDFVDLDN
                     IVATEFKINMPAMIAKALAQTIIKTTLNVAVANNDSTGGWLSLATAVATAATNKADVR
                     SWRGLPKSIAMATIENDGNLEIKDPQGNILFQKSLDKNKNALVIVRSFAPYLPASVAI
                     MEK"
     gene            4362..4730
                     /locus_tag="ACHFOB_001096"
     CDS             4362..4730
                     /locus_tag="ACHFOB_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcfL family protein"
                     /protein_id="HFN5799905.1"
                     /translation="MKKIILFILMFLLSACAPSYQINSNQNTVILGSNLPKSLVKQFQ
                     KRINSNGYLEFEVILRSTFAKDVIYKVDWLDKDGFVLRDVLNEDYQALRIPAGQEVIL
                     RKLASDIRAKDFRLEIKAKN"
     gene            4754..5377
                     /gene="lpoB"
                     /locus_tag="ACHFOB_001097"
     CDS             4754..5377
                     /gene="lpoB"
                     /locus_tag="ACHFOB_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein activator LpoB"
                     /protein_id="HFN5799906.1"
                     /translation="MKKTKILGTALIGALLFSGCAQTAYTDGKASQVKKGDALTLGLD
                     RQDFESAAETMINSMLSDPAFANIKPGTRKVIAIGRVVNDTPQRIDTEKLTAKITSAL
                     RKSGKFVLTSAVAAGGALDSMSEDVRELRDNDEFNQKTIAKKGTLVSPDFSLAGKIRQ
                     DNVKLSNGKTQVEYFFLLRLTDLTSGLVYWEDEQTIDKTGSSKTVTW"
     gene            5459..6796
                     /locus_tag="ACHFOB_001098"
     CDS             5459..6796
                     /locus_tag="ACHFOB_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6844 domain-containing protein"
                     /protein_id="HFN5799907.1"
                     /translation="MKKILFIGSLVMASLLYAQGSQPVEITQQDINTQNEMSDASTKD
                     ITPKSIEDFFEEFADNFGIEYGITKDGKTFYTGKSTVAVNDTDPQFAQALQNAYQKAM
                     LNLQSEFIRDVFGRIATSRIQNYEADNSTNAKEFDELPKGDKVDQILNKLTQLAGAQL
                     DKALKDLGIDTNSLSEDRKKTLLKQEFLNKTMTNAIGSMSGLVPVQTIVTQRRGEYDV
                     GVIAVISNKTRQLAKDMALARQSAIKGKGKAISEYLPKDTKGFLNEYGIRLVYDENGA
                     PIILSYGNWGYVADPSNAKKTNILEDRAKETALTMADAAIIEFINTNLSLKDERTTGD
                     TYEEIIKQSINVNDSSTQEQTQNITNIIDKVNSKIKASASGKIRGIRTLKKWSYTSEN
                     GIEHVGAVRFYSYENLANTNEALNSKSNATKNEAKKSSSIQRSSNVVNSMDDF"
     gene            6806..8008
                     /locus_tag="ACHFOB_001099"
     CDS             6806..8008
                     /locus_tag="ACHFOB_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsgG/HfaB family protein"
                     /protein_id="HFN5799908.1"
                     /translation="MKIIKILFLGLFLSLSLNAKVVTTTSTKSSTGEGTGLTREDAIN
                     NAIIEAIGKMSGVSINSLKKSNTSVSTDNSGSNIQDNYSEQISKATKGRADTYEINSV
                     EQDANGKYTANVTIFKTTTTKKYQVPGLSADNRRSITVFDSTLDAAKRGIGSALQQKI
                     ISDLLQSRKFNVLDRDSSGYYEMEKALIKSGDAASDEVYKLKNMLATDYILLFSISGL
                     EGKQKTSNLTGKSKTEIEVIVDYRVLLFATRQIKFSNTLSMKVNLKDNSLSANETALK
                     QIANRIAGDILNAIYPLKVASVENNEVIFSQSLNQGDVYECFALGKVIKDTYTKENTG
                     RVESKTGSIEITRTSPKFSYAKITEGSVKVGDICRPLSNTGSGNGYTIGRDANYQTQE
                     GGGVNLGF"
     gene            8167..8475
                     /gene="rplU"
                     /locus_tag="ACHFOB_001100"
     CDS             8167..8475
                     /gene="rplU"
                     /locus_tag="ACHFOB_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HFN5799909.1"
                     /translation="MYAIIKHSGKQYKVSVGDELKLDHFEAESKASIEVSEVLAINDK
                     ELKVGAPFVAGAKVVLEVINHGKDKKVVIYKKRRRKDSKLKRGFRRQFTRVVVKDIKA
                     "
     gene            8486..8740
                     /gene="rpmA"
                     /locus_tag="ACHFOB_001101"
     CDS             8486..8740
                     /gene="rpmA"
                     /locus_tag="ACHFOB_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HFN5799910.1"
                     /translation="MAHKKGQGSTQNNRDSIGRRLGVKKFGGEFVRAGNIIIRQRGTA
                     THAGNNVGMGKDHTIFALIDGFVKFERKDKDRKKVSVYPA"
     gene            8846..>9892
                     /gene="obgE"
                     /locus_tag="ACHFOB_001102"
     CDS             8846..>9892
                     /gene="obgE"
                     /locus_tag="ACHFOB_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HFN5799911.1"
                     /translation="MFIDSVKITLASGDGGKGAVSFRREKHVPLGGPDGGDGGNGGDI
                     IFVCDNNTHTLVNFKGKRELRAQNGAGGMGRNKNGKKGENLELIVPEGTQVIDAQTNE
                     ILLDLTEEGQRELFLKGGKGGLGNTHFKHATNQRPDYAQPGIKGESRLVRLELKLIAD
                     VGLVGFPNVGKSTLISVVSNAKPEIANYEFTTLTPKLGLVDVNEYNSFVMADIPGIIE
                     GASGGKGLGLAFLKHIERTSFLLFVLDPMRQMPLKEQFIVLRKELEKFSNELFGRKFG
                     IMISKSDSVRLGEEFAEQIALNINELDNYLKEINNPQSFLIKVSSLEKTGLKELKFML
                     LEEIKTLRNNKKNFN"
BASE COUNT         3589 a         1325 c         1870 g         3108 t
ORIGIN      
        1 attgtatttg aaagtagttt tcttattaac caattattaa ctaaaaatgc aatatcatta
       61 ttttatgatt taaatcaaaa atttttgatt ttaaattaaa atacttttat gaaaggttca
      121 aaatgggaac aagaaaagaa catgatttta ttggggaatt agaaatctct gatgaggttt
      181 attatggagt gcaaactttt agagctgttg aaaattttga tatttctcat gatagattaa
      241 aagattttcc tcgctttgtt agagctttgg ctagagtaaa aaaagctgca gctatggcaa
      301 atcatgaatt aggtcttttg gataaaaata tccaagatgc gattattaaa gcgtgcgata
      361 aaattttaga aggcgggtat tatgatcaat ttgtagtaga tatgatccaa ggaggtgctg
      421 gaacaagtac aaatatgaat gctaatgaag ttatagcaaa cataggactt gaacttatgg
      481 gtcataaaaa aggtgaatac caatatcttc atccaaatga tcatgttaat ttaagtcaaa
      541 gtactaatga tgcttatcct acagctttac accttgcctt gcatgattat ttaagcgatt
      601 tggcaaaagc tatggaacat ctaaaaaaag cttatgagag aaaagctgaa gaatttaaag
      661 atgttcttaa aatgggtaga acccaactgc aagatgctgt acctatgact ttaggtcgtg
      721 aatttaaaac ttttgccgta atgataggtg aagatataca aagagtatta gaagctagaa
      781 aattgatttt agagatcaat ttgggtggaa ctgctattgg aacgggaatt aattctcatc
      841 ctgattatcc gaaggttgta gaaagaaaaa taagagaagt gacaggtttt gaatatactg
      901 tggctgagga tttgatcgag gcgactcaag atacgggagc ttatgtacaa atttcaggtg
      961 ttttaaaacg tgttgcaaca aaactttcta aagtatgtaa tgacttaaga cttttaagca
     1021 gtggtccaaa atgtggtctt aatgagatta atcttccaaa aatgcaacca ggtagttcta
     1081 tcatgccagg taaggtaaat cctgttattc ctgaagtagt taatcaagtt tgttattttg
     1141 ttattggagc agatgtaact gtaacttttg cttgtgaggg tggacaatta caacttaatg
     1201 tttttgaacc agttgcagcg tatagtttat ttaattctat tgtaatgcta gaaaaagcaa
     1261 tgtatacttt agctgataaa tgtatagatg gtattactgc aaatgaaaaa atttgttcag
     1321 acttcgtcta taattcagta ggtatagtaa cagctttaaa tccttatatt ggctatgaaa
     1381 attcagcttc tatagctaaa gaggcaatga acactggaaa aagagtggct gatattgcgc
     1441 ttgaaagagg gcttttaagt aaagaacaaa ttgatgaaat tttaactcca tcaaatatgc
     1501 taaatcctca catggaagct aaaaaatagc attttaggat ttaatatgga tataatgata
     1561 attttgcaag taatcgtcct tcttggggcg atttttatcg gtattcgcct aggcggtatt
     1621 gctataggtt atgctggagg attaggtgta gttatactag gacttgtttt aggtatgaaa
     1681 cctggtaata ttccttggga tgttatttta attattgctg cagctattgc agcaatttct
     1741 gctatgcaac aagcaggtgg acttgattat atggtaaggg tgacagaaaa aattttaaga
     1801 tcaagcccta aatttataaa ttatttagct ccagcttgtg ggtggttgct tacaatctta
     1861 gcaggaacag gaaatgcagt attttcttta atgcctgttg tagttgatgt tgcaaaatct
     1921 caaaatataa aacctagtgt tccactttca ttaatggttg tttcttcgca aattggaatc
     1981 actgcttctc ctgtgagtgc agctgtggtt tatatgagcg gcgttttaga gccacttgga
     2041 tggaattatc caactttaat tggaatttgg atcagtacaa cttttatagc ttgtatgctt
     2101 acagctttta tagtgagttt aatcactcct atggatttaa gcaaagatag cgtttatcaa
     2161 gaacgtttaa aagcaggact tgttaaagat gcaggagcta ttttacatgg tgaagataaa
     2221 ccaggtgcta aactttcagt aggaattttc ttgatcactg ttttggcagt tgtgctttat
     2281 gcaaccgcaa tttcaagcaa tattaaatgg attgatcctg ttgtggttcc aagagatgca
     2341 gctattatga gctttttact tactgcagca actttgatca cttggctttg taaagttgaa
     2401 ccaggtaaaa ttcttgatac cagtgtattt aaaagtggta tgactgcttg tgtttgcgtt
     2461 tttggtgtag catggcttgg aaatactttt gttgcaggac acgaagcttc tattaaagaa
     2521 gtagcaggcg actgggttaa acaaacccct gctatgttag cagttgcatt tttctttgca
     2581 agtatgcttt tatattctca agcagcaacc gcaaaggcca ttgtacctgt aattatcacc
     2641 gctttaggaa tttcagcagc aaatccgcat gattcttata tgcttgtagc ttgttttgca
     2701 gcagtttcgg cactttttgt gcttccaact tatccaacct tacttggtgc tgtgcaaatg
     2761 gatgatacag gaacgactag aattggtaaa tttatattta atcactcttt ctttatacca
     2821 ggagttttag ctattgcaat tgctgtagca ttaggctttg tattagctcc tatgcttatt
     2881 taaatcaaac cctaggtttt tctctcctag ggttaaaatt ttttcattag tttttaagta
     2941 tatactacgc tataatattc atttttaatt ttctttaaga aaggaattta atgaagataa
     3001 aagttgggtt gattttttca ggtattgttt gccttttttt aacagcttgt gttaatcagg
     3061 ttaaacaaaa tacaacattt gaaaatgctc taacacaaaa atattgtggt gatgattttt
     3121 tcaatcaaaa tttagaaaaa attaaaaaaa atgatgatgt catttataca ggattaaatg
     3181 caggtttgat tgctagaaat tgtggtgatt ttaacaaaag taatgtattt tttgatgctg
     3241 cggaagaatc ttataaatat gatgtggatt tagaaaatgt aggctctaaa gcagctaaat
     3301 ttgttggtac aaccttgctt aatgatacta tagttgatta tgatggttct ttatatgaaa
     3361 gaattatggt taatatatat aaagctctaa actatatgga agaagatgat tatgaaaatg
     3421 caagagttga gtttaatcgt gctttaatgc gtcaagataa ggcaaaagaa tattttgcta
     3481 aagaaattga gaaaaatcgt gctgatttag ataaggcaaa agaagataaa aattatgata
     3541 aaaatatgaa tgaaaactca aaagttatag aagcacaata cgataacttg tttaaagagt
     3601 ttgatacaac aaaaaatttc ataaatcctt atgcgactta tcttgcttca atatttttct
     3661 ttatggataa agattataga aaagctacag atttatttag agaagtagct attatttatc
     3721 caaaaaataa aactatcaaa aaagaggcta aaatttttaa agaatatgcc acaaaaataa
     3781 aagtcaaaaa agctaaaaaa tatgtttttg tagtttatga aaatggattt ggtgtagtta
     3841 aggatgaatt tgctttaacc ttacctttta tagtggataa aaaaattatt agcacaaata
     3901 ttgctttaca aaccttgaaa aaaagggaag cttcttttgc aaatttaaat ataaatggtc
     3961 aaaatacaaa tgattttgta gatttagaca atattgttgc tactgaattt aaaataaata
     4021 tgcctgcaat gattgctaaa gccttagctc aaactataat taaaaccact ttaaatgtag
     4081 ctgttgcaaa taatgactct acaggtggat ggctaagtct tgcaacagca gtagcaactg
     4141 ctgcaaccaa caaagctgat gtgcgttctt ggagaggttt accaaaaagt attgccatgg
     4201 caacaataga aaacgacgga aatttagaaa tcaaagatcc acaaggcaat attttgtttc
     4261 aaaaatcatt ggataaaaat aaaaatgctc ttgtgatagt gcgttctttt gctccgtatt
     4321 tacctgcaag tgttgctatc atggaaaaat aaggctaaaa gatgaaaaaa attattttat
     4381 ttattttaat gtttttactt agtgcttgtg caccaagtta tcaaataaat tcaaatcaaa
     4441 atactgtaat tttaggttca aatttaccaa aaagtttagt aaaacaattt caaaagcgta
     4501 taaatagcaa tggttattta gaatttgaag tgattttacg cagtactttt gctaaagatg
     4561 taatttataa agtggattgg ttagataaag atggttttgt gctaagagat gttttaaatg
     4621 aggactatca agcccttaga attccagcag gacaagaggt gattcttcgt aaacttgcat
     4681 ctgatataag agcgaaggat tttagattag aaattaaagc aaaaaattaa tctcatttta
     4741 ggaaggataa atcatgaaaa aaacaaaaat tttaggaaca gctcttattg gagctttgct
     4801 ttttagtggt tgtgcgcaaa cagcttatac agatggaaag gcaagtcagg tgaaaaaagg
     4861 ggatgcttta accttgggtc ttgatagaca agattttgaa agtgcagctg aaactatgat
     4921 aaatagtatg ttaagcgatc ctgcttttgc aaatattaaa ccaggtacaa gaaaggttat
     4981 tgctattggt agggttgtga atgatacccc gcaaagaatc gatactgaaa aactcaccgc
     5041 aaaaatcact tctgcattaa gaaaatcagg taaatttgtt ctaacttcag cagttgctgc
     5101 aggcggagca cttgatagca tgagtgaaga tgtaagagaa ttaagagata atgatgagtt
     5161 taatcaaaaa accatagcaa aaaaagggac attggtatcg cctgattttt ctcttgcggg
     5221 taaaattaga caagataatg taaaacttag caatggtaaa actcaagtag aatacttttt
     5281 cttactaaga cttactgatt taacatcagg tttagtttat tgggaagatg aacaaactat
     5341 cgataaaacc ggttctagta aaacagttac ttggtaaaat aaaaattaat ttatgaataa
     5401 aatttttagc tcaagtgttt agcttgagct ttttttatga tttttaaaag gatatgaaat
     5461 gaaaaaaata ttatttatcg gctctttagt tatggcaagt ttactttatg cacaaggttc
     5521 ccagcctgta gaaattacac aacaagatat aaatactcaa aatgaaatgt ctgatgcaag
     5581 tactaaggat attaccccaa aatcaattga agattttttt gaagaatttg cggataattt
     5641 cggtatagaa tatggtataa ccaaagatgg aaaaactttt tatacaggaa aaagtactgt
     5701 tgctgtaaat gatactgatc cacaatttgc acaagcttta caaaatgctt atcaaaaagc
     5761 aatgttaaat ttgcaaagtg aatttataag agatgttttt ggaagaattg ctacaagcag
     5821 gattcaaaat tatgaagcag ataattctac taatgctaag gaatttgatg aattgccaaa
     5881 aggtgataag gttgatcaaa ttttaaataa acttacacaa ttagctggtg ctcagcttga
     5941 taaggcatta aaagatttag gtatagatac aaattcttta agcgaagata gaaaaaagac
     6001 tttattaaag caagaatttc ttaataaaac tatgacaaat gccataggtt ctatgagtgg
     6061 acttgttcct gtgcaaacta tagttacaca aagaagaggt gagtatgatg taggtgttat
     6121 tgctgttatt tccaataaaa ctcgccaatt agcaaaagat atggcactag caagacagag
     6181 tgctattaag ggtaaaggca aggcaataag tgagtatctg ccaaaagata caaaaggctt
     6241 tttaaatgaa tatggaattc gcttagttta tgatgaaaat ggtgcgccta ttattttaag
     6301 ttatggaaac tggggttatg tagcagatcc tagcaatgct aaaaaaacaa atattttaga
     6361 agatagagcc aaagaaacag cacttactat ggctgatgct gctattatag agtttattaa
     6421 tacaaattta agtcttaaag atgaaagaac aactggtgat acttacgagg aaatcatcaa
     6481 acaaagtatt aatgttaatg atagttccac tcaagaacaa actcaaaaca taacaaatat
     6541 tattgataaa gtaaatagta aaataaaagc aagcgcaagc ggtaaaattc gtggtattcg
     6601 tactcttaaa aaatggagct atacaagtga aaatggtatt gaacatgtag gagctgtgag
     6661 attttattct tatgaaaatt tagctaacac aaatgaggct ttaaattcaa agtcaaatgc
     6721 aacaaaaaat gaagctaaaa aatcttctag catacaaaga agctctaatg ttgtaaatag
     6781 tatggatgat ttttaaaggt aaaagatgaa aataattaaa attctttttt taggattatt
     6841 tttaagccta agtcttaatg ctaaagttgt gactacaact tcaacaaaat caagcacagg
     6901 cgaaggcaca ggcttgacta gggaagatgc gataaacaat gccattatag aagctatagg
     6961 aaaaatgagt ggagtaagca tcaattctct taagaaatct aacactagcg tttcaactga
     7021 taattcaggt tcaaatatac aagataatta cagcgagcaa atttcaaaag ccaccaaagg
     7081 tagagctgat acttatgaaa tcaatagtgt tgaacaagat gcaaatggta aatatacagc
     7141 caatgtaacg atttttaaaa ccacaacaac aaaaaagtat caagttccag gtttaagcgc
     7201 agataataga agaagtatta ctgtttttga ttctactcta gatgctgcaa aaagaggtat
     7261 aggctcagct ttgcaacaaa aaatcatttc tgatttattg caaagtcgta aatttaatgt
     7321 tttagaccgt gattctagtg gctattatga aatggaaaaa gctttaatca aaagtggcga
     7381 cgcagctagc gatgaagttt ataaacttaa aaatatgtta gcaacagatt atattttatt
     7441 gttttctatt tcaggacttg aaggtaaaca aaaaacaagc aatttaacag gaaaaagcaa
     7501 aactgaaatt gaagttatcg tagattatcg tgtgctttta tttgctacaa gacaaattaa
     7561 attttctaat actttaagca tgaaagtcaa tcttaaagac aatagtctta gtgccaatga
     7621 aaccgcactc aaacaaattg caaatcgtat agcaggagat attttaaacg caatttatcc
     7681 tttgaaagtt gcaagtgttg aaaacaatga agtaatattt tctcaaagct taaatcaagg
     7741 tgatgtttat gaatgttttg ctcttgggaa ggttataaaa gatacttata caaaagaaaa
     7801 tacaggaaga gtagaaagca aaacaggaag tattgaaatc actcgcacaa gccctaaatt
     7861 ttcttatgca aaaatcacag aaggtagtgt aaaagtgggc gatatttgca gacctttaag
     7921 taatactggt agtggaaatg gctacactat aggtcgtgat gcaaattatc aaacccaaga
     7981 aggcggcgga gtaaatctag gcttttaaat ttttagagtt tgatttttct caaactctaa
     8041 actctttctt aaattcatca aaaattaaag aaaaattttg taaaatcgaa attttattaa
     8101 accactaaag cttttaaatc cgttattacg gtgctttatg gtactaccaa tttataagga
     8161 aaagcaatgt atgctattat caaacacagc ggaaagcaat acaaagtaag tgttggcgat
     8221 gagctaaaac tagatcactt tgaagctgaa agcaaagcaa gtattgaagt aagcgaagtt
     8281 cttgctatca atgataaaga attaaaggta ggtgcgcctt tcgtagcagg tgcaaaagtt
     8341 gttttggaag tgatcaatca cggaaaagat aaaaaagttg tgatttacaa aaaaagacgc
     8401 agaaaagatt ctaaactcaa acgcggtttt agaagacaat ttactcgcgt tgtagtaaaa
     8461 gatatcaaag cttaaggagt aaagaatggc acacaagaaa ggtcaaggtt caactcaaaa
     8521 taaccgcgat tccataggtc gtcgtttagg tgttaaaaaa tttggtggcg agtttgttag
     8581 agctggaaat atcatcatcc gccaaagagg aactgcaact catgcaggta acaatgtagg
     8641 catgggaaaa gatcatacta tctttgctct aattgatggt tttgtaaaat tcgaaagaaa
     8701 agacaaagat agaaaaaaag tttctgtata tcctgcataa gtttttagga cgctttttag
     8761 cgtcttgaaa actttaaatt tataaattta acttctttta tttactcaaa tttagcttta
     8821 taaatttaaa gtcaaaggca attaaatgtt tattgatagt gttaaaatta ctttagcttc
     8881 aggcgatggt ggcaaaggtg ctgtaagttt tcgccgtgaa aaacatgttc cacttggtgg
     8941 ccctgatgga ggagatggtg gaaatggtgg tgatattatt ttcgtatgtg ataataatac
     9001 ccacactctt gtaaatttca aaggcaaaag agaattacgc gcgcaaaatg gtgctggtgg
     9061 aatgggacgc aataaaaatg gcaaaaaggg tgaaaattta gaacttatag tgcccgaagg
     9121 aacgcaagtt atcgatgcac aaaccaatga aattttactt gatcttaccg aagaaggaca
     9181 aagagagctt tttttaaaag gtggaaaagg tggacttggc aacacccatt ttaaacacgc
     9241 caccaatcaa cgccccgatt acgcacaacc tggtataaaa ggagaaagtc gcttagtcag
     9301 acttgaactt aaacttattg ccgatgtagg gcttgtgggc tttccaaatg tgggaaaatc
     9361 tactcttata agcgttgttt caaatgcaaa acctgaaatt gcaaattatg aatttaccac
     9421 ccttactcca aaacttggac ttgtagatgt aaatgagtat aattcctttg ttatggctga
     9481 tattccaggg attatcgaag gagcaagtgg gggtaaaggc ttaggacttg cctttttaaa
     9541 gcacatagaa agaacgagct ttttactttt cgtgctagat cctatgaggc aaatgccttt
     9601 aaaagaacaa tttatagtac taagaaaaga acttgaaaaa ttttccaatg aactttttgg
     9661 gcgtaaattt ggcatcatga tttcaaaaag tgatagtgtt cgtttaggag aggaatttgc
     9721 cgagcaaatt gctttaaaca ttaatgagtt agacaattat ctcaaagaaa taaataatcc
     9781 acaaagcttt ttaatcaaag tctcaagcct tgaaaaaaca ggacttaaag aacttaaatt
     9841 catgctttta gaagaaatta aaactttaag aaataacaaa aaaaatttta ac
//
LOCUS       DAZBIH010000053         9414 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.054, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000053 DAZBIH010000000
VERSION     DAZBIH010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9414)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9414)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9414
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.054"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..242
                     /locus_tag="ACHFOB_001103"
     CDS             <1..242
                     /locus_tag="ACHFOB_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="UDP-2,3-diacylglucosamine diphosphatase"
                     /protein_id="HFN5799912.1"
                     /translation="KNLFYQIKDFENLAKKRYERYENLGFWVCEGHYHQNHQINKENI
                     KYLNLASFAYERSFFVVEYQQEIKFREQKLRGQNV"
     gene            235..1191
                     /locus_tag="ACHFOB_001104"
     CDS             235..1191
                     /locus_tag="ACHFOB_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA];
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HFN5799913.1"
                     /translation="MFDENIVKTGSNEMELVDFRIFKQGHDKVYEGIYGVNVSKVREI
                     IKIPSLTELPGVPDYIEGIFDLRGVVIPVVNLAKWMQITEPESTMLKPRVIITEFSNI
                     LIGFIVHEAKRIRRINWKDIEPATFSTGSGALDKGKITGVTRIENDEVLLILDLESVV
                     EDLGIYAPKTDIDFGKIEKFTGTALILDDSMTARKRVKEMMQQMGFQVVEAKDGVEGI
                     NKLEELSQVYGESLNDTLKIIVSDVEMPQMDGFHFAARIKEDPRFKDIPIVFNSSLSN
                     EFMNEKGVQEAGGEGYLVKFNASDFFNEIAKVIKKHQSQEQG"
     gene            1195..3504
                     /locus_tag="ACHFOB_001105"
     CDS             1195..3504
                     /locus_tag="ACHFOB_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HFN5799914.1"
                     /translation="MEDMQEILEDFLVEAFELVEQIDHDLVELESNPEDLDLLNRIFR
                     VAHTVKGSSSFLNFDVLTKLTHHMEDVLNKARHGELKITPDIMDVVLESIDRMKTLLN
                     SIRDNGNDTAIGMDIEPICARLTAISEGESPVAATDSNEKSTPQAEPEAPKQETTTPE
                     PEVDVNQLSDSEVEAEIERLLKVRKAEDQARRAQKKQTTNAAPKPTNNTANKPAESGE
                     KKVPASGSNTSSMDQTIRVEVKRLDHLMNLIGELVLGKNRLLKIYDDVEERYEGEKFL
                     EELNQVVSQLSIITTDVQLAVMKTRMQPIAKVFNKFPRVVRDLSRELGKQIELEITGE
                     ETELDKSIVEEIGDPIMHMIRNSCDHGVEDPATRAANGKPEKGIVQLKAYNEGNHIVV
                     EITDDGKGLDPNGLKAKAIEKNLITEREADQMTDKEAFALIFKPGFSTAAKVTNVSGR
                     GVGMDVVKTNIEKLNGVIEIDSELGKGSSFKLKIPLTLAIIQSLLVGTQEEFYAIPLA
                     SVLETVRVPIDDIYTIEGKNVLRLRDEVLSLVRLSDVFGVKQVLESGDQTYVVVIGVA
                     ESKLGIIVDTLVGQEEIVIKSMGDYLQNIQGIAGATIRGDGRVTLIIDVGAMMDMAKE
                     IKVDIKAQLESSAKKPKEQPSDYKVLIVDDSKMDRTLMQKALEPLGVSLVEATNGVEA
                     LNIIKSGEHDIDAMLIDIEMPRMDGYTLAGEIRKYSKYRNLPLIAVTSRTSKTDRLRG
                     VEVGMTEYITKPYSPEYLENVVRKNLKLG"
     gene            3509..4030
                     /locus_tag="ACHFOB_001106"
     CDS             3509..4030
                     /locus_tag="ACHFOB_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006935 - chemotaxis [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheW"
                     /protein_id="HFN5799915.1"
                     /translation="MSNEKLEQILQKQQTQMAGPDVDQREDDIIQLVGFVVGDEEYAI
                     PILNIQEIIKPIEYTRVPSVPDYVLGVFNMRGNVMPLIDLAQRFHLGSSKMTPQTRYI
                     VLRGETNGTGVGGNAGFVIDRLTEAIKIHRNRIDPPPETLVKDKGMIYGIGKRDENIL
                     TILKVEALLKREF"
     gene            4030..4653
                     /gene="serB"
                     /locus_tag="ACHFOB_001107"
     CDS             4030..4653
                     /gene="serB"
                     /locus_tag="ACHFOB_001107"
                     /EC_number="3.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0036424 - L-phosphoserine phosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine phosphatase SerB"
                     /protein_id="HFN5799916.1"
                     /translation="MIKLCVFDFDATLMDGETIDILATAHGKGNQTSEITRHAMAGEL
                     DFFESLQKRVSLLKGMSYKKVLELGSTLPLMHGAHELIQYLKSKNIQIVIFSGGFHEG
                     IDPAMQKLGISLGFANYLHHKNDILTGLVGGEMMFSNSKGLMLQRLKSFLNLKTDEVM
                     CVGDGANDLTMFNESGLKIAFCAKEILRSKADICIDIKDLKEIIKVI"
     gene            4653..5630
                     /locus_tag="ACHFOB_001108"
     CDS             4653..5630
                     /locus_tag="ACHFOB_001108"
                     /EC_number="2.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transaldolase"
                     /protein_id="HFN5799917.1"
                     /translation="MKNFSLWCDFIENSFLDNEFLNLLSHGINGATSNPAIFKNAILN
                     SPIYKDKILKLKGKKTKDIYEELAISDIQKAADKLAPLFYQKNDGFISIEIDPRLHDN
                     TTLSLGEAKRLYSAISKENVMIKIPATKASYEVMYELMKNGISVNATLIFSLEQSQKC
                     FEALNAGLVEFRKNNIALKEQNTRTPQAVISIFVSRFDRLLNPKAKEQNRIGILNANL
                     AYNNIYSKNEPNIRALFASTGVKGDDLPKDYYIKELLFENSVNTAPLDAIEAFKGKMH
                     FKKPLMNFEIYTELNQIISQSEREKACNDLLSDGLEQFCIAFEDILKAL"
     gene            complement(5631..6053)
                     /locus_tag="ACHFOB_001109"
     CDS             complement(5631..6053)
                     /locus_tag="ACHFOB_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sua5 YciO YrdC YwlC family protein"
                     /protein_id="HFN5799918.1"
                     /translation="MIYLAQTDTTVGFLSKNLEEINALKGRDKNQPCLITSAKFCELK
                     SLARIPKSFKNLVRRSKKTTFIYPNNQAIRIVKECKHANFLSKNGYFYSSSANKHGKE
                     FDEEWARSVADIILDEKFFENIPSKILKLSKNKMIKIR"
     gene            complement(6050..9319)
                     /gene="carB"
                     /locus_tag="ACHFOB_001110"
     CDS             complement(6050..9319)
                     /gene="carB"
                     /locus_tag="ACHFOB_001110"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HFN5799919.1"
                     /translation="MPKRTDIKSILLIGSGPIVIGQACEFDYSGTQAAKTLKELGYRV
                     VLINSNPATIMTDPEFADATYIEPITKESILSIIKKEKIDAILPTMGGQVALNVAMEV
                     YESGLLGDVKFLGANPEAIKKGEDRQVFKECMKKIGMDLPKSMYAYNYDEALKAADEI
                     GFPLMIRASYTLGGAGSGVVYNMDEFKELANTALALSPIHEILIEESLLGWKEYEMEV
                     IRDRADNCIIVCSIENIDPMGVHTGDSITIAPALTLTDKEYQVMRNASFAILREIGVD
                     TGGSNVQFAINSKNGRMIVIEMNPRVSRSSALASKATGYPIAKVATLLAVGFSLDEIK
                     NDITGTPASFEPVIDYIVTKIPRFTFEKFPGANTTLGTAMKSVGEVMAIGRTFKESIQ
                     KALCSLERSLSGFDRVKFEDRNDLVFKIRNANEKRLLYVAQAFREGFSVEELYELCKI
                     DPWFLTQIKEIVDFEEQIDMDILNNKALLRKAKTMGFSDKMIALLVNLKDNLELSQND
                     IYYARMKQKIIAEFSEVDTCAGEFEALTPYLYSSINVSELTQSKNDAKDKKEKKVMII
                     GGGPNRIGQGIEFDYACVHASFALKDMGIKTIMYNCNPETVSTDYDTSDILYFEPIDF
                     EHLRAVIEREKPDGVIVHFGGQTPLKFAKRLSAFGAKIIGTSARVIDVAEDRKKFAEF
                     ITKLGINQPKNSTATSVEEAVLKASDIGYPVLVRPSYVLGGRAMRVVNDEAELRLYMQ
                     EAVDVSDKSPVLIDQFLDNATEIDVDAICDGKDVYVAGIMEHIEEAGIHSGDSACSLP
                     PCNIDEKMQEFIAQKTADIALNLGVVGLLNIQFALHNNELYMIEVNPRASRTVPFVSK
                     ATGIPLAKVATRVMWQGNLKEALKFYDTFKVVNFDTKILRPKTPKYMSVKEAVFPFAK
                     LSGSDLELGPEMRSTGEVMGISKDFANSYAKSQIASFNHLPEQGVVFISLKDKDKKYT
                     KKIAAEYVKLGFKLMATGGTCKEILESGFECELVHKISEGRPNVEDKLKNGEIHLVIN
                     TSDSHSFKGDTKKIRENIIRFKIPYFTNLRSALAGAKSIKAIQSKSCLDVKSLQEWLK
                     S"
BASE COUNT         3285 a         1551 c         1573 g         3005 t
ORIGIN      
        1 aaaaaaacct tttttatcaa ataaaagatt ttgaaaattt agcgaaaaaa agatatgaaa
       61 gatatgaaaa tttaggattt tgggtatgtg aaggacacta tcatcaaaat catcaaatca
      121 acaaagaaaa cattaaatat cttaacttag ctagttttgc atatgagaga agtttttttg
      181 tagtagaata tcagcaagaa atcaaatttc gagaacagaa attgaggggt caaaatgttt
      241 gatgaaaata tcgtgaaaac gggttcaaat gaaatggagc ttgtcgattt ccgtatcttt
      301 aagcaaggac acgataaagt ctatgaagga atttatggtg taaatgtttc taaggtaagg
      361 gagattataa aaatcccaag ccttacagaa cttccaggtg tacctgatta catcgaaggt
      421 atctttgatc ttcgtggagt ggttatacct gtagtcaatc ttgccaaatg gatgcaaatc
      481 actgagccag aaagcactat gttaaaacct agggttatta ttactgaatt tagcaatatt
      541 cttattggtt ttatagttca cgaagcaaaa agaattcgta gaataaactg gaaagatata
      601 gaaccagcaa ctttttctac aggatcaggt gctttagata aaggtaaaat cacaggtgta
      661 acacgcattg aaaatgatga agtgttgcta attttagatc ttgaaagtgt tgttgaagat
      721 ttaggaattt acgctccaaa aacagatata gattttggaa aaatagaaaa atttactgga
      781 acagcactta tacttgatga cagcatgact gctagaaaac gcgtcaaaga aatgatgcaa
      841 cagatgggct ttcaagttgt tgaagctaag gacggcgtag agggcataaa caaattagaa
      901 gaattaagcc aagtttatgg tgaaagttta aatgatactt taaaaattat agtaagcgat
      961 gtcgaaatgc cacaaatgga tggtttccac tttgctgcac gcattaaaga agatccaaga
     1021 tttaaagata ttcctatagt ctttaactcg tctttatcaa atgaatttat gaatgagaaa
     1081 ggtgttcaag aagctggtgg agaaggctat cttgtcaaat ttaacgctag cgatttcttc
     1141 aatgaaattg caaaggttat caaaaaacat caatctcaag aacaggggta aaatatggaa
     1201 gatatgcaag aaatacttga agactttttg gttgaagctt ttgagcttgt tgagcaaatc
     1261 gaccatgatt tagtagagct tgaatcaaat ccagaagatt tagatttatt aaatagaatt
     1321 ttccgtgttg cacatacggt taaaggatca tcaagtttct taaattttga tgttttaacg
     1381 aagttaactc accacatgga agatgtttta aacaaagcaa gacatggcga gttaaaaata
     1441 actccagata tcatggatgt ggttttagag tctattgata gaatgaaaac tttgcttaat
     1501 tccattcgtg ataatggcaa cgatactgct attggtatgg atatagaacc aatttgcgca
     1561 agattaacag ctatttcaga aggagagtct cctgttgcgg caacagattc aaatgaaaaa
     1621 tctactccac aagcagaacc agaagcacca aaacaagaaa caactactcc tgaacctgaa
     1681 gtagatgtta atcaattaag tgattctgaa gttgaagctg aaatagaaag acttttaaaa
     1741 gttagaaaag ctgaagatca agctcgtcgc gcacaaaaga aacaaacaac aaatgcggca
     1801 cctaaaccga ctaacaatac agcaaataaa cctgcggaaa gtggagagaa aaaagttcct
     1861 gcttcaggta gcaatactag cagtatggat caaaccatac gcgtggaggt aaaaagatta
     1921 gatcacttaa tgaatctaat tggggagctt gttttaggta aaaaccgttt gcttaaaatt
     1981 tacgatgatg ttgaagagcg ttatgaagga gaaaaattcc ttgaagaact taatcaggtt
     2041 gtaagtcaat taagtattat tacaactgat gttcagcttg ctgtaatgaa aacaagaatg
     2101 caacctatag caaaagtttt caataaattc ccaagagttg ttcgtgattt gagtcgtgaa
     2161 ttaggaaagc aaatagaact tgaaattaca ggtgaagaaa ctgaacttga taaatctatc
     2221 gtagaggaaa ttggcgatcc tatcatgcat atgattagaa attcatgtga ccatggtgtt
     2281 gaggatccag caactcgtgc agctaatgga aaacctgaaa aaggtatagt tcaacttaaa
     2341 gcttataatg aaggcaatca catcgttgta gaaattacag acgacggtaa aggacttgat
     2401 ccaaatggct taaaagcaaa agctatagag aaaaatttga ttaccgaaag agaagcagat
     2461 caaatgacag acaaagaagc ttttgctttg attttcaaac ctggtttttc aactgcggct
     2521 aaagtaacaa atgtttcagg tcgtggcgta ggaatggatg ttgttaaaac caacatcgaa
     2581 aaactaaatg gggtaattga aattgatagt gagttaggta aaggaagttc gtttaaactt
     2641 aaaattcctc ttaccttggc aatcattcaa tctttacttg taggaactca agaagaattt
     2701 tatgcaattc cacttgcaag cgttcttgaa acagttagag taccaattga tgatatctat
     2761 actatcgaag gtaaaaatgt attacgctta agagatgaag tgctttctct tgtgagactt
     2821 tcagatgtat ttggagttaa acaagtcctt gaaagcggtg atcaaactta tgtcgttgtt
     2881 ataggggtag cagaaagcaa gcttggtatt atagtagata ctcttgtagg acaagaagaa
     2941 atagttatta aatccatggg tgattattta caaaatatcc aaggcatagc aggagctaca
     3001 atccgtggtg atggtagagt gacattaatc attgatgtag gtgctatgat ggatatggcc
     3061 aaagaaatta aagttgatat taaagcgcaa ttagaatcaa gcgcgaaaaa acccaaagaa
     3121 caaccaagtg attataaagt cttaattgta gatgattcta aaatggatag aaccttaatg
     3181 caaaaagctt tagaaccgct aggagttagt ttagttgaag caacaaatgg tgttgaagca
     3241 ttgaatatta taaaatctgg cgaacatgat attgatgcaa tgcttataga tatcgaaatg
     3301 ccaagaatgg atggatacac cttagctggt gaaattagaa agtattctaa atatcgtaac
     3361 ttaccactca ttgcagttac ttcaagaaca agtaaaactg accgcttaag aggtgttgaa
     3421 gtgggtatga ctgaatatat cactaaacct tattctccag aatacttgga aaatgtagtt
     3481 agaaaaaatt tgaaactagg ataagaatat gagtaatgaa aaattagagc aaattttgca
     3541 aaaacagcaa actcagatgg ctggtcctga tgtcgatcaa agagaagatg atatcatcca
     3601 acttgtcggc tttgtagttg gagatgagga atatgcgatt ccaattctta atatacaaga
     3661 aatcatcaaa cctatagaat atactagagt tcctagtgta cctgattatg ttctaggggt
     3721 ttttaatatg cgtggtaatg ttatgccact cattgatcta gctcaacgct ttcatttagg
     3781 aagttctaaa atgacacctc aaacaagata tattgtttta agaggtgaga caaatggaac
     3841 tggagttgga ggaaatgctg gttttgttat agatagatta actgaagcaa ttaaaattca
     3901 cagaaacaga atcgatccac cacctgaaac tttagttaaa gacaaaggta tgatttatgg
     3961 tataggaaaa agagatgaaa atatcttaac tatactcaaa gtagaagctt tacttaagcg
     4021 cgaattttaa tgattaaact ttgtgttttt gactttgacg ctactttaat ggatggtgaa
     4081 accatcgata ttttagctac agcgcatggc aagggtaatc aaacaagcga aattacccgc
     4141 catgccatgg ctggagagct tgattttttc gaaagtcttc aaaaacgagt aagcctttta
     4201 aaaggtatgt cttataaaaa agttttagaa ttaggtagta cacttccact aatgcatgga
     4261 gcacatgaac ttatccaata tttaaaatct aaaaatatac aaattgttat ttttagcggt
     4321 ggttttcatg aaggcataga tcccgctatg caaaaacttg gaattagcct tggttttgca
     4381 aattatctgc atcataaaaa tgacatttta acagggctag ttggtgggga aatgatgttt
     4441 tcaaattcaa aaggcttaat gctacaacga ttaaaaagct ttttaaattt gaaaacagat
     4501 gaagtgatgt gtgttggcga tggggcaaat gatttgacaa tgtttaacga aagtggatta
     4561 aagattgcat tttgtgctaa agaaatttta cgttccaaag ctgatatttg catagatata
     4621 aaagacttaa aagaaataat aaaggtaata taatgaaaaa tttttctctt tggtgtgatt
     4681 ttatagaaaa tagtttttta gataatgaat ttttaaattt attatcacat ggaattaatg
     4741 gtgctacttc aaatcctgct atttttaaaa atgctatttt aaattctcca atttataaag
     4801 ataaaattct taaattaaaa ggaaaaaaaa caaaagatat ttatgaagaa ttagcaattt
     4861 ctgatattca aaaagcagct gataaattag ctcctctttt ttatcaaaaa aacgatggat
     4921 ttataagtat tgaaatagat ccaagacttc atgataacac gactcttagt ttaggcgaag
     4981 ctaaaagact ttatagtgct attagcaaag aaaatgtaat gattaaaatt ccagctacaa
     5041 aagcttctta tgaagtaatg tatgaactta tgaaaaatgg tattagcgtc aatgctacct
     5101 taattttttc tcttgaacaa agtcaaaaat gttttgaagc tttaaatgca ggtttagtcg
     5161 aatttagaaa aaacaatata gccttaaaag aacaaaatac tagaacacca caagctgtta
     5221 taagtatttt tgtaagtcgt tttgatagac ttttaaatcc taaagccaaa gagcaaaatc
     5281 gtattggaat tttaaatgca aatttagctt ataataatat ctactcaaaa aatgaaccta
     5341 atattcgcgc cttgtttgca agcaccggag ttaaaggaga tgatctgcca aaagactatt
     5401 atatcaaaga acttcttttt gagaattctg ttaatactgc tcctcttgat gcaatagagg
     5461 catttaaagg aaaaatgcat tttaaaaaac ctttaatgaa ttttgaaatt tatacagaac
     5521 ttaatcaaat catttctcaa agtgaacgag aaaaagcttg caatgattta ttaagtgatg
     5581 gcctagagca attttgtatt gcttttgaag atattttaaa agctctttaa ttaacgtatt
     5641 tttatcattt tattctttga aagttttaat atttttgatg ggatattttc gaaaaatttc
     5701 tcatcaagta ttatatcagc aacacttcta gcccattctt catcaaattc ttttccatgc
     5761 ttgtttgccg aagatgaata aaaatagcca tttttactta aaaaattcgc atgtttacac
     5821 tctttcacaa tacgaatggc ctgattattg ggataaataa aagttgtttt tttagaacga
     5881 cgtactaaat ttttaaaaga ttttggaatt cttgctaaac tttttaactc gcaaaatttc
     5941 gcagaagtga ttaagcaagg ctgattttta tctctacctt ttaaagcatt aatctcttct
     6001 aaatttttac ttaaaaatcc taccgtagta tctgtttgag ctaaataaat caagatttaa
     6061 gccactcttg taaactcttt acatctaggc aagatttact ctgtatagct ttaatcgatt
     6121 ttgcacctgc taaagctgat cgtaaatttg taaaataagg tattttaaaa cgaataatat
     6181 tttcacgaat ttttttcgta tcgcctttaa aactgtgact atcgcttgta ttgataacta
     6241 agtgaatttc cccatttttc aatttatctt caacattggg gcgtccttct gaaattttat
     6301 gtacaagttc gcactcaaaa ccactttcta aaatttcctt gcaagttccc cctgttgcca
     6361 taagcttaaa gccaagcttt acatattctg cagcgatttt tttggtatat tttttatcct
     6421 tatcttttaa ggagataaat accacgcctt gctctggaag atgattaaac gatgcaattt
     6481 gacttttcgc ataagaattt gcaaaatcct tgcttatacc cataacttca cccgttgaac
     6541 gcatttcagg acctaattct aaatcacttc cactaagttt tgcaaatgga aatactgctt
     6601 ctttcacgct catatatttt ggagttttag ggcgtaaaat tttagtatca aaattaacca
     6661 ctttaaaagt atcataaaat tttaaagctt cttttaaatt tccttgccac atcacacgcg
     6721 ttgccacttt tgctaaagga atacccgtag ctttactaac aaaaggtacg gtacgactag
     6781 ctctaggatt tacctctatc atataaagct cattattatg taaagcaaat tgtatattta
     6841 aaagtcctac aactcccaaa tttaaagcaa tatctgcggt tttttgtgca ataaattctt
     6901 gcattttttc atcgatattg caaggcggca aagaacaagc actgtcacct gaatgaattc
     6961 ctgcttcttc tatgtgctcc ataattcctg caacataaac atctttacca tcacaaatcg
     7021 catcaacatc aatttctgta gcattgtcta aaaactgatc gatcaaaaca gggcttttat
     7081 cgcttacatc cacagcttct tgcatataga gtctaagttc agcctcatca tttaccacgc
     7141 gcatcgcacg cccacctaaa acataacttg gtcttacaag cacaggatac cctatatcac
     7201 tagccttaag aaccgcttct tctacgcttg ttgcagtaga attttttggc tgattgatac
     7261 ctagctttgt aataaattcg gcaaatttct ttctatcttc tgccacatca attactcttg
     7321 cgctagtacc tataatctta gctccaaaag cacttaaacg cttagcaaat ttcaaaggag
     7381 tttgtccacc aaaatgcaca atcactccat caggtttttc acgctcaatc accgctctta
     7441 aatgttcgaa atcaataggc tcgaaataca aaatatcact tgtatcatag tcagtcgaaa
     7501 cggtttcagg attacaatta tacataatag ttttaatacc catatcttta agcgcaaaag
     7561 aagcatgtac gcaagcatag tcaaattcta taccttgtcc tatacggttt ggccccccac
     7621 ctataatcat cacttttttt tcttttttat ccttagcatc gtttttactt tgagtgagtt
     7681 cgcttacatt gatacttgaa taaagataag gagttaaggc ttcaaattca cccgcacaag
     7741 tatccacttc actaaattct gcgatgattt tttgcttcat tcttgcataa taaatatcat
     7801 tttggcttaa ttctaaatta tctttcaaat ttacaagcaa ggctatcatt ttatctgaaa
     7861 agcccatagt ttttgctttt ctcaaaagag ccttattgtt taaaatatcc atatcaattt
     7921 gttcttcaaa atctacaatt tctttaatct gtgttaaaaa ccaaggatct attttacaaa
     7981 gctcataaag ttcttctacg ctaaaacctt ccctaaaagc ttgagcaaca taaagtaaac
     8041 gcttttcatt ggcattacga attttaaaaa caagatcatt tctatcttca aattttaccc
     8101 tatcaaaacc acttaaagaa cgctcaagcg aacaaagtgc tttttgtata ctttctttaa
     8161 aagtgcgtcc tatagccatt acctcaccca cacttttcat agctgtacct aaagttgtat
     8221 ttgctcctgg aaatttttca aaggtaaagc gaggaatttt tgttacaata taatcaatca
     8281 caggctcgaa agatgcagga gttcctgtaa tatcattttt aatctcatct aagctaaaac
     8341 ctactgccaa aagtgtcgca acctttgcta taggataacc cgttgcctta gaagctaaag
     8401 cacttgatct tgaaactctt ggattcattt ctataactat cattcttcca ttttttgagt
     8461 tgatagcaaa ttgcacatta cttccgcctg tatctacacc aatttcacgc aaaatagcaa
     8521 aagaagcatt acgcataact tgatattctt tatccgtcaa agttaatgct ggagctattg
     8581 taatactatc tcctgtatga actcccatag gatcgatatt ttctatgcta caaactatga
     8641 tacaattatc cgctctatcg cgtataactt ccatttcata ttctttccaa cctaacaaac
     8701 tttcttcaat caaaatttca tggataggtg ataaagctaa agcagtattg gcaagttctt
     8761 taaattcgtc catattgtaa accacgccac ttccagcacc ccctaaagta taagaagcac
     8821 ggatcatcaa aggaaagccg atttcatctg cggcttttaa agcttcgtca taattatacg
     8881 catacatcga ttttggcaaa tccatgccaa tttttttcat acattcttta aaaacctgac
     8941 gatcttcgcc ttttttaatc gcctcaggat ttgcgcctaa aaatttcaca tctcctaaaa
     9001 gtccgctttc ataaacttcc atagcaacat ttaacgctac ttgtccaccc atagttggca
     9061 aaattgcatc aattttttct tttttaataa tacttaaaat actttctttt gttatgggtt
     9121 ctatataagt cgcatctgca aattcgggat ctgtcatgat ggttgcagga tttgagttga
     9181 ttaatactac acgatatcct aattctttta aagtctttgc ggcttgagtt ccagaataat
     9241 caaattcaca agcttgtcct atcacaatag gaccacttcc tataagtaaa atgcttttaa
     9301 tatctgttcg ttttggcata aattttccta agagcataaa tttgggctga ttataacaaa
     9361 aattagtttt ataaactttg aaattatcga tataatttta aaaaataaac actc
//
LOCUS       DAZBIH010000054         9170 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.055, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000054 DAZBIH010000000
VERSION     DAZBIH010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 9170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9170
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.055"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..350)
                     /locus_tag="ACHFOB_001111"
     CDS             complement(<1..350)
                     /locus_tag="ACHFOB_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EI24 domain-containing protein"
                     /protein_id="HFN5799920.1"
                     /translation="MDILKLAIKDFLSLKFLKFALIPLIFSLILMLFLGVLGFSALLD
                     YFNSLFSVGEDSFWAWFYALHFVQILITIISFLFSGFIVVFASVFLALFITSFLTPFI
                     AKEINQKYYHYDNT"
     gene            complement(352..1041)
                     /gene="dut"
                     /locus_tag="ACHFOB_001112"
     CDS             complement(352..1041)
                     /gene="dut"
                     /locus_tag="ACHFOB_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HFN5799921.1"
                     /translation="MTNIEILENMLKLQQKLNDETNGLNWENGYTKEGKLISWRRCIY
                     MECAELIDSFAWKHWKNISNPTNWENVRIEIVDIWHFILSLLLEEYRDKNGKDLKAIA
                     TEVNAVSVFQDFCKEEEYPNEGDIYGILNDIELIIHKCSGFGFNLGELLSTYFTLAIK
                     CGLNLEILYKTYIGKNVLNIFRQNNGYKDGSYKKTWNGKEDNEVLAQILEQELDFDTI
                     YKKLEECYKKA"
     gene            complement(1077..1640)
                     /gene="ciaI"
                     /locus_tag="ACHFOB_001113"
     CDS             complement(1077..1640)
                     /gene="ciaI"
                     /locus_tag="ACHFOB_001113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="intracellular survival protein CiaI"
                     /protein_id="HFN5799922.1"
                     /translation="MQIDASKNQSFSMDYTTKSGKHLALSMYDNQSISYANNEEGKTL
                     NLKRQYGFSFTFEGSKLTQNDLDEIKNAMKEVEPMIKDFLANSKVGELKPKEIIESAM
                     QMANVLPTPNDKNHQNAIMNNFTNKLSDLLKQNQTNDKDINTSMLEDSKKLLDEVLEQ
                     MKKQLEKQQEKAKENQDKTDDSLNLYA"
     gene            1715..2122
                     /locus_tag="ACHFOB_001114"
     CDS             1715..2122
                     /locus_tag="ACHFOB_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799923.1"
                     /translation="MDERILEFIKNEQLLSWAMIDEKGVYTASAFYAFDEKNLAFIIA
                     SHEDTKHIRLASENSSIALNIAKENKIAFLKGVQAKAEFKIANKEQMKIYFSKFPFAK
                     LDKSAKIYALELFWLKFTNNALGLSKKLEFCKK"
     gene            2194..2976
                     /gene="kpsM"
                     /locus_tag="ACHFOB_001115"
     CDS             2194..2976
                     /gene="kpsM"
                     /locus_tag="ACHFOB_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule polysaccharide transporter KpsM"
                     /protein_id="HFN5799924.1"
                     /translation="MLNVIHALFFRELKTRFGKNRYLGYIWVVGEPMSVVLLVTIIGT
                     VIREYHHQVMPEGISIFMFLISGIMPFFMFRSIVTQLMNGIGANLSLFAYKPVKPIHV
                     FIARTLLEFCIYFVIFITVLFFAGWFFRLDVFPVHLLGVLFCIFLLICSAFALGICFA
                     IVWHFVESLRTLLAYFSIVFYWSSGIIFPTWLTPRPLLDIFYYNPLLHIFELLRFNFF
                     ENYPLQDEYSYFYAIFWILLVLFIGLFIYYYNRQALTAAKKE"
     gene            2973..3635
                     /gene="kpsT"
                     /locus_tag="ACHFOB_001116"
     CDS             2973..3635
                     /gene="kpsT"
                     /locus_tag="ACHFOB_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002781126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799925.1"
                     /translation="MIKLINLTKSYPLFSGGRHYVFKNFTFEFPENCSIGLMGGNGAG
                     KSTLMRLLSGAELPDNGKIITNKKLSWPLGLNGAFQGSLTARDNAKFVARVYGYKGKE
                     LQEKVKFVEDFAELGKFFDEPMKTYSSGMSARIAFGLSMAFDFDYYLIDEAGAVGDPA
                     FREKSVKLYRERLSKSKVIMVSHNVAEIKEWCDKIIYMKNGQITVYDDVDEGIAVYQG
                     KA"
     gene            3635..4753
                     /gene="kpsE"
                     /locus_tag="ACHFOB_001117"
     CDS             3635..4753
                     /gene="kpsE"
                     /locus_tag="ACHFOB_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="capsule biosynthesis protein"
                     /protein_id="HFN5799926.1"
                     /translation="MEENKTLLEKIKDLSIFDSFKIVWFIMILVVIYYTLIAAPRYVS
                     TMILDVRSTSGESAQTSGILSLLSSTSTASEDLNYLKGYIESSDMLKILDEKIKLKSL
                     YQEQYIDLPFKIWDSSSIESYLKYYQARVKVHTDETTKLLQVEVEGFTPKSAHLIAQT
                     IMQESEKFINEISHKAAREQMAFAENEVQKYKERYQKAQNDLIAFQNKYGVFDPLKQA
                     EAKASLVAQIETNLAQKEAKLLTLQSYMNDAAPEVVALKAEIEAIKKQLLREKSKISA
                     NNSSQKLNDLAAKFQDLTIEATFAQKAYEAALKAYESARIEALRKIKQLVIIQSPDIP
                     ESAKYPERIYDILTAFIVLSLIFGIVKFIKMIIEEHKY"
     gene            4755..6413
                     /gene="kpsD"
                     /locus_tag="ACHFOB_001118"
     CDS             4755..6413
                     /gene="kpsD"
                     /locus_tag="ACHFOB_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015159 - polysaccharide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015774 - polysaccharide transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis/export family
                     protein"
                     /protein_id="HFN5799927.1"
                     /translation="MKKILILLFSCILCFGAVDVSQIISAEDQGSTTTSIDQNLSSNY
                     DIANKENNLTKIHQILVFGAHLFNGNFKNYNQRVYNPDYKIAVGDQISLKIWGAVEFS
                     QVLVVDSQGNIFIPKVGAVNLLGVKNSALVSVIKARVNKIYKSNVFVYADMNAYQNVS
                     VFVTGSVNAPGLYQGLSSDSVIQYLDKAGGINLEYGSFRDIQILRNNSVIKNIDLYDF
                     LLKGQMDLFPFRSGDVILVGNVQNYAFVDGDVQRPFRFELSNDIKTLADLARVSGAKP
                     IVTNAIVKSYGEDHKLDVSAYNKMQFSKVLLRTGDEVEFHPEYVSKNITISVNGEHNG
                     LKTLVVGKGTTLEDISKLIKANPQSNMQALQVFRKSVARTQKELINAQLKELETLALT
                     SGSVTAQGAAIRAQQAKTILEFIQRAKQVEPKGQIVIDNPKSYNSVILEDGDTINVPS
                     KNNLIIVQGEVSLPGAFVYDKGKDLRYYINLAGGYGERADTSKVLVIRSNGKAEKYHS
                     GIDMKPGDSVLVLPKVDSENLQIFSMLTQILYQIAIATNVVLNL"
     gene            6423..7370
                     /gene="kpsF"
                     /locus_tag="ACHFOB_001119"
     CDS             6423..7370
                     /gene="kpsF"
                     /locus_tag="ACHFOB_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KpsF/GutQ family sugar-phosphate isomerase"
                     /protein_id="HFN5799928.1"
                     /translation="MNTLEIAKEVFEKEAQAILDLAKNLDENFNQAVNLMLNTKGRCI
                     VSGMGKSGHIGAKIAATLASTGTPSFFIHPGEALHGDLGMLTPEDVLIAISNSGETEE
                     ILKIIPAIKKRKIPLIVMCGKKNSTLVKQSDIFLNIAVEKEACPLQLAPMSSTTATLV
                     MGDALAAALMKVRNFKPDDFALFHPGGSLGRKLLTKVKDLMVSSNLPIVHPDTEFNDL
                     VDVMTSGKLGLCVVLENEKLVGIITDGDLRRALKTSDKPRFDFRAKEIMSTNPKVVDA
                     DAMASEAEEIMLKHKIKEIVVSKEDKVVGIIQLYAIGNV"
     gene            7376..>9170
                     /locus_tag="ACHFOB_001120"
     CDS             7376..>9170
                     /locus_tag="ACHFOB_001120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HFN5799929.1"
                     /translation="MPLLSVVIPFGLSKERSYIEERVLQKAKFFQSDENMEFIFVEGY
                     SSLKNNLKQIIENSGHIYLKDDDQKDYFSQGKCRNLGAVYANSKVIMFLDVDCYISLL
                     SLEKILNLIKVKNIAQNINELLVLPVVYLSQSGSEKIYKEDKYLWDEIIKHDLITGKR
                     KLIKYFSLISSSIIVNRYKFLVLGGNNHNFIGHSYEDHDFFARLLFYTTNFSNTPKAL
                     CYDEGTWNIRKFKGFRAWFSLLGYEMSFHGIYMYHFYHEEPNQNNYMSYRHKNHKIFY
                     KNLANLKNYQIKPLLDKDALKNNILLLCSKEKLILNSLHSALVYIGNVISKNENYFFE
                     DEKFNQDKLLDFLKQNNINKILFPNPYGNEKRLKIYKFAKSENIDFVCFDRGALPDSW
                     FFDTNGFNYDSNLYNEENWNKVLSKSQILECKEYINSIIDGNNFLEKQGKRNFNYLKD
                     KFFVNDKKIVFVPLQVESDTVIKYFTYKPFDWSGFLDIINDMAFKLRQTHIFLVKKHP
                     LSLKIAKSKYKNLNFISNKTNIIDAISLCDVVVTLNSGVGLYAMIMNKPCINCANAFY
                     NFQGLNFQAHNSDELLRFLVSDLKIDYNKVLK"
BASE COUNT         3204 a         1119 c         1584 g         3263 t
ORIGIN      
        1 tttgtattat cataatggta atatttttgg ttgatttctt tagcgataaa aggagtaaga
       61 aaagaagtga taaaaagggc taaaaaaacc gaagcaaaaa caacaataaa acctgaaaat
      121 aaaaaactta tgatggtgat taaaatttgt acaaaatgaa gagcataaaa ccacgcccaa
      181 aacgaatctt ctccaacgct aaataaagaa ttaaaataat caagcaaggc tgaaaagcca
      241 agtactccta aaaaaagcat cagtataagg ctaaaaatca aaggaattaa ggcaaatttt
      301 aaaaatttaa gacttaaaaa atctttgatt gcaagtttta aaatatccaa attatgcctt
      361 tttgtagcat tcttctagtt ttttataaat agtatcaaaa tcaagctctt gttctaaaat
      421 ttgagctaaa acttcattgt cttctttgcc attccaagtt tttttatagc tgccatcttt
      481 gtaaccattg ttttgtctaa aaatatttaa aacattttta cctatgtagg tcttataaag
      541 aatttcaaga tttagcccac atttaatagc tagggtaaaa taggttgaaa gtaattctcc
      601 aagattaaat ccaaaaccac tgcatttatg gataataagc tctatatcat ttaaaatgcc
      661 ataaatatca ccctcattag ggtattcttc ttctttgcaa aaatcttgaa acacgcttac
      721 agcattaact tctgtggcta tagctttcaa atcttttcca tttttatcgc gatactcttc
      781 aagcaaaaga cttaaaataa aatgccaaat atcgacaatc tctatacgca cattttccca
      841 atttgtcgga tttgaaatgt ttttccaatg tttccatgca aaagagtcta taagttctgc
      901 acattccata taaatacagc gtctccaact gatcagtttt ccttctttgg tgtagccatt
      961 ttcccaattt aagccgtttg tttcgtcgtt aagtttttgt tggagtttga gcatattttc
     1021 taaaatttcg atatttgtca tttaaaactc cttgataatt tttaatatta tatgatttaa
     1081 gcgtaaagat ttaaactatc atctgtctta tcttgatttt ccttggcttt ttcttgttgt
     1141 ttttcaagtt gttttttcat ttgttctaaa acttcatcaa gaagtttttt gctatcttca
     1201 agcatagaag tattgatatc tttatcattt gtttgatttt gttttagcaa atcactgagt
     1261 ttatttgtaa aattattcat aatagcattt tgatggtttt tatcatttgg agttggtaga
     1321 acatttgcca tttgcatagc tgattcgata atttcctttg gctttaactc tccaacttta
     1381 gaatttgcta aaaaatcttt gatcataggt tcaacttctt tcatagcatt tttaatctca
     1441 tcaagatcat tttgtgtgag tttagagcct tcaaaagtaa agctaaaacc atactgacgc
     1501 ttaagattaa gagttttacc ttcttcatta tttgcataac ttatgctttg attgtcatac
     1561 atagataagg ctaagtgttt gccacttttt gttgtataat ccatcgaaaa actttggttt
     1621 ttactagcat caatttgcat ttcttcccct tatatttata gtttaaatca aaaatcggct
     1681 atttttaaaa atattttagt ataattttta taatatggat gaaagaattt tagaatttat
     1741 aaaaaatgag cagcttttat cttgggctat gattgatgaa aaaggtgttt atacggctag
     1801 tgctttttat gcttttgatg aaaagaattt agcttttatt atcgcttctc atgaagacac
     1861 taagcatata agattggcca gtgaaaattc aagtatagca cttaatatag ctaaagaaaa
     1921 taaaatagct tttttaaaag gtgtgcaagc taaggccgag tttaaaatcg caaacaagga
     1981 acaaatgaaa atttattttt ctaaatttcc ctttgctaag cttgataaaa gtgcaaaaat
     2041 ttatgcttta gagctttttt ggcttaaatt tactaacaat gctttaggac ttagtaaaaa
     2101 gcttgaattt tgtaaaaaat aaatttttat gattttattt aaaaaaatga gttatgatta
     2161 tagtttatgt aaattgttag gtatagaaaa taaatgttaa atgtaattca cgctttattt
     2221 tttagggagt taaaaactag atttggaaaa aataggtatc ttggatatat atgggtagtt
     2281 ggagagccta tgagcgttgt gcttttggtg actattatag gaactgtcat tagggaatat
     2341 catcatcaag ttatgcctga aggaatttct atttttatgt ttttaatttc aggtattatg
     2401 ccttttttta tgtttagaag tatagttact caacttatga atggaatagg ggcaaattta
     2461 tctttgtttg cctataaacc tgtaaaacct atacatgtat ttattgctag aactttgctt
     2521 gaattttgta tttattttgt gatttttatc accgtgcttt tttttgcagg gtggttcttt
     2581 agactcgatg tatttcctgt tcatttactt ggagttttat tttgtatttt tttacttata
     2641 tgctcagctt ttgctttagg gatttgtttt gctattgttt ggcactttgt agaatcttta
     2701 agaactttat tagcttattt tagtatagta ttttattgga gttctgggat tatatttcct
     2761 acctggttaa ctcctcgtcc tttacttgat atattttatt acaatccttt gcttcatatt
     2821 tttgaacttt taagatttaa tttttttgag aattatcctt tgcaagatga atatagttat
     2881 ttttatgcta tattttggat tttactagtt ttatttatag ggctttttat ttactactat
     2941 aatagacaag ctctaacggc ggcaaaaaaa gaatgataaa gctaattaat ctaactaaat
     3001 cttatccttt atttagtggc ggaaggcatt atgtttttaa aaattttact tttgaatttc
     3061 ctgaaaattg tagtatagga ttgatggggg gtaatggcgc aggcaagtcc actctcatga
     3121 gactcttaag tggagcagag cttcctgata atggtaagat aattactaat aaaaaattat
     3181 cttggccttt gggtttaaat ggggcttttc aaggttcttt aaccgctaga gataatgcta
     3241 aatttgtagc tagagtgtat ggttataaag gcaaggaact tcaagaaaaa gtaaaattcg
     3301 tagaagattt tgcagagctt gggaaatttt ttgatgagcc tatgaagact tattcttcgg
     3361 gaatgagtgc taggatagct tttggactta gcatggcttt tgattttgat tattatttga
     3421 tcgatgaagc gggagctgtt ggagatcctg cttttaggga aaaaagcgtg aaattatata
     3481 gagaaagatt aagcaaatca aaagtgatta tggtatctca taatgtagct gaaattaaag
     3541 aatggtgtga taaaataatt tatatgaaaa atggacaaat tacggtttat gatgatgtag
     3601 atgaaggaat agctgtgtat caaggaaagg cttaatggaa gaaaataaaa ctttactgga
     3661 aaaaatcaaa gatttaagta tatttgattc ttttaaaatt gtttggttta taatgattct
     3721 tgttgtgatt tattatacat tgattgcagc accaagatat gtaagcacga tgattttaga
     3781 tgttagatca acaagtggag aaagtgctca aacaagtgga atcttgtctt tgcttagtag
     3841 tacttctaca gcaagcgaag atttaaacta tctaaaaggt tatatagaat caagtgatat
     3901 gttaaagatt ttggatgaaa aaatcaaact taaaagtctt tatcaagaac aatatataga
     3961 tttgcctttt aaaatttggg attcaagctc gatagaatct tatcttaaat actaccaagc
     4021 aagagttaag gttcatacgg atgaaaccac taagctttta caggtagaag tagaaggttt
     4081 tacacctaaa tcagctcatt tgattgctca aactattatg caagaaagcg aaaaatttat
     4141 caatgaaatc tctcataaag cagctagaga acaaatggct tttgctgaaa atgaagtaca
     4201 aaaatacaaa gaacgatatc aaaaagcaca aaatgatttg attgcttttc aaaataaata
     4261 tggggttttt gatcccttga aacaagctga agctaaagca agtttggttg cgcaaattga
     4321 gactaattta gctcaaaaag aagctaaact tttaacttta caaagctata tgaatgatgc
     4381 agcacctgaa gtagtagcac ttaaagcaga aattgaagcg attaaaaaac agcttttaag
     4441 ggaaaaatct aaaatttcag ctaacaattc ttctcaaaag cttaatgatt tggctgctaa
     4501 atttcaagat ctaactatag aagctacttt tgcgcaaaaa gcttatgaag cagctttaaa
     4561 agcttatgaa agtgctagaa tagaagcatt aagaaaaata aaacaacttg tcatcattca
     4621 aagtccagat attccagaaa gcgcaaaata tcctgaaaga atttatgata ttttaacagc
     4681 atttattgta ttatctttga tttttgggat tgttaaattt attaaaatga taatagagga
     4741 gcataagtat taaaatgaaa aaaatattaa ttttactttt tagttgtatt ttatgttttg
     4801 gagctgtgga tgtttcacaa atcatttcag cagaggatca aggttctact acaactagca
     4861 tagatcaaaa tttaagctca aattatgata tagcaaataa agaaaataat cttacaaaaa
     4921 ttcatcaaat tttagtattc ggtgctcatc tttttaatgg aaattttaaa aattacaatc
     4981 aaagagttta taacccagat tataagatcg cagttggtga tcaaatcagt cttaaaattt
     5041 ggggagctgt tgagttttcg caagttttag tggtggattc tcaaggaaat atttttatcc
     5101 ctaaagtagg agctgtaaat ttactaggtg tgaaaaatag cgcccttgta agtgttataa
     5161 aagcacgtgt taataaaatc tataaaagca atgtttttgt ttatgcagat atgaatgctt
     5221 atcaaaatgt cagtgttttt gtaacaggaa gtgttaatgc tccaggactt tatcaaggac
     5281 ttagttcgga ttcagtgata cagtatcttg ataaagcagg gggtataaat ttagaatatg
     5341 gaagttttag agatattcaa attttgcgta ataacagcgt gataaaaaat attgatttat
     5401 atgatttttt actaaaaggg caaatggatc tttttccttt tagaagcgga gatgttattt
     5461 tagtaggaaa tgttcaaaat tacgcttttg ttgatggtga tgtgcaaaga ccttttcgtt
     5521 ttgaactttc aaatgatatt aaaactttag ctgacttagc tagagtatca ggtgctaaac
     5581 ctatcgtgac taatgctatc gtaaaaagtt atggtgaaga tcataaactt gatgtcagtg
     5641 cttataataa aatgcaattt tcaaaagttt tacttagaac gggagatgag gtagaatttc
     5701 accctgagta tgtttctaaa aatataacta taagtgtaaa tggcgagcat aatggtttaa
     5761 aaactttagt tgtgggtaaa ggaacgactt tagaagatat ttctaaatta attaaagcta
     5821 atccacaatc aaacatgcaa gctttacaag tgtttagaaa aagtgtagct agaactcaaa
     5881 aagaacttat caatgctcag cttaaagagc ttgaaactct agctttaact agtggttctg
     5941 ttacagctca aggtgcagct ataagagctc aacaagcaaa aacgatttta gaatttatcc
     6001 aaagagctaa gcaagtagag cctaagggtc aaattgtcat tgataatcca aagtcttata
     6061 attcggttat tttagaagat ggtgatacta ttaatgtacc aagtaagaat aatctcatca
     6121 tagttcaagg tgaggtttct ttacctggag cttttgtgta tgataagggc aaagatttaa
     6181 gatattatat caatcttgca ggaggttatg gagaaagagc ggatacttca aaagttttgg
     6241 tgatacgaag caatggaaaa gctgaaaaat atcatagtgg tatagatatg aaaccaggcg
     6301 attctgtgtt ggtattgcca aaagtagata gtgagaattt gcaaattttt tcaatgttaa
     6361 ctcaaattct ttatcaaatt gctattgcaa ccaatgttgt gcttaatctt taaggtttaa
     6421 aaatgaatac tcttgaaata gccaaagaag tctttgaaaa agaagcgcaa gctattttgg
     6481 atttggctaa aaatttagat gaaaatttta atcaagctgt gaatttgatg ctaaatacca
     6541 aagggcgttg catagtcagt ggaatgggta aatcgggtca tataggtgct aagatagcag
     6601 ctactttagc aagtacagga acgccaagct ttttcatcca tccaggagag gctttgcatg
     6661 gagatcttgg aatgctaact cctgaagatg ttttaattgc tatttcaaat tcaggggaaa
     6721 ctgaagaaat tttaaaaatc attccagcta taaaaaagcg taaaattcca cttatagtaa
     6781 tgtgtggtaa aaaaaattcc acccttgtaa agcaaagcga tatattttta aatatagctg
     6841 tggaaaagga agcttgtcct ttgcagcttg ctcctatgtc ttcgacaacc gcaactttgg
     6901 ttatggggga tgctttagct gctgctttga tgaaggtaag aaatttcaag cctgatgatt
     6961 ttgccctttt tcatccaggg gggagtttgg ggcgtaagct tttaaccaag gtaaaagatc
     7021 ttatggtttc aagtaacctt cctatagtgc atcctgatac tgaatttaac gatcttgttg
     7081 atgtgatgac tagtggaaag ctagggcttt gtgtggtact tgagaatgaa aaattagtgg
     7141 gtatcatcac tgatggggat ttgcgtcgtg ctttaaagac aagcgataaa ccaagatttg
     7201 attttagagc caaagaaatc atgagtacaa atcctaaagt agtcgatgct gatgctatgg
     7261 caagtgaagc agaagagatc atgctaaaac ataaaatcaa agaaattgtt gtatctaaag
     7321 aagataaggt tgtaggcatt attcaacttt atgcaatagg aaatgtgtga aagttatgcc
     7381 tttgttatca gttgttattc cttttggatt aagcaaggaa cgttcttata tagaagaaag
     7441 ggttcttcaa aaagctaaat tttttcaaag tgatgagaat atggagttta ttttcgttga
     7501 aggatattca tctttgaaaa acaatttaaa acaaatcata gaaaatagtg gtcatattta
     7561 tttaaaagat gacgaccaaa aagattattt ttcccaagga aaatgtagaa atttgggcgc
     7621 tgtttatgca aattctaaag ttataatgtt tttagatgtt gattgttata ttagtttatt
     7681 atctttagaa aaaattttaa atcttattaa agttaaaaat attgctcaaa atatcaatga
     7741 attattggtt ttacctgtag tgtatttaag tcaaagtggt agtgagaaaa tttataaaga
     7801 ggataaatac ttatgggatg aaattatcaa acatgattta atcaccggaa aaagaaaatt
     7861 gattaaatat ttttctctta tttcaagttc cattatcgta aatagatata aattcttagt
     7921 attagggggt aataatcata attttatagg tcatagttat gaggatcatg atttttttgc
     7981 aagattgctt ttttatacaa caaatttttc aaatactcca aaagcattgt gttatgatga
     8041 gggaacttgg aatataagaa aatttaaagg ttttagagct tggttctctt tacttgggta
     8101 tgaaatgagc tttcatggaa tttatatgta tcatttttat catgaagagc ctaatcaaaa
     8161 taattatatg tcttatagac ataaaaatca taaaatattt tataagaatt tggccaattt
     8221 aaaaaattat caaattaaac cattgcttga taaagatgct ttaaaaaata atattttatt
     8281 gctttgttct aaggaaaaat taatattaaa ttctttacat agtgctcttg tatatatagg
     8341 caatgtaata agtaaaaatg aaaactattt ttttgaagat gaaaaattta atcaagataa
     8401 attgttagat tttttaaagc aaaataacat aaacaagatt ttatttccaa atccttatgg
     8461 aaatgaaaaa agattaaaaa tatataaatt tgcaaaatca gaaaatattg attttgtatg
     8521 ttttgacaga ggagcattgc ctgatagttg gttttttgat accaatggtt ttaattatga
     8581 ttcaaattta tataatgaag aaaattggaa taaagtttta agtaaatctc aaattttaga
     8641 atgtaaagaa tatatcaata gtattataga tggaaataat tttttagaaa agcaaggaaa
     8701 aagaaatttt aactatttga aagataaatt ttttgttaac gataaaaaga tagtttttgt
     8761 tccgttgcaa gttgaaagcg atactgttat aaaatatttt acatataaac cttttgattg
     8821 gagtggtttt ttagatataa taaatgatat ggcttttaaa ttaagacaaa ctcatatttt
     8881 tttagtgaaa aagcatcctc ttagcttaaa aatagcgaaa tctaagtata agaatttaaa
     8941 ttttatttca aataagacaa atattatcga tgcaattagt ttgtgtgatg tggtggttac
     9001 gttgaattcg ggtgttgggc tttatgctat gataatgaat aagccttgta taaattgtgc
     9061 taatgcattt tataactttc aaggtttaaa ttttcaagct cataacagcg atgaactttt
     9121 gagatttttg gtttcagatt tgaaaattga ttataataaa gttttaaaat
//
LOCUS       DAZBIH010000055         8795 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.056, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000055 DAZBIH010000000
VERSION     DAZBIH010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8795)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8795)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8795
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.056"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..122)
                     /locus_tag="ACHFOB_001121"
     CDS             complement(<1..122)
                     /locus_tag="ACHFOB_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799930.1"
                     /translation="MEHKKALFCIFAIIHLFFWIIFSSLNHFKLDTFLSYEIAF"
     gene            complement(122..451)
                     /locus_tag="ACHFOB_001122"
     CDS             complement(122..451)
                     /locus_tag="ACHFOB_001122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AtpZ/AtpI family protein"
                     /protein_id="HFN5799931.1"
                     /translation="MSNILKEEKNHLENSNSKRQKIIRKTLEAADGLSLGISMVVAVF
                     IGVGIGYLLKKFTPYPWLFWLGVFWGISAAILNVYKAYKVQVKSYEEFKERDELIKEK
                     IQKEKNK"
     gene            complement(448..1722)
                     /gene="hemL"
                     /locus_tag="ACHFOB_001123"
     CDS             complement(448..1722)
                     /gene="hemL"
                     /locus_tag="ACHFOB_001123"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HFN5799932.1"
                     /translation="MTNKKAFKEACKFIAGGVNSPVRAFANVQSEPKFISHGKGAYIF
                     DIDGNSYIDYVQSWGPLLFGHCDKDIQKACQKALHKGSSFGAPTLLETELAKLVLSDF
                     PHLEKIRFVSSGTEATMSAIRLARGFTKKDKILKFEGCYHGHSDSLLVSAGSGAATFN
                     SPSSLGVLEDVAKHTLVAKYNDINSVKELFEKNKDIACVIIEPIAGNMGLVPAKQDFL
                     EELAKICKNNQTLLIFDEVMSGYRASYLGSYGINHIQADIITFGKVIGGGLPAAAFAS
                     RAEIMDILSPLGGVYQAGTLSGNPLAMAAGIASLTKAKKKTKLYNKLGKLAKKLTQGM
                     KKLADEKGLPLQACHVGSMFGYFFTKDPVSNYQDALKSDLALFSKFHKNMLENGIYLA
                     PSQFETGFICSKMDDKIIDTTLEAVRESFKRI"
     gene            complement(1719..2066)
                     /locus_tag="ACHFOB_001124"
     CDS             complement(1719..2066)
                     /locus_tag="ACHFOB_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c"
                     /protein_id="HFN5799933.1"
                     /translation="MKIVLMFFLFSISLFGADFITLKEYSKMLYENPRGISCKECHGA
                     DGSEQILGYYMKNGIKTAYKVPSIQNLSFENFKNSLNQSKDAKSIMPNYSLTNDEIVT
                     LYNYIKQFSKEEK"
     gene            2146..2994
                     /gene="folD"
                     /locus_tag="ACHFOB_001125"
     CDS             2146..2994
                     /gene="folD"
                     /locus_tag="ACHFOB_001125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HFN5799934.1"
                     /translation="MTLLDGKALSAKIKEELKEKNQFLKSKGIESCLAVILVGDNPAS
                     QTYVKSKAKACEECGIKSLVYHLNENTTQNELLALINTLNHDDSVHGILVQLPLPDHI
                     CKDLILESIISSKDVDGFHPINVGYLNLGLESGFLPCTPLGVMKLLKAYEIDLEGKDA
                     VIIGASNIVGRPMATMLLNAGATVSVCHIKTKDLSLYTRQADLIIVAAGCVNLLRSDM
                     VKEGVIVVDVGINRLESGKIVGDVDFEEVSKKSSYITPVPGGVGPMTIAMLLENTVKS
                     AKNRLN"
     gene            3004..3852
                     /gene="lepB"
                     /locus_tag="ACHFOB_001126"
     CDS             3004..3852
                     /gene="lepB"
                     /locus_tag="ACHFOB_001126"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase I"
                     /protein_id="HFN5799935.1"
                     /translation="MEILKKLYKFSQSWTGTVVIVLLVIFFFIQAFVIPSGSMKNTLL
                     VGDFLFVKKFSYGIPTPHIPWLEIPVLPDFNKDGHLIKAQGPQRGDIVVFRNPRNEKE
                     HFVKRCVGTGGDRIVYANKTLYVRMHEGDEFMKEHYPNDLVTLGGQIYVKEPYKQKGI
                     HYDPKKDIESDILRFLSIGDFAMSPAYIKELGNHIGFSGGNAYVFDVPENEYFMMGDN
                     RDYSYDSRFWGSVPYRLIVGKPWFVYFSWDKDKNVRWERIGRFVDTLENDEQYIHDHD
                     DEDKLS"
     gene            complement(3874..5034)
                     /gene="moeA"
                     /locus_tag="ACHFOB_001127"
     CDS             complement(3874..5034)
                     /gene="moeA"
                     /locus_tag="ACHFOB_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HFN5799936.1"
                     /translation="MKNIFETLKDLENQISCLDESELISLEKAKDRILAKDLYARKNL
                     PSFDNAALDGYAFNYTDINEALEIKGTIFAGDKNFYTVAKNECYKIMTGAKMPKNADT
                     ILMLEDECIEENKLIIKKVPKQYNAYRYKGEELKKGEILLQKGTKLNDKHIALLASQG
                     LYKIEVIRKIRIGIFSSGNELKEPWQECDEESIYNANALPLLTMLQNASYLGIIKDEF
                     KSTKEALENTNFDLLITSGGASVGEADFMEKALDELGFTPLFKGLKARPARPTKLYRK
                     GENFVLILPGNPMAAYLSCFIFAKKIINLLSGNLDNPLTFYGKMGMDLKLKSGRNNLI
                     LGNLEKGIFTPFNENKFGSGMILPLIKSEFLLISEENTGELKKGDEITLLKI"
     gene            complement(5031..6287)
                     /gene="murA"
                     /locus_tag="ACHFOB_001128"
     CDS             complement(5031..6287)
                     /gene="murA"
                     /locus_tag="ACHFOB_001128"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008760 - UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase activity [Evidence IEA];
                     GO_process: GO:0019277 - UDP-N-acetylgalactosamine
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HFN5799937.1"
                     /translation="MTYLEIEGTNHLSGNVTISGAKNAALPLIVSSILAKNEVKINNV
                     PNVADIKTLISLLENLGAKVNFQNNSALLNTNTLNQTIAKYDIVRKMRASILTLGPLL
                     ARFGHCEVSLPGGCAIGQRPIDLHLLALEKMGANIQIKQGYVVASGNLKGNEILFDKI
                     TVTGSENIIMAAALAKGKTKLLNVAKEPEVVQLCEVLKDAGLEIKGIGTDELEIYGSD
                     GELLEFKEFSVIPDRIEAGTYLCAGAITNSKITLDKVNATHLSAVLAKLHQMGFETLI
                     TEDSITLLPAKEIKPVEIMTSEYPGFPTDMQAQFMALALKANGTSIIDERLFENRFMH
                     VSELLRMGADIKLNGHIATIVGGKELNAADVMATDLRASSALILAALAAKGTSKVHRI
                     YHLDRGYENLEEKFKDLGAKITRLEE"
     gene            complement(6353..6781)
                     /gene="fspA1"
                     /locus_tag="ACHFOB_001129"
     CDS             complement(6353..6781)
                     /gene="fspA1"
                     /locus_tag="ACHFOB_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellum-secreted nonflagellar protein FspA1"
                     /protein_id="HFN5799938.1"
                     /translation="MQINNSLNSLSQYVKVNSNEENQNSKNQEQNALAQDPAVEVNIS
                     KEAKEKSNTSNQNNSQAPAQALNAQNNTQQDSSSNSEDKLTELTQKLAEIQAKIVELT
                     AKMSKANEDQIKSIESQIATLNAQASTIQAQIQELQSQQA"
     gene            6876..7748
                     /locus_tag="ACHFOB_001130"
     CDS             6876..7748
                     /locus_tag="ACHFOB_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HFN5799939.1"
                     /translation="MGVFLVLLGGIFWAISGVLAEYLFKNNYSVDWICFYRLLSTGLI
                     LIFLSFKAQKILVFTNLKESLSICMFGFFGLLLTQFGYFKAIYYTDAGTATMIQYCAP
                     LIIMLYLCFKNKKFPKLIEIFALILIIFALFLLATKGDIEAVVLNYWGIFWAVIGAFG
                     VAFYSLSAREVILKYGLFWIMGWASLFASFVFLLILQFDKGLIHYAFNLKAFFSMGGI
                     VFIGTIGAFCLYLKGVEYIGALRASMIASIEPVAAALMSFLFLKTRYSLLDIFAFVLI
                     ILSVILNAKKTKVS"
     gene            complement(7735..8301)
                     /gene="pabA"
                     /locus_tag="ACHFOB_001131"
     CDS             complement(7735..8301)
                     /gene="pabA"
                     /locus_tag="ACHFOB_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HFN5799940.1"
                     /translation="MKKILFIDNYDSFSYTIIYYLKELGFECKVIKNDAFKKAKELEK
                     FDFTHLIISPGPHSPKESKLSLKAIKYFKKNKKILGICLGHQCIAEIFGGKVSKMQNP
                     MHGKISKLYFKKDPIFKGIKQEIEICLYHSLHISSMPEKCKILAHNSENIIMAIKHKK
                     YPIYGLQFHPEAVLTQKGKKILKNFMKL"
     gene            complement(8298..>8795)
                     /locus_tag="ACHFOB_001132"
     CDS             complement(8298..>8795)
                     /locus_tag="ACHFOB_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class IV"
                     /protein_id="HFN5799941.1"
                     /translation="KHSLFYNFPLPFKNPHKEGILKLILYKDGRYEFQQSALKQNSND
                     ILLLSDDKINSKSDNLYHKSSLRTFYNQHSYKWQQNLCYDIAFFNEKDELCEGSRTNL
                     ILEKNAQFYTPQIQSGMLNGVYRNFLINLGLIKEKALFKQDLFEAENIYCINSVRGLK
                     KVKLQ"
BASE COUNT         2750 a         1307 c         1423 g         3315 t
ORIGIN      
        1 aaaaaagcta tttcatagct taaaaatgta tctaatttaa aatgatttaa cgatgaaaat
       61 atgatccaaa aaaataaatg aataatggca aaaatacaaa atagagcttt tttatgttcc
      121 attatttgtt cttttctttt tgaatttttt ctttgatcaa ctcatctctt tctttaaatt
      181 cttcatagct ttttacttga actttataag ctttataaac attaagtata gcagcactga
      241 tcccccaaaa aactccaagc caaaaaagcc aaggataagg agtaaatttt ttaagtaaat
      301 atcctattcc cacacctata aatacagcaa caaccataga gatgccaaga cttaaaccat
      361 ccgcagcttc aagagttttg cgaatgattt tttgtctttt gctgttggaa ttttctaagt
      421 gatttttttc ttcttttaaa atattgctca tattctttta aagctttccc taacagcctc
      481 taatgttgta tctataattt tatcatccat ttttgaacat ataaagcctg tttcaaattg
      541 agaaggtgct aaataaattc cattttcaag catatttttg tgaaattttg aaaataatgc
      601 tagatcagat tttaatgcat cttggtagtt tgatacagga tctttggtga aaaagtatcc
      661 aaacatagaa cctacatgac aagcttgcag cggaagtcct ttttcatctg ctaatttttt
      721 cattccttgt gtaagttttt ttgctaattt tccaagtttg ttataaagct tggttttctt
      781 tttggctttt gtaagacttg ctatacctgc agccattgcc aaaggatttc cacttaaagt
      841 tcctgcttga taaactccac ccaaaggact taaaatatcc ataatttcag ctctagaagc
      901 aaatgctgct gcaggtagac cgcctcctat taccttacca aaagtaatta tatctgcttg
      961 gatatgattg attccatagg aaccaaggta agatgctcta tatccactca ttacttcatc
     1021 aaaaatcagc agagtttgat tgtttttaca gatcttagca agttcttcta aaaaatcttg
     1081 tttagctgga actaacccca tatttccagc aataggctca atgataacac atgcaatatc
     1141 tttatttttt tcaaaaagct ctttaacgct atttatatca ttatatttag ctactaaagt
     1201 gtgtttagct acatcttcta aaacacccaa agaactagga gagttaaaag tagcagcacc
     1261 acttcctgca ctcactaata atgaatcaga atgcccgtga taacatcctt caaattttaa
     1321 aattttatct tttttagtaa aaccacgggc aagacgaata gcactcatgg ttgcttctgt
     1381 tccactgctt acaaagcgga tcttttctaa atgaggaaaa tcagataaaa caagcttggc
     1441 aagttcagtt tctaataaag ttggagctcc aaaacttgaa cctttatgaa gtgctttttg
     1501 acaagctttt tgtatatctt tatcgcaatg tccaaaaagc aaaggccccc agctttgaac
     1561 atagtctata taagaatttc catctatatc gaaaatataa gcaccttttc catgagaaat
     1621 aaattttggc tcactttgaa catttgcaaa agcacgaact ggagaattta caccacctgc
     1681 gatgaattta cacgcttctt taaaagcttt tttgtttgtc atttttcttc cttgctaaat
     1741 tgcttgatgt aattatataa agttacaatt tcatcatttg ttaaagagta atttggcatg
     1801 attgattttg cgtctttact ctgattaaga gaatttttaa aattttcaaa actaagattt
     1861 tgtatacttg gaactttata agctgtttta ataccatttt tcatataata tcctaaaatt
     1921 tgttcgcttc catctgctcc atgacattct ttacaactaa tgccccttgg attttcataa
     1981 agcattttag agtattcttt aagagtgata aaatcagcac caaaaagact aatactaaat
     2041 aaaaaaaaca ttaaaacaat tttcaaagtt tcaccttgtt aatgaagttt taatatgata
     2101 caatttttac tttaaaaaag tgattaaatt tatagaagga aaataatgac tttgcttgat
     2161 ggtaaagctt taagcgcaaa aatcaaagaa gaattaaaag aaaaaaatca atttttgaaa
     2221 agcaaaggga ttgaaagctg tttagctgtt atcttggttg gagataatcc tgcaagtcaa
     2281 acttatgtaa aatctaaggc taaagcctgt gaagaatgtg gaattaaatc tttagtttat
     2341 catcttaatg aaaatactac acaaaatgaa cttttggcat tgattaatac cttaaatcac
     2401 gatgatagtg ttcatggaat tttggttcag cttcccttac ctgatcatat ttgtaaagat
     2461 ttaatacttg aaagtattat aagtagtaaa gatgttgatg gctttcatcc tattaatgta
     2521 ggatatttaa atttaggctt agaaagtggg tttttgcctt gtactccact tggagttatg
     2581 aagcttttga aggcttatga aattgattta gaaggaaaag acgctgttat tataggtgct
     2641 tcaaatatag taggtcgtcc tatggctact atgcttttaa atgctggagc tacagtaagc
     2701 gtttgtcata ttaaaaccaa agatttgagc ctttatacta ggcaagctga tttgattata
     2761 gtagcagcag gttgtgtgaa tttacttcga tcggatatgg taaaagaagg agtgattgtt
     2821 gttgatgttg gaatcaatcg tcttgaaagt ggaaagatag ttggagatgt agattttgaa
     2881 gaggtatcta aaaaatctag ttatataact cctgttccag gtggagtagg tcctatgact
     2941 atagccatgc ttttagaaaa cacagttaaa tctgctaaaa atagacttaa ttagggaaaa
     3001 tctatggaaa ttttaaagaa attatataaa ttttcacagt cttggactgg aactgtagtt
     3061 attgttcttt tggtgatttt tttctttata caagcttttg ttattccttc tggttctatg
     3121 aaaaacacct tattagtagg ggatttttta tttgttaaaa aatttagcta tggtatccca
     3181 actcctcata ttccttggtt ggaaattcct gttttgccgg attttaataa agatgggcat
     3241 ttgataaaag cacaagggcc acaaagagga gatatagttg tttttagaaa tcctagaaat
     3301 gaaaaagaac actttgtaaa gcgttgtgta ggcacaggag gagataggat agtttatgca
     3361 aataaaacac tttatgtaag aatgcatgag ggtgatgaat ttatgaaaga acattatccg
     3421 aatgatcttg ttactcttgg agggcaaatt tatgtaaaag aaccttataa acaaaaaggt
     3481 attcattatg atccaaaaaa agatatagaa agcgatattt tacgctttct tagcataggt
     3541 gattttgcca tgtctccagc ttatattaaa gaacttggaa atcatatagg ttttagcggc
     3601 ggaaatgctt atgtttttga tgtacctgaa aatgagtatt tcatgatggg tgataatcgc
     3661 gattattctt atgatagtcg tttttggggt tctgttcctt ataggttgat agtaggtaaa
     3721 ccttggtttg tatatttctc ttgggataaa gataaaaatg ttcgctggga aaggataggg
     3781 cgttttgttg ataccttgga aaatgatgaa caatatatcc atgatcatga tgatgaggat
     3841 aaattaagct aatgtttgtg aaaaacacaa acattatatt tttaaaagcg tgatttcatc
     3901 accttttttt aattcacctg tattttcttc gcttataagc aaaaactcac ttttaataag
     3961 tggaagtatc ataccagagc caaatttgtt ttcgttaaat ggtgtaaaaa tacctttttc
     4021 taaatttcct aaaatgagat tatttcttcc gcttttaagc tttaaatcca tacccatttt
     4081 gccataaaat gttaaaggat tgtctaggtt tccacttaat aaattaatga tttttttagc
     4141 aaaaataaaa caagaaagat aagctgccat agggtttcct ggtaaaatca atacgaaatt
     4201 ttcacctttt ctataaagct tagtaggtct tgcagggcgt gcttttaaac ctttaaaaag
     4261 cggagtaaag cctaattcat ctaaagcttt ttccataaaa tcagcctcgc caacgcttgc
     4321 acctcctgaa gtgattaaaa gatcaaaatt tgtattttct aaagcctctt tagtgctttt
     4381 aaattcatct ttgataatac ccaaataaga agcattttga agcatagtta gtaaaggcaa
     4441 agcattggca ttataaatac tttcttcatc gcattcttgc caaggttctt ttagctcatt
     4501 tccacttgaa aaaataccta tgcgaatttt tcttatgact tctattttat aaagcccttg
     4561 agaagcaagc agggcgatat gtttatcatt aagtttggta cctttttgaa gtaaaatttc
     4621 accttttttt aattcttcac ctttataacg ataggcattg tattgtttag gaactttttt
     4681 aatgatgagt ttattttctt ctatacactc atcttctagc attaagatag tatcagcatt
     4741 tttgggcatt ttagcccctg tcatgatttt atagcattca tttttagcaa ctgtataaaa
     4801 atttttatct cctgcaaaaa tagtcccttt aatctccaaa gcctcattga tatcagtata
     4861 attaaaagca tagccatcaa gagcagcatt gtcaaaacta ggtagatttt ttctagcgta
     4921 taaatcttta gctaaaattc tatcctttgc tttttcaagg ctaataagct cactttcatc
     4981 taaacatgaa atttgatttt ctaagtcttt taaggtttca aagatatttt tcattcttca
     5041 agccttgtga ttttcgcacc caaatcttta aatttttctt ctaaattttc ataaccccta
     5101 tcaagatggt aaattctatg gactttgctt gtacctttag ctgcaagagc tgctaagata
     5161 agggctgaag aagcgcgcaa atctgtagcc atgacatcag cagcgttaag ttcttttccg
     5221 cctactatag tagcaatatg accattgagt ttaatatccg cacccattct taaaagttca
     5281 cttacatgca tgaaacgatt ttcaaatagt ctttcatcaa taatactagt tccattagct
     5341 tttaaagcta gtgccataaa ctgcgcttgc atatcggttg gaaagcctgg atattcactt
     5401 gtcatgattt ctacaggttt aatttcttta gcaggaagta gggtgatact atcttctgta
     5461 atcaaagttt caaaacccat ttgatgaagt tttgctaaaa ctgcactaag atgagtggcg
     5521 ttaactttat ctaaagtaat tttagaattt gtaatagccc ctgcacaaag ataagttcct
     5581 gcctcaattc tatcaggtat aacgctaaat tctttaaatt ctaaaagttc tccatcgcta
     5641 ccataaattt caagttcatc tgtacctatg cctttaattt caagtcctgc gtcttttaaa
     5701 acttcgcaaa gttgaactac ttcgggttct tttgcaacat ttaagagttt ggttttacct
     5761 ttagctagag ctgctgccat gatgatgttt tcactacctg taaccgtgat tttatcaaaa
     5821 agaatttcat tgccttttaa atttccacta gctacgacat agccttgttt gatttgtata
     5881 tttgccccca ttttttctaa ggctaaaaga tgtaaatcaa taggtctttg tcctatggca
     5941 catccaccag gcaaagatac ttcacaatgc ccaaaacgag caagcaaagg ccctagagta
     6001 agtatagaag cacgcatttt acgcacaatg tcatatttag ctatggtttg attaagagtg
     6061 tttgtgttta ataaagcact attgttttga aaattgactt tagctcctaa attttctagc
     6121 aaagatataa gagtttttat atcagcaaca ttaggaacat tgttgatttt tacttcattt
     6181 ttagcaagta tacttgaaac gatcaagggt agggcagcat tttttgctcc gcttattgta
     6241 acatttccgc ttagatgatt tgtgccttcg atttctagat aagtcatatt tttccttgaa
     6301 aaagtttaaa aatgcatcat tatagcattc ttaaactttt gaaaaaatat aatcaagctt
     6361 gttggctttg gagttcttga atttgagctt gaatagttga agcttgggca tttaatgttg
     6421 ctatttgact ttcaatactt ttgatttgat cctcattagc tttagacatt ttcgcagtta
     6481 gttcaacaat ttttgcttga atttctgcaa gcttttgtgt taattctgta agtttatctt
     6541 cactattgct gctactatct tgttgcgtgt tgttttgtgc gtttaaagct tgagctggag
     6601 cttgagaatt gttttgatta gaagtatttg atttttcttt ggcttctttg ctgatattta
     6661 cctctacagc tggatcttgc gctaaagcgt tttgttcttg atttttagag ttttgatttt
     6721 cttcgtttga gttgacttta acatattgac ttaagctatt taaggaattg ttaatttgca
     6781 tattttctcc ttaatttata atatatatta cactaaatcg acattatttt aaaaaaatat
     6841 actataattt aaaataattt ttattaaggt ttgcaatggg cgtattttta gttcttttgg
     6901 gaggtatttt ttgggctatt agcggtgttt tagctgaata cctttttaaa aataattata
     6961 gcgtagattg gatttgtttt tataggcttt tatctacagg gttgattttg atttttttaa
     7021 gttttaaagc tcaaaagatt ttagttttta caaatttaaa agaaagctta agtatttgta
     7081 tgtttggatt ttttgggctt ttgctaacac aatttggtta ttttaaggct atttattata
     7141 ccgatgctgg aactgcaaca atgatacaat attgtgcacc tttgattata atgctttatt
     7201 tgtgctttaa aaataaaaaa tttcctaaat tgatagaaat ttttgctttg attttgatta
     7261 tttttgcttt gtttttgctt gcaactaaag gagatattga agcggtggtt ttaaattatt
     7321 ggggtatttt ttgggctgtt ataggagctt ttggagttgc tttttattct ttaagtgcta
     7381 gagaagtgat attaaaatat ggtctttttt ggataatggg ttgggcgagt ctttttgctt
     7441 cttttgtatt tttattaatc ttgcaatttg ataagggttt aattcactat gcttttaact
     7501 taaaagcatt tttttctatg ggtgggattg tctttatcgg aactataggg gctttttgtt
     7561 tgtatttaaa aggagtggaa tatataggtg ctctaagggc tagtatgatt gcctctatag
     7621 agcctgtagc agctgctttg atgagttttt tatttttaaa aacccgttat agcttgcttg
     7681 atatttttgc ttttgttttg attatattga gtgttatttt aaatgcaaaa aagactaaag
     7741 tttcataaag tttttaagta tttttttgcc tttttgagtt aaaaccgctt cggggtgaaa
     7801 ttgcaatcca taaataggat attttttatg tttaattgcc ataataatat tttctgaatt
     7861 atgagctaaa attttgcatt tttcaggcat ggagctaatg tgcaaagaat gatataagca
     7921 aatttcaatt tcttgtttaa tacccttaaa aataggatct tttttaaaat aaagtttaga
     7981 aattttacca tgcatgggat tttgcatttt agaaacctta ccgccaaaaa tttcagctat
     8041 acactgatgt cctaaacata tgcctaaaat ttttttattt tttttaaaat atttgattgc
     8101 ttttaagctt aatttagatt ccttaggaga atgaggacca ggagaaatga taagatgagt
     8161 aaaatcaaat ttttctaatt ctttggcttt tttaaaggca tcgtttttta tcactttaca
     8221 ttcaaaacca agttctttaa gataatagat gatggtgtaa ctaaaagaat cataattatc
     8281 tataaataaa attttcttca ttgtaatttt acctttttta aaccacgcac ggaattaatg
     8341 caataaatat tttctgcttc aaataaatct tgtttaaata atgctttttc ttttatcaag
     8401 ccaagattga ttaagaaatt tctatatacg ccatttaaca taccgctttg aatttgtgga
     8461 gtataaaatt gagcgttttt ttctaagatg agattggttc ttgagccttc gcaaagttca
     8521 tctttttcgt taaaaaaagc tatgtcataa cacaagtttt gctgccattt gtatgagtgt
     8581 tgattataaa aagtacgtaa agagcttttg tgatagagat tgtcactttt tgagttaatt
     8641 ttatcatcac ttaaaagcaa aatatcgttt gaattttgtt ttaaggcact ttgttgaaat
     8701 tcgtatcttc cgtctttgta taaaataagc tttaaaattc cttctttatg tggattttta
     8761 aagggtaggg gaaaattata aaataaagag tgttt
//
LOCUS       DAZBIH010000056         8775 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.057, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000056 DAZBIH010000000
VERSION     DAZBIH010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8775)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8775)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8775
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.057"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..361
                     /locus_tag="ACHFOB_001133"
     CDS             <1..361
                     /locus_tag="ACHFOB_001133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5799942.1"
                     /translation="SIFQSEKFALLRLKIEKLSNLKSDLYELETNLDTVIFDTFKEFK
                     MSEILNSLNINGAFFEFLNDKLKHYEKNQKSKLESLEKVLQSLKNQDANILNSFEENL
                     EKIEKLKQLEMGLLNAD"
     gene            351..2180
                     /locus_tag="ACHFOB_001134"
     CDS             351..2180
                     /locus_tag="ACHFOB_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HFN5799943.1"
                     /translation="MQINLLNDFIKAYENTYSVSFDDSFKGRIQELCKELNEPFMHAS
                     YALENELKELVFSLDKNVNIAIIGQFSSGKSSLLNLILGRDCLPTGVVPVTFKPTFLR
                     YAKEYFLRVEFEDGSDIITNIEKLAFYTDQRNEVKQAKSLHIFAPIPLLEKITLVDTP
                     GLNANENDTLTTLDELKNIHGAIWLSLIDNAGKKSEEDAIKANLELLGENSICVLNQK
                     DKLSAEELDNVLNYAKSVFLKYFNELIAISCKEAKDEQSYEKSNFQSLLDFLTQLDTT
                     VLKEKFVKRKILNLCEILEDENQLFVGIFDRLLNQFQSYEKHLLLAYENFLKEIEILN
                     HQILEQLKSISERISSEIFASVKEKDAYFYKESKGFLKKDLYTRYDYKAPYISSDDAF
                     LAMFYNSDVMSKEFKKIKNELYKSFEEIKMKLKDFINILEREILLFKAEFSNIQKDHI
                     FQSDKNFSELRAFCNASDEYFLKDFKELLFKSILELDLFFEKLNLKAFTNYENATKLS
                     LAFFSRKINESRVLYELDSSEFVLFYPKKSEIYERVLNELNVYEFETLLINKPILTKI
                     AKNFLEQSQNLIQEKNKFLDLKKAELQKRRAQILNVRESIKED"
     gene            2180..2884
                     /locus_tag="ACHFOB_001135"
     CDS             2180..2884
                     /locus_tag="ACHFOB_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN5799944.1"
                     /translation="MRIFLTLFLFFNSLFALSELEEGLKLYEANKFDKAYEIFKSLCE
                     KDISKACFSLAFMHESARGVSKDLNQAYKFYDKACKLGLANACSNMALLLQNQGYENE
                     ALLAFNKACTLGESLSCNNIALFYEKEKDGQMASSFYKRSCDLKNARACYQLGSLYDK
                     GELVKASVKSALAFYSKSCTLGFGEACYLLGRYNQLEKQDLTKAKRYFGMACDQKHQE
                     ACAAYKELNSKDIELY"
     gene            3020..3748
                     /locus_tag="ACHFOB_001136"
     CDS             3020..3748
                     /locus_tag="ACHFOB_001136"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconate 2-dehydrogenase subunit 3 family
                     protein"
                     /protein_id="HFN5799945.1"
                     /translation="MQDNIIDRRSFFKLGLLGGSVVAASTIGGGAVLKAAELTHSHQA
                     SQGKSNKIRGRMFFQTQTEFDTLSAACERIYPKDEQGEGAIGLGVPYFIDNQLASAYG
                     YNDREYMQGPFMEGKAEQGYQTPMQRKDIFLEGVHALEENAQKRYKKSFSLLKGGDQD
                     KILSDFEKGKIQTTGFKSSYFFTLLRDMTVAGVLADPIYGGNDNKNGWRMMQYPGAQM
                     SYVDKIASDEFFNIEPMGLADMES"
     gene            3750..5471
                     /locus_tag="ACHFOB_001137"
     CDS             3750..5471
                     /locus_tag="ACHFOB_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GMC family oxidoreductase"
                     /protein_id="HFN5799946.1"
                     /translation="MAEVLKKVDVVTVGAGWTGGIVAAELTKAGLNVLSLERGHMQST
                     ENFNYIHDEWRYGINYGLMQDCSKDTVTFRHDPSGLALPYRKMGSFLLGNNVGGAGVH
                     WNGWTFRFMPYDFEIQTLSKQRYGNKLGNDYTLQDWGVTYKDMEPYYDRFEKTCGVSG
                     EPNPLAEKMGAFRSSPYPQEPLENTKMLKRFESAAKSSNLHTYRLPASNSKGGYTNPD
                     GQDLAPCQYCAYCERFGCEYGAKASPLNTVIPKAMSTGKYTIRTYSNVTQILKKDGKV
                     TGVKFVDTRTMKEYIQPADIVVLTSYMFNNAKLLMVSSIGEQYDPKTGKGTLGRNYCY
                     QMNMGTTAFFDEQFNTFMGSGALGTTSDDFNGDNFDHSKEKFLHGAMIYSVQLGTRPI
                     QSAPLPAGAPTWGAEFKKALNYNFTRAITVGGQGASLPHKNNYLSLDPTYKDAFGMPL
                     LRLTYNFTDQDRALHKFITDKTAEVAKRMQGVKSIKKGAYLKDYSVVPYQSTHNTGGT
                     TMGADRETSVVNTYLQHWDADNLFVVGAGNFQHNSGYNPTDTVGALAYRCAEGILKYH
                     KSGKSLA"
     gene            5642..5728
                     /locus_tag="ACHFOB_001138"
                     /pseudo
     CDS             5642..5728
                     /locus_tag="ACHFOB_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343582.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5760..5951
                     /locus_tag="ACHFOB_001139"
     CDS             5760..5951
                     /locus_tag="ACHFOB_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799947.1"
                     /translation="MLNILHANSSHRFHKCMPKEVHQIYDTLKLMEQQEGTKKVEAKK
                     EEQSNSTNTDKVDNKKINF"
     gene            complement(6030..6755)
                     /locus_tag="ACHFOB_001140"
     CDS             complement(6030..6755)
                     /locus_tag="ACHFOB_001140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative metalloprotease CJM1_0395 family
                     protein"
                     /protein_id="HFN5799948.1"
                     /translation="MQISSSYNSYDYYSSKPSFDKTNQSDSTQKDEKNLSENKDDKEK
                     NGEQTQMVNGVELSQKEVAQVRELQSIDRNVKAHEAAHQAAGGGLAGAASFTYTRGPD
                     NQMYATAGEVPISMQKGNTPEETIANARQIAAAAMAPADPSPQDYKVAANATKMEFEA
                     RAEAMKLKAEEAKEKEEENKEKDEENKEKDDKNSENSLEKTDKDSKNNDKNSNFDKDF
                     KNLVTRTYQQNSQNNDIKFSIAS"
     gene            6862..7224
                     /locus_tag="ACHFOB_001141"
     CDS             6862..7224
                     /locus_tag="ACHFOB_001141"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HFN5799949.1"
                     /translation="MIYENDLIYIEKEEAQVPWLKIFTKEIYKEFSDCPLELQKELFE
                     KILLCEKAMIEFYKPEKINIASFANYVPRVHFHVMARFKEDAFFPECMWGKQQREAIK
                     LDLPKFEEFVKFLNSKIF"
     gene            7298..7870
                     /locus_tag="ACHFOB_001142"
     CDS             7298..7870
                     /locus_tag="ACHFOB_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YceI family protein"
                     /protein_id="HFN5799950.1"
                     /translation="MKKVLLSSLVAVSLLSTGLFAKEYTLDKAHTDVGFKIKHLQISN
                     VKGNFKDYSAVIDFDPASAEFKKLDATIKIASVNTENQTRDNHLQQDDFFKAKKYPDM
                     TFTMKKYEKIDNEKGKMTGTLTIAGVSKDIVLDTEIGGVAKGKDGKEKIGFSLNGKIK
                     RSDFKFAASTSTITLSDDINLNIEVEANEK"
     gene            complement(7874..>8775)
                     /locus_tag="ACHFOB_001143"
     CDS             complement(7874..>8775)
                     /locus_tag="ACHFOB_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002933165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799951.1"
                     /translation="VLSFYFKNSRIFFLTLVLLGAKLPYFYASFFQANLFVALFLPMI
                     FTLFCLGKHHALILSKKNIASITTLIFIGVLSIILPRNTTFNSAGLEFHFIALDFFKP
                     VSELGFLFFLVGLILIFIKTFKTKEYYLIIAFFAAYFQFLFQEGAGIRYFEFASLVFC
                     FYLLNHAYKLAFFDILTKLPNEKSLTRFTKGKNNYIIALLHFNELKDTKESYAKLILK
                     QIAKILKRFRAKIFIVDNDFILIFNDKNQALNHLAFLESTLKNTEFNLENENFKPDFK
                     LIWQESEENLDKSLQSLRIKLLG"
BASE COUNT         3185 a         1071 c         1522 g         2997 t
ORIGIN      
        1 tagtattttt caaagcgaaa aatttgcact tttaagattg aaaattgaaa aattaagcaa
       61 tctaaaatca gatttatatg agcttgaaac gaatttagat acggttattt ttgatacttt
      121 taaagaattt aaaatgagcg aaattttaaa ctctttaaat atcaatggag cattttttga
      181 gtttttaaat gataaattaa aacattatga aaaaaatcaa aaatcaaaat tagaaagtct
      241 tgaaaaagtt ttacagagtc tgaaaaatca agatgctaat attttaaatt cttttgaaga
      301 aaatttagaa aaaattgaaa aattaaaaca acttgaaatg gggcttttaa atgcagatta
      361 atcttttaaa tgattttata aaagcctatg aaaatactta tagcgtgagt tttgatgata
      421 gttttaaagg gcgtattcaa gagctttgca aggaacttaa cgagcctttt atgcacgcaa
      481 gttatgcttt agaaaatgaa ttaaaagagc ttgtgttttc tttggataag aatgttaata
      541 tcgctattat agggcagttt tcaagtggta aatcaagttt gctaaatttg atcttagggc
      601 gtgattgttt gcctacgggt gttgttcctg ttacttttaa acctactttt ttacgctatg
      661 caaaagaata ttttttaaga gtagaatttg aagatggaag tgatattatc acaaatatag
      721 aaaaattagc cttttatacg gatcaaagaa atgaagtaaa acaagcaaaa agtttgcata
      781 tttttgcacc cattccttta cttgaaaaaa tcactcttgt agatactcca ggtttaaatg
      841 caaatgaaaa tgatacttta acaactcttg atgaacttaa aaatattcat ggggcgattt
      901 ggttaagttt aattgataat gcaggtaaaa aaagtgaaga agatgccata aaagcaaatt
      961 tagaactttt aggagaaaat agcatttgtg tattaaatca aaaagataaa ttaagcgcag
     1021 aagagctaga taatgtttta aattatgcaa aaagtgtgtt tttaaaatat tttaatgagc
     1081 ttattgctat ttcttgcaaa gaagctaaag atgagcaaag ctatgaaaaa tctaattttc
     1141 aatctttgct tgatttttta actcagctag atacaacagt tttaaaagaa aaatttgtta
     1201 aaagaaaaat tttaaattta tgcgaaattt tagaagatga aaaccaactt tttgtaggta
     1261 tttttgatcg tttattaaat caatttcaaa gttatgaaaa gcatttactt ttagcgtatg
     1321 aaaatttttt aaaagagatt gaaattttaa atcatcagat tttagaacag cttaaaagca
     1381 ttagcgaaag aatttctagt gaaatttttg caagtgttaa ggaaaaagat gcttattttt
     1441 ataaagaaag caaaggattt ttaaagaaag atttatacac aagatatgat tataaagcgc
     1501 cttatatttc aagcgacgat gcttttttgg cgatgtttta taatagtgat gtgatgagta
     1561 aagagtttaa aaaaatcaaa aatgaacttt ataaatcttt tgaagaaatc aagatgaaat
     1621 taaaagattt tataaacata cttgaaagag aaattttgct ttttaaagca gaattttcaa
     1681 acatacaaaa agatcacatt ttccaaagtg ataaaaattt tagtgaatta agagcttttt
     1741 gcaatgcaag tgatgagtac tttttgaaag attttaagga gcttttattt aaaagtattt
     1801 tagagcttga tttatttttt gaaaaattaa atcttaaggc ttttacaaat tatgaaaatg
     1861 ctacgaaact aagccttgca ttttttagtc gtaaaatcaa tgaaagtcgt gttctttatg
     1921 agcttgatag ttctgaattt gtactttttt atcctaaaaa aagtgaaatt tatgaaagag
     1981 ttttaaatga attaaatgtt tatgagtttg aaactttgct tattaataag cctattttga
     2041 caaaaattgc aaaaaatttt ttagaacaaa gtcaaaattt aatccaagaa aaaaataaat
     2101 ttttagatct taaaaaagca gagcttcaaa aaagaagagc acagatttta aatgttagag
     2161 aaagtataaa ggaagattaa tgagaatatt tttaacttta tttttatttt ttaattcatt
     2221 atttgcatta agtgaactag aagagggttt aaaactttac gaggcaaata aatttgataa
     2281 agcttatgaa atttttaaaa gtctttgtga aaaagatatt tctaaagctt gtttttcttt
     2341 agcttttatg catgaaagtg ctaggggtgt gagtaaggat ttaaatcaag cttataaatt
     2401 ttatgataaa gcttgtaaat tgggtttagc aaatgcgtgt tctaatatgg ctttgctttt
     2461 gcaaaatcaa ggttatgaaa atgaagctct tttggctttt aataaagctt gcactttagg
     2521 agaatcatta agttgtaata atatagcttt attttatgaa aaagaaaaag atggacaaat
     2581 ggcctcaagt ttttataaaa gatcttgtga tttaaaaaat gcaagagctt gttatcagtt
     2641 aggatcttta tatgataaag gagagcttgt taaagcaagt gtaaaatctg ctcttgcttt
     2701 ttattctaaa tcttgcactt taggttttgg tgaggcttgt tatttgctag gacgctataa
     2761 tcaactagaa aaacaagatc taacaaaggc aaaaagatat tttggtatgg cttgtgatca
     2821 aaaacatcaa gaagcttgtg cagcttataa agaacttaat tctaaagata tagagcttta
     2881 ttaaaagttc tattttcatt actttcaaag atatacttaa ataaaattaa gaataacaca
     2941 aaatttattg ctttttaaag ttaaatttat attaatagga ctaatatagt cttgcttaaa
     3001 ttattatcaa ggagaagtaa tgcaagacaa tattattgat cgcagaagct tttttaaact
     3061 agggcttcta ggtggttctg tagtagcagc tagcactata ggtggcggtg ctgttttaaa
     3121 ggcagcagaa cttacgcatt cgcatcaagc ttcacaagga aaatcaaata aaattagagg
     3181 tagaatgttt tttcaaactc aaactgaatt tgatacctta agtgcagcct gtgaaagaat
     3241 ttatcctaaa gatgagcaag gagaaggagc tataggttta ggcgtgcctt attttatcga
     3301 taatcagcta gctagtgctt atggttataa tgatagagaa tatatgcaag ggcctttcat
     3361 ggagggcaaa gccgaacaag gctatcaaac tcctatgcaa cgcaaagata tttttttaga
     3421 aggcgtgcat gctcttgaag aaaatgctca aaagcgttat aaaaaatctt tttctttgct
     3481 taaaggtgga gatcaggata aaattttaag cgattttgaa aaaggaaaaa ttcaaactac
     3541 aggttttaaa tcttcttatt ttttcacact tttaagagat atgacagtag ctggagtttt
     3601 agctgatcca atttatggcg gaaatgataa taaaaatggt tggagaatga tgcaatatcc
     3661 aggcgcacaa atgagctatg tggataaaat tgcaagtgat gaatttttta acattgaacc
     3721 tatgggttta gcagatatgg agagttaaaa tggctgaagt attaaaaaaa gtagatgtag
     3781 taacagttgg agcaggatgg actggaggta tagtggctgc agagcttact aaagcaggtt
     3841 tgaatgtact tagtttagaa cgcggacata tgcaaagtac tgaaaatttt aattatatcc
     3901 atgatgagtg gagatatggg attaattatg gtttgatgca agattgctca aaagacactg
     3961 tgacttttcg ccatgatcct agtggtttag ccttacctta tcgtaaaatg ggttcgtttt
     4021 tattgggtaa taatgttggc ggtgcagggg tgcattggaa tggttggact tttaggttta
     4081 tgccttatga ctttgaaatt caaaccctaa gcaaacaaag atatggtaat aaattaggta
     4141 atgattatac cttgcaagat tggggcgtga cttataagga tatggagcct tattatgata
     4201 gatttgaaaa aacctgtggg gtatcaggtg aaccaaatcc tttagcggaa aaaatgggag
     4261 cttttagatc cagtccttat ccacaagaac ctcttgaaaa tactaaaatg cttaaacgat
     4321 ttgaaagtgc agcaaaaagt tcaaatttac acacttatcg tttgccagct tcaaattcta
     4381 aaggtggcta tacaaaccct gatggtcaag atttagctcc ttgtcaatac tgtgcgtatt
     4441 gtgagcgttt tggttgtgag tatggtgcaa aagcaagtcc tttaaacaca gtaattccaa
     4501 aggctatgag cacaggtaaa tacaccatac gcacttatag taatgtaacg caaattctta
     4561 aaaaagacgg aaaagtaacg ggagtaaaat ttgtcgatac tagaacgatg aaagagtata
     4621 tccagcctgc tgatatagtt gtacttacaa gttatatgtt taacaatgct aagcttttaa
     4681 tggtaagcag cataggtgag caatacgatc caaaaacagg taaaggaact ttaggtagaa
     4741 attattgtta ccaaatgaat atgggcacaa cagctttctt tgatgagcaa tttaacacct
     4801 ttatgggttc aggtgcttta ggaactacga gtgatgattt taacggagat aattttgatc
     4861 attctaagga aaaattcctt catggagcta tgatttatag cgttcagctt ggaactcgcc
     4921 ctatacaatc agccccactt ccagcaggag ctccaacttg gggtgccgaa tttaaaaaag
     4981 cattaaacta taatttcaca agagctatta ccgtaggagg gcaaggtgct tctttgcctc
     5041 ataagaataa ttatttaagt cttgatccaa cttataaaga tgcttttggt atgccacttt
     5101 tacgcttaac ttataatttc actgatcaag atagagcttt gcataaattt atcacagata
     5161 aaacagctga ggtagcaaaa agaatgcaag gagtaaaatc aatcaaaaaa ggtgcttatc
     5221 ttaaggatta tagcgttgtg ccttatcaat ctactcataa cacaggtgga acaaccatgg
     5281 gcgcagatag agaaactagt gtggttaata cttatttaca acactgggat gcggataatc
     5341 tttttgttgt aggagcagga aatttccaac ataatagtgg atataatcca actgatactg
     5401 tgggagcttt ggcttatcgc tgtgctgaag gtattttaaa atatcataaa agtggaaaaa
     5461 gcttagcttg ataataactt gagagttttt gaaaactctc aagattataa atttttaatt
     5521 ttcttccgat atagtatata atatcaagga aggcaaaaat gattaatggt ataaattctt
     5581 attcaaacta caattataca aaaaggcaaa tgtagtctgc tcttggaggg tggtatgcaa
     5641 gatgattact ttaagttctt ttaatagata ttttggaaat aatcctctgc agacacttac
     5701 taaaattaga gatgaaagta ttgaaaatgc aaaaatttaa attataaaaa ggataaaaaa
     5761 tgttaaatat tttacatgca aattcaagtc atcgtttcca taaatgtatg cctaaggaag
     5821 ttcatcaaat atatgatact ttaaagctta tggaacagca agaaggtaca aaaaaagtag
     5881 aagccaaaaa agaagagcaa agtaattcta caaatacaga taaagtagat aataaaaaaa
     5941 taaattttta gacatgtccg tttagtttta aaacaaagct ttatttataa ggaagattgg
     6001 cataattttt tttatttaaa ttaagaattt taagatgcga tgctgaattt aatgtcgtta
     6061 ttttgtgaat tttgttgata agttctagtg acaagatttt taaagtcttt atcaaaattt
     6121 gaatttttat cgttgttttt tgaatcttta tctgtttttt ctaagctatt ttctgaattt
     6181 ttgtcatctt tttctttatt ttcttcatct ttttctttat tttcttcttc tttttctttg
     6241 gcttcttcgg ctttaagttt cattgcttca gctcttgctt caaattccat ttttgtagca
     6301 tttgctgcaa ctttatagtc ttgtgggcta ggatcagcag gagccatagc tgctgctgcg
     6361 atttgtcttg cattggctat agtttcttct ggtgtgtttc ctttttgcat gctgatagga
     6421 acttcgcccg ctgtagcata catttgatta tcagggcctc ttgtgtaagt aaaacttgca
     6481 gcacctgcta agccgccacc cgctgcttga tgtgcagctt catgagcctt tacatttcta
     6541 tcgatacttt ggagttcgcg aacttgagct acttcttttt ggcttagctc tacgccatta
     6601 accatttggg tttgttcgcc atttttttct ttatcatctt tattttcact aagatttttt
     6661 tcatcttttt gagtggaatc agattgattt gttttatcaa aagaaggttt gctagagtag
     6721 taatcataag agttataact tgaactaatt tgcatttatc ctcctttttg ttttttaaat
     6781 tttaggaatt ttaacgcatt ttgacttaaa aatttgataa attttgtaaa ataatcataa
     6841 atacaatttc aaaggaatgt aatgatttat gaaaatgatt tgatttatat agagaaagag
     6901 gaggctcaag tgccttggct taaaattttt actaaagaaa tttataaaga atttagcgat
     6961 tgtcctttag agttgcaaaa ggaacttttt gaaaaaattt tactttgtga aaaggctatg
     7021 atagaatttt acaaacctga aaaaatcaat atcgcctctt ttgcaaatta tgtgccaagg
     7081 gtgcattttc atgttatggc aagatttaaa gaagatgcgt tttttccaga gtgtatgtgg
     7141 ggaaaacagc aaagagaagc aataaagctt gatttgccta aatttgaaga atttgtaaaa
     7201 tttttaaata gtaaaatttt ttaattttta ttaatgattt gttatgtttt atctaataaa
     7261 atttttatat tgaaaattac tataaaaaag gaaaaaaatg aaaaaagttt tattaagttc
     7321 attggttgcg gtgtctttgt taagcacagg tttgtttgct aaagaatata ctttagataa
     7381 agcacataca gatgtaggtt ttaaaatcaa acatttacaa attagcaatg taaaaggaaa
     7441 tttcaaagat tattctgcgg tgattgattt tgaccctgcg agtgctgaat ttaaaaagct
     7501 tgatgcaact ataaaaatcg catctgtaaa tacagaaaat caaacaagag ataatcactt
     7561 acagcaagat gattttttca aagcaaaaaa atatcctgat atgactttta caatgaaaaa
     7621 atatgaaaaa atcgataatg aaaaaggtaa aatgacagga actttaacta tagctggagt
     7681 ttctaaagat atcgttttag atactgaaat cggcggtgta gctaaaggca aagatggaaa
     7741 agaaaaaata ggcttttctt taaatggaaa aatcaaacgc tctgatttta aatttgcagc
     7801 aagtacttca actattactt taagtgatga tattaattta aatatcgaag ttgaagcgaa
     7861 cgaaaaataa tttttagcct aagagtttaa ttcttaggct ttgtaaactt ttatctaaat
     7921 tttcttcact ttcttgccaa attagtttaa aatctggttt aaaattttca ttttctaaat
     7981 taaattccgt attttttaag gtggattcta aaaaagcaag atgatttaaa gcttgatttt
     8041 tatcattaaa aattaaaata aaatcattgt ctacgatgaa aatttttgct ctaaagcgtt
     8101 ttaaaatttt tgcaatttgt tttaagatga gtttggcata gctttcttta gtatctttta
     8161 gttcattaaa atgaagcaag gcaatgatat agttgttttt tccctttgta aagcgtgtaa
     8221 ggcttttttc attaggtagt tttgttaaga tgtcaaaaaa agccaattta taagcgtgat
     8281 ttaaaagata aaaacaaaaa accaaacttg caaattcaaa ataccttatt cctgctcctt
     8341 cttggaataa aaactgaaaa tatgcagcaa aaaatgcgat aataagataa tattctttag
     8401 ttttaaaagt tttgataaaa atgagtatta agccgactaa aaaaaataaa aatcctaatt
     8461 cactcacagg cttaaaaaaa tctaatgcaa taaaatgaaa ttctaaacca gcgctattaa
     8521 aagtagtatt tctaggtaaa atgatgctta aaacgcctat aaaaataagg gttgtaattg
     8581 aagcaatatt ttttttactt aaaattaaag catggtgttt tccaaggcaa aatagagtaa
     8641 aaatcatagg taaaaacaaa gccacaaata aattagcttg aaaaaaactt gcataaaaat
     8701 aaggcaactt agctcctaat agcactaaag ttaaaaagaa aattcttgaa tttttaaagt
     8761 aaaaggataa tacaa
//
LOCUS       DAZBIH010000057         8687 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.058, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000057 DAZBIH010000000
VERSION     DAZBIH010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8687)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8687)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8687
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.058"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..509)
                     /locus_tag="ACHFOB_001144"
     CDS             complement(<1..509)
                     /locus_tag="ACHFOB_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799952.1"
                     /translation="MKILLLNENPVVSRLVSLSAKKMSYDFEELNAYSENLGNYDVIV
                     VDSDTPAPLKILKEKCDRLIFLAPRNQNVEDIDAQILQKPFLPTDFLNLLNNKDANKH
                     TSIDLPMLSNDENPYADISLDLDNLNLDDLPDENSLDINSEGMEDLSFDDDAQDDNAN
                     KTLETQNLE"
     gene            complement(566..1333)
                     /gene="fliR"
                     /locus_tag="ACHFOB_001145"
     CDS             complement(566..1333)
                     /gene="fliR"
                     /locus_tag="ACHFOB_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliR"
                     /protein_id="HFN5799953.1"
                     /translation="MEFVNYLGDKNVVTFMLLLARMSGLIVFFPFFSHNSIPMVIKST
                     IVLFLTMYLYPLARLESLHLDSFFVLQLISEVIFGMIAGLMLQIIFAIIMMAGEQIAF
                     TMGFTMASILDPSSGTSMPITSQILNLLALMFFLAFDGHHLMLLFLSHSLGYISLGGF
                     YPHENLMHYLNMGMFNIFIIGFTMSFPILGISLLADVIFGLLMKTMPQFNLLVIGYPI
                     KIALGFVVLIAILLVMMQYFKNLILELFTHMQTLFFS"
     gene            complement(1320..1955)
                     /locus_tag="ACHFOB_001146"
     CDS             complement(1320..1955)
                     /locus_tag="ACHFOB_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799954.1"
                     /translation="MELLRAENLSHSFDYPLFEGLNLTLNTKDCIAIQGSSGCGKSTL
                     LHILSSLLIPKKGEVFFKGSSLYQIDENERLKIRRYDFGIIFQTHYLFKGFSALENIE
                     LASVLSGQDLDEKILKRLGIDTLLHQKIGKLSGGQQQRVSIARVLCKKPKIIFADEAT
                     GNLDFDNAKNVIELLISYVKENDAALFFVTHDSKLASFCDKTYTINANGIC"
     gene            complement(1968..3041)
                     /gene="tsf"
                     /locus_tag="ACHFOB_001147"
     CDS             complement(1968..3041)
                     /gene="tsf"
                     /locus_tag="ACHFOB_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translation elongation factor Ts"
                     /protein_id="HFN5799955.1"
                     /translation="MAEITAAMVKELRESTGAGMMDCKNALSETNGDFDKAVQLLREK
                     GLGKAAKKADRLAAEGLVSVKVSDDFTSATVSEINSETDFVAKNDQFIALTKDTTAHI
                     QSNSLQSVEELHSSTINGVKFEEYLKSQIATIGENLVVRRFATLKAGANGVVNGYIHT
                     NGRVGVVIAAACDSTEVASKSRDLLRQICMHIAAMRPSYLSYEDLDMTFVENEYKALV
                     AELEKENEERRRLKDPNKPEHKIPQFASRKQLSDAILKEAEEKIKEELKAQGKPEKIW
                     DNIIPGKINSFIADNSQLDSKLTLMGQFYVMDDKKTVEQVIAEKEKEFGGKIKIVEFI
                     CFEVGEGLEKKTEDFAAEVAAQL"
     gene            complement(3041..3832)
                     /gene="rpsB"
                     /locus_tag="ACHFOB_001148"
     CDS             complement(3041..3832)
                     /gene="rpsB"
                     /locus_tag="ACHFOB_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015935 - small ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HFN5799956.1"
                     /translation="MVSMRDLLECGVHFGHQTRRWNPKMKKFIFGERKGIYVIDLQKT
                     LRYFRYTYNIVRDAAAEGKTILFVGTKKQAGGAIKEYAEKCGMPYVNHRWLGGMMTNF
                     GTIRQSIRKLEVIEKMEEDGSIKLLTKKEALMLTRKKEKLLAYLGGIRYMKTQPDMIF
                     VIDTVKEKIAVQEANRLRIPVVAPLDTNCDPDLVTYPIPGNDDAIRSVQLFCQEMAEA
                     INEGKALREQDGEALANEEKEITDEEKKEVLDEAMSEEDFGEEQE"
     gene            complement(3948..5111)
                     /locus_tag="ACHFOB_001149"
     CDS             complement(3948..5111)
                     /locus_tag="ACHFOB_001149"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN5799957.1"
                     /translation="MLEKQMIKFILSKWNYGNFRIVFWDQEEFHVGNQPAKFSLIFKE
                     KIPFLKLFSDTSLVFAKHYMESKLEIEGDYDEIAKVLYYFSNKRFLKNTEDILSKIAQ
                     KQESKNIKSHYDIGNDFYKLWLDDTMSYSCAYFKEPNNTLYEAQINKIEHTLKKLDLK
                     EGEKLLDIGCGWGWLSIMAAQKYGVKVVGITISEEQCKKAKERVKELGLEDKIEIRLQ
                     NYQDLEFENYFDKVVSVGMFEHVGKENLGLYFMKVKQVLKPGGSMLLHSILAMFEGKT
                     NAWIDKYIFPGGYLPSLREVVSAMSEWDFHLLLAESLRMHYAKTLDLWDENFNKVSDK
                     VREKYDEEFIRMWDLYLRSCASAFRVGSVDLFQFLITKEINNNLSLTKDYIYK"
     gene            complement(5239..6363)
                     /locus_tag="ACHFOB_001150"
     CDS             complement(5239..6363)
                     /locus_tag="ACHFOB_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN5799958.1"
                     /translation="MREIKIFLVVVVFTALVYWGVEPYAHSVMKPHVTPANFDFAVED
                     TTFAKGIVEAKELALKDAQASGDAKRIESANKELEKAKEELSKVETLWADVAKIDFVK
                     GDAKKGKEFFENNCFACHGIKEDGIAANITDSSMGVIPPDLSAAGAIFDEKFLAALIM
                     HPALALKVDHKFGDAFIMTAYNKDTSGESEEATNANIANVIAYLKDVSVKFEANEDAT
                     IKKDVEAKYAKMENSAQRVALMEKDIKFAKDKATFIEACGRCHDMKYDSFFTPSNQND
                     LKTYLGSVPPDLSMMIRSRGEQYLHDFINNTQKLLPGTAMPRVGLTEAAQAKVVSYID
                     QVGDSKKEERKTTGIYVMIFFVILSIFAIGWKRSVWSKLH"
     gene            complement(6360..7610)
                     /locus_tag="ACHFOB_001151"
     CDS             complement(6360..7610)
                     /locus_tag="ACHFOB_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome bc complex cytochrome b subunit"
                     /protein_id="HFN5799959.1"
                     /translation="MAQIRKANGLVDWLDQRLAVHKLLDVLMVKYWIPKQINFLWAMG
                     VILTTLFAVLFVTGLLLVMYYKPDTALAFDSVNKTIMQEVDYGWLWRHMHGVAASVVF
                     LIIYIHMLTGIYYGSYKKGREMIWVSGMFLFVVFSAEAFSGYMLPWGQMSYWAAQVIT
                     NLFGGIPFIGPELVIWIRGDYAVSDPTLTRFFMLHVCLLPIVIIAIIAFHFYSLRIPH
                     VNNEISEELDFDLEAEKYMAGDTKGSKVIPFWPGFLSKDFMYISFFMIFFFYLVCFKF
                     EFAMDPINFDPANALKTPAHIYPEWYFLWSYEVLRGFFFDIAGIKAFDIGLAAFGIAQ
                     VIFFLLPWLDRSDVVKPAHERPLFFIWFWILLIDLIVLTVYGKLPPTGVNAWIGFYAS
                     IVFLLLLIVVLPVITIMERKGAKQ"
     gene            complement(7612..8115)
                     /gene="petA"
                     /locus_tag="ACHFOB_001152"
     CDS             complement(7612..8115)
                     /gene="petA"
                     /locus_tag="ACHFOB_001152"
                     /EC_number="7.1.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045275 - respiratory chain complex III
                     [Evidence IEA];
                     GO_function: GO:0008121 - ubiquinol-cytochrome-c reductase
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009060 - aerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ubiquinol-cytochrome c reductase iron-sulfur
                     subunit"
                     /protein_id="HFN5799960.1"
                     /translation="MATSESRRSFMGFAFGSVAAVGGVFSLVAMKKTWDPLPSVKAAG
                     FTTVDLSGMQDGELRTIEWRKKPIFILKKDASMPKDEKRDVVVDNAAYTVVIGLCTHL
                     GCIPAYQPSEQLFKCACHGGEFDTSGKNVFGPPPKPLEIPPFKIDGTKLVLGEEGPEY
                     KKMIAEA"
     gene            complement(8206..>8687)
                     /locus_tag="ACHFOB_001153"
     CDS             complement(8206..>8687)
                     /locus_tag="ACHFOB_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015105 - arsenite transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015700 - arsenite transport [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ArsB/NhaD family transporter"
                     /protein_id="HFN5799961.1"
                     /translation="ILKIQGKKSIKILFEAPYGVLLFSFGLYMVVFALHKIGVSEILV
                     KSYAFLMQDKSGIFGVALISAFGSSVFNNLPMVLIGDLALKEYFENFSFDSLMIYAHL
                     LGVNIGPKLTPIGSLATLLWLGVLARKGINISFWQYCKFGFLITLPVLVFSLFALIV"
BASE COUNT         3025 a         1688 c         1056 g         2918 t
ORIGIN      
        1 tgttctaaat tttgagtttc taaagttttg tttgcattat catcttgagc atcatcatca
       61 aaactcaaat cttccattcc ctctgaattt atatctaaag aattttcatc aggcaaatca
      121 tctaaattta aattatctaa atccaagctt atatcagcat aaggattttc atcattgctt
      181 aacattggca aatcaataga tgtatgcttg ttcgcatctt tattattaag taaatttaaa
      241 aaatctgtag gtaaaaaagg tttttgtaaa atttgcgcat ctatatcttc tacattttga
      301 tttcgcgggg ctaaaaaaat caatctatcg catttttctt taagaatttt taaaggtgct
      361 ggagtatcac tatctacaac aatcacatca taattaccca aattttcact ataagcatta
      421 agttcttcaa aatcataaga cattttttta gcactaaggc ttacaagtct tgaaactaca
      481 gggttttcat ttaaaagtaa aattttcatc actttaatcc ttaaaaaata atcgctattt
      541 tacgataatt tcatttatcc tttccttagg agaaaaaaag agtttgcata tgagtaaaaa
      601 gttctaaaat taaattttta aaatattgca tcataactag taaaatagca atcaaaacta
      661 caaaacctag agctatcttt ataggatagc caataactaa aagattaaat tgtggcattg
      721 ttttcatcaa aagtccaaaa ataacatcgg ctaaaagtga aattccaagt ataggaaagc
      781 tcatagtaaa acctatgatg aaaatattaa acatacccat atttaaataa tgcattaaat
      841 tctcatgcgg ataaaatcca cctaaactaa tataacccaa agaatgactt aaaaacaaaa
      901 gcattaaatg atggccatca aaagcaagaa aaaacatcaa agcaagtaaa tttaaaattt
      961 gagatgtgat aggcatactc gttccagaac ttggatctaa tatacttgcc atagtaaatc
     1021 ccatagtaaa agcaatctgc tcacctgcca tcataataat agcaaaaata atttgaagca
     1081 ttaatcctgc tatcattcca aaaatcactt cactaataag ctgtaaaaca aaaaaactat
     1141 ctaaatgcaa agattctaat ctagccaaag gatataaata catagtcaaa aataaaacta
     1201 tagtactttt tatcaccata ggaatagaat tatgtgaaaa aaaaggaaaa aaaactataa
     1261 gaccactcat tctagcaaga agcaacataa aagttacaac atttttatca cctaaataat
     1321 taacaaattc cattggcgtt tatagtataa gttttatcac aaaaacttgc aagcttgcta
     1381 tcgtgagtta caaaaaataa agctgcatca ttttctttaa cataggaaat taaaagctcg
     1441 ataacatttt tagcattatc aaaatccaaa tttccagttg cttcatcagc aaaaataatc
     1501 tttggttttt tacaaagcac acgtgcgata ctcacacgct gttgttgtcc gccgctaagt
     1561 tttcctattt tttgatgtaa aagcgtatca atacctaacc tttttaaaat tttctcatct
     1621 aaatcttgac ctgataaaac actagcaagt tcgatatttt ctaaagccga aaaaccttta
     1681 aaaagataat gtgtctgaaa aataatacca aaatcataac ggcgaatttt taatctttcg
     1741 ttttcatcta tctgataaag actagaacct ttaaaaaaaa cttcaccttt ttttggaatc
     1801 aataaagaag aaagtatatg caaaagagta gatttaccac aaccgctact cccttgaata
     1861 gcaatgcaat ctttggtatt taaagtaaga tttaaaccct caaaaagcgg ataatcaaaa
     1921 ctatggctta aattttccgc tcttaagagt tccattttta accgttttta aagttgtgca
     1981 gcaacttcag ccgcaaaatc ttcagttttc ttttctaaac cttcgccaac ttcaaagcaa
     2041 ataaattcaa caattttaat ttttccacca aattcttttt ctttttcagc gatcacttgt
     2101 tctacagttt ttttatcatc cattacataa aactgaccca ttaaagtaag tttgctatcg
     2161 agttgagaat tatcggctat aaagctattt attttgcccg ggataatatt gtcccaaatt
     2221 ttttcaggtt taccttgagc tttaagttct tctttgattt tttcttcagc ttcttttaaa
     2281 attgcatcgc ttaattgttt gcgacttgca aattgaggaa ttttatgttc aggtttattt
     2341 ggatctttaa gtctacgtct ttcttcattt tctttttcaa gttcagcaac caaggctttg
     2401 tattcatttt caacaaaagt catatccaaa tcttcataac ttaaataact tggtctcatt
     2461 gctgcaatat gcatacaaat ttgtcttaac aaatctcttg attttgaagc cacttcagtg
     2521 ctatcacaag ctgcagcgat cacaacgccc acacggccat ttgtatggat ataaccattt
     2581 acaacgccgt tagcacctgc ttttaaagtt gcaaatcttc ttacaactag gttttctcct
     2641 atagttgcaa tttgactttt taaatattct tcaaatttta caccattaat cgtacttgag
     2701 tgaagttctt ctacactttg caagctattg ctttgaatat gagctgtagt gtcttttgtt
     2761 aaagcaataa actgatcatt ttttgccaca aaatctgttt cggaattaat ctcacttaca
     2821 gttgcacttg taaaatcatc acttactttt acacttacta aaccttctgc agcaagtcta
     2881 tctgcttttt tagcagcctt acctaaacct ttttctctta aaagttgtac tgctttatca
     2941 aaatctccat tagtttcact caaagcattt ttacaatcca tcatccccgc gcctgtactt
     3001 tcgcggagtt cttttaccat tgcagcagta atttcagcca ttattcttgc tcctcaccga
     3061 agtcttcttc gctcatcgct tcatctaaaa cttctttttt ctcttcatcg gtaatttctt
     3121 tttcttcatt tgccaaagct tcaccatctt gttctcttaa agcttttcct tcattaatcg
     3181 cttcagccat ttcttggcag aaaagttgca ctgaacgaat tgcatcatca tttcctggaa
     3241 taggataagt taccaaatca ggatcgcagt ttgtatctag tggagctaca acaggaattc
     3301 ttaatctatt tgcttcttga acagctattt tttcttttac tgtgtcaata acaaagatca
     3361 tatcaggttg agttttcata taacgaattc cacctaaata agctaataat ttttcttttt
     3421 ttcttgtaag cattaaagcc tcttttttag ttaaaagctt aatacttcca tcttcttcca
     3481 ttttttcaat tacttctaat tttctaattg attggcgaat agtaccaaaa tttgtcatca
     3541 taccgccaag ccatctatga tttacataag gcataccgca tttttcagcg tattctttaa
     3601 tcgctccacc tgcttgtttt tttgttccaa caaaaagtat agtttttcct tcagcggcag
     3661 cgtcacgaac gatattatag gtatatctaa aatatcttaa agttttttgc aaatcaatta
     3721 cataaatacc ttttctctcg ccaaaaatga attttttcat ctttggattc cagcgtcttg
     3781 tttggtgtcc aaaatgcaca ccgcattcta ataaatctct catactaacc atgagtttct
     3841 ccttataaat ttagctttat tcctccacat cccttaattt acacaagcta aaaaggattg
     3901 atgcgtgtga aatgaagcta atattttatc aaatttaagt ttagttttta cttatatatg
     3961 tagtccttgg taaggcttag attattattg atttcttttg tgattaaaaa ttggaacaaa
     4021 tccacgcttc caacacgaaa agcagaggca caagaacgaa ggtataaatc ccacattctt
     4081 ataaactctt catcatattt ttcccttacc ttgtccgata ctttgttaaa attttcatcc
     4141 cataaatcta aagtttttgc atagtgcatt cttaaacttt ctgctaaaag aagatgaaaa
     4201 tcccactcac tcatagcact tacaacctct cttaaagaag gtaaatatcc tcctggaaaa
     4261 atatatttat ctatccaagc atttgttttt ccttcaaaca tggctaaaat agaatgtaaa
     4321 agcatagaac ctccaggttt taacacttgt tttactttca tgaaataaag tcctaaattc
     4381 tctttgccta catgttcaaa catacccaca gaaacaactt tatcaaaata attttcaaat
     4441 tctaaatctt gataattttg aagtcttatt tctattttat cttcaagacc aagttctttt
     4501 actctttcct tagctttttt acactgctcc tctgaaatag taattccaac aaccttaact
     4561 ccatactttt gagccgccat aatagaaagc caaccccagc cacaacctat atctaaaagc
     4621 ttttctcctt cttttaaatc aagtttttta agggtatgtt ctattttgtt aatttgagct
     4681 tcataaagag tattattagg ctctttaaaa taagcgcaag aatagctcat agtatcatca
     4741 agccaaagct tataaaaatc attacctata tcataatgac ttttgatatt tttactttcc
     4801 tgtttttggg ctattttact caagatatcc tctgtatttt ttaaaaaacg cttatttgaa
     4861 aaataataca aaactttagc tatttcatca taatcacctt ctatttctag tttagactcc
     4921 atataatgtt ttgcaaaaac taaactcgta tcactaaata attttaaaaa aggtattttt
     4981 tctttgaaaa ttaaagaaaa tttagcaggc tgattaccca catgaaattc ttcttgatcc
     5041 caaaatacaa ttctaaaatt tccataattc cattttgaaa gaataaattt aatcatttgt
     5101 ttttcaagca tgacatactc caactaataa aaattattat ttgatagtat ctcttaatta
     5161 tgtttaaaat ttgataaaat tgaagaaaag atagaatttt tgccacagat ataaaatagt
     5221 ggcaaaaatt ttataatact aatgtaattt agaccaaaca gaacgcttcc aacctatagc
     5281 aaaaatactt aaaattacaa agaatatcat tacataaatt cctgtagttt ttctttcttc
     5341 ttttttgcta tcacccactt gatcaatata agatacaacc ttagcctgtg cagcttctgt
     5401 taaacctact cttggcatag cggttcctgg aagaagtttt tgagtattat taataaaatc
     5461 atgtaaatat tgctcaccac gagatcttat catcatagaa agatcaggcg gaacagaacc
     5521 taaataagtt tttaaatcat tttgatttga tggagtaaaa aagctatcgt atttcatatc
     5581 atgacaacgt ccgcaagcct caataaaagt tgctttatct ttagcaaatt ttatatcttt
     5641 ttccattaaa gccactcttt gagcactatt ttccatttta gcatattttg cctcaacatc
     5701 tttcttaata gtagcatctt cattggcttc aaatttaaca ctcacatctt taagataagc
     5761 aattacattg gctatatttg catttgtagc ttcttcactt tctcctgaag tatctttatt
     5821 gtaagctgtc ataataaaag catcaccaaa tttatgatct acttttaaag caagcgcagg
     5881 atgcataatc aaagctgcta aaaatttttc atcaaaaata gcaccagctg cactaagatc
     5941 aggtggtatt actcccatag aagaatcagt aatattagct gctattccat cttcttttat
     6001 accatgacat gcaaaacagt tattttcaaa aaattcttta cctttttttg catcaccctt
     6061 aacaaaatcg atctttgcaa catctgccca aagtgtttca accttgctta attcttcttt
     6121 tgctttttca agttctttgt ttgcactctc tattctttta gcatctcctg aagcttgtgc
     6181 atcttttaga gctaattctt tggcttcaac tatacctttt gcaaaagtag tatcttcaac
     6241 agcaaaatca aaatttgcag gagtaacatg aggtttcatc actgaatgag cataaggctc
     6301 taccccccaa tatacaagtg cagtaaaaac cactacaact aaaaatattt ttatttctct
     6361 cattgtttag ctccttttct ctccataata gtaataaccg gtaaaactac aataagtaaa
     6421 agtaaaaata ctatagaagc ataaaatcct atccaagcat ttacacctgt tggaggtaat
     6481 tttccataaa ctgttaaaac aattaaatcg ataagcaata tccaaaacca aatgaaaaat
     6541 aaaggtcttt catgagctgg ttttaccaca tcacttctat caagccaagg aagcaagaag
     6601 aaaatcactt gagcaatacc aaatgcagcc aaacctatat caaaagcttt aatacctgca
     6661 atatcaaaga aaaatcctct taaaacttca taactccata agaaatacca ctcaggataa
     6721 atatgagctg gtgttttaag cgcattagct ggatcaaaat taattggatc cattgcaaat
     6781 tcaaatttaa aacagaccaa ataaaagaag aaaatcataa aaaagcttat atacataaaa
     6841 tcttttgata aaaatcctgg ccaaaaagga atcactttag aaccctttgt gtcacctgcc
     6901 atgtattttt cagcctctaa atcaaagtca agttcttcag aaatttcatt attaacatga
     6961 ggaattctta aagaatagaa gtgaaatgct ataatagcaa tgataactat aggaagcaag
     7021 cacacatgaa gcataaaaaa tcttgttaaa gttggatcag aaaccgcata atctccacga
     7081 atccaaatca caagctcagg gccaataaat ggtatccctc caaaaagatt agtgattact
     7141 tgagctgccc aataactcat ttgtccccaa ggaagcatat acccactaaa agcttcagca
     7201 gaaaatacaa caaacaaaaa cataccgcta acccaaatca tctcacgacc ttttttataa
     7261 gaaccgtaat aaattcctgt tagcatatgt atgtatataa tcaaaaatac aacagaagcg
     7321 gcaacaccat gcatgtgacg ccaaagccat ccatagtcca cctcttgcat aatagtctta
     7381 ttcacactat caaaagcaag tgcagtatct ggtttataat acatcacaag taaaagtcct
     7441 gtaacaaaaa gcactgcaaa aagagtggtt aaaataaccc ccattgccca aagaaagtta
     7501 atttgctttg gtatccaata ctttaccatt aaaacatcaa gcagtttatg taccgcaagt
     7561 ctttgatcaa gccaatctac aagaccatta gcttttctaa tttgtgccat cttaagcctc
     7621 cgctatcatt tttttatatt caggaccctc ttcacctaaa acaagcttgg ttccatcaat
     7681 tttaaaagga ggaatttcaa gaggctttgg aggaggtcca aagacatttt ttccacttgt
     7741 gtcaaattct ccaccatgac aggcgcattt aaacaattgc tcacttggtt ggtaagcagg
     7801 tatacaaccc aaatgcgtac aaagtcctat aaccacagta taagctgcgt tatctaccac
     7861 aacatcacgt ttttcatctt ttggcatact cgcatctttt tttaatataa aaataggctt
     7921 tttacgccat tctatagttc taagctctcc atcttgcatt cctgataaat ctactgtagt
     7981 aaaacctgca gctttaacac ttggaagcgg atcccaagtt tttttcatcg caacaagtga
     8041 gaaaacaccg cctacagcag ctacgcttcc aaatgcaaag cccataaagc ttcgtctact
     8101 ctcagatgta gccataactt gctcctttcg attttatttt ttaaccaagt taaaagttta
     8161 tcgaaattaa aataaatttt ttctttgttt aacaagtttt gatatttaga caataagagc
     8221 aaaaagagaa aaaacaagca caggtaaagt tatcaaaaag ccaaatttac aatattgcca
     8281 aaaagaaata ttaatgcctt ttctagccaa aactccaagc caaagcaaag ttgctaaaga
     8341 acctattggc gtaagttttg gacctatatt tacacctaaa agatgtgcat aaatcatcaa
     8401 agaatcaaaa gaaaaattct caaaatattc ttttaatgcc aaatctccga ttaaaaccat
     8461 aggcaaatta ttaaacacag aagatccaaa agctgaaatc aaagccacac caaaaattcc
     8521 actcttatct tgcatcaaaa aagcatagct tttaaccaaa atttcactca cacctatttt
     8581 atgtaaagca aaaaccacca tataaagccc aaaactaaaa agcaaaactc cataaggtgc
     8641 ttcaaaaaga attttaatac tttttttacc ttgaattttt aaaataa
//
LOCUS       DAZBIH010000058         8611 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.059, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000058 DAZBIH010000000
VERSION     DAZBIH010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8611
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.059"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..2036
                     /locus_tag="ACHFOB_001154"
     CDS             <1..2036
                     /locus_tag="ACHFOB_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HFN5799962.1"
                     /translation="FARVDDYINEANLIKDMLKQSIETYKKGDNLGAKKLSEDAYFQH
                     FENMEGPIGRNIGRKAITMERKFVNLRRMYKDEAPLTQINALIDSLYYDLDEVAPILQ
                     NGYRLKAEASDTNYDKAKAEKSSLEANAKREADAEALIAQMMGVDKKDLAQSSLTTQA
                     STPANNDTSKLTDDNAGTDLQAAAAMDARLQFILDNISTKFSQAANAFKEKNYQASKD
                     FLNDALFSDYRNTKVEILVNKFTKAGNDQKIQQAIRTLIRQINDAKIDEKGLRDGLDN
                     IEEQIFDVFLQIPNSELSSLQISGFNDETKGKDYAKVSNDIKLALDGILKNYDGFSAS
                     IVDDLQGIYLDIFEASGMENKIGAVDSGLKLKIESLFSKGVALIKASADKKELEATFN
                     DLEQLIASSVDKIQDSTPYSLFIWALSIILREGLEALIIVVAIVSYLVQSGNKNRLNI
                     AYSALFTGVILSFVTAFGVSWLFKENAGQSRELIESIAMLIAVLLLFYVGFWLLSNAQ
                     NKKWTSFIKQGAIDAISNNSAKTLWITVFLAVYREGAETVLFYQALLFDAKTSTDFGA
                     VFGGLGLGILILIVLYFLLKAGAIRIPVKQFFYITSYIIFYMVFVFTGKGIAELIEGK
                     VIIPSLIPMNFEPILWLGIYPYYETLIPQFIVLTMLIIGILITKQISKKGVKS"
     gene            2033..2572
                     /locus_tag="ACHFOB_001155"
     CDS             2033..2572
                     /locus_tag="ACHFOB_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron transporter"
                     /protein_id="HFN5799963.1"
                     /translation="MIKKVLSVVAAAAVISTNLFAGEVPIGDPKELNGMEIAAVYLQP
                     IEMEPRGIDLAASLADIHLEADIHALKNNPNGFPEGFWMPYLTIAYELKNTDTGAIKR
                     GTLMPMVADDGPHYGANIAMEKDKKGGFGVGNYELTFYISNPEKQGFGRHVDEETGVG
                     KWFEPFKVDYKFKYTGTPK"
     gene            2655..4058
                     /locus_tag="ACHFOB_001156"
     CDS             2655..4058
                     /locus_tag="ACHFOB_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S-containing protein"
                     /protein_id="HFN5799964.1"
                     /translation="MSIYFVHFLISVLPLSILMAFIASDKKYIFKSFLVVFLGFLFGY
                     FAFFIAAQFLKTENLIFNFDFVFIGLLLVSFIFYFWKKIEILNFILLGILSFCTALHY
                     YFLSQDFPIFTSSLIDSEGISSLGFIALALLVCILIFFFLKWQKNFNQKTSFMLFLLL
                     ILIESDKALANILLTLMRNSIIETHTFLVSFVGKSNYFGVFGIYIYLIFIAFLAFLSL
                     KIRKKNISKKQILDINYRKNEAKTSLINRYFSSVFISCVISFCIILYFFMVSSKPLTI
                     DEPKEILPDKNGKFIFDIALLRDNKLHRFAYISAEGKVIRFFLINKREDRDSPVAVFD
                     ACMICGDMGYIKKDGQLICISCNVRIFLPSVGKSGGCNPIPLKYEYDGKKITIDVKDV
                     IAGSNYFSQIKEIEVQDPVSKTKVINTQAPFSYSYKGITYYFSNQNNYEEFKKDPTKY
                     VEENEAQFLIQRRNDVG"
     gene            4045..5337
                     /locus_tag="ACHFOB_001157"
     CDS             4045..5337
                     /locus_tag="ACHFOB_001157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5799965.1"
                     /translation="MMLAKMIFNSIFKNKIQKFLAFLTCFLATLLLSTMLNITLSIGD
                     EVTKQLKSYGSNILVLPKGSSLSIEIGNELYEPLKNKNYLEEKNLYMIKDIYWRNNIT
                     ALAPFLEGKITIENSQQKALIYGTYFQKAIKIKDDDDFITGIKSLYPYLAVQGEWAKD
                     DSNEIMLGEDFAKNNKLKLGDTIKLIGENNQSKEAKIVGILLHANPKMSNKIIAPLNL
                     AQDLLNKQGLYSSAEVRAFTIPESALSEKVRRMGEEKLDQLEYDKWYCSAYVGSIASQ
                     ISDGLPGADAKALNAISDAQSLVVKKIQSLMGITCIICLIVASIAISSLMSSEIHRRK
                     KEIGLLKVLGANTFQIYLIFAGENLIVALFAALFGFIFGTAFSQIISLSIFGYFIDIA
                     FIALPLSFIFAGLIALLGCLLPIKNITQLSAAGVLYGR"
     gene            5327..6445
                     /locus_tag="ACHFOB_001158"
     CDS             5327..6445
                     /locus_tag="ACHFOB_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5799966.1"
                     /translation="MVDKFFLNELFKSISFSYQRLFIIVLSVFIGALTCSAFLNIYFD
                     IDTKLSKELKAYGANVMISPKRDENFISNAEYEKIKEILKARALTPFLYDFLNLGSTS
                     GVVLGTDFRALKITKPFLEVKEGSFSLNDFDENSAFLGVNLAKQLGLKTGNELQIYNP
                     NNGKSIKLTIKGILSSNDEFDSIVLAPLSVVQNLSDRAGINYANAVVYGNFDEVKAKT
                     QAINNEFIDAKPISSVSLSEGLVLGKIKALMFLIILVVLIIVTTSVNTTLSSIIFSRK
                     KEIALRLALGAKKSEIFKLFASECFIVSFFASLIGAFCGIFLANVFGYLIFNSSIDFR
                     FIAVFIALIISLIFAFLAAFFPIKRALKINVCENLKGE"
     gene            6442..7095
                     /locus_tag="ACHFOB_001159"
     CDS             6442..7095
                     /locus_tag="ACHFOB_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5799967.1"
                     /translation="MMKKELIKINNLNKEFGKVKALNNINLSVYEGEWLAIMGPSGSG
                     KSTLLNILSLMDTPSSGEYILDNENLEQMDEEQKITLRREKIGLVFQQFHLIPYLNAL
                     ENVMLSQYYHSSVDEEDAKMVLEKVGLSHRLTHLPSQLSGGEQQRVCIARALINNPEL
                     LLADEPTGNLDEANEQIVLQTLQKLKNEGKTIVLITHNPDLAKFADRTLILQHGVLK"
     gene            7092..7580
                     /locus_tag="ACHFOB_001160"
     CDS             7092..7580
                     /locus_tag="ACHFOB_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN5799968.1"
                     /translation="MKKNLLILSILFLLNACSFENSKDTGKVGEKSAEISAKDTLGKA
                     VKLADDNTSLKVLVFFQNGCPSCLKELPSLDEFIQNHPNKISVYAINSIDNANVVKVL
                     AEQFDFKNVKVLKDDLKITNDRYAVFATPTTIIIKDGMIKDRILGEKPWEFFESKLIS
                     LL"
     gene            7541..8044
                     /locus_tag="ACHFOB_001161"
     CDS             7541..8044
                     /locus_tag="ACHFOB_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HFN5799969.1"
                     /translation="MGIFRIQAYFFALIIALFFVACDSGENFKALNSDKTYNFAYNGF
                     EKSLKLNDKAQNFALIFFTKDCGVCKEQIPILQNLAKNYDFNIFVVLGDANDANDAKA
                     WADEKGLSNLAMFYEKRAAKYLSSAIGEIYGVPVLSFFKEGKMDEKFIGLTPYSILEK
                     EIKKVKS"
     gene            complement(8054..8491)
                     /locus_tag="ACHFOB_001162"
     CDS             complement(8054..8491)
                     /locus_tag="ACHFOB_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF411 domain-containing protein"
                     /protein_id="HFN5799970.1"
                     /translation="MKKIILTILFLLTLTQAKEIQVYESPTCGCCDLWADYMKAKGYE
                     VSVHKTNDFLKIKEKMGIKDEYQSCHTGVIEGYAIEGHVPESAIAWLLENKPKDVIGI
                     SAPGMPQGSPGMEQGYSEKYPVILMKKDGSYELYGYFIGDKKL"
BASE COUNT         2996 a         1317 c         1409 g         2889 t
ORIGIN      
        1 cttttgctag agtagatgat tatattaatg aggcaaatct tatcaaagac atgctaaaac
       61 aaagcataga aacttacaaa aagggcgata atctaggtgc taaaaagctt agcgaagatg
      121 cgtattttca acattttgaa aatatggaag gccctatagg aagaaacata ggaagaaaag
      181 ccatcaccat ggagcgtaaa tttgtaaatt tgcgtcgcat gtataaagat gaagcccctt
      241 tgacacaaat taatgcttta attgatagtc tttattatga tcttgatgaa gtagccccta
      301 ttttacaaaa tggatatcgt ttaaaagcag aagcaagcga tacaaactat gataaggcta
      361 aagctgaaaa atcaagccta gaagccaatg ccaaacgcga agctgatgca gaagctttaa
      421 tcgcacaaat gatgggcgtg gataaaaaag atttagcaca aagttcttta accacccaag
      481 cttctacacc tgcaaacaac gacacaagca aacttacaga tgataatgca ggcactgatt
      541 tacaagctgc tgctgcaatg gacgcaagat tgcaatttat actagataat atctctacca
      601 aattttcaca ggcagctaat gcttttaaag aaaaaaacta ccaagctagt aaagattttt
      661 taaatgatgc cttatttagt gattatcgca ataccaaagt agaaatttta gtaaataaat
      721 ttaccaaagc aggaaacgat caaaaaattc aacaagccat acgcaccctt atacgccaaa
      781 tcaacgatgc aaaaatagat gaaaaaggct taagagatgg cttagataac atagaagaac
      841 aaatttttga tgttttctta caaattccaa attcagaact ttcaagtttg caaatttcag
      901 gctttaatga tgaaacaaaa ggcaaagatt acgccaaagt ttctaatgat atcaaacttg
      961 ctttagatgg aattttaaaa aattatgatg gctttagtgc ttctatagta gatgatttac
     1021 aaggaattta tctagatatt tttgaagcaa gcggtatgga aaataaaatc ggtgctgtag
     1081 atagcggctt aaaacttaaa atagaaagtt tattttccaa aggtgtggca ctgattaaag
     1141 caagtgcaga taaaaaagag cttgaagcta cttttaatga cttagaacaa ctcatagcaa
     1201 gcagtgtgga taaaattcaa gattctactc cttattcgct gtttatatgg gctttaagta
     1261 ttattttgcg tgaaggcttg gaagctttga ttatcgttgt agccattgtt tcttatcttg
     1321 tacaaagtgg caacaaaaat cgtttaaata tcgcctatag tgctcttttt acaggagtga
     1381 ttttaagttt tgttaccgct tttggagttt cttggctatt taaagaaaat gcaggacaaa
     1441 gtagagagct tatagagagt attgccatgc ttatagccgt attactactc ttttatgtgg
     1501 gcttttggct actttcaaac gcacaaaata aaaaatggac aagctttatc aaacaaggtg
     1561 ctatagatgc tatatcaaac aatagtgcaa aaaccctttg gatcaccgta tttttagctg
     1621 tttatagaga aggtgcagaa actgtgcttt tttatcaagc cttgcttttt gatgctaaaa
     1681 caagcactga ttttggtgct gtttttggcg ggcttggact tggaatttta atacttattg
     1741 ttttatattt tcttttaaaa gcaggagcca ttcgcatacc tgtaaaacaa tttttctata
     1801 tcacttctta cattattttt tacatggttt ttgtttttac aggcaaaggc atagctgaac
     1861 tcatagaagg aaaagtcatt attcctagtc ttatacctat gaattttgaa ccgattttat
     1921 ggcttggaat ttatccttac tatgaaactt taatccccca atttatagtt ttgacaatgc
     1981 taattattgg cattttgata acaaaacaaa tttcaaaaaa aggagtaaaa tcatgataaa
     2041 aaaagtttta tcagtagttg ctgcagctgc ggttattagt acaaatttat ttgcaggcga
     2101 agtgccaatt ggcgatccaa aagaacttaa tggtatggaa atagccgctg tttatttaca
     2161 acctattgaa atggagccaa gaggtattga tctagctgcg tctttagcag atattcatct
     2221 agaagctgac attcacgcac ttaaaaacaa tccaaatggt tttccagaag gtttttggat
     2281 gccttattta actatagctt atgaacttaa aaataccgac acaggtgcaa ttaaacgcgg
     2341 aactttgatg cctatggtgg ctgatgatgg tcctcactat ggtgcaaata ttgctatgga
     2401 aaaagataaa aaaggtggct ttggcgtagg aaattatgaa cttacttttt atatctcaaa
     2461 tccagaaaaa caaggttttg gacgccatgt tgatgaagaa acaggcgtgg gtaagtggtt
     2521 tgaacctttt aaagtagatt ataaattcaa atacacaggc acgccaaaat gattttacac
     2581 tcggattttc cgagtgttta aatattttta tttttatttg aaaaattaaa ataacaatgt
     2641 ttaaagagta aattatgagt atatattttg tgcattttct tatcagtgtt ttaccactaa
     2701 gtattttaat ggcctttatc gcttctgata aaaaatatat ttttaaaagt tttttagtag
     2761 tttttttagg ctttttattt ggatattttg ctttttttat cgcagcacaa tttttaaaaa
     2821 ccgaaaattt aatctttaat tttgattttg tttttatagg tttattgcta gtaagcttta
     2881 tattttattt ttggaaaaaa attgaaattt taaattttat tttattggga attttaagtt
     2941 tttgcaccgc tttgcattat tattttttaa gtcaagattt ccctattttt actagctctt
     3001 taatcgatag cgaaggtata agttctttag gttttattgc tttagccttg cttgtttgta
     3061 ttttaatttt cttcttttta aaatggcaaa aaaattttaa tcaaaaaaca agctttatgc
     3121 tgtttttact gcttatcctt atagaaagcg ataaagctct agccaatatc ttgcttactt
     3181 taatgcgaaa ttccatcata gaaactcata cttttttggt gagttttgta ggaaaaagta
     3241 attattttgg cgtttttgga atttatattt atttaatttt catcgctttt ttagcattct
     3301 taagcttaaa aattcgcaaa aaaaatataa gcaaaaaaca aattttagat ataaattatc
     3361 gcaaaaacga agctaaaaca agtcttatta atcgttattt ttccagcgtt tttatctcct
     3421 gtgttataag tttttgcatt attttatact tttttatggt aagctctaag cctttaacca
     3481 tagatgagcc taaagaaatt ttacccgata agaatggcaa atttatcttt gatatagctc
     3541 ttttaaggga caacaaactc caccgctttg cttatatcag tgctgaaggc aaagtgataa
     3601 ggttttttct tatcaacaaa agagaagata gggattcccc tgtagctgtt tttgatgctt
     3661 gtatgatttg tggagatatg ggctatatca aaaaagatgg acaacttatt tgcatttctt
     3721 gcaatgtgcg tattttcttg cctagtgtag gcaaaagcgg aggttgcaat cctatcccac
     3781 tcaaatacga atacgatggt aaaaaaatca ccatagatgt taaagatgta atagcaggat
     3841 ctaattattt tagtcaaatc aaagaaattg aagtgcaaga tcctgtatca aaaacaaagg
     3901 ttataaacac ccaagctcct ttttcttata gctataaagg gattacttat tatttttcaa
     3961 atcaaaacaa ctatgaagaa tttaaaaaag atcctacaaa atatgtagaa gaaaacgaag
     4021 cccaattttt aatccaaagg agaaatgatg ttggctaaaa tgatttttaa ctctatattt
     4081 aaaaacaaaa ttcaaaaatt tttagccttt cttacttgtt ttttagccac gcttttgctc
     4141 tctactatgc taaatattac cctaagtata ggcgatgaag taactaaaca actcaaaagt
     4201 tatggctcta atatccttgt tttacccaaa ggctcaagtc ttagtataga aataggtaat
     4261 gaactttatg aacccttaaa aaacaaaaac tacctagaag aaaaaaattt atatatgatt
     4321 aaagacattt attggcgtaa caacatcacc gcacttgctc cttttttaga aggtaaaatc
     4381 acaattgaaa actcccagca aaaagcactt atttatggca cttattttca aaaagccata
     4441 aaaattaaag atgatgatga ttttatcaca ggtataaaaa gtctttatcc ttatttagca
     4501 gtccaaggag aatgggcaaa agatgatagc aatgaaatca tgctaggcga agactttgct
     4561 aaaaacaata aattaaaatt aggagatact atcaaactca taggagaaaa caatcaaagc
     4621 aaagaagcaa aaatcgtagg tattttgctt catgccaatc ctaaaatgtc aaataaaatc
     4681 atcgctcctt taaatttagc tcaagattta ctcaacaaac aaggacttta ctcaagtgca
     4741 gaagtaagag cttttaccat acctgaatca gccctttctg aaaaagtgcg tcgcatgggc
     4801 gaagaaaaat tagatcaatt agaatatgac aaatggtatt gctcagccta tgtaggctca
     4861 atcgctagtc aaattagcga tggcttacca ggtgctgatg caaaagctct aaatgctata
     4921 agtgatgctc aaagcttggt ggttaaaaag atccaatcct taatgggcat tacttgcatt
     4981 atttgtctta ttgttgcaag tattgcgatt tcaagtctaa tgagttctga aattcatcgt
     5041 agaaaaaaag aaataggact tttaaaagta cttggtgcta atacttttca aatttatctc
     5101 atctttgctg gtgaaaattt aatcgtagct ttatttgctg ctttatttgg atttattttt
     5161 ggcacagcat tttctcaaat catcagcctt agtatttttg gatattttat tgatatagcc
     5221 tttatagctt tacctttaag ctttattttt gcaggactta ttgccttact aggttgcttg
     5281 cttcctataa aaaatatcac acaactttca gctgcaggag tgctttatgg tagataagtt
     5341 tttccttaat gaacttttta aaagcattag cttttcttat caaagacttt ttattatagt
     5401 tttaagtgtt tttataggag cacttacttg ctcagctttt ttaaatattt attttgatat
     5461 tgacaccaaa ctttctaaag aattaaaagc ttatggagca aatgtaatga taagtcctaa
     5521 gcgggatgaa aattttatct ccaatgctga gtatgaaaaa ataaaagaaa ttttaaaggc
     5581 tagagcttta actccttttt tgtatgattt tttaaattta ggcagtacaa gcggagtagt
     5641 tttaggcact gattttaggg ctttaaaaat cactaaacct tttttagaag ttaaagaagg
     5701 aagcttttct ctaaatgatt ttgatgaaaa ttcagccttt ttaggagtta atttagccaa
     5761 gcaactaggc ctaaaaacag gcaatgaact tcaaatttac aatccaaaca atggaaaaag
     5821 cataaaactt accataaaag gcatactttc aagcaatgat gaatttgata gcattgtttt
     5881 agccccttta agcgtggtgc aaaatttaag cgatagagcc ggtattaact atgctaatgc
     5941 tgtagtttat ggaaattttg atgaagttaa agccaaaaca caagcaatca acaatgaatt
     6001 catcgatgca aaacctatat cttcagtatc cttaagtgaa ggtttagtac ttggaaaaat
     6061 caaagcttta atgtttttaa tcatacttgt agtattgatc atagtcacta ctagcgttaa
     6121 tacaacttta agctctatta tattttctcg caaaaaagaa atcgcactgc gtttagcctt
     6181 gggtgcgaaa aaaagtgaaa tttttaaact ttttgctagt gaatgcttta tagtaagttt
     6241 ttttgctagt ttaatcggag ctttttgtgg gatattttta gccaatgtct ttggttattt
     6301 gatttttaat tctagtattg attttagatt tatagctgtt tttatagcct taatcatttc
     6361 tttgattttt gcctttttgg ctgcattttt tcctataaaa agagcattaa aaatcaatgt
     6421 gtgtgaaaat ttgaaaggtg aatgatgaaa aaagaactta ttaaaataaa caacttaaat
     6481 aaagaatttg gcaaagttaa agccttaaac aatatcaact taagcgtcta tgaaggagaa
     6541 tggcttgcca tcatgggtcc atcaggaagt ggaaaatcaa cgcttttaaa catactatca
     6601 ctcatggata ctccaagctc tggggagtat atcttggata atgaaaacct agagcaaatg
     6661 gatgaggagc aaaaaatcac cttgcgtcgt gaaaaaatag gacttgtctt tcaacaattt
     6721 catcttatcc cctatcttaa cgccttagaa aatgttatgc tttctcagta ttatcactca
     6781 agcgtagatg aagaagatgc taaaatggtt cttgaaaaag taggactttc gcatagactc
     6841 actcatttac ctagccaatt aagtggcgga gagcaacaaa gagtttgcat agcaagagct
     6901 ttgattaata acccagagct tttactcgca gatgaaccca caggaaattt agatgaagcc
     6961 aatgaacaaa tcgttcttca aaccttgcaa aaattaaaaa atgaaggcaa aaccatagtt
     7021 ttaatcacac acaatcctga tttagccaaa ttcgcagatc gaacccttat cttacaacat
     7081 ggggtgttaa aatgaaaaaa aaccttttaa tcttaagcat tttgttcttg ctcaatgctt
     7141 gttcttttga aaattcaaaa gatactggaa aagttggaga aaaaagcgct gaaatttcag
     7201 ctaaagatac cttaggaaaa gctgtaaaac ttgctgatga taatacaagt ttaaaagtct
     7261 tagtcttttt tcaaaatggt tgcccttctt gcttaaaaga actcccttct ttagatgaat
     7321 tcatacaaaa tcaccccaat aaaatcagtg tttatgctat aaattccatc gataatgcca
     7381 atgtggttaa agttttagcc gaacaatttg actttaaaaa tgtaaaagtt ttaaaagacg
     7441 atcttaaaat caccaatgat cgttacgctg tgtttgcaac ccctactacc atcatcatta
     7501 aagatgggat gataaaagat agaattttag gagaaaaacc atgggaattt ttcgaatcca
     7561 agcttatttc tttgctttaa tcatagcttt attttttgta gcttgtgata gtggagaaaa
     7621 ttttaaagct ttaaatagtg ataaaaccta taattttgcc tacaatggtt ttgaaaaaag
     7681 cctaaaacta aatgataaag cacaaaattt tgccttaata tttttcacaa aagattgtgg
     7741 agtttgtaaa gaacaaattc ctattttaca gaatttggct aaaaattatg attttaatat
     7801 ctttgtggtt ttaggtgatg caaatgatgc aaatgatgca aaagcttggg ctgatgaaaa
     7861 aggtttatct aatttagcaa tgttttatga aaaaagagca gctaaatacc tttcaagtgc
     7921 cattggggaa atatatggag tgcctgtgct tagttttttc aaagaaggaa aaatggatga
     7981 aaaattcata ggcttaactc cttatagcat acttgaaaaa gaaatcaaaa aagtaaaaag
     8041 ctaagaattt actttaaagc tttttatctc ctataaaata tccataaagc tcatagcttc
     8101 catctttttt catcaaaatt acaggatatt tttcactata accttgttcc attcctgggc
     8161 ttccttgcgg catgccagga gctgaaattc ctataacatc tttaggtttg ttttcaagca
     8221 accatgctat agcactttca ggaacatgcc cttcaatagc atagccttcg atcacacccg
     8281 tatggcaact ttgatactca tcttttatac ccattttttc tttgatttta agaaaatcat
     8341 tggttttgtg aacactaacc tcataaccct tagctttcat ataatcagcc caaagatcac
     8401 aacagccaca agtaggactt tcataaactt gtatttcctt agcttgcgta agagtgagta
     8461 aaaaaagaat ggttaaaatt atttttttca taattgctat cctaagtaaa aaatatataa
     8521 taatactttt ataaagttaa taccatcaca tttttaacac taaaaatgaa tttacaaaaa
     8581 tttaatcaag aaaaagattt ttaatgagtg c
//
LOCUS       DAZBIH010000059         8591 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.060, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000059 DAZBIH010000000
VERSION     DAZBIH010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8591
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.060"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..209)
                     /locus_tag="ACHFOB_001163"
     CDS             complement(<1..209)
                     /locus_tag="ACHFOB_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799971.1"
                     /translation="MLEDDFIKERQNIRQKMLKFSRAINQGKPLDDDLRDEISSDDIL
                     RRRFKKKTPNKFLEELDEEYESKHT"
     gene            complement(209..1147)
                     /gene="rsmH"
                     /locus_tag="ACHFOB_001164"
     CDS             complement(209..1147)
                     /gene="rsmH"
                     /locus_tag="ACHFOB_001164"
                     /EC_number="2.1.1.199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016434 - rRNA (cytosine)
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HFN5799972.1"
                     /translation="MILEIPHIPVLLNEVQEIFKNLKTGYFLDCTLGFGGHSEALLKN
                     HPDLKFIACDQDQQALEFSKKRLKDFHNRITFVQSNFSEVLEKISHKEELRGILADIG
                     VSSFQLDNNERGFSVNSDFLDMRMNQNSKISAYEIINTYTKEQLTSIFKDYGELHDAH
                     FIAEKICLERSKNPIKSAKELYQIIGKGKQNHRKISKATLAFQAIRIEVNQELKVLKD
                     FLGRLENLKPKNCILAIISFHSLEDRIVKNFFKKWSKNCICDEKIMRCECGNNHSLGQ
                     IITKKAISASKEELLKNSRSSCAKMRAFYFNNLDNK"
     gene            1306..2796
                     /locus_tag="ACHFOB_001165"
     CDS             1306..2796
                     /locus_tag="ACHFOB_001165"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN5799973.1"
                     /translation="MLTWMQHHKKYLVVTIWVSTIAFVGAGFLGWGAYDFNLNRSSSV
                     ATVGNEKIGFSEFDTRYRQILSYYNQISNGALTPENAEQLGIKNIALSSLVEDKLLLN
                     FAKDLGIGVNENEILQKLANTREFQDPTGDFNKTIYYELLNANNLTPKDYETQLANEV
                     ITDKLNQIFNIPSKDEELKMLASSYFMQDALSIAKIDYDKKNIKINEEDLKKLWDEHK
                     EDYKTKKIYEISTYFLSVSNEKIDDKELEKFYNQDENKLKYKDFAGKVMDFQSAKNEV
                     AKDYALMQLKNVANAKFLDLKNGKDNFQKDQNISESDVYYPIDLLNKAKNGDVLRPAP
                     YNNGYIIVKLNKVDPIRNKTFEEAREEVLPMYLSEQARKNLEEKAKNSLVNFKGDDIG
                     FVSRDSSRESVKLSDKILNDSEFAYFLMNVFNTDQNSSYVIINDNKAILYKINKQKLD
                     MNSDKFEQYKTMLEQNLRNLKANELKQELVDELKKIYPIKIYYKGN"
     gene            2793..4181
                     /gene="ftsA"
                     /locus_tag="ACHFOB_001166"
     CDS             2793..4181
                     /gene="ftsA"
                     /locus_tag="ACHFOB_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0043093 - FtsZ-dependent cytokinesis
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HFN5799974.1"
                     /translation="MILNILGIDLGSTQTCAIIAQKDEDGLKIIGFSKSKTNGVKKGA
                     ITNIELASKSIEEAVRSAEMMSGVHYDKVVVSISGAYTKSVDSIGVVNIPNHEIGIKE
                     IHRAVSTAKHTANLPSGYEIIHVLPYNFKVNDLEHVDDPLGMSGNRLEVSTHIVISQE
                     SHIKNLKKAVELADLRVDNIVLSGYASAIACLDDSEKELGAVLIDMGGAICDMVVHTG
                     NSIRYNDCLQIGSINITQDLSMALHTPLKEAEKIKLSYAALSQQPNTLIQIPSMGDER
                     KVNEVSLDIISNVIYARAEETLMILAKILSDNRYANAIGGGVVLTGGMTKLAGIDELA
                     PATFDNRSVRLATARKDLITGFSEIFNDPENTCAIGLCLYGAGYFTPYELDSNEKLRY
                     KGEIENFNRQIKQDIVLQKDAESEIKSDFFDENLQENDTIAIQEQLDFKEPKEKKPSV
                     FSNIWHKIMNQF"
     gene            4197..5309
                     /gene="ftsZ"
                     /locus_tag="ACHFOB_001167"
     CDS             4197..5309
                     /gene="ftsZ"
                     /locus_tag="ACHFOB_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HFN5799975.1"
                     /translation="MSEFLVEEMQHNKGAKIKVIGCGGGGGNMINHMVKMGLNDLDLI
                     AANTDAQAISISLAKTKIQLGEKKTKGLGAGMLPEVGAESARESFEEIKASLSQSDIV
                     FIASGFGGGTGTGATPVIAQAAKEIGALTVSVVTMPFAFEGKQRKKLAESGLLELKKE
                     SDSILVIQNEKLLSIIDKKAGIKDAFRLVDDILARAVKGMVSILLDNGDINVDFADVR
                     TIMSHRGLALMGVGSASGENAIEEALSNAIESPLLDGMDIKGAKGVILHFKTSSNCSL
                     FEISAAANSIQEIVDENAKIIFGSTTDDSMEDRVEVTIIATGFEDKDTVAKKSTEEAQ
                     ASKKNPYLSLKKVSGGYDEEIMAQIETPTFLRRQMD"
     gene            5465..6277
                     /locus_tag="ACHFOB_001168"
     CDS             5465..6277
                     /locus_tag="ACHFOB_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body protein"
                     /protein_id="HFN5799976.1"
                     /translation="MQNGYYQATGGMVTQFNKLDVITNNLANINTSGYKRDDVVIAGF
                     KRIFKETQDELPIENHTRDASRFVNTTIDGIPQVSQEYTDFSLGFLKATNNPLDLAMT
                     REDAFYLVQTKDGEVRLTKDGNFQLDDEGYLVNKQGYKVLSSDYFNNPQNAGIRIPNG
                     AVQISVDKNGSIEVDGAQNARLFVAQVDDIRALQKDGDNVYKIDDLTRIRDLENSNAI
                     RQGFSQGSNVNPVTEMVGLIEANRMVEMYQKVMTAHMDDLNQEAINKLATVK"
     gene            6306..7097
                     /gene="flgG"
                     /locus_tag="ACHFOB_001169"
     CDS             6306..7097
                     /gene="flgG"
                     /locus_tag="ACHFOB_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009426 - bacterial-type flagellum basal
                     body, distal rod [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HFN5799977.1"
                     /translation="MMRSLHTAATGMVAQQTQIDVTSNNIANVNTAGFKKSRAEFADL
                     MYQVMKYAGTSTSATTLSPSGIEVGVGVRPTAVTKVFTEGNLKSTSTDGLDMAIAGNG
                     FFQIQLPDGTIGYTRNGQFTKDNEGNIVNSDGYRLLPEMTIPEGATAINVATDGTVSV
                     MLPGEQQETQIGQVELVQFINPAGLHSMGDNLYLETGASGAPVAGIAGQDGLGTIRHG
                     FIELSNVQLVEEMTDLITGQRAYEAGSKAITTSDDMLGIVNQLKR"
     gene            complement(7164..>8591)
                     /gene="glnA"
                     /locus_tag="ACHFOB_001170"
     CDS             complement(7164..>8591)
                     /gene="glnA"
                     /locus_tag="ACHFOB_001170"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HFN5799978.1"
                     /translation="GKFVNNIDDFFKFCKQNEVLFVDFRFTDMIGTWHHITYNLHAIN
                     EETFQTGIPFDGSSIHGWQPIEKSDMILKPDAQSAFLDPFTADPTIIVFCDVYDIYKG
                     QMYEKCPRSIAKKAMEHLKNSGIADTAYFGPENEFFVFDSVKIVDTTHCSKYEVDTEE
                     GEWNDDREFTDSYNTGHRPRNKGGYFPVQPIDSLVDIRSEMVQTLEKVGLKTFVHHHE
                     VAQGQAEIGVNFGTLVEAADNVQIYKYVVKMVAHLNGKTATFMPKPLYGDNGNGMHVH
                     MSLWKDGVNLFYDKDGYSGLSQTAINYIGGILKNARSVAAFTNPSSNSYKRIVPGFEA
                     PCILTYSCQNRSASCRVPYGIGKNSARIEIRFPDSTANPYLAFVSLLMAGLDGIKNKT
                     IPVGPMDENLFDLTLDEIREKGIEQLPHTLRGSLEALIRHNSYLKPVMSDIFIDDYQH
                     LKFETQVWPVEARPTAYEFKTCYSC"
BASE COUNT         3024 a         1200 c         1522 g         2845 t
ORIGIN      
        1 ttagtatgtt ttgactcata ctcttcatcg agttcttcta agaatttatt aggagtcttt
       61 tttttaaaac gacgtcttaa aatatcatcg ctagaaattt catctcttaa atcatcatca
      121 agcggtttgc cttgatttat ggcgcgagaa aatttcagca ttttttggcg tatgttttgg
      181 cgttctttta taaaatcatc ttctagcatt atttattgtc caaattatta aaataaaaag
      241 cccgcatttt agcacaacta gagcgagaat tttttaaaag ttcttccttg cttgcactta
      301 tagctttttt ggttattatt tgccctaggc tatggttatt tccacattcg caacgcatta
      361 ttttttcatc acaaatgcag ttttttgacc attttttgaa aaaatttttt actattctat
      421 cttccaaaga atgaaaacta atgattgcta aaatgcaatt ttttggtttt aaattttcta
      481 aacgcccaag aaaatcttta agcactttaa gttcttgatt tacttctatt ctaatggctt
      541 gaaatgctaa agtggctttg gaaatttttc tatgattttg tttgcctttt cctatgattt
      601 gataaagttc cttggcgctt ttgattggat ttttacttct ttctaggcaa attttttcag
      661 caataaaatg tgcatcgtgc aattctccat aatctttaaa aatggaagtt aattgctctt
      721 ttgtataagt attaataatc tcataagccg atattttgga gttttgattc attctcatat
      781 ccaaaaagtc agaatttaca ctaaaacctc tttcgttatt atcgagttga aatgaagaaa
      841 ctccaatgtc tgctaaaata cctcttaatt cttctttatg tgaaattttt tctaaaactt
      901 cactaaaatt actttgtaca aaagttatcc tattgtgaaa atctttaaga cgttttttag
      961 aaaattctaa agcttgttga tcttgatcac aagcaatgaa tttaagatca ggatgatttt
     1021 taagcaaagc ttcactatgt ccgccaaatc ctaaagtgca gtctaaaaaa taacctgttt
     1081 taagattttt aaaaatctct tgaacttcat taagcaaaac tgggatatga ggaatttcca
     1141 aaatcaatcc taataaattt ttataaacta taattataac taaatttcat tgtaaaaatc
     1201 ataaaattta aagaacaaat attttttggt aaaaatttta taattaaact ccacttaaac
     1261 acttctacga tacaatatct agtctaaatt taatcaagga atgatatgct tacttggatg
     1321 caacatcaca aaaaatatct tgttgttact atatgggtta gtactatagc ttttgttggc
     1381 gccggctttt taggttgggg tgcttatgat tttaatctca atagaagttc gagtgttgca
     1441 accgtaggaa atgaaaagat aggttttagc gaatttgata ctagatatag acaaatttta
     1501 agttattata atcaaattag caacggtgct ttaactccag aaaatgctga gcaactaggc
     1561 attaaaaata tagctttaag ctcccttgtt gaagataagc ttttgttaaa ttttgccaaa
     1621 gatttgggta ttggcgtaaa cgagaatgaa attttacaaa aacttgcaaa tactagagaa
     1681 tttcaagatc ctacagggga ttttaacaaa acaatttatt atgaactttt aaatgccaat
     1741 aatttaactc caaaagatta tgaaacacaa cttgcaaatg aagtaattac cgataaactt
     1801 aatcaaattt ttaatattcc tagcaaagat gaagaattaa aaatgttagc ttctagttat
     1861 ttcatgcaag atgctttaag tattgcaaaa attgattatg acaaaaaaaa tattaagatt
     1921 aatgaagagg atttaaaaaa gctttgggat gaacataaag aagattataa aactaaaaaa
     1981 atatatgaaa tttcaactta ttttttgtca gttagcaatg agaaaattga cgacaaagaa
     2041 ttagaaaaat tttataatca agatgaaaat aaactaaaat ataaagattt tgcaggtaaa
     2101 gtgatggatt ttcagtctgc taaaaatgaa gttgctaaag attacgcctt aatgcaacta
     2161 aagaatgtgg ctaatgctaa atttttagat ttaaaaaacg ggaaagataa ttttcaaaaa
     2221 gatcaaaata ttagtgaatc tgatgtttat tatccaattg atcttttgaa taaagctaaa
     2281 aatggagatg ttttacgacc agcaccttat aataacggat atatcatagt taaactaaat
     2341 aaagtagatc ctataagaaa taaaactttt gaagaagcta gagaagaagt tttacctatg
     2401 tatttaagcg aacaagctag aaaaaattta gaagaaaaag ctaaaaatag tttagtaaat
     2461 tttaaaggcg atgatatagg ctttgtaagt cgagatagtt ctcgcgagag tgtaaagctt
     2521 agtgataaga tattaaatga ttctgaattt gcttattttt tgatgaatgt atttaatacc
     2581 gatcaaaata gttcttatgt gatcattaat gacaataaag caatattata taaaataaat
     2641 aaacaaaaat tagatatgaa ctccgataaa tttgaacaat acaaaactat gcttgaacaa
     2701 aatttgcgaa atttaaaagc aaatgagctt aagcaagaac ttgttgatga acttaaaaag
     2761 atatatccga taaaaattta ttataaaggg aattgatttt gaatatatta ggaattgact
     2821 taggctcaac ccagacttgt gccattattg ctcaaaaaga tgaagatgga ttaaaaatta
     2881 ttggtttttc caagtcgaaa accaacgggg ttaaaaaagg tgccattacc aatatagagc
     2941 ttgcttctaa atctattgaa gaagctgtta gaagtgctga gatgatgagc ggagttcatt
     3001 atgataaggt tgtggtgtct atatcaggtg cttatactaa aagcgttgat agcataggtg
     3061 ttgttaatat tccaaatcat gaaataggca ttaaagaaat tcatcgtgct gtaagtacag
     3121 ctaagcatac tgccaatcta ccaagtggtt atgaaattat ccatgttttg ccttataatt
     3181 ttaaggttaa tgatcttgaa catgttgatg atcctttggg aatgagtggc aatcgtttag
     3241 aagtttcaac ccatatagtg atttcacaag aatctcatat taaaaatctt aagaaagcag
     3301 ttgaattagc tgatttaaga gtggataata tagttctttc aggatatgct tcagctatag
     3361 cttgtttaga tgatagcgaa aaggaattag gtgctgtttt gattgatatg ggtggagcga
     3421 tttgtgatat ggttgttcat actggaaatt caattagata taatgattgt ttgcaaattg
     3481 gctcgattaa tatcacccaa gatttatcaa tggcattgca tacaccttta aaagaagcag
     3541 aaaaaatcaa gcttagttat gcagctcttt cacaacagcc taataccctt atacaaattc
     3601 cttcaatggg tgatgaaaga aaggttaatg aagtttcttt ggatattatt tcaaacgtaa
     3661 tttatgcaag agcggaagaa actttgatga ttttggcaaa aatcttaagt gataatcgtt
     3721 atgccaatgc tataggcggt ggagttgttt taacaggtgg aatgactaag ttagcaggta
     3781 ttgatgagct agctcctgca acatttgata atcgctcagt tagactagct actgcaagaa
     3841 aagatttgat tactggtttt agtgaaattt ttaatgatcc tgaaaatact tgtgctatag
     3901 gactttgttt atatggagca gggtatttta cgccttatga acttgattct aatgaaaaat
     3961 taagatataa aggggaaatt gaaaatttta atcgtcaaat taaacaagat attgttttgc
     4021 aaaaagatgc agaaagtgaa ataaaatctg atttttttga tgaaaatttg caagaaaatg
     4081 atacaattgc aatacaagaa caattagatt ttaaagagcc aaaagaaaaa aaacctagcg
     4141 ttttttcaaa tatctggcat aaaattatga atcaatttta acaaggagaa atttttatga
     4201 gtgaattttt agtagaagaa atgcaacata ataaaggtgc aaaaattaag gttataggct
     4261 gcggtggcgg tggcggtaat atgatcaacc atatggttaa aatgggatta aatgatcttg
     4321 atttaattgc agcaaatact gatgcacaag ctatttcaat ttcattagca aaaactaaaa
     4381 ttcaacttgg cgagaaaaaa actaaaggtt taggtgctgg tatgcttcct gaagtaggtg
     4441 cagaaagtgc tagagaaagt tttgaagaaa taaaagcaag tcttagtcaa agtgatattg
     4501 tatttattgc ttcaggtttt ggtggaggta ctggaacggg tgcaactcca gttattgcac
     4561 aagcagctaa agagattgga gctttaactg tttctgttgt aactatgcct tttgcattcg
     4621 aaggaaaaca aagaaaaaaa cttgctgaaa gcggtctcct tgagcttaaa aaagaaagtg
     4681 attctattct tgtaattcaa aatgaaaaat tattgagcat tattgataaa aaagcaggca
     4741 ttaaagatgc ttttagattg gttgatgata ttttagctcg tgctgtaaaa ggtatggtgt
     4801 ctatcttgct tgataatgga gatattaatg ttgactttgc ggatgtaaga accatcatga
     4861 gtcatcgcgg actcgcactt atgggtgttg gtagtgctag tggtgaaaat gctatagaag
     4921 aggctctttc aaacgctata gaatctcctt tgcttgatgg aatggatatt aaaggtgcca
     4981 agggagttat tttacatttt aaaacaagtt ctaattgctc tttgtttgaa atttcagcag
     5041 cagcaaatag tatacaagaa attgttgatg aaaatgctaa gattattttt ggttctacca
     5101 cagatgatag catggaagat agagttgaag tgactattat tgcgacaggg tttgaagata
     5161 aagatacagt agctaaaaaa tctaccgaag aagctcaagc ttctaagaaa aatccttatt
     5221 taagtcttaa aaaggtaagc ggtggttacg atgaagagat aatggcgcaa attgaaacac
     5281 caactttctt gcgtcgtcaa atggattaaa attgattttt aaagcaagat tgagtcaaat
     5341 cttgcttttt atagtttaaa attctctcct aataatcttt caaatattta tttttctttg
     5401 tttttaaaag ttggaacact ctttgctttt atagctataa aatcttaatt ttataggtga
     5461 aaatatgcaa aatggatatt atcaagcaac tggcggaatg gtaactcagt ttaataaact
     5521 tgatgtgatt actaataatc ttgccaatat taatacaagc ggatacaaaa gagatgatgt
     5581 ggttattgca ggttttaaaa ggatttttaa agaaactcag gatgagttgc ctatagaaaa
     5641 tcacacaaga gatgcatctc gttttgtaaa tactacaata gatggaatcc cacaagtttc
     5701 tcaagaatat acggatttta gcctaggttt tttaaaggcc acaaacaatc ctttggattt
     5761 ggcaatgact agagaagatg ctttttattt ggttcaaacc aaagatggag aagtaagatt
     5821 aactaaagat ggaaattttc aacttgatga tgagggttat ttggtaaata agcaaggata
     5881 caaggtatta agtagtgatt attttaataa tcctcagaat gctggcatac gcattcctaa
     5941 tggtgctgtt caaattagcg ttgataaaaa cggaagcatt gaggttgatg gagctcaaaa
     6001 tgcaagatta tttgtagcac aagtagatga tataagagct ttgcaaaaag atggggataa
     6061 tgtctataaa atagatgatc taacccgcat tagagatttg gaaaactcca atgctattcg
     6121 ccaaggtttt tctcagggat caaatgttaa tccagttact gaaatggtag gactgattga
     6181 agcaaacaga atggtagaaa tgtatcaaaa agttatgaca gctcatatgg atgacttaaa
     6241 tcaagaagct atcaataagc ttgcaactgt taaataattt aaaataaaat aaaaaaggat
     6301 tgaaaatgat gagatcactt catactgctg ctacgggaat ggtagcgcag caaacacaaa
     6361 ttgatgttac ttcaaataat atcgccaatg ttaatacagc aggttttaag aaaagtcgcg
     6421 cagaatttgc tgatcttatg tatcaagtta tgaagtatgc aggaacttca acttcagcta
     6481 ctactctttc tccttcgggt atagaagtgg gtgtgggtgt gcgtccaaca gcggtaacta
     6541 aagtttttac tgaaggaaat ttaaaatcaa caagtactga tggtcttgat atggctattg
     6601 caggtaatgg gttttttcaa atacaacttc ctgatggcac tataggatat actagaaatg
     6661 ggcaatttac aaaagataat gaaggcaata ttgtaaattc agatggttat agacttttac
     6721 ctgaaatgac aatacctgaa ggcgcaacag caattaatgt tgctacagat ggaaccgttt
     6781 ctgtaatgct accaggggag caacaagaaa ctcaaattgg ccaagtggag ctagttcagt
     6841 ttataaatcc agcgggtctt cattctatgg gtgataatct ttatcttgaa acaggagcaa
     6901 gtggtgcacc tgttgcgggt atagcaggac aagatggact tggaacaata agacatggat
     6961 ttatagaact tagtaatgtt cagcttgttg aagaaatgac agatcttatc acaggacaaa
     7021 gggcttatga agcgggttct aaggcaatta caacaagtga tgatatgcta ggaattgtaa
     7081 atcagcttaa gcgatagttg atataaaata aataattttt aattcttttt tagtttaatg
     7141 gcgtgttaaa cgccattaaa tttttagcaa gagtagcaag ttttaaattc ataagcagtt
     7201 ggacgagctt ctactggcca aacttgtgtt tcaaatttta aatgctgata gtcatcgata
     7261 aaaatatcgc tcattacagg ttttaaataa gaattatgtc ggattaaagc ttctaaactt
     7321 cctcttagag tatgtggtaa ttgctctatc cctttttcac gtatttcatc cagagtaaga
     7381 tcaaataaat tttcatccat aggacctaca ggaatggttt tatttttgat tccatcaaga
     7441 cctgccatta aaagactaac aaaagctaaa taaggattag cagtgctatc agggaagcga
     7501 atttctatac gagctgaatt tttacctatg ccataaggaa cgcgacaact tgctgatctg
     7561 ttttgacaag aataagttaa aatacaagga gcttcaaagc caggaactat tcttttgtaa
     7621 gagttggaac ttggatttgt aaaagctgca acacttctag cattttttaa aattccacct
     7681 atataattta tagcagtttg actaagtcca ctgtatccat ctttatcgta aaataaattt
     7741 actccatctt tccataagct catatgaaca tgcataccat tgccattatc tccgtataaa
     7801 ggttttggca taaaagtggc agttttgcca tttaaatgag ctaccatttt tacaacatat
     7861 ttataaattt gaacattgtc agctgcttct acaagcgtgc caaaatttac tcctatttca
     7921 gcttgtcctt gtgcaacttc atgatgatga acaaaagttt taagacctac tttttcaagg
     7981 gtttgaacca tttcagaacg aatatctact aaagaatcaa ttggctgaac tggaaaatat
     8041 ccacctttgt ttcttggcct gtgtccagta ttgtagctat cggtaaattc tctatcatca
     8101 ttccactctc cttcttcggt atcaacttca tacttagaac aatgagtagt atcaactatt
     8161 tttacactat caaaaacaaa gaattcattt tctggtccaa agtaagcagt atcagctatg
     8221 ccactatttt taaggtgttc cattgctttt tttgctatgc ttcttggaca tttttcatac
     8281 atttgtcctt tgtaaatatc atacacatca caaaatacta tgatagtagg atcagccgta
     8341 aaaggatcta aaaaagcact ttgagcatca ggttttaaaa tcatatctga tttttctata
     8401 ggttgccatc catggattga gcttccatca aatggaatgc cagtttgaaa tgtttcttca
     8461 ttgattgcat gaagattata ggtaatatga tgccaagttc ctatcatatc tgtaaaacga
     8521 aaatcaacaa aaagcacttc attttgtttg caaaatttga aaaaatcatc tatattatta
     8581 acaaattttc c
//
LOCUS       DAZBIH010000060         8563 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.061, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000060 DAZBIH010000000
VERSION     DAZBIH010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.061"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..359
                     /locus_tag="ACHFOB_001171"
     CDS             <1..359
                     /locus_tag="ACHFOB_001171"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799979.1"
                     /translation="ITEIIKLNLFAVFLVKQHLSYKLGKRIVQTKSILDIIELPLDLK
                     NIVDSHKRNQLIPYNIKIENCLDYGEALKIKNYFSYKLGLILIKAHKNWYKGGYIKFW
                     FDLYKLKKEYKNKKGK"
     gene            359..904
                     /locus_tag="ACHFOB_001172"
     CDS             359..904
                     /locus_tag="ACHFOB_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTDP-4-dehydrorhamnose 3,5-epimerase family
                     protein"
                     /protein_id="HFN5799980.1"
                     /translation="MAIEFNIQESKILKGVYIITPNKFRDLRGEIWTAFTSKAVDKLL
                     PNGLKFIHDKFIHSKHNVIRGIHGDVKTYKLATCVYGEIHQVVVDCRKDSPTYLKYEK
                     FIINQDNQQIILVPAGFGNAHYVTSESAVYYYKCAYKGDYVDAPDQFTYAWNDERIGI
                     DWPTNSPILSERDILATKNKG"
     gene            907..1830
                     /locus_tag="ACHFOB_001173"
     CDS             907..1830
                     /locus_tag="ACHFOB_001173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HFN5799981.1"
                     /translation="MEKLLQELNVNIKVGNQLSYQILMSNIISNLDIDKRDKEILFLL
                     LQDRDRNYIRINNNEQCYRNIVNYLNLIRPLELPLYDLLRIGGNGDGGYVMYNGGGYM
                     SNIDAKALSLGVSDSSPWDLEMAQRGFKVIEYDASIEKCPYSHENIIFHKKFIGNINN
                     ENTITLAQALKDNNLDESRPNILQCDIENCEWDMLENIDISILNKYFSQVIFEFHGCN
                     PEEQDGVEKRISLLKKLNEYFIPIHTHLNNHGKIFYSKGLFFSTTLEVSYLRRNELNL
                     MQGLHYRKECGNLQNLDFPVWPSNPEIPLRF"
     gene            1840..2898
                     /locus_tag="ACHFOB_001174"
     CDS             1840..2898
                     /locus_tag="ACHFOB_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002883706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-L-fucose synthase family protein"
                     /protein_id="HFN5799982.1"
                     /translation="MQKDSKIYIAGHSGLVGSAILNELKQQGYKNLVFKTHFELDLTN
                     QKAVADFFEREKPEYVILAAAKAGGILANNTYRADFIYQNLMIECNVIHNAYLHKVKK
                     LLFIASTTVYPKNATLPTSEEQMLSGDLEYTNKPYAIAKISGLMLCESYNLQYNTNFI
                     AITPTNLYGNNDKFDLEKSHVLPGILRKMHLAKLLNEKRYEDLLNDLKFDSIEEAKNY
                     LKKFGVDKDNVEIWGSGKPTREFLHSQDLANACLFIMNNIDFKDLKSDNIEIINTHLN
                     IGPHKNITIKELAELIKNIVGFKGKLVFNLNRPDGAMQKFTDCSKIHSLGWKHKIELE
                     DGIKMMYKWYLKEQNIRQ"
     gene            2907..3941
                     /locus_tag="ACHFOB_001175"
     CDS             2907..3941
                     /locus_tag="ACHFOB_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002830388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GDP-mannose 4,6-dehydratase"
                     /protein_id="HFN5799983.1"
                     /translation="MKKTALITGFTGQVGSQMADFLLENTDYDVIGMMRWQEPMDNIY
                     HLSDRINKKDRISIFYADLNDYSSLQKLFESQRPDVIFHLAAQSYPKTSFDIPIETLQ
                     TNIIGTANILENIRILKAKEGYDPVVHICSSSEVYGKAKVGVKLNEETAFHGASPYSI
                     SKIGTDYLGKFYGEAYNIRTFVTRMGTHSGPRRSDVFFESTVAKQIALIEAGYQEPVI
                     KVGNLSSVRTFQDCRDAIRAYYLLSLESEKGNIPCGEAFNIAGEEAFKLPEVIDILLN
                     FSDMGRGIEVRQVEDRMRPIDADYQMFDNSKIKSFIDWKAEIPVRQMLKDLLNHWRNE
                     IKRGRIPLNR"
     gene            3965..4903
                     /locus_tag="ACHFOB_001176"
     CDS             3965..4903
                     /locus_tag="ACHFOB_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent epimerase/dehydratase family
                     protein"
                     /protein_id="HFN5799984.1"
                     /translation="MLKKVLITGGAGYIGSVLTPILLEKGYEVCVIDNLMFDQISLLS
                     CSHNKNFTFINGDAMDENLIKQEVAKADIIIPLAALVGAPLCKRNPKLAKMINYGAVK
                     MISDFASPSQIFIYPNTNSGYGIGEKDAMCTEESPLRPISEYGIDKVHAEQYLLDKGN
                     CVTFRLATVFGISPRMRLDLLVNDFTYRAYKDKFIVLFEEHFRRNYIHVRDVVKGFIH
                     GIENYDKMKGQAYNMGLSSANLTKRQLAETIKKYIPDFYIHSASIGEDPDKRDYLVSN
                     AKLEATGWKPDNTLEDGIEELLRAFKMMKVNRFANV"
     gene            4978..5997
                     /gene="hddA"
                     /locus_tag="ACHFOB_001177"
     CDS             4978..5997
                     /gene="hddA"
                     /locus_tag="ACHFOB_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycero-D-manno-heptose 7-phosphate kinase"
                     /protein_id="HFN5799985.1"
                     /translation="MKTIRTQTPLRLGLAGGGTDINLYCDKYTGYVLNATISLYIHCT
                     LIEREDGKIIFDSPDTNSYSEYESKEFLGNDGKLDIFKSIYNRIVKDFTKKPLSFSLH
                     TYSDVPSGSGLGGSSTLVVGVIKAFAEWLNLPLGEYEIAKLAYEIEREDLGIVGGAQD
                     QYAATFGGFNFMEFYDNKRVIVNPLRIKNWIASELEARTVLYFTNITREAKDIEEHKK
                     GKLGDEKSLEAMHAIKQDAIKMKEALFKADFDTLAQILGKSWQSKKIISEIVSNDELE
                     RIYHLAMQNGAYSGKTSGAGAGGFMFFFVDPTKKYNLIKALSKEQGYVQDFSFTKEGV
                     KSWRI"
     gene            5985..6590
                     /gene="gmhA2"
                     /locus_tag="ACHFOB_001178"
     CDS             5985..6590
                     /gene="gmhA2"
                     /locus_tag="ACHFOB_001178"
                     /EC_number="5.3.1.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-sedoheptulose 7-phosphate isomerase"
                     /protein_id="HFN5799986.1"
                     /translation="MENLNSYIKEHFQESILVKEQILKDENLITLIKNASLEVIKAYK
                     NGNKTLLAGNGGSAADAQHIAGEFVSRFYFDRPGIASIALTTDTSILTAIGNDYGYEN
                     LFARQVQAQGVKGDVFIGISTSGNSKNILKALELCKQKEIISIGLSGANGGAMNELCD
                     YCIKVPSTCTPRIQEAHILIGHIICAIVEEELFGKGFSCKQ"
     gene            6578..7252
                     /locus_tag="ACHFOB_001179"
     CDS             6578..7252
                     /locus_tag="ACHFOB_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HFN5799987.1"
                     /translation="MQAIILCGGLGTRLKSVIKDIPKPMAPINDKPFLEFIFEYLKKQ
                     GIKEVILAVSYKYEVIKEYFKDEFLGIKIKYSIEKEPLGTGGAIKEALKIIKNETYVL
                     NGDTFFGIDLSKLKLNGSKICLALKQMNDFDRYGTVNVNEQGFVISFEEKIFKNQGLI
                     NGGIYLLTKDIFNEFDLEKKFSFEEFLRENYEKLKAKAHIFDDYFIDIGVPEDYYNFT
                     TNQSHF"
     gene            7265..8563
                     /locus_tag="ACHFOB_001180"
                     /pseudo
     CDS             7265..8563
                     /locus_tag="ACHFOB_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860373.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="sugar transferase"
BASE COUNT         3237 a         1005 c         1515 g         2806 t
ORIGIN      
        1 ttatcactga aattataaaa ttaaatttat ttgccgtatt tttagtaaaa caacatttat
       61 cctataagct aggaaaacgt attgtgcaaa caaaatcaat tttagatata attgagctac
      121 ctttagattt aaaaaatatc gttgattctc ataaaagaaa tcaattaata ccatataata
      181 ttaaaattga aaattgttta gattatggcg aggctttaaa aataaaaaat tatttttctt
      241 acaaattagg tttgattttg attaaagctc ataagaattg gtataaaggt ggatatatta
      301 aattttggtt tgatttatat aaacttaaaa aagaatataa aaataaaaaa ggcaaataat
      361 ggcaatagaa tttaatatac aagaatcaaa aattttaaag ggagtgtata tcataactcc
      421 taataaattt agagatttaa gaggtgaaat ttggacagct tttacaagca aggctgtaga
      481 taagctttta ccaaatggat taaaatttat acacgataaa tttatacact caaaacacaa
      541 tgttattcgc ggtatccatg gcgatgtaaa aacttataag cttgcaactt gtgtttatgg
      601 ggaaattcat caggtggtgg tagattgcag aaaagattcg ccaacctatt taaagtatga
      661 aaaattcatc ataaatcaag ataatcagca aatcatctta gtgccagcag gttttggaaa
      721 tgctcattat gttactagtg aaagtgcagt ttattactat aaatgtgctt ataaaggaga
      781 ttatgtggat gcgcctgatc aatttactta tgcatggaat gatgaaagaa tcggtataga
      841 ttggccaaca aattctccta ttctttcaga acgtgatatt ttagcaacta aaaataaagg
      901 ataaatatgg aaaaattatt acaagagtta aatgttaata ttaaagttgg taatcaattg
      961 tcttatcaaa ttttaatgtc aaatattatt tcaaatttag atattgataa aagagataaa
     1021 gaaattttat tcctattatt acaagataga gatagaaatt atattcgcat aaataacaat
     1081 gagcagtgtt ataggaatat tgtaaattat ttaaatctta ttcgaccttt ggaactgcct
     1141 ttgtatgatt tactaagaat tggtggtaat ggagatggtg gttatgtaat gtataatggg
     1201 ggggggtata tgagcaatat tgatgcgaaa gctctttctt taggtgtttc agacagttct
     1261 ccttgggatt tggaaatggc tcaaagagga tttaaggtaa ttgaatatga tgctagcata
     1321 gaaaaatgtc cttatagtca tgaaaatatt atttttcata aaaaatttat aggcaatata
     1381 aacaacgaaa atacaattac tttagcacaa gctttaaaag ataataattt agatgagagt
     1441 aggccaaata ttttgcaatg tgatattgaa aattgtgaat gggatatgct tgaaaatatt
     1501 gatataagta ttttaaataa atatttttca caagttatat ttgaatttca tgggtgtaat
     1561 cctgaagagc aagatggggt tgaaaaaaga ataagtttac taaaaaaact taatgaatat
     1621 tttattccaa tacatacaca tttaaataat cacggaaaga ttttttattc taagggatta
     1681 ttttttagca ctaccttaga agtaagttat ctaagaagaa atgagttaaa tttaatgcag
     1741 ggtttacatt acagaaaaga atgcggaaat ttgcaaaatt tagattttcc agtttggcca
     1801 tctaatcctg aaattccatt aagattttaa ggataaatga tgcaaaaaga ttctaaaatt
     1861 tatatagcgg gtcatagtgg tcttgttggt agtgctatac ttaatgaact taagcaacaa
     1921 ggttataaaa atcttgtttt taaaactcac tttgagctcg atttaacaaa tcaaaaagct
     1981 gtggctgatt tttttgagag agaaaagcca gagtatgtta ttttagcagc agctaaagcg
     2041 ggtggaattc tagctaataa tacttatcgt gctgatttta tttatcaaaa tttaatgata
     2101 gagtgcaatg ttattcataa tgcttattta cataaagtaa aaaagctact tttcatagct
     2161 tcaactacgg tttatcctaa aaatgcaaca ttgccaacta gtgaagagca aatgttaagt
     2221 ggagatcttg agtatactaa caaaccttac gcaatcgcta aaatttcagg cttgatgctt
     2281 tgtgaaagtt ataatttgca atacaataca aattttatag caatcactcc tacaaattta
     2341 tatggtaata atgacaaatt tgatcttgaa aaatctcatg tattgcctgg aattttaaga
     2401 aaaatgcatt tagccaagct tttaaatgaa aagcgatacg aggacttatt aaatgattta
     2461 aaatttgatt ccattgaaga agctaagaat tatttaaaaa aatttggcgt agataaggat
     2521 aatgttgaaa tttggggtag cggaaaaccg acaagagaat ttttacatag tcaagattta
     2581 gcaaacgctt gcttgtttat tatgaataat atagatttta aagatttaaa aagtgataat
     2641 attgagatta tcaatactca tttaaatata ggcccacata agaatatcac tatcaaagaa
     2701 ttagcagaat taatcaaaaa tatagtggga tttaagggaa aattagtttt taatttaaat
     2761 cgtccagatg gagcaatgca gaaatttaca gattgctcaa aaattcattc tttaggctgg
     2821 aaacataaaa ttgaacttga agatggcatt aagatgatgt ataaatggta tttaaaagag
     2881 caaaatataa gacaatagga taaatcatga aaaaaacagc gttaattaca ggatttacag
     2941 ggcaagttgg ttctcaaatg gcagatttct tgctagaaaa cacagactat gatgttatag
     3001 gtatgatgcg ttggcaagaa cctatggata atatctatca tttaagtgat aggatcaata
     3061 aaaaagatag aatcagtatt ttttatgcag atttaaatga ttactctagt cttcaaaaac
     3121 tttttgagag tcaaaggcct gatgtgattt ttcacctagc agctcagtct tatccaaaaa
     3181 cttcttttga tatacctata gaaactttac agactaacat aataggcaca gcaaatattt
     3241 tggaaaacat tagaatttta aaggcaaaag aggggtatga ccctgtagtg catatctgct
     3301 cttcaagtga agtttatggt aaagcaaaag taggcgtaaa acttaacgaa gaaacagctt
     3361 ttcacggtgc aagtccttat agcataagca aaatcggcac tgattatttg ggaaaatttt
     3421 atggcgaagc ttataacatt cgcacttttg ttacaagaat gggaacacat agtggcccaa
     3481 ggcgttctga tgtatttttt gaaagcacag ttgcaaaaca aattgctttg attgaagcgg
     3541 gctatcaaga gcctgtcatt aaggtgggca atttatctag tgtaagaact tttcaagatt
     3601 gccgtgatgc tataagagct tattatctac tttctcttga aagtgaaaaa ggaaatattc
     3661 cttgtggcga agcttttaat atagcaggtg aagaagcctt taaacttcct gaagttatag
     3721 atatattact aaattttagt gatatgggga ggggtattga ggtaagacaa gttgaagata
     3781 ggatgcgtcc tattgatgca gactatcaaa tgtttgataa tagtaaaata aagagtttta
     3841 tcgattggaa ggctgaaatt cctgttagac aaatgcttaa agatttgcta aatcattgga
     3901 gaaatgaaat taagagaggc agaattcctt taaatcgata aaaccatcga tttaaaggaa
     3961 aaatatgtta aaaaaagttt taattacagg cggcgcaggt tatataggtt cggttttaac
     4021 accgatttta cttgaaaaag gttatgaagt ttgtgtgatt gataatttga tgtttgatca
     4081 aatctctctt ttatcttgtt ctcataataa aaattttact tttataaatg gtgatgctat
     4141 ggatgaaaat ctcattaagc aagaggtagc aaaagctgat atcatcattc ctttggctgc
     4201 tttagttgga gctccacttt gtaaaagaaa tccaaaatta gccaaaatga tcaattatgg
     4261 agctgtaaaa atgataagtg attttgcaag tccttctcaa atatttattt atcccaatac
     4321 aaatagcggt tatggtatag gagaaaaaga tgcaatgtgc actgaagaat ctcccttgcg
     4381 tcctatctca gaatatggga tcgataaagt gcacgcggag caatatttgc ttgataaagg
     4441 aaattgtgta acttttcgtt tggctactgt ttttggaatt tcacctagaa tgagacttga
     4501 tttacttgtt aatgatttta cctatcgtgc atataaagat aaatttatag tgctttttga
     4561 agagcatttt agacgcaatt atattcatgt tcgcgatgtg gttaaaggat ttattcatgg
     4621 aattgagaat tatgataaga tgaagggtca ggcttataat atgggattaa gttctgcaaa
     4681 tttgactaaa agacagcttg ctgaaacgat taaaaagtat attcctgatt tttatatcca
     4741 ttcagccagc ataggcgaag atccggataa aagagattat ttggtttcaa atgctaaatt
     4801 agaggctaca ggttggaaac cagataatac tttagaagat ggcattgaag aacttttaag
     4861 agcgtttaaa atgatgaaag ttaatcgctt tgcaaatgtt taaataatat tatatagaag
     4921 ttaagtatat tttgctataa ttttataata aattatagca aaataagtag taattcaatg
     4981 aaaaccatac gcacgcaaac tcctcttcgc cttggtttag caggtggtgg aactgatata
     5041 aatttatatt gtgataaata cacaggttat gttttaaatg cgactatatc tttatatata
     5101 cattgcactt tgatcgaaag agaagatgga aaaatcattt ttgattcgcc tgatacaaat
     5161 tcttactctg agtacgaaag taaagaattc ttaggaaatg atggaaaatt agatattttt
     5221 aaaagtattt ataatcgcat tgtaaaagat tttacaaaaa aacctttaag tttttctttg
     5281 catacatact cagatgtacc aagtggtagt ggtttgggcg gaagctcaac tttggttgta
     5341 ggggttataa aagcctttgc agaatggctt aatctacctt taggagaata tgaaatcgct
     5401 aagcttgctt atgagataga aagagaagat ttaggcatag taggcggagc acaagatcaa
     5461 tacgccgcaa cttttggtgg ctttaatttt atggaatttt atgataataa aagagtcatt
     5521 gttaatcctt tgcgtattaa aaattggata gctagtgagc ttgaagctag aactgtgctt
     5581 tattttacaa atattacaag agaagcaaaa gatatagaag aacataaaaa aggaaagctc
     5641 ggagatgaaa aatcccttga agctatgcac gctataaaac aagatgctat aaagatgaaa
     5701 gaagctttgt ttaaggcgga ttttgatact ttggcacaaa ttttaggaaa atcttggcag
     5761 tcaaaaaaaa tcatttcaga aatcgttagc aatgatgagc ttgaaagaat ttatcattta
     5821 gctatgcaaa atggagctta tagtggcaaa actagtggag caggagcagg tggatttatg
     5881 tttttctttg tagatcctac taaaaaatac aacctaatca aagctttaag taaagagcaa
     5941 ggttatgtgc aagatttttc atttacaaaa gagggggtta aatcatggag aatttaaatt
     6001 cttatataaa agaacatttt caagaatcaa ttttagtaaa agagcaaatt ttaaaagatg
     6061 agaatttgat aactcttatt aaaaatgctt cattagaagt cataaaagct tataaaaatg
     6121 gtaacaaaac tttacttgca ggaaatggtg gtagtgctgc agatgcacag catatcgcag
     6181 gggaatttgt aagtaggttt tattttgata gacccggtat cgcaagtatt gcacttacta
     6241 cagatactag catattaaca gctattggca atgactatgg ttatgaaaat ttatttgcaa
     6301 gacaagtgca agcacagggt gttaaaggag atgtttttat aggaatttct acaagtggaa
     6361 atagtaaaaa tattttaaag gctttagagc tttgcaagca aaaagaaatc ataagcatag
     6421 gcttaagcgg agctaatggc ggggctatga atgagctttg tgattattgt ataaaagtac
     6481 cttcaacttg cacaccaaga attcaagaag cacatatttt aataggacat attatttgtg
     6541 ctatcgttga agaagagctt tttggcaaag gtttttcttg caagcaataa tactttgtgg
     6601 cggcttagga acaaggctta aaagtgttat aaaagacatt ccaaagccta tggcaccgat
     6661 aaatgataag ccttttttag aatttatttt tgagtatctt aaaaagcaag gcataaaaga
     6721 agttatctta gcggtatcat acaaatatga agtgataaaa gagtatttta aagatgagtt
     6781 tttaggcata aaaataaaat acagtataga aaaagagcct ctaggaacgg gtggagctat
     6841 aaaagaggct ttgaaaatta taaaaaacga gacttatgtt ttaaatggcg atactttttt
     6901 tggcatagat ttaagcaaat taaagctaaa tggaagtaaa atttgccttg ctttaaaaca
     6961 aatgaatgat tttgatagat atggcacagt aaatgttaat gagcaaggtt ttgtgatttc
     7021 ttttgaggaa aaaatattca aaaatcaggg tttaatcaat ggtggaattt atcttttaac
     7081 taaagatatt tttaatgaat ttgatttaga gaaaaaattt tcttttgaag agtttttacg
     7141 agaaaattat gaaaaactaa aagctaaagc tcatattttt gatgattatt ttatagatat
     7201 tggtgtgcct gaggattatt ataattttac aaccaaccaa agccattttt aaaggagaaa
     7261 ccctatgtat aacccaaact cagctataga aagagtaaaa aatcatcttg cttataaact
     7321 aggtcaagct atgattgagt ttacaaacaa tggggggggg gtatatagca ttatttaaaa
     7381 aactctataa aattaaaaag caacacaaaa aagaacaaaa aatttatcaa caaactatac
     7441 aaatctttcc tcagctcaaa tatccaagtt tagaaacatg tggtgattat gaacaagctt
     7501 taagatataa atttcatttg tcctatatgc tgggtgaagt tttaatcaag gctgataaaa
     7561 cttggcataa aggaagtgga tttaaactaa aaaatgatat taaaaaagcc aataaagaat
     7621 ttaaaatatt taaagaaatt tttaataatt ttgcgaaatt aagtccaaat atcattaaaa
     7681 taatctctaa aaataagcaa gcctttttaa aagaacttcc aagaatacaa aatatattaa
     7741 aaattcatca agattatcaa cctatacttg ataatatttt ccataatttt aattatttta
     7801 tacaaaattt taatcttata gaagaatggc tattatcaaa tgattttaat gaaaaatata
     7861 aaaaagaaaa tcatccttat ccttcattac ttgatcctaa aaaactaaat gatgaaaatg
     7921 aaaaaattaa ttataaaaat attccagctg aacttgcttg ggagatgaat ttacctttac
     7981 ctgatgggta taagtttaat ctatttactt ttggattaac tggacatagt atcctgttaa
     8041 gagctttagt ttatcatggt gttagattgc aatggtattc caatgactat aaaatgttgt
     8101 atttggataa ttttgagcat agttatgatt gcatacatat acttttttta gatagaaatg
     8161 attttaataa gagttttaaa tatataaatt tacttccacg aatcactact atatttttaa
     8221 ttcgagatcc tatatcaaaa tttaaaacag gattaaatca tggtggatat aaaaaaggtt
     8281 gtaatagtta cgatatagtc gatagtaata tccctatcca aaaaatatta gatagggtgc
     8341 aatatccttt ttttgagcaa ataacattag aacatatgtt aaattattgg ataaatcatg
     8401 gtgtatggcg gtatgattct atcattaaaa atatatgcaa agagaaaata tattttttgg
     8461 atatggagga gcttatgcca aataaaattt tatcaacttt tgttgattta aagtttaaat
     8521 ttaaattaaa taatatagat aatttggaaa taatgcaaaa tat
//
LOCUS       DAZBIH010000061         8379 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.062, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000061 DAZBIH010000000
VERSION     DAZBIH010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8379
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.062"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            94..1539
                     /gene="pycA"
                     /locus_tag="ACHFOB_001181"
     CDS             94..1539
                     /gene="pycA"
                     /locus_tag="ACHFOB_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase subunit A"
                     /protein_id="HFN5799988.1"
                     /translation="MNQIHKILIANRAEIAVRVIRACRDLHIKSVAVFTEPDRECLHV
                     KIADEAYRIGTDAIRGYLDVARIVEIAKACGADAIHPGYGFLSENYEFAKACEDAGII
                     FIGPKSEVIHKMGNKNIARKLMAKNGIPIVPGTEKLNSYSMEEIKIFAEKIGYPVILK
                     ASGGGGGRGIRVVHKEQDLENAFESCKREALTYFNNDEVFMEKYVVNPRHIEFQILGD
                     NYGNIIHLCERDCSIQRRHQKVIEIAPCPGISDNLRKTMGVTAVAAAKAVGYTNAGTI
                     EFLLDDYNRFYFMEMNTRIQVEHPITEEITGIDLIVRQIRIAAGEILDLEQSDIKPRG
                     FAIEARITAENVWKNFIPSPGKIGEYYPALGPSVRVDSHIYKDYTVPPYYDSMLAKLI
                     IKATSYDLAVNKLERALKEFVIDDIRTTIPFLIAITKTREFRRGYLDTSFIETHMQEL
                     LEKTEDRHQENKEEVIAAIAATLKKIRESRE"
     gene            1543..1794
                     /locus_tag="ACHFOB_001182"
     CDS             1543..1794
                     /locus_tag="ACHFOB_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799989.1"
                     /translation="MDFLDSLKSIKKEMQANTNTSKLAKKSSKSGASVKNLEKLAKDI
                     REKNQETNIDKEMQEIFLKQEKLQDEFSEFIKNTDIKKI"
     gene            1794..2513
                     /gene="ate"
                     /locus_tag="ACHFOB_001183"
     CDS             1794..2513
                     /gene="ate"
                     /locus_tag="ACHFOB_001183"
                     /EC_number="2.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginyltransferase"
                     /protein_id="HFN5799990.1"
                     /translation="MLEIGFCTLEDQCPYLKDKRSRIEYKYIENCSKEINNELIKRGW
                     RRFGRYFSRPICKDCDECLSLRILVNEYNFSRSERRVVNKNINTKVILRTPNLSNEHL
                     FLYDKYHRFMEEKKNWKRYDLSFKQYYNLYVDGFMNFGYELAFYIEDKLVCVDLIDIL
                     EDGISSIYCFYDPDFSYFSLGKFSLLNEIQIAKKMNLDYIYLGYFVKKCQSLSYKADY
                     TPNEILKGTKELFENEVLWEK"
     gene            2514..3320
                     /locus_tag="ACHFOB_001184"
     CDS             2514..3320
                     /locus_tag="ACHFOB_001184"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HFN5799991.1"
                     /translation="MQIVQTLETINVNTDDISVFQYFKDLITKNFTKVIGRKNKIFSF
                     FEENEIPQRRYFLKVLDQKYRKSTNEGIENLQDAHFKTFRLIFEQNNMLKPMLFIKID
                     FVAGRILMKLSSNEKLFITYIRNYFQDHNIEYNEMTNILILEYKNENTLELFEAFADE
                     SEHLKYCVNFEVDREEYKKFRQNIHNKENMKWKFNALAKLFSNYFNTLECTPQNDLSE
                     IRQKYLILVKLYHPDFHQGKSAIEKAYAREQFEKIQIAYDNLKALYKNNT"
     gene            complement(3345..6362)
                     /gene="cmeF"
                     /locus_tag="ACHFOB_001185"
     CDS             complement(3345..6362)
                     /gene="cmeF"
                     /locus_tag="ACHFOB_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeF"
                     /protein_id="HFN5799992.1"
                     /translation="MFKLAINRPITVLMFFLALMIFGLISAFSMSVNLFPNVSIPLIK
                     ITSKINGDLNFVESKVTKEIENALSEIDGVKTITSAAYDNFSVSVVEFKLGKNLEVAA
                     NDVRDKIGTLSLPSKPEIEKISSDSGSAISLFLYSKDKIQLMREINDKIKPFLQRVEG
                     VGKIEAKGFLEPQIRIELKPNELRKYNLNALDVANIIKSQNFKQALGELNNNQDNYII
                     KGYFEATNLEELSNLRIKTGVFLSDIANISSLYEDEKQSALYEGKEGVLLELGKITNY
                     NTLEMIKNVKNALPILEKQIPKDISINMLYDKSLNIHKHLSQVIFDMVLGIFLTLVIV
                     FLFLRNLSATLIACIAIPTSIISTFFIIDLLGYDLNRLTFIALTLSIGIFIDDAIVVI
                     ENIAKKLKTYPPLQAAFLGINEIGFSVLSISIVLLCVFIPISYMNSISGLFFNALGIS
                     VASGIVISFLVSVFLIPSIGARFLNPKENKFYEKTEAFFEKIEQKYENLLYKILQNKV
                     KFILATLVFIGLSFALATRIGLDFLPMEDDSEIQVLLESKKDLSLEAMKEKSLNLLEK
                     IKNDSNVKYAFLLVGYDDAKDATKAKIYVKLKNLDERNLRQTAIVSLYRQKFQDESLK
                     IKILELPKIEGAGIDDPVQFLILGDDLNTLKEAASQAKEILGTNARIVDISDNANATK
                     DEVALHINKEKAKLLDVNPQYIAGVLGYSFSQLSVGSMDRGNSKDDIILSFAPEFKKD
                     IEALKRISIKNNQGINLELSSVVDFIYSKDLKTINRYNKNRSVKITAGVNDLSLGAVQ
                     KLLLDNMDKILNNNPSLSYAFSGFINLLGETVQGFAMAVALAFVLIYLVLAALYESFI
                     LPLIIMITMPLAFGGASIGLFITGHNFSLFVLIAIILLFGMVGKNAILLVDVANKKCH
                     EGLDPDKALLIAGKSRLRAILMTTFAMIFAMLPLALSRGAGYEANSPMAIAIIFGLIS
                     STLLTLLVVPALFKFCFKLDSKLRKIYEREKLN"
     gene            complement(6365..7105)
                     /gene="cmeE"
                     /locus_tag="ACHFOB_001186"
     CDS             complement(6365..7105)
                     /gene="cmeE"
                     /locus_tag="ACHFOB_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeE"
                     /protein_id="HFN5799993.1"
                     /translation="MKKILFLLLVFNCAFGEEIYASFNVEASKQSKLALESIGLVQKI
                     PVEIGQKVSKGELLLALDQESEKIALQNAQNSYQLALVEYENTKSRMQKIKAVENVID
                     KQSYEDMKAKFDAANLNLNKAKINIAYYNNIMAKKELRAPYDAIIANKFIQVGEGVGG
                     VAQPLIEIFSYPQSKLILSFDEKYKDKVRLGDDFFYKIDQNGTELKGKISLIYPSIEV
                     KTRKIYAEVQTTNLTPGLFGEGRIITKD"
     gene            complement(7102..8376)
                     /gene="cmeD"
                     /locus_tag="ACHFOB_001187"
     CDS             complement(7102..8376)
                     /gene="cmeD"
                     /locus_tag="ACHFOB_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter outer membrane
                     subunit CmeD"
                     /protein_id="HFN5799994.1"
                     /translation="MLEKYLKSAIFLALYPLAMLASNLHEFIALSQNNESYLIKQMQS
                     EQANLDKEQAFRNYLPSLSLNSAYVANNKDRFIIDPQESLFAKVSLNFLLFDGGAREA
                     NLRALESREKLSFLDKEQNKNYLALNAITLYFNTLSLEKILLANQQKVSFLKSTFKRL
                     QKFYDAGLSSKDELESIKAKYHLSLLELSQNELKLANIQKEIKILSDTDFKVQGNAFL
                     ENPQQEKSQNYEVMIAKEQINLAKESVNLAKAEYFPKFYIQDNFNFYKNNYNPKVPAP
                     FANLADQFLEKYSQGNQFILGMEWKIFDFNARAKEVEKERLNVQIANANARFSERKNK
                     EELNYLDKSLKVLQEQILALNLSLNAANLAFESVDKKYQAGLVSYVEYLQALEAKFKA
                     QSDLELAKNEFEITKANYYFNAGIDLNSKVKE"
BASE COUNT         2897 a         1198 c         1329 g         2955 t
ORIGIN      
        1 tattataact aaaataaatt aaattttttg ctaagttttt gtaaggaaaa tttgctaaaa
       61 ttaacaataa aaatataaca aaaaaggcaa attatgaatc aaatccataa aattctcata
      121 gcaaatagag ctgaaatagc tgttagagta atccgtgctt gtagagattt gcatattaaa
      181 agtgttgcag tttttacaga gcctgatcgt gaatgtttgc atgtaaaaat cgcagatgag
      241 gcttatcgca taggaacgga tgctataaga ggatatttag atgttgctcg tattgttgag
      301 attgctaagg cttgtggtgc tgatgcgatt catcctggtt atggattttt aagtgagaat
      361 tacgaatttg ctaaggcttg tgaagatgct ggaattattt ttataggtcc aaaatctgaa
      421 gtaatccata agatgggaaa taaaaatatc gctcgtaagt taatggctaa aaatggcata
      481 cctattgttc cagggactga aaaattgaat tcctatagca tggaagaaat taaaattttt
      541 gctgagaaga ttggttatcc tgttatttta aaagcttcag gtggtggagg tggacgcgga
      601 attcgcgttg ttcataaaga acaagatctt gaaaatgcct ttgaatcttg caaaagagaa
      661 gctttaacat actttaataa tgatgaagta tttatggaaa aatatgtagt taatcccaga
      721 catatagaat ttcaaatttt aggagataac tacggaaata ttatccatct ttgtgaaagg
      781 gattgttcta ttcaaagaag acatcaaaag gtaattgaga tagcaccttg ccctggaatt
      841 tcagataatc ttagaaaaac catgggtgtt acagctgtgg cagctgctaa ggctgtaggt
      901 tatacaaatg ctggaactat agagtttttg cttgatgatt ataatcgctt ttattttatg
      961 gaaatgaata caagaattca agttgagcat ccaattactg aagaaattac aggtattgat
     1021 cttattgtaa gacaaattcg tattgcagca ggagaaattt tggacttaga acaaagcgat
     1081 attaaaccta ggggttttgc tattgaagct agaattactg ctgaaaatgt atggaaaaat
     1141 tttattccaa gtcctggaaa aataggagaa tactacccag ctcttggacc atctgttaga
     1201 gttgatagtc atatttataa agactatact gtgccgcctt attatgattc catgcttgca
     1261 aagcttatta ttaaagcaac aagttatgat ttagcggtta ataaacttga gcgtgctttg
     1321 aaggaatttg tgattgatga tattagaaca acaataccat ttttaattgc cattacaaaa
     1381 acaagagaat ttagaagggg gtatttagac acctctttca tagagacaca tatgcaagaa
     1441 ttattagaaa aaacagaaga tcgtcatcaa gaaaataaag aagaagttat agctgcaata
     1501 gctgctacgc ttaaaaaaat acgagaaagt agggaataat agatggattt tttagacagt
     1561 cttaaaagta ttaaaaaaga aatgcaagct aacaccaata cttcaaaatt agcgaagaaa
     1621 tcaagcaaga gtggagcaag tgtaaaaaat ttagaaaaac tagctaaaga tattcgcgaa
     1681 aaaaatcaag aaacaaacat agataaggaa atgcaagaaa ttttcttaaa gcaagaaaaa
     1741 ctacaggatg aattttccga atttattaaa aatacagata ttaagaaaat ttaatgcttg
     1801 agattggttt ttgtactctt gaagatcagt gtccttactt aaaggataaa cgttcaagaa
     1861 tagagtataa atacattgaa aattgctcta aagaaatcaa taatgagcta ataaaacgag
     1921 gttggcgtcg ttttggtagg tatttttcac gccctatttg taaagattgt gatgaatgtt
     1981 taagtcttag aattttagtt aatgaatata atttttcaag aagtgaaaga agggttgtaa
     2041 ataaaaatat taacaccaaa gttatactta gaacacccaa tttaagcaat gaacatttgt
     2101 ttttatatga taaataccat cgttttatgg aagaaaaaaa gaactggaag cgttatgatt
     2161 taagctttaa acagtattat aatctttatg tcgatggttt tatgaatttt ggatatgagc
     2221 ttgcatttta tatagaagat aagctcgttt gtgttgattt gattgatatt ttagaggatg
     2281 gaatttcaag catttattgt ttttatgatc ctgatttttc gtatttttct ttgggtaaat
     2341 tttctttgct taatgaaata caaatagcta aaaaaatgaa cttagattat atttatcttg
     2401 ggtattttgt aaaaaagtgt caatctttat cttataaagc cgattataca cccaatgaaa
     2461 ttttaaaagg cactaaagag ctttttgaaa atgaggtttt atgggagaaa tagatgcaaa
     2521 tcgtgcaaac tttagaaact atcaatgtta atacagatga tattagcgta tttcagtatt
     2581 ttaaagactt gattaccaaa aatttcacaa aggtcatagg acgaaaaaat aaaatttttt
     2641 ctttttttga agaaaatgaa attccacagc gccgttattt cttaaaagtt ttagatcaaa
     2701 aatatcgcaa aagcacaaat gaaggtatag agaatttaca agatgctcat tttaaaactt
     2761 ttagattaat ttttgagcaa aataatatgc ttaagcctat gttgtttatc aagattgatt
     2821 ttgttgcggg tagaattttg atgaagttaa gctctaatga aaaattattt attacttata
     2881 taagaaatta ttttcaagat cataatatag aatataatga aatgacaaat attctaattt
     2941 tagaatataa aaatgagaat acccttgaac tttttgaagc ttttgcagat gagagcgagc
     3001 atttaaaata ttgcgtgaat tttgaagttg accgcgaaga gtataaaaaa tttcgccaaa
     3061 atattcacaa taaagaaaat atgaaatgga aatttaatgc tttagctaag ctttttagta
     3121 attattttaa tactttagaa tgcactccgc aaaatgatct tagtgaaatc agacaaaaat
     3181 atttgatttt ggtaaaactt tatcatcctg attttcatca aggaaaaagt gcaatagaaa
     3241 aagcttacgc aagagaacag tttgaaaaaa tacaaatcgc ctatgataac ttaaaagcac
     3301 tttataagaa taatacttaa aaaaaattaa attaatcatt ttggttaatt taatttttct
     3361 ctctcataaa tttttcttaa tttgctatct agtttaaaac aaaatttaaa aagtgcaggt
     3421 actacgagta aggtaagcaa agtcgaactt ataagtccaa agataatggc tattgccata
     3481 ggagaattag cttcatagcc cgcacccctt gaaagagcaa gtgggagcat agcaaaaatc
     3541 atagcaaaag ttgtcatcaa tatagccctt aagcgcgatt ttccagcgat taaaagagct
     3601 ttatcgggat ctaaaccttc atggcatttt ttattagcta catctacgag taaaatagca
     3661 tttttcccca ccataccaaa aagtaagatg atggcaataa gtacaaaaag tgaaaaatta
     3721 tgccctgtga taaaaagccc tatagaagct ccgccaaagg ctaaaggcat ggttatcatg
     3781 atgattaaag gcagaataaa actttcataa agtgcggcta aaacaagata aattaaaaca
     3841 aaagcaagtg ctactgccat agcaaaacct tgcacggttt cacctaaaag attgataaag
     3901 cctgaaaaag catagctaag acttggattg ttatttaaaa ttttatccat attatctagt
     3961 aaaagttttt gcaccgctcc taaggaaaga tcattcactc cagctgtgat tttcacagag
     4021 cggtttttat tgtaacgatt gatagttttt aaatctttac tgtatataaa atccaccacg
     4081 cttgaaagtt ctaaatttat accttggttg tttttaatgc taatgcgctt taaagcttct
     4141 atgtcttttt taaattctgg agcaaaactt aggataatat catcttttga attgcctcta
     4201 tccatgcttc ctacgctaag ttgcgagaaa gaatacccta aaaccccagc gatatattga
     4261 ggattgacat ctaaaagttt ggctttttct ttgttgatgt gtaaggctac ttcatctttt
     4321 gtagcattag cattatcact tatatctaca atgcgtgcat tagtgcctaa aatttctttt
     4381 gcctgagaag cagcttcttt tagagtgttt aaatcatctc ctaagattaa aaattgcacg
     4441 ggatcatcaa tgcctgcacc ctctatcttt ggaagttcta aaattttgat ttttaaactt
     4501 tcatcttgaa atttttgacg atataaactt actatggcag tttgtcttaa atttctttcg
     4561 tctaaatttt taagtttaac ataaatttta gcctttgtag catctttggc atcatcatag
     4621 cctacaagta aaaaagcgta tttgacattg ctatcatttt tgattttttc aagcaaattt
     4681 aaactttttt ctttcatggc ttctaaactt aaatcctttt tgctttcaag caaaacttga
     4741 atttcactat catcttccat aggtaaaaaa tcaagcccta tgcgagtggc taaagcaaaa
     4801 gaaagcccta taaaaacaag agtggctagg ataaatttta ctttattttg taaaatttta
     4861 tagagtaaat tttcatactt ttgctctatt ttttcaaaaa aagcttctgt tttttcataa
     4921 aacttgtttt cttttggatt taaaaatctt gccccaatac taggtattaa aaatacagaa
     4981 accaaaaagc ttataactat cccacttgca acgcttatgc ctaaggcatt gaaaaaaagc
     5041 cctgatatag agttcatata agaaataggg ataaaaacac aaagtaaaac tatacttatg
     5101 cttaaaacac taaaacctat ttcattgata cctaaaaaag cagcttgtaa aggcggataa
     5161 gtttttagtt ttttagcaat attttcaatc actactatag catcatcgat aaaaattcct
     5221 atgcttaagg ttaaagctat aaaagttaag cggtttaaat catagcctaa aagatcgata
     5281 ataaaaaaag ttgaaatgat agaagtaggt atagctatgc aagcaatgag agttgcactt
     5341 aaatttctta aaaataaaaa cacgataaca agggttagaa aaatccccaa aaccatatca
     5401 aaaatcactt gagaaaggtg cttgtggata tttaagcttt tatcataaag catattaatg
     5461 cttatatctt ttggaatttg tttttctaaa ataggcaagg catttttgac atttttaatc
     5521 atttcaaggg tgttataatt tgtgattttt ccgagttcta aaagcacccc ttctttacct
     5581 tcgtataaag cactttgttt ttcatcttca taaaggcttg aaatattagc aatatcactt
     5641 aaaaataccc ctgtttttat gcgaagatta ctaagttctt ctaaatttgt ggcttcaaaa
     5701 tagcctttga tgatatagtt atcttgattg ttgttaagtt cgcctagggc ttgtttaaaa
     5761 ttttgacttt tgatgatatt tgctacatca agggcgttaa gattgtattt tctaagttcg
     5821 tttggtttta attctatgcg aatttggggt tctaaaaacc ccttagcttc gattttacct
     5881 actccttcaa ctctttgcaa aaaaggtttt attttatcat tgatttcacg catgagttgt
     5941 attttatctt tagaatataa aaaaagcgaa atagcagaac cagaatctga actgattttt
     6001 tcaatttcag gcttagaagg taggcttaaa gttcctattt tatcacgcac atcattagca
     6061 gctacttcaa gatttttacc cagtttaaac tccactacac tcacactaaa attatcatac
     6121 gcagctgagg ttatggtctt tactccatcg atttcactta aagcattttc tatttcttta
     6181 gtgacttttg attctacgaa atttaaatcc ccatttatct tgcttgtgat ttttataaga
     6241 ggtatggaaa cattaggaaa taaatttaca ctcatgctaa aagcagagat tagcccaaaa
     6301 atcataagag ctaagaaaaa cattagcacg gtaataggtc ggtttatagc tagtttaaac
     6361 atttttaatc tttagtgatg attctacctt caccaaaaag ccctggtgtt agatttgtgg
     6421 tttgcacttc agcataaatt tttcttgttt ttacttctat acttggataa ataaggctga
     6481 tttttccttt caattctgta ccattttgat cgattttata aaagaaatca tcgcctaatc
     6541 taactttatc tttatatttt tcatcaaaac ttaaaatcag tttgctttgt ggataggaaa
     6601 aaatttctat taaaggttga gctactcctc ctactccttc gcccacttgt ataaatttgt
     6661 ttgcgataat agcatcataa ggtgcgcgta attctttttt tgccatgata ttgttataat
     6721 aagctatatt gatttttgct ttgtttaaat ttaaattagc agcatcaaac ttagctttca
     6781 tatcttcata gctttgtttg tctataacat tttctacagc tttgattttt tgcatcctac
     6841 ttttggtatt ttcgtattct acaagggcaa gttgataaga attttgagca ttttgaagag
     6901 ctattttttc actttcttga tcaagagcaa gtaaaagttc tcctttgctg actttttgtc
     6961 caatttctac aggaattttt tgaaccaaac ctatgctttc aagggcaagt ttgctttgtt
     7021 ttgatgcttc tacattgaaa cttgcgtaaa tttcttcgcc aaaggcgcaa ttaaaaacaa
     7081 gaagtaaaaa tagaattttt ttcattcttt aacctttgaa ttaagatcta tacccgcatt
     7141 aaaataataa tttgctttag taatttcaaa ttcattttta gcaagctcta aatcgctttg
     7201 tgctttaaat ttagcctcta aagcttgaag atattctaca taagaaacaa gtcctgcttg
     7261 gtatttttta tctacacttt caaaagctaa atttgcagca tttaagctaa gattaagagc
     7321 taaaatttgt tcttgtaaaa cttttaaact tttgtctaaa taatttaatt cttctttatt
     7381 ttttctctcg ctaaatcttg catttgcatt ggctatttga acatttaaac gctctttttc
     7441 aacttcttta gcccttgcat tgaaatcaaa aattttccat tccataccta aaataaattg
     7501 attaccttga gaatattttt ctaagaattg atccgctaaa tttgcaaaag gagctggaac
     7561 ttttggatta taattgtttt tataaaagtt aaaattatct tgaatataaa attttggaaa
     7621 atattcagct tttgctaaat ttacactttc tttagcaaga ttgatttgtt ctttagctat
     7681 cattacttca tagttttgac ttttttcttg ttgcggattt tctaaaaaag cattcccttg
     7741 cactttaaaa tctgtatcgc ttaaaatttt aatctctttt tgtatattgg caagttttaa
     7801 ttcattttga ctgagctcta ataagcttaa atggtattta gccttaatgc tttcaagttc
     7861 atctttagag ctaagtcctg cgtcgtaaaa tttttgcaat cttttaaaag ttgattttaa
     7921 aaaagatact ttttgttgat tggctagtaa aattttttca agacttaagg tgttaaaata
     7981 aagtgtgatt gcatttaggg caaggtaatt tttattttgt tctttgtcta aaaagcttaa
     8041 tttttctctg ctttctaaag ctcttaaatt agcctctcta gcacccccat caaaaagcaa
     8101 aaaattaaga gaaactttag caaataaact ttcttgtgga tcgataatga agcgatcttt
     8161 attgttggct acataagctg agtttagact aagagagggt aggtaatttc taaaagcttg
     8221 ttctttgtct aaatttgctt gttcgctttg catttgctta atgagatagg attcattatt
     8281 ttgacttagt gctataaatt cgtgcaaatt agaagctaac attgctaagg gataaagagc
     8341 taaaaatata gctgatttta aatatttttc aagcatttg
//
LOCUS       DAZBIH010000062         8372 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.063, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000062 DAZBIH010000000
VERSION     DAZBIH010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8372)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8372)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8372
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.063"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            13..438
                     /gene="exbB"
                     /locus_tag="ACHFOB_001188"
     CDS             13..438
                     /gene="exbB"
                     /locus_tag="ACHFOB_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015078 - proton transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-system energizer ExbB"
                     /protein_id="HFN5799995.1"
                     /translation="MEFLKDYIDLIIFLILGIMAFIAFWCVIERMLFFRKINFKNYEN
                     QEQFDDAISENLTTIYIIYSNAPYIGLLGTVIGIMVTFYEMGLAGNIDVKSIVVGLSL
                     ALKATALGLLVAIPALMAYNALLRKVSLLSNAYKANKNA"
     gene            431..820
                     /gene="exbD"
                     /locus_tag="ACHFOB_001189"
     CDS             431..820
                     /gene="exbD"
                     /locus_tag="ACHFOB_001189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB system transport protein ExbD"
                     /protein_id="HFN5799996.1"
                     /translation="MLKLPKNEGLNIVPFIDIMLVLLAIVLSISTFIAYGKIQISLPS
                     SENATNISNNKKKLLITIDEKNTFYLNDKLADLNEVKNAIFSLDKKTIVELKSDKNAK
                     FESFVKIIDFLKAKEHENFQILTEKNK"
     gene            817..1500
                     /locus_tag="ACHFOB_001190"
     CDS             817..1500
                     /locus_tag="ACHFOB_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015291 - secondary active transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB family protein"
                     /protein_id="HFN5799997.1"
                     /translation="MKTLFLNHKYQASYITFIVFIPLLFVIFHSNDFFKMEIKNEDSF
                     SLAIKQFTQTNPTNETKPTESIIEPIKPKPQPKVIKKTPEKIQKKVKKIPPHPIPNKT
                     PIAPTQEVKTFAKTTDTNVKPKITQLTQGKDNHPVLKEIQKAIQQAQFYPRQAKKMRM
                     QGTVKVEFLWKENKTLADLKIIESSGYDLLDKSALESIRKASLNFPHYNGDLRITLPI
                     IYDFKILRG"
     gene            complement(1520..2389)
                     /locus_tag="ACHFOB_001191"
     CDS             complement(1520..2389)
                     /locus_tag="ACHFOB_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799998.1"
                     /translation="MKIDTSTSLTHSLTNNVDKKELSVLKKEDQDKIPVQDLSSLNSD
                     SVKVVFENKQGELIALNLSNENYSSLQKNFSSYTNYVARNDGSIRLNGEANQFVSNWF
                     ESVKDNFGSLNSNLNNKQQSVKLNFNTSTLQQSMQNLGFKTSDEKISDDANIEEKLNF
                     FIDKDVNKDGKVDDSDVKEPTMREILSDIKEASGGGANAMKTIDPQKINKKDDRENNI
                     KEKEDEDLLQKAQEKGLSALSADEQAKLEASNPEEFEKLKQKSLQELSQNLSKDFKDK
                     IENQEAQIVDKRV"
     gene            complement(2393..2554)
                     /locus_tag="ACHFOB_001192"
     CDS             complement(2393..2554)
                     /locus_tag="ACHFOB_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5799999.1"
                     /translation="MLKIILVLSILSSFAFANSCANYEQELKKCNSLKNSHERKMCRL
                     GLFAKCKKG"
     gene            2649..3632
                     /locus_tag="ACHFOB_001193"
     CDS             2649..3632
                     /locus_tag="ACHFOB_001193"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HFN5800000.1"
                     /translation="MKALALFSGGLDSMLAMKLITAQGIEVKALNINIGFGSTSDKSE
                     IMKKRAAMVGADFEMIDVRNSYLQEVLFNPQYGYGKHFNPCIDCHAFMFKTALAMLKE
                     ENASFIITGEVLGQRPMSQRSDAMAKVKKLALDEEDLILRPMCAKNLPLTKPEREGWV
                     DREKLEGISGRSRKRQLELAVKFGLEDFESPGGGCLLTLDSFAKKIRDFIEFDKDMQV
                     NDAQLLKYGRHLRLPNGAKMIIGRNELENTLLKGLKTPKYEVIELGDLIGAYSLVDEK
                     ISEKDLELALKIALTYTKHEVGKSYELKFKNQAYTSIAFENKADINQFFIS"
     gene            complement(3719..4807)
                     /gene="aroC"
                     /locus_tag="ACHFOB_001194"
     CDS             complement(3719..4807)
                     /gene="aroC"
                     /locus_tag="ACHFOB_001194"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004107 - chorismate synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HFN5800001.1"
                     /translation="MNTFGTRLKFTSFGESHGVAVGCIIDGMPAGVKFDEEFLQNELD
                     KRKGGSKFATPRKESDKAQVLSGVFEGYTTGHPIAIVVFNENAHSKDYDNLKDLFRPA
                     HADFTYFYKYGIRDHRGGGRSSARESVARVAGGAVAAMLLCEFGICVQSGVFGIGTFV
                     SNLKEEEFDFEFAKKSEIFCLDPKLESDFKNEILNARNSKDSVGAAVFTKVSGMLVGL
                     GEVLYDKLDSKLAHALMGVNAVKAVEIGEGINASKMRGSCNNDALKDGKFLSNHSGGI
                     LGGISNGENLILKTYFKPTPSIFAKQESIDKFGNNLEFELKGRHDPCVGVRGSVVANA
                     MVRLVLADCLLLNASANLNNLKNAYGLK"
     gene            complement(4807..5481)
                     /gene="rnc"
                     /locus_tag="ACHFOB_001195"
     CDS             complement(4807..5481)
                     /gene="rnc"
                     /locus_tag="ACHFOB_001195"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0004525 - ribonuclease III activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HFN5800002.1"
                     /translation="MKNIEKLERSLTYEFKDKNLLIHALTHKSFKKSYNNERLEFLGD
                     AVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFIFMSVAEENN
                     GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQIDAKILIKDYKTKLQ
                     EITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIAL
                     EKLGAL"
     gene            complement(5468..5908)
                     /gene="rnhA"
                     /locus_tag="ACHFOB_001196"
     CDS             complement(5468..5908)
                     /gene="rnhA"
                     /locus_tag="ACHFOB_001196"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI"
                     /protein_id="HFN5800003.1"
                     /translation="MKHIEIYTDGSCLNNPGFGGWAYILRYKEYQKEGFGAEANTTNN
                     RMELMAIIESLKALKEPCEISLFTDSNLMVQSINEWLEGWIKKDFKGKKNIDLWKEYI
                     KVAKSHKIKAFWVKAHNGHLENERCDTLAREAALKIARENDEKH"
     gene            complement(5895..6881)
                     /locus_tag="ACHFOB_001197"
     CDS             complement(5895..6881)
                     /locus_tag="ACHFOB_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDC27 family protein"
                     /protein_id="HFN5800004.1"
                     /translation="MDFFFVEYRDPLVGLIILTILVFVVAVANYIWKIFASKDEEQKL
                     EKFIKKFEMDNAHKELLRNSSLSFGNLSFLAEIFTKSGEFEKATQIYLIALEKCKDKQ
                     EREFIFLSLAKVYFKAGFLERAKEVLLQALKLRPRNIQALKLLKIVYLKLRSYKENLE
                     LLECLFELNEDVQKEHDFIKALELCTFNITDEEKKKKLLEFKIEDNPMLGRLVFEKYH
                     MFLGQNFFDICDLLYRENEAFNLENQDFLEFFYALGKISKHDDTHQFVFKNSNFKMLK
                     ILKDNSFNAGLEFSYRCSECKNVMPLFFYHCPVCYEFNTCKIIYEVKNNETH"
     gene            6951..>8372
                     /gene="dnaG"
                     /locus_tag="ACHFOB_001198"
     CDS             6951..>8372
                     /gene="dnaG"
                     /locus_tag="ACHFOB_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HFN5800005.1"
                     /translation="MITKESIENLSQRLNIVDIIENYIEVKKQGSSFVCICPFHADKN
                     PSMHINPTKGFYHCFACKAGGDAFKFVMDYEKLSFADAVEKVASLSNFTLSYTKEKQE
                     NKKELKSILPSLNAYFKDNLKHHKEVLTYLYQRALNDKDIAKFELGFAGASEDSIRLL
                     RNQKIPLEDAMSVGALKKDENNEFYASFIWRITFPIYDHKDLLVGFGGRTLNPNVPAK
                     YVNSPQNILFDKSRIFYAFNIAKENIAKKKEIIVCEGYMDAIAFHKAGFNNAVAVLGT
                     ALTEHHLPLIRRYDAKVILCFDNDEAGLKAATRSAFLLSTNKIDGKVAILQGGKDPAE
                     LVAKNESTKLHDILDEGIELGEFYIRRLISTHSIISALDKQKALETIQKFTFNLEPLV
                     ANSYTSLVSNLLKVDEKFIVLSQNSKKTIHTPLISQNKYNFPKEKIHIAELELIAFLK
                     QHPDICNDFKQISDSVCFKHKILL"
BASE COUNT         3005 a         1439 c         1077 g         2851 t
ORIGIN      
        1 ttggagaaaa atgtggaatt tttaaaagat tacatcgact taattatctt tttaattcta
       61 ggaattatgg catttatagc tttttggtgt gtcatagaaa gaatgctatt ttttagaaaa
      121 attaacttta aaaattatga gaatcaagag caatttgatg atgcaattag tgaaaattta
      181 accactatat atatcattta ttctaatgcc ccttatatag gacttttagg cactgtaata
      241 ggcataatgg ttacatttta cgaaatgggc ttggcgggca atatagatgt caaatctata
      301 gttgtaggac tttctttggc tcttaaagct acagctttgg gacttttggt tgctattcct
      361 gctttaatgg cttataatgc cttacttaga aaagtttctc tattaagcaa tgcttataag
      421 gcaaataaaa atgcttaaac taccaaaaaa tgaaggttta aatatagttc catttataga
      481 cattatgctt gttttgcttg ctatagtact tagcatttca acctttattg cgtatggaaa
      541 aattcaaatc tcacttcctt caagtgaaaa tgctaccaat ataagcaata ataaaaaaaa
      601 acttcttata accatagacg aaaaaaatac tttttattta aatgataaat tagctgattt
      661 aaatgaagtt aaaaatgcta ttttttcact tgataaaaaa accatagtag aactaaaaag
      721 cgataaaaat gccaaatttg aaagctttgt aaaaattata gattttttaa aagccaaaga
      781 acatgaaaat tttcagattc ttactgagaa aaacaaatga aaactttatt tttaaatcat
      841 aaataccaag cttcttatat aacttttata gtctttatac ctttgctttt tgtcattttt
      901 cactcaaatg acttttttaa aatggaaatt aaaaatgaag attctttttc tttagcaata
      961 aaacaattta cccaaactaa tccaacaaat gagactaaac caacagaatc cattatagaa
     1021 cctatcaaac caaaacctca gccaaaagtt attaaaaaaa ctcctgaaaa aattcaaaaa
     1081 aaggtaaaaa aaatacctcc acacccaata ccaaataaaa ccccaatagc accaactcaa
     1141 gaagttaaaa cttttgcaaa aacaactgat acaaatgtca aacctaagat cactcaatta
     1201 acacaaggaa aagataatca ccctgtatta aaagaaatcc aaaaagctat acaacaagca
     1261 caattttatc caaggcaagc aaaaaaaatg cgtatgcaag gaactgtaaa agtagaattt
     1321 ttatggaaag aaaacaaaac tttagcagat ttaaaaatca tcgaaagctc gggatatgat
     1381 ttgttagata aaagtgcttt agaaagcata agaaaagctt ctttaaattt tccacactat
     1441 aacggagatt taagaattac actacctatt atatatgatt ttaaaatctt aagaggatga
     1501 aattataatt ttataaaaac tacactctct tatctacaat ttgcgcttct tgattttcaa
     1561 ttttatcttt aaaatcttta cttaaattct gacttaattc ttgcaaagat ttttgcttca
     1621 gtttttcaaa ttcttcagga ttactagcct caagctttgc ctgctcatca gcacttaaag
     1681 cacttaaacc tttttcttga gctttttgaa gcaaatcttc gtcttctttt tctttgatat
     1741 tattttccct atcatctttt ttattgattt tttgcggatc tatggttttc atagcattag
     1801 ctccaccacc tgatgcttct ttaatgtcgc ttaaaatttc tctcatggta ggttctttaa
     1861 catcactatc atcaacttta ccatctttat ttacatcttt atcaataaaa aaatttaatt
     1921 tttcttctat atttgcatca tcagatattt tttcatcgct tgttttaaag cctaaatttt
     1981 gcatactttg ttgaagagta cttgtattaa aatttaattt tacactttgt tgtttattat
     2041 ttaaatttga atttaaagaa ccaaaattat cttttacact ttcaaaccaa tttgaaacaa
     2101 attggtttgc ttcgccatta agccttatac taccatcatt tctagcaaca taattcgtat
     2161 aagaactgaa atttttttgt aaactactat aattctcatt gcttaaattt aaagctataa
     2221 gttcaccttg cttattttca aaaacaacct taacactatc gctatttaaa ctcgaaagat
     2281 cttgcacggg aattttatct tgatcttctt tttttaatac gctaagctct tttttatcaa
     2341 cattattagt taaagaatga gttaaactag tagaagtatc gattttcatt attcatcctt
     2401 ttttacattt tgcaaataaa cctaaacgac acatttttct ctcatgtgaa ttttttaaag
     2461 aattacactt tttaagttct tgctcgtagt tagcacaaga atttgcaaaa gcaaaagaac
     2521 tcaaaatgct taaaaccaaa attattttta acactttcca atccttattt taaagatttt
     2581 ttagttaaaa ttataccttt tataatcgac aaaatcttaa aaaactttat aatctcagaa
     2641 aggaatcaat gaaagcatta gctcttttta gcggtgggct tgatagtatg cttgcaatga
     2701 aactcatcac tgcacaaggc atagaagtta aagctctaaa tatcaacata ggttttggaa
     2761 gcacaagtga taaaagcgaa atcatgaaaa agcgtgcggc aatggtaggt gcggattttg
     2821 aaatgataga tgtaagaaat tcctatcttc aagaagtgct ttttaatcca caatatggct
     2881 atggcaaaca ttttaatcct tgtatagatt gtcatgcttt tatgtttaaa actgctcttg
     2941 ctatgttaaa agaagaaaat gcaagtttta tcatcacagg agaagtttta ggacaacgcc
     3001 ctatgagtca aagaagtgat gcgatggcaa aggttaaaaa acttgctctt gatgaagaag
     3061 atttaatctt gcgtcctatg tgcgcaaaaa acctacctct aaccaaacct gaaagagaag
     3121 gctgggtaga tagagaaaaa ctcgaaggta ttagtggaag aagtcgtaaa agacaacttg
     3181 aacttgcagt taaatttggc ttagaagact ttgaaagccc aggcggtggt tgtttgctaa
     3241 ctcttgatag ttttgctaaa aaaattcgag atttcataga atttgacaaa gatatgcagg
     3301 ttaatgacgc acaactttta aaatatggtc gtcatttaag attacccaat ggagctaaaa
     3361 tgatcatagg tagaaatgaa cttgaaaata ctcttttaaa aggtttaaaa actcctaaat
     3421 atgaagtaat agaacttggg gatttaatcg gagcttactc tttggtagat gaaaaaattt
     3481 cagaaaaaga cttagaactt gccttaaaaa tagcccttac ctatactaaa cacgaagtag
     3541 gaaaaagcta tgaacttaaa tttaaaaatc aagcttatac aagtatagct tttgaaaata
     3601 aggctgatat taatcaattt tttattagtt aaagtataaa gtatttagta aaacaagcga
     3661 tatagtattt gaatcttttc aaaatattgc aatcaagccc acgaaaatgg gctttttttt
     3721 attttaatcc ataagcattt tttaaattgt ttaaattcgc gctcgcattc aaaagcaaac
     3781 aatcagccaa aactaaacgt accatagcat tagctacaac acttcctcta acacctacac
     3841 aaggatcatg cctacctttg agttcaaatt ccaaattatt gccaaattta tctatacttt
     3901 cttgcttggc aaaaatagaa ggagtaggtt taaaataagt ttttaaaata agattttctc
     3961 catttgaaat tcctcctaaa attcctccgc tatgattgct taaaaacttg ccatctttta
     4021 aagcatcatt attacacgat ccgcgcattt tgcttgcatt aataccttcg cctatttcaa
     4081 ctgctttaac ggcattaact cccattaaag catgagctaa tttagagtct aacttatcat
     4141 aaagaacttc tccaagtccc acaagcatac cactaacttt tgtaaaaaca gcagcgccta
     4201 cactatcttt cgaatttcta gcatttaaaa tttcattttt aaagtcactt tctagttttg
     4261 gatcaaggca aaaaatttca cttttcttag caaattcaaa atcaaattct tcttctttca
     4321 aatttgatac aaaagttcct attccaaaaa caccactttg aacacaaatg ccaaattcac
     4381 acaaaagcat cgctgcaact gcaccaccag ccactctagc aacactttcc ctagcacttg
     4441 atctaccccc acccctatga tctcttatgc catatttata aaaataagta aaatccgcat
     4501 gagcaggacg aaatagatct tttaaattat cataatcttt agaatgagca ttttcattaa
     4561 aaactactat agctatggga tgacccgttg tatatccttc aaaaacccca cttaaaacct
     4621 gagctttatc gctttctttt cttggtgttg caaatttact tccgcctttg cgtttatcaa
     4681 gctcattttg taaaaattct tcatcaaatt taactccagc aggcattcca tcaataatac
     4741 atccaacagc cacaccatga gactcaccaa aacttgtaaa tttcaatctc gtaccaaagg
     4801 tattcactat aaagctccta atttctcaag tgcaattttt gctgccattt gctgtgcttc
     4861 ttttttgctt cccgcaatag ctcttgcaag ttctttacca tcaagcatta aagcgatttc
     4921 aaattgcttt aaatgatcag gaccaaaagc acgcactgtt tcatactgcg gagtttgtcc
     4981 tatttttccc tgtgtaatct cttgtaattt tgttttataa tcttttataa gaatttttgc
     5041 atcaatttga gggaaatttt tttctataag tcttaaagca atagtttttg caaactcaaa
     5101 tccagcttct aaatgtatag cacctataat ggcttctaac gcatctgaaa gtatagaagg
     5161 cttttctttt cctccattgt tttcctcagc aacactcata aaaataaaat cgcccaaatt
     5221 taaactattt gcaatttttg caaaagactt ttcattcact aaagccgctc taagcttaga
     5281 taaatctcct tcggcatctt tagcgaattt atgaaaaagg tattcaccca caactaaatc
     5341 aagcacagca tcacctaaaa attccaagcg ttcgttgttg taagattttt taaaactttt
     5401 atgggttaaa gcatgtatga gaagattttt atctttaaat tcataagtta aactccgctc
     5461 tagtttttca atgtttttca tcattttccc ttgcaatttt caaagcagct tcacgcgcca
     5521 atgtatcaca cctttcattt tccaaatgtc cattatgtgc ttttacccaa aaagccttaa
     5581 tcttatgaga ttttgccact ttaatatatt ccttccataa atctatattt tttttacctt
     5641 taaaatcctt ttttatccat ccttctagcc attcattaat actttgaacc attaggttag
     5701 aatctgtaaa aagcgaaatt tcacaaggct cttttaaagc cttcaaagat tcaataattg
     5761 ccattagctc cattctattg ttagtggtat tagcctcagc tccaaaacct tccttttgat
     5821 actccttata acgcaaaata taagcccatc cgccaaaacc tggattatta agacatgaac
     5881 catctgtata aatttcaatg tgtttcattg tttttcactt cataaataat tttacaagta
     5941 ttaaactcat aacaaacagg acagtgataa aaaaacaaag gcataacatt tttacactca
     6001 gaacaacggt atgaaaattc caaccccgca ttaaaagaat tatcttttaa aatttttaac
     6061 attttaaaat tagaattttt aaaaacaaac tgatgcgtat catcatgctt tgaaatttta
     6121 cccaaagcat aaaagaattc taaaaaatct tgattttcta aattaaacgc ttcattttcc
     6181 ctataaagca aatcacaaat atcaaaaaaa ttttgcccta aaaacatatg atatttttca
     6241 aaaactaaac gccccaacat aggattatct tctattttaa attctaaaag ttttttcttt
     6301 ttttcttcat cagtgatatt aaaagtacaa agttctaaag ctttgataaa atcatgctct
     6361 ttttgcacat cttcattaag ctcaaaaaga cattctaaaa gttctaaatt ttctttataa
     6421 gaacgaagtt ttaaataaac aatttttaaa agttttaagg cttgtatatt tcttggacgc
     6481 agttttaaag cttgtaataa aacttctttt gcacgctcta aaaatcctgc tttaaaataa
     6541 acttttgcca aagaaaggaa aataaattct ctttcttgtt tatctttaca tttttcaaga
     6601 gcaatcaaat aaatttgagt tgctttttca aattccccgc ttttagtaaa aatttcagcc
     6661 aaaaaactta aatttccaaa actcaagcta ctatttctta acaactcttt atgagcatta
     6721 tccatttcaa atttttttat aaatttttca agcttttgtt cttcatcttt gctagcaaat
     6781 attttccaaa tataatttgc aacagctaca acaaatacta aaatggttaa aattataagc
     6841 cctactaaag ggtctctgta ttctacaaag aaaaaatcca tagtctcgct ctaaaaattt
     6901 tatgccaaat tatagccaaa tctttgtata attttaacaa ggtttgtaaa atgataacta
     6961 aagaaagtat agaaaattta tcccaaagac ttaatattgt tgatattata gaaaattata
     7021 ttgaagtaaa aaaacaaggc tctagttttg tatgtatctg tccttttcat gcagataaaa
     7081 acccgtctat gcatatcaat cctaccaaag gtttttatca ttgttttgct tgcaaagctg
     7141 gtggagatgc ttttaaattt gtaatggatt atgaaaaatt aagttttgct gatgcagttg
     7201 aaaaagttgc aagccttagt aattttactt taagttatac aaaagaaaaa caagaaaata
     7261 aaaaagagct aaagtctata ctaccaagct taaatgcgta ttttaaagat aatctcaaac
     7321 accacaaaga agtcttaacc tatctttacc aaagagcttt aaatgacaaa gatatagcca
     7381 aattcgaatt aggttttgca ggagcaagtg aagatagtat aagattattg cgaaatcaaa
     7441 aaattccttt agaagatgct atgagtgttg gagctttaaa aaaagatgaa aataatgaat
     7501 tttacgcaag ttttatatgg cgtatcacct ttccaatcta cgatcataaa gacttattag
     7561 tagggtttgg agggcgtact ttaaatccta atgtaccggc aaagtatgta aattcacccc
     7621 aaaatatact ttttgataaa agtagaattt tttatgcttt taacatcgct aaagaaaata
     7681 tagccaaaaa aaaagaaata atagtatgtg aaggctacat ggatgcaata gcttttcaca
     7741 aagcagggtt taacaatgct gtagcagttc ttggaacagc attaaccgaa catcatctac
     7801 ccttaatccg ccgttatgat gcaaaagtga ttttatgttt tgacaatgat gaagcaggat
     7861 taaaagctgc gacacgatct gcatttttat tgagcacaaa caaaatagac ggtaaagtgg
     7921 caattttgca aggcggaaaa gatcctgctg agctcgtagc aaaaaatgaa agcacaaaac
     7981 ttcatgatat actcgatgaa ggaatagagc ttggtgaatt ttatatcaga cgcttaatat
     8041 ccactcattc cataatttct gctcttgata aacaaaaagc tttagaaact atacaaaaat
     8101 tcacctttaa tcttgaacct ttagtggcaa attcttacac tagtctagtc tcaaatttat
     8161 taaaagtgga tgaaaaattt attgtcttat cgcaaaattc aaaaaaaacc atacataccc
     8221 ctttaatttc tcaaaataaa tacaattttc ctaaagaaaa aattcacatt gcagaattag
     8281 aacttatagc ttttttaaaa cagcatccag atatatgtaa cgattttaag caaattagtg
     8341 atagtgtttg ttttaagcat aagattttat tg
//
LOCUS       DAZBIH010000063         8292 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.064, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000063 DAZBIH010000000
VERSION     DAZBIH010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8292)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8292)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8292
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.064"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            7..1104
                     /locus_tag="ACHFOB_001199"
     CDS             7..1104
                     /locus_tag="ACHFOB_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family protein"
                     /protein_id="HFN5800006.1"
                     /translation="MKTSFLAHSVAIVRSNFKGLLFTACIVIFAMYLSSVQSIKDTTH
                     LAATAFAIIVGVLLSPWFFKYQHHFQAGVHFSAKKLLRLGIVLYGFNITLTELLSVGL
                     KGFLLSAIVIFFVFIIALFVGMKIFKLDKETSMLVGAGSAICGAAAVLALESSLKSDP
                     FKGILAVGTVVIFGLVFMFLYPIAFSLNLFPFFDQNAMGVFMGATLHEVANVAGAAEM
                     AKDMAGFEQGASNVAVIIKMMRVILLVPFLLIVTYFFAKNQHSSSGKTAKSITIPYFA
                     FAFLGMIVLNTYLASKESILGIATSDIISLGKTLCTLCIVFAMAALGLQIDFKKFLKS
                     GSRVFGLAFVLGLVLIFGGYFLTLAFKGILW"
     gene            1199..1771
                     /locus_tag="ACHFOB_001200"
     CDS             1199..1771
                     /locus_tag="ACHFOB_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800007.1"
                     /translation="MKKILVSVLSSCLLASALSAVSFKEDSLKVSFEGYKTKDMIGTK
                     GEFKNVEYKFSKNIKDLASYLKGAKATIKPSNAFMGEGNDIITNNITKVFFPALLGDT
                     DIKVVFQDVIAGENKGVISAKITMDKKSTIVPLTYTIKDNKFEAKGQLDLHTFKNGSK
                     ALKALSDVAAGHGGISWPLVDISFNANLAE"
     gene            complement(1787..2353)
                     /gene="rsmG"
                     /locus_tag="ACHFOB_001201"
     CDS             complement(1787..2353)
                     /gene="rsmG"
                     /locus_tag="ACHFOB_001201"
                     /EC_number="2.1.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005575 - cellular_component [Evidence
                     IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0031167 - rRNA methylation [Evidence IEA];
                     GO_process: GO:0046118 - 7-methylguanosine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HFN5800008.1"
                     /translation="MIFKDYDFLQNYDLKNFEEKVKIYKELLSKFNRIHNLTHLKNID
                     ENIFDSIKILDFYDFSKAKNIADIGSGAGFPAVFLAFLLQSNFHLFEPNPKKAAFLRT
                     LKIECELPNLHIYKEKVQEYKNTFKADIITSRALMDVKPLLEICKNLKDENTVFILWK
                     GSEIYQELENIKDYEIFENNLRRYCILK"
     gene            complement(2354..2914)
                     /gene="ribA"
                     /locus_tag="ACHFOB_001202"
     CDS             complement(2354..2914)
                     /gene="ribA"
                     /locus_tag="ACHFOB_001202"
                     /EC_number="3.5.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003935 - GTP cyclohydrolase II activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase II"
                     /protein_id="HFN5800009.1"
                     /translation="MKIKISEIANLPSKWGNFQIQSFKENDKEHLCIFKNTPKDTLNL
                     RIHSECLTGDALGSLKCDCGEQLEFSLKYIEKNGGMVIYLRQEGRGIGLFNKVNAYAL
                     QDKGFDTIKANHQLGFKADERTYEIVEFILKHYEISKVNLLTNNPEKLDSIKEKIITR
                     IPILIEPNRFNVEYLNIKQTQMGHLK"
     gene            2972..3955
                     /gene="hemB"
                     /locus_tag="ACHFOB_001203"
     CDS             2972..3955
                     /gene="hemB"
                     /locus_tag="ACHFOB_001203"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HFN5800010.1"
                     /translation="MFKRFRRLRLNENLRAMVRENSLSVNDLIYPLFVVNGTGIKKEI
                     SSMPDVFQMSLDEILKECQNVVNLGIKAIILFGVLENEKKDSCGSDALDDEGLVARSI
                     REIKKNFPDLFIISDLCFCEYTDHGHCGIIDPKTKSVDNDVTLEISAKQALVHARAGV
                     DMIAPSGMMDGIITTLRKALDKEGFENLPIMAYSTKFASSYYGPFRDVAESAPSYGDR
                     KSYQMDFANGKEALEESLEDEAQGADILMVKPALAYLDVVKEISLHSNLPLCVYNVSG
                     EYAMLKAAKNAGVIDYEKVLYETMIAFKRAGAKLIITYHAKELAKMLKGEK"
     gene            3952..4872
                     /gene="argF"
                     /locus_tag="ACHFOB_001204"
     CDS             3952..4872
                     /gene="argF"
                     /locus_tag="ACHFOB_001204"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HFN5800011.1"
                     /translation="MKHFLTLRDFSKEEILSLVNHASELKKEPKKLLQDKTLAMIFEK
                     NSTRTRMAFELAITELGGKALFLSSNDLQLSRGEPVKDTARVIGAMVDFVMMRVNKHE
                     TLLEFARYSKAPVINALSELYHPTQVLGDLLTIKEWNKMQNGIAKVAFIGDSNNMCNS
                     WLIAAAILGFEFSIAIPKNYKISPEIWEFAMKQALISGAKISLSHDKFEALKDKDVVI
                     TDTWVSMGEENEKERKIKEFEGFMIDEKAMSVANKDAILLHCLPAYRGYEVSEEIFEK
                     HADVIFEEARNRLYVVKALLCFLDNQRGRE"
     gene            4869..5360
                     /locus_tag="ACHFOB_001205"
     CDS             4869..5360
                     /locus_tag="ACHFOB_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2603 domain-containing protein"
                     /protein_id="HFN5800012.1"
                     /translation="MKELEKYNTCLKRIDEFSQNLGIKKKDRTIFKMKQSENENEKCL
                     VLENGSFDSPEPWFVIDENDEIHTLLSLQSLKNILESLKQSQKENFELRLEKAIYQQI
                     PVDFNDVWTVAMDEIKQKAQNGTMEVSIDLEKLISKIKQEHPNLFVDMQAMIERVNQN
                     ERL"
     gene            5347..6702
                     /gene="hemN"
                     /locus_tag="ACHFOB_001206"
     CDS             5347..6702
                     /gene="hemN"
                     /locus_tag="ACHFOB_001206"
                     /EC_number="1.3.98.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004109 - coproporphyrinogen oxidase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HFN5800013.1"
                     /translation="MRDYKAFVKYSKAGPRYTSYPTAVEFNANFKYEEYIEILKKQDR
                     SLSLYFHLPFCRSACYFCGCNVIYTAKEESKERYLTYIFKELDILSTILDTKREVVQM
                     HFGGGTPTFFSAKQLQNLILKIRSVFGNFSKDAEISCEIDPRFLNGEQATVLTQNGFN
                     RISFGVQDFDEKVQKEIHRIQPFELTQNALNLVRSKGIKSVNMDLIYGLPYQNLQSFT
                     QTLEKVMLLNPDRLAIFNYAHVPWLKKNMRKFDENTLPSPDVKLEILEFCEKFLSKNG
                     YKMIGMDHFAKENDELFKALENGTLHRNFQGYTTKGGADLVGVGLTSIGEGQRHYAQN
                     FKDMSSYEAALDRGVLPFERGVALSDDDELRKAVIMELMANFKLDIKSIEKEFCIDFQ
                     EYFKEDLKALEEYKDFINFDENFIKVNETGVLLIRNIAMCFDAYMKNISEDKKVFSKT
                     V"
     gene            6704..7969
                     /locus_tag="ACHFOB_001207"
     CDS             6704..7969
                     /locus_tag="ACHFOB_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFN5800014.1"
                     /translation="MKFSQISDACVKCGKCIPVCTIHEENRDEITSPRGFLDLLAAYK
                     EGSLELDKEAKKVFESCFLCTNCVEVCPSKLRVDNAIEEVRYDIAKKFGIAWYKKLIF
                     FFLRRRKILDLVAKLGYVFQSCAFKIQNENENTGMKARFSMPFVKKGRLLTSFNKKSF
                     LNSNPKFINNDGEKTIGFFVGCLANYFYIDTANAVLKIAKELKINVDLMKEQVCCGAP
                     QFFTGDFKSVEVLAKKNIEYFEKKLEKLDAIIVPEATCSAMLKIDYEHFFIMQNDLDW
                     AKRAKCVSSKIYMASEYFYKFTSLEEILKTKNKFNYSITYHDPCHARKMQGVFKEPRE
                     LLKTNYHFVEMSNSNTCCGFGGVSMQTDYYDRALSVGLKKAQMIDESKASVVSAECSA
                     CRMQISNALEQNSSKVVFVSPLELIVKAL"
     gene            7966..>8292
                     /locus_tag="ACHFOB_001208"
     CDS             7966..>8292
                     /locus_tag="ACHFOB_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800015.1"
                     /translation="MMMKIVFKGKSSEYEIQRSCFCVDAFVIKDKIEERDGVDFITSN
                     VDLLEFSDDSFTFEEIVKHFNICDTEDMIIVEDFDMKSNKDNQNQEDDIEHNILKSEK
                     IMHENTK"
BASE COUNT         2862 a         1004 c         1565 g         2861 t
ORIGIN      
        1 aaataaatga aaacaagttt tttagcacat agcgtggcta tagtgcgatc aaattttaag
       61 ggtttgcttt ttactgcttg tatagtgatt tttgctatgt atctttctag tgttcaaagt
      121 atcaaagata ccactcattt agcagcgact gcttttgcta tcatcgtagg agtgttgctt
      181 tctccttggt tttttaaata ccaacatcat tttcaagccg gagtgcattt tagtgcgaaa
      241 aaacttttaa gacttggcat tgttttatat ggttttaata tcactttaac tgagctttta
      301 agtgtagggt tgaaagggtt tttgctttct gctatagtga tattttttgt ttttattatt
      361 gctttatttg tgggaatgaa aatttttaaa ctcgataaag aaacttctat gcttgttgga
      421 gccggaagtg cgatttgcgg tgcggcagcg gttttagcac tagagtcaag tttgaaaagt
      481 gatcctttta agggaatttt agctgtaggt acggtggtga tttttggact tgtgtttatg
      541 ttcttatatc ccatagcttt ttctttaaat ctttttcctt tttttgatca aaatgctatg
      601 ggtgttttta tgggagctac tttgcatgag gtggcaaatg tcgcaggtgc tgctgaaatg
      661 gcaaaggata tggcaggatt tgagcaaggt gcttctaatg ttgcagtgat tataaaaatg
      721 atgagagtga ttttacttgt gccttttttg cttatagtga cttatttttt cgctaaaaat
      781 cagcattcaa gcagtggaaa aactgcaaaa agtatcacta taccttattt tgcttttgca
      841 tttttaggca tgatagtttt aaatacttat ttagcaagca aagaaagtat tttaggtatt
      901 gctacgagtg atattatctc tttaggtaaa acactttgta ctttatgtat cgtttttgct
      961 atggcagctt taggcttgca aattgacttt aaaaaatttt taaaaagtgg ctctagggta
     1021 tttggcttgg cttttgtttt agggcttgtt ttgatttttg gaggatattt tttaacctta
     1081 gcttttaaag gtatactttg gtaataaaaa ttatttttta ttttagaaaa ttttatttta
     1141 ttaatcaact aagaatataa tttaattcat taattaaatt tattaaaaag gaataaagat
     1201 gaaaaaaatt cttgtaagtg ttttaagttc ttgcttgtta gcttcggctt taagtgctgt
     1261 atcttttaaa gaagatagtt taaaggtttc ttttgaagga tataaaacta aagatatgat
     1321 aggaacaaaa ggtgaattta aaaatgtaga atataaattt tctaaaaata taaaggattt
     1381 ggcaagttat cttaaaggcg ctaaagctac cataaagcca agcaatgctt ttatgggtga
     1441 aggcaatgat attataacca ataatatcac aaaagtattt ttccctgctt tattgggaga
     1501 tacggatatt aaagttgttt ttcaagatgt gattgcgggt gaaaataaag gcgttatttc
     1561 agcaaaaatt actatggata aaaaaagtac tattgtacct ttaacttata ccatcaaaga
     1621 taataaattt gaagctaaag gacaacttga tttgcatact tttaaaaatg gttctaaagc
     1681 attaaaagca ttaagcgatg ttgctgcagg acatggtgga atttcttggc ctttagtgga
     1741 tatcagtttt aatgctaatt tagcagaata aaaagtagcc ttagggctac tttaaaatac
     1801 aatatcttct taaattattt tcaaaaattt cataatcttt tatattttca agttcttgat
     1861 aaatttcact acctttccat aaaataaaaa ccgtattttc atcttttaga tttttgcaaa
     1921 tttcaagcaa aggcttgaca tccattaagg ctcttgaagt gatgatatca gctttaaagg
     1981 tattcttgta ttcttgaact ttttctttgt aaatatgtaa atttggaagt tcacattcta
     2041 tttttaatgt ccgcaaaaag gcagcttttt tgggattggg ttcgaaaaga tgaaaattgc
     2101 tttgcagtaa aaaagctaaa aatacagctg gaaatcctgc gccacttcct atatcggcaa
     2161 tattttttgc tttagaaaaa tcataaaaat ctaaaatttt aatactatca aagatatttt
     2221 catctatatt ttttaaatga gtaagattgt gaatgcggtt aaatttagat aataattctt
     2281 tataaatttt taccttttct tcaaagtttt ttaaatcgta gttttgcaaa aaatcataat
     2341 ctttaaaaat catttattta agatgtccca tttgagtttg ttttatgttt aaatactcta
     2401 cattaaaacg attaggttct attaaaatcg gtatgcgtgt gatgattttt tctttgatag
     2461 aatctagctt ttcagggtta tttgtgagta aattaacctt agaaatttca tagtgtttga
     2521 gtataaattc tacaatttca taagttctct catcggcttt aaagccaagc tgatgatttg
     2581 ctttaatcgt atcaaaacct ttatcttgta aagcataagc attaaccttg ttaaaaagcc
     2641 ctatacccct tccttcttgc ctaagataaa tcaccattcc gccattcttt tctatatatt
     2701 ttagtgaaaa ttcaagctgt tccccacaat cacactttaa acttcctaaa gcatctcctg
     2761 ttaagcactc tgaatgaatt cttagattga gtgtgtcttt tggagtattt ttaaatatac
     2821 ataaatgttc tttatcattt tctttgaaac tttgtatttg gaaatttccc catttgctag
     2881 gtaaattcgc aatttctgaa atttttattt tcatttacta ctctctataa tcaaatttat
     2941 gttaagattt tagcaaaaaa aggacaaaaa aatgtttaaa agatttagaa gattaaggct
     3001 taatgaaaac ttaagagcca tggtaagaga aaattcttta agtgtaaatg atttgattta
     3061 tccgcttttt gtggttaatg gaacggggat aaaaaaagaa atttcttcta tgcctgatgt
     3121 gtttcaaatg agtttagatg aaattttaaa agagtgtcaa aatgtagtta atttaggcat
     3181 taaagccatt atactttttg gcgttttgga aaatgagaaa aaagacagct gtggaagcga
     3241 tgctttagat gatgaagggc ttgttgcaag aagtataaga gagattaaga aaaattttcc
     3301 agatcttttt ataatcagcg atctttgttt ttgtgaatac acagatcacg ggcattgtgg
     3361 gattatcgat ccaaaaacaa aaagtgtgga taatgatgtc actttagaaa tttcagccaa
     3421 acaagcctta gttcacgcaa gagcaggggt agatatgata gcacctagtg gaatgatgga
     3481 tggtattatc actactttgc gcaaagcttt agataaagaa ggttttgaaa atttgcctat
     3541 aatggcgtat tctactaaat ttgcttcaag ttattatggg ccatttcgag atgtagcaga
     3601 atcagctcca agttatggag atagaaaaag ctatcaaatg gattttgcta atggtaaaga
     3661 agctttagaa gaaagcttag aagacgaagc acaaggagct gatattttga tggtaaaacc
     3721 cgctcttgct tatcttgatg tggttaaaga aatatccctt cattctaact tgcctttgtg
     3781 tgtttataat gtaagcggag agtatgctat gttaaaggca gctaaaaatg caggagtgat
     3841 tgattatgaa aaagttttgt atgaaactat gatagctttt aaaagagcag gggcaaagct
     3901 tatcatcact tatcatgcta aagaattagc taaaatgtta aaaggagaaa aatgaaacat
     3961 tttttaactt taagagattt ttctaaggag gaaattttaa gccttgtaaa tcatgctagc
     4021 gagcttaaaa aagagcctaa aaaactttta caagataaaa ctttagcaat gatttttgag
     4081 aaaaactcta caagaacaag aatggccttt gaattagcca taacagagct tggcggaaag
     4141 gctttatttt taagtagcaa tgatttacaa cttagtcgtg gcgagcctgt aaaggataca
     4201 gctagggtga taggggcgat ggttgatttt gtgatgatga gagtcaataa acatgaaact
     4261 ttactcgaat ttgcaagata ttctaaagcc cctgtgatca atgctttaag cgagctttat
     4321 caccctactc aggttttagg agatttgctt actatcaaag aatggaataa gatgcaaaat
     4381 ggtatagcaa aagttgcttt tatcggagat agtaacaata tgtgcaattc ttggcttatt
     4441 gcggctgcga ttttgggttt tgaatttagt atagctatac caaaaaacta taaaattagc
     4501 cctgaaattt gggaatttgc tatgaaacag gctttgattt caggagctaa aatttcctta
     4561 agtcatgata aatttgaagc cttaaaggat aaagatgtag tcattaccga tacttgggtt
     4621 tctatgggtg aagagaatga aaaagaacgc aagattaaag aatttgaagg atttatgatt
     4681 gatgaaaagg ctatgagcgt tgccaataaa gacgcgatat tgcttcattg tttgcctgct
     4741 tataggggtt atgaagtgag tgaagaaatt tttgaaaaac atgcagatgt gatttttgaa
     4801 gaagcaagaa atcgccttta tgtggtaaaa gccttgcttt gctttttgga taatcagaga
     4861 ggaagagaat gaaagagcta gaaaagtata acacttgctt aaaacgcatt gatgaattta
     4921 gtcaaaatct aggaataaag aaaaaagata gaacgatttt taaaatgaag caaagcgaga
     4981 atgaaaacga aaaatgttta gttcttgaaa atggaagttt tgattctcct gagccttggt
     5041 ttgtgatcga tgaaaacgat gaaattcaca ctttgctttc tttgcaaagt cttaagaata
     5101 tacttgaaag tttaaaacaa agtcaaaaag agaattttga attgcgttta gaaaaggcga
     5161 tttatcaaca aattcctgta gattttaacg atgtttggac ggttgctatg gatgagatca
     5221 agcaaaaggc gcaaaatggc accatggaag ttagtattga tcttgaaaaa ttaatttcta
     5281 aaatcaaaca agagcatcca aatttatttg tagatatgca agcgatgata gaaagggtaa
     5341 accaaaatga gagattataa agcttttgta aaatactcta aagcaggacc acgctacact
     5401 tcttatccta cagcagtaga gtttaatgca aatttcaaat acgaagaata tatagaaatt
     5461 ttaaaaaagc aagatagatc tttatcgctt tattttcatt taccattttg taggagtgcc
     5521 tgttattttt gtggttgtaa tgttatttat acagccaaag aagagagtaa agaaaggtat
     5581 ttaacttata tttttaaaga gcttgatatt ttaagtacta ttttagatac taaaagagaa
     5641 gtggtgcaaa tgcactttgg gggcggaact ccaacttttt ttagtgctaa acaacttcaa
     5701 aatttgattt taaaaatcag atctgttttt ggaaattttt ctaaagatgc agagattagc
     5761 tgtgagatcg atccgcgttt tttaaatggg gaacaagcca cagttttaac gcaaaatggc
     5821 tttaatcgta tcagctttgg agtacaggat tttgatgaaa aagttcaaaa agaaattcat
     5881 cgcatccagc cttttgaatt aacacaaaat gctttaaatc ttgtaagaag taaaggtata
     5941 aagtctgtaa atatggattt aatttatggt ttgccttatc aaaatttaca aagctttaca
     6001 caaactttag aaaaagttat gcttttaaac cctgatcgtt tggcgatttt taattacgct
     6061 catgtgcctt ggcttaagaa aaatatgaga aaatttgatg aaaatacctt gccaagtcct
     6121 gatgttaagc ttgaaatttt agaattttgt gagaaatttt taagcaaaaa tggttataaa
     6181 atgataggaa tggatcattt tgcaaaagaa aatgatgagc tttttaaagc tttagaaaat
     6241 ggaactttgc atagaaattt ccaaggttat accaccaaag gcggtgctga tttagtcggt
     6301 gttgggctta caagtatagg cgaaggacaa agacattatg cgcaaaattt taaagatatg
     6361 tcaagttatg aagctgcatt agatagagga gttttacctt ttgaaagagg cgtagcttta
     6421 agcgatgatg atgagcttag aaaagcagtg attatggagt taatggcaaa ttttaagctt
     6481 gatattaagt caatagaaaa agaattttgc attgattttc aggagtattt taaagaggat
     6541 ttaaaagctt tagaagaata caaagatttt attaattttg atgaaaattt tatcaaagtc
     6601 aatgaaacag gtgttttact tataagaaat attgctatgt gttttgatgc ttatatgaaa
     6661 aacattagtg aagataaaaa agtattctca aaaacggtgt aagatgaaat ttagtcaaat
     6721 aagtgatgct tgtgttaaat gtggcaaatg tatacctgtt tgtactatac atgaagaaaa
     6781 tcgcgatgaa attactagtc caagaggatt tttagatctt ttagccgctt ataaagaggg
     6841 aagtctagag cttgataaag aagctaagaa agtttttgaa tcttgttttt tatgcaccaa
     6901 ttgtgttgaa gtatgtccaa gtaaattaag agtagataat gccatagaag aagttcgtta
     6961 tgatatagct aaaaaatttg gtatagcttg gtataaaaaa cttatttttt tctttttaag
     7021 aagacgcaaa attttagatt tggtagctaa gcttggctat gtgtttcaaa gttgtgcgtt
     7081 taaaattcaa aatgagaatg aaaatacagg tatgaaggca agattttcca tgccttttgt
     7141 taaaaaggga agattgctta caagttttaa taaaaaaagt ttcttaaatt ctaatccaaa
     7201 atttatcaat aatgatggag aaaaaacaat aggttttttt gtaggttgtt tggcgaatta
     7261 tttttacata gatacggcta atgcagtgct taaaatcgct aaggaattaa aaatcaatgt
     7321 ggatttgatg aaagaacaag tgtgttgtgg agcgccgcaa ttttttacgg gtgattttaa
     7381 aagtgttgaa gttttggcta aaaaaaatat tgagtatttt gaaaaaaaat tagaaaaatt
     7441 agatgctatt atagttcctg aggccacttg ttcggctatg ttaaagatag attatgaaca
     7501 tttttttata atgcaaaatg atttagactg ggcaaaacgc gcaaaatgtg tgtcatctaa
     7561 gatatatatg gctagcgagt atttttataa atttacttct ttggaagaaa ttttaaaaac
     7621 aaaaaataaa tttaattata gtattactta tcacgatcct tgccatgcaa gaaaaatgca
     7681 aggagttttt aaagagccaa gagaactttt aaaaacaaat tatcattttg tagaaatgag
     7741 taattctaat acttgttgcg gttttggcgg ggtgagtatg caaacggatt attatgatag
     7801 agctttaagt gtagggctta aaaaagcaca aatgatcgat gaaagtaagg ctagtgtggt
     7861 aagcgccgag tgttcagctt gcagaatgca aatttcaaat gcattagaac aaaattcaag
     7921 caaggttgtt tttgttagtc ctttagaact tatagtaaaa gctttgtgat gatgaagata
     7981 gtatttaaag gcaaaagttc tgaatacgaa attcaaagat cgtgcttttg tgttgatgct
     8041 tttgtgatta aagataagat tgaagaacga gatggcgttg attttatcac ttcaaatgta
     8101 gatcttttgg aatttagtga tgacagtttt acttttgaag aaattgtaaa acattttaat
     8161 atttgtgata ctgaagatat gattatcgtt gaagattttg acatgaaatc aaacaaagat
     8221 aatcaaaacc aagaagatga tatagaacac aacatcttaa aatccgaaaa aataatgcat
     8281 gaaaacacaa aa
//
LOCUS       DAZBIH010000064         8135 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.065, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000064 DAZBIH010000000
VERSION     DAZBIH010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8135)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8135)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8135
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.065"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="ACHFOB_001209"
     rRNA            complement(<1..102)
                     /gene="rrf"
                     /locus_tag="ACHFOB_001209"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
     gene            complement(377..3420)
                     /locus_tag="ACHFOB_001210"
     rRNA            complement(377..3420)
                     /locus_tag="ACHFOB_001210"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            complement(3894..3970)
                     /locus_tag="ACHFOB_001211"
     tRNA            complement(3894..3970)
                     /locus_tag="ACHFOB_001211"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3934..3936),aa:Ile,seq:gat)
     gene            complement(3979..4054)
                     /locus_tag="ACHFOB_001212"
     tRNA            complement(3979..4054)
                     /locus_tag="ACHFOB_001212"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4019..4021),aa:Ala,seq:tgc)
     gene            complement(4157..5669)
                     /locus_tag="ACHFOB_001213"
     rRNA            complement(4157..5669)
                     /locus_tag="ACHFOB_001213"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(6150..6887)
                     /locus_tag="ACHFOB_001214"
     CDS             complement(6150..6887)
                     /locus_tag="ACHFOB_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002867936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5800016.1"
                     /translation="MIKAFSLLEFVFIILILGIVFNLGSLYLKKDNLLEGAIQILNDI
                     QYTQSLAMMQEGIRVDELAIAKREWFKSKWQIYFIKSAATGYDQTYTIFLDKNGDGNA
                     NLGKTEINIDREIAVDVINHNKLMNSGQSGVISKDDEKTTQRFNLTKRFGIEKVEFKG
                     SCSGFTRLVFDEMGRVYSPLKNANYAYEKTLAKNNSDCIIRLLSKKHALCIVIDTLSG
                     YVYIPDFKTLKSQFVNIKNKNYECSKI"
     gene            complement(6880..8106)
                     /locus_tag="ACHFOB_001215"
     CDS             complement(6880..8106)
                     /locus_tag="ACHFOB_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800017.1"
                     /translation="MEKIKNYKLIIILLSLDLLALLYGISTLSISADEADIYFGEQGK
                     SLIFSHSLLYYISHFGTFIFGQNDFGLRLPFLFFHFLSCLLLYLLALKYTKTKIDAFF
                     SLLLFVLLPGTVASALLVNAASLVIFLTLAILCAYEYEKKWLFYILLIIVLFVDKSFN
                     ILFLTFFFFGIYKRNAILFTLSLVLFGASISFYGFDTGGRPRGYFLDTLGIFAACFSP
                     LVFVYFFYTIYHLTFQKYKNLLWFLMSVTFVFCLLLSLRQKLFLDDFLPFCVICTPLL
                     IKTLMQSYRVRLPVFRLRYKIFIECSIIFLIFCYFLIVANQLLYYFINNSNRHFANNY
                     HFAKELALELKKQDVLELATAPSLQKRLRFYGIKNSNKFYLKALKQADKHDMDKKIVK
                     VKLGKYEKVYQILNYD"
BASE COUNT         2459 a         1777 c         1323 g         2576 t
ORIGIN      
        1 actttccccc tgccagtaag gcgtagtatc atcacccacg atgtgcttag cttcttggtt
       61 cgggatggag caaggcgttt ccacatctgt ataatcacgg acattgttat ttaaatattc
      121 tttgaaagat tgaatttaag aataaagctt aatcttttta tttctttact tttttcttta
      181 ttctctttct tcttttgttt ttctttattt ttttcttatc ttttatcttt gataagtttt
      241 tatatagaat acttaaaaaa caatgttaag agcaagttct aatacaaact ctacttgaaa
      301 gatttctatt aaactctaaa tattatctat attcaaagtc ttcttaaaaa ccttaacaag
      361 gaagtgatgc tttattaaag ataagccaaa cgctctatta gtactggtca gctaaaggac
      421 tttcatccat tacacaccca gcctatcaaa ctagtagtct tctagagagc ttagagaaga
      481 ttcatcttag agttggcttc acgcttagat gctttcagcg tttatccttt ccaaacttag
      541 ctacgctgcg atgctcttgg cagaacaaca gctacaccag tggtttgttc aacccggtcc
      601 tctcgtacta gggtcaaatc tcttcaatct tcttacgccc acggcagata gggaccgaac
      661 tgtctcacga cgttctgaac ccagctcgcg taccgcttta aatggcgaac agccataccc
      721 ttgggacctg ctccagcccc aggatgcgat gagccgacat cgaggtgcca aacctccccg
      781 tcgatgtgag ctcttggggg agatcagcct gttatccccg gggtaccttt tatcctttga
      841 gcgatggccc ttccacacag aaccaccgga tcactaagac cgactttcgt ctctgcttga
      901 cttgtatgtc ttgcagttaa gctggcttat acctttatac tctacgaacg atttccaacc
      961 gttctgagcc aacctttgta agcctccgtt attatttggg aggcgaccgc cccagtcaaa
     1021 ctacccacca gacattgtcc cacttgagga taactcaagc tggttagcta cccaaataag
     1081 aaagagtggt atctcaacaa tggctcatat acaactggcg tcatatactc aaagcctccc
     1141 acctatcctg cacattctta tccaagtagc agtgtcaagc tgtagtaaag gtccacgggg
     1201 tctttccgtc ttgccgcggg taggaggaat tttcacctcc actacaattt cactggatcc
     1261 ctctttgaga cagctcccat ctcgttacgc cattcatgca ggtcggtatt taaccgacaa
     1321 ggaatttcgc taccttagga ccgttatagt tacggccgcc gtttactcgg gcttcgatca
     1381 agagcttcgc taatgctaac cccatcaatt aaccttcgag caccgggcag gcgtcacacc
     1441 ctatacatcc tcttacgagt tagcagagtg ctgtgttttt ggtaaacagt cgggagggac
     1501 tctttgttgt aagtttcctt gctttcggag taaatcctaa tacaaagcta accacacctt
     1561 ataccgaaga tacggtgcta ttttgcagag ttccttaaag agagttcttc cacgcgcctt
     1621 agaatactca tcccacccac ctgtgtcggt ttacggtacg ggcaacatta gctaaactta
     1681 gaaacttttc ttggctcgac ggcatcaggg gttcttctat ccatccgaag acttcaaaaa
     1741 gcctttcagt tctcggagta ttgttatacg gatttgcctg tataacctcc tacgacctta
     1801 gactagcact tccatccgct agccccctta gccctaagcg tccttccatc gcacactaat
     1861 gttggtattg gaatattaac caatttgcca tcgtctaccc ctttcggact cgacttagga
     1921 cccgactaac cctacgatga cgagcatcgc gtaggaaacc ttgggtttac ggcgttaatg
     1981 attctcacat taattatcgc tactcatgcc tgcatgctca cttctattcg ctccagcact
     2041 ccttaccggt ataccttcga cgcaaataga acgctctcct accacttgca cacaacttaa
     2101 actacttaac tttagcctaa gaatattttt actgatttta ctaagtttta tttctatctt
     2161 tactctataa aaatcagtaa aaatataact tagtttctca tattctaaac ttaaataatc
     2221 taagttgtgc gcaagtctac agcttcggta cttactttag ccccgttata ttttccgcgc
     2281 aaaatcacta gaccagtgag ctattacgct ttctttaaag gatggctgct tctaagccaa
     2341 cctcctggtt gtttaagtaa cttcacatcg ttttccactt aagtaagatt tagggacctt
     2401 agctggtagt ctgggttgtt tccctcttga cgacggattt tatcactcgc cgcctgactg
     2461 ctgtgattac atataaggta ttcggagttt gatagggttt ggtacattgg tgtatgccct
     2521 agcccattca gtgctctacc cccttatatt acgacacaac gctataccta aatatatttc
     2581 ggagagaacc agctatcacg aagtttgatt ggcctttcac ccctatccac aagtcatccc
     2641 ggggcttttc aacgcctatg ggttcagtcc tccactagtt cttacactag cttcaacttg
     2701 ctcatggata gatcacttcg tttcgggtct gcagcatctg actaagcgcc ctattcagac
     2761 tcgctttcgc tacggcttcg cgtttgctta accttgccag acaccacaac tcgcaggctc
     2821 attatgcaaa aggcagtcca tcaccctgta ttgctacata gggctctgaa tgattgtaag
     2881 caaatggttt caggttctat ttcactctga tcacctcagt tcttttcacc tttccctcac
     2941 ggtacttgtg cactatcgat ctggtattag tatttagggt tggatcgtgg tcgacccgga
     3001 ttcagacagg attcctcgtg tcccgcccta ctcaggatac tgctagctaa gctttgtttt
     3061 tcgcatacgg gactatcacc ctctatggtt atactttcca gaatgttctg ctaaactcag
     3121 ctcttgcaca ttgcagtcct acaaccccca gtgcaagcac tgggtttgcc ctcttgcgct
     3181 ttcgctcgcc gctactgacg caatctctat tgatttcttt tcctgagggt actaagatgt
     3241 ttcaattccc ctcgttcgct cctatatagg taatgtatat ctctatacat tgggttgccc
     3301 cattcggaaa tctacggatc aaagcttctt gacagctccc cgtagcttat cgcagtctag
     3361 tacgtccttc atcgccttta ccagtcaagg catccaccat tcgctcttag tagcttacct
     3421 tttttacctt ttattattga ttctaaaacg catcacttcc ttgttaaagt ttttatgata
     3481 agacttcttt atcttaagac ggaaagcatt caaacactta atataaaact aaatgattta
     3541 gtctcaacta agctgtgagt ttgaaacttg tctttagtag taataactaa agaaaagata
     3601 aataggtttt atcctttaac aagtcctgta aaattgtttt tattaaaact tgcttgtgac
     3661 tcttaacaat gataattaaa aagaacatta ggtttaaaac ctaaaggaag tatatatatt
     3721 aatataatca ttataaatat aaatacataa tgtatatgtt atttatatct atctaaagta
     3781 tattctttta tagctaaaga taaaaataaa tctaagtatt tagagtttat atatttaatc
     3841 tactttatat acttgcttta gattttaaag cttctttatt caaatctttt ttatggtggg
     3901 cctaacaaga cttgaacttg tgacctcacc cttatcaggg gtgcactcta accagctgag
     3961 ctataggccc ttaataaatg gtggagaata gcgggatcga accgctgacc tcctgcgtgc
     4021 aaagcaggcg ctctcccagc tgagctaatt ccccataaac aattagcttt atcatcaatc
     4081 tttgaaatct aaacaagaat caattgagtt tatatattga agtaatagtt gtgagactta
     4141 ttactttgta ctctagaaag gaggtgatcc aaccgcaggt tctcctacgg ttaccttgtt
     4201 acgacttcac cccagtcgct gattccactg tggacggtaa ctagtttagt attccggctt
     4261 cgagtgaaat caactcccat ggtgtgacgg gcggtgagta caagacccgg gaacgtattc
     4321 accgtagcat ggctgatcta cgattactag cgattccggc ttcatgctct cgagttgcag
     4381 agaacaatcc gaactgggac atattttata gatttgctcc acctcgcggt attgcgtctc
     4441 attgtatatg ccattgtagc acgtgtgtcg ccctgggcat aagggccatg atgacttgac
     4501 gtcgtccaca ccttcctcct ccttacgaag gcagtctatt tagagtgctc ggccgaaccg
     4561 ttagcaacta aatacgtggg ttgcgctcgt tgcgggactt aacccaacat ctcacgacac
     4621 gagctgacga cagccgtgca gcacctgtct ctaagttcta gcaagctagc accctcatat
     4681 ctctataagg ttcttaggat atcaagccca ggtaaggttc ttcgcgtatc ttcgaattaa
     4741 accacatgct ccaccgcttg tgcgggtccc cgtctattcc tttgagtttt aatcttgcga
     4801 ccgtactccc caggcggtac acttaatgcg ttagctgcat tactgagatg actagcatcc
     4861 caacaactag tgtacatcgt ttagggcgtg gactaccagg gtatctaatc ctgtttgctc
     4921 cccacgcttt cgcgccttag cgtcagttga gttccagcag atcgccttcg caatgggtat
     4981 tcttggtgat atctacggat tttaccccta caccaccaat tccatctacc tctccctcac
     5041 tctagactat cagtttccca agcagtttaa tggttaagcc attagatttc acaagagact
     5101 tgataatccg cctacgcgcc ctttacgccc agtgattccg agtaacgctt gcaccctccg
     5161 tattaccgcg gctgctggca cggagttagc cggtgcttat tccttaggta ccgtcagaat
     5221 tcttccctaa gaaaaggagt ttacgctccg aaaagtgtca tcctccacgc ggcgttgctg
     5281 cgtcagggtt tcccccattg cgcaatattc cctactgctg cctcccgtag gagtctggac
     5341 cgtgtctcag ttccagtgtg actgatcatc ctctcagacc agttaagcgt catagccttg
     5401 gtaagccatt accttaccaa ctagctgata ctatatagtc tcatcctaca ccgaaaaact
     5461 ttccctactc aacttgtgtt aagcaggagt atagagtatt agcagtcgtt tccaactgtt
     5521 gtcctcttgt gtagggcaga ttaactatac cttactcacc cgtgcgccac taatccactt
     5581 ctagcaagct aaaagcttca tcgttcgact tgcatgtatt aggcacgccg ccagcgttca
     5641 ctctgagcca ggatcaaact ctccataaaa attatagata gtttaatctt tttcttcaaa
     5701 gaaaaagttt atgaaagatt aaaagaaaag cttttaatct ttttaattat tagattgaat
     5761 agattttaca taattgctta tgcctaaatc tttatctggc tcaatcgatc acttatttag
     5821 atttcaaaga ttgactaata agatttgaat aacaatacta atttaaaaga acaaaacaaa
     5881 aaatcatttt taaaagaaaa gtttttaaat taaaaaacaa gatttataaa aaagctttta
     5941 gtttataaaa taaaaaccaa aagagttaat ttataaaatc tactaagcta gtgaaacttt
     6001 ataatttaaa agattttaag tccttttttt caaaaaagga aatgaaagta taaccaatta
     6061 aacttaaaag gggattaaat aaaggattaa atagtataaa tatttgtgta agtatttata
     6121 taagtatttg gtgggttgaa aaatgggggc tatattttag agcactcgta atttttattt
     6181 tttatattaa caaattgact tttaagtgtt ttaaaatctg gaatataaac ataaccgcta
     6241 agcgtatcta taacgataca aagagcatgc ttttttgata acaaacgtat aatgcaatct
     6301 gaattattct ttgctaaagt tttttcatat gcataattgg cattttttaa cggagaatac
     6361 actctgccca tttcatcaaa tactaatcta gtaaatcctg aacaagatcc tttaaattca
     6421 accttttcta ttccgaatct ttttgtaaga ttaaatcttt gtgtagtttt ttcatcatct
     6481 ttactaataa ctccactttg acctgaattc attaatttgt tatgattgat tacatcaaca
     6541 gcaatttctc tatctatatt gatttcagtt ttacctaaat tagcatttcc atcgccattt
     6601 ttatccaaga aaatagtata tgtttgatca taacctgtgg cagctgattt tataaaataa
     6661 atctgccatt tacttttaaa ccactctctt tttgcgatag ccaactcatc aactcttatg
     6721 ccttcttgca tcatggctaa actttgggta tattggatat cattaagaat ttgtattgca
     6781 ccttctagta gattgtcttt ttttaagtaa agactgccta aattaaaaac tatacctaaa
     6841 atgagaatta taaacacaaa ttccaacaaa ctgaaagctt taatcatagt ttaaaatctg
     6901 atatactttt tcatattttc caagttttac tttaacaatt tttttgtcca tatcatgctt
     6961 atcggcttgt tttaaagctt ttaaataaaa cttattgcta ttttttattc cataaaatcg
     7021 caatcttttt tgcaaacttg gggctgttgc aagctctaaa acatcttgtt tttttaattc
     7081 tagcgccaat tctttagcaa aatgataatt attggcaaaa tgacgatttg aattgtttat
     7141 aaaataatac aataattgat tagcgacgat taaaaagtaa caaaatatca aaaaaattat
     7201 agaacattct ataaagattt tataccttaa tcgaaaaact ggtaatctca ccctataact
     7261 ttgcattaaa gtttttataa gcaaaggagt gcaaataaca caaaaaggca aaaaatcatc
     7321 taaaaaaagt ttttgtctta aagaaagcaa caaacaaaat acaaatgtta cgctcattaa
     7381 aaaccataat aaatttttat atttttgaaa agtcaaatga taaatagtat aaaaaaaata
     7441 cacaaaaacc aaaggagaaa aacatgcagc aaaaattcct aaggtatcta aaaaataacc
     7501 tcttggacga ccacctgtat caaaaccata aaaactgata ctcgctccaa acaaaacaag
     7561 agataaggta aataaaatag catttctttt ataaatccca aaaaagaaaa aagttaaaaa
     7621 taaaatatta aaagatttat caacaaataa tactataatc aataatatat aaaaaagcca
     7681 ttttttttca tattcgtaag cacataatat agcaagggtt aaaaaaatca ccaaagatgc
     7741 ggcattaacc agtaaagcac ttgcaacagt acccggcaat aaaacaaata acaataaaga
     7801 aaaaaaagca tcaattttag ttttagtata ttttaaagct agcaaataca aaagcaaaca
     7861 acttaaaaaa tgaaaaaata aaaaaggaag ccttaaacca aaatcatttt gcccaaaaat
     7921 aaaagttcca aaatgagata tataataaag caaactatgg gaaaaaataa gtgatttacc
     7981 ctgctcacca aaataaatat cagcttcatc agcactaata ctcagtgttg aaattccata
     8041 aagcaaagcc aacaaatcaa gactaagtaa aatgatgata agtttataat ttttgatttt
     8101 ttccataatg aaaattttac aaaattaaac ttaaa
//
LOCUS       DAZBIH010000065         8083 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.066, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000065 DAZBIH010000000
VERSION     DAZBIH010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8083
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.066"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            68..1318
                     /locus_tag="ACHFOB_001216"
     CDS             68..1318
                     /locus_tag="ACHFOB_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic amino acid transport family protein"
                     /protein_id="HFN5800018.1"
                     /translation="MNTPKWTSHDTRWVLSLFGTAIGAGVLLLPISAGLGGLIPLLVI
                     LVLAFPMTYLAHRNLCRFVLSSSNPKDDITFVAESYFGKGGGFLITLLYFFAILPILL
                     VYSANLTTTLLEFLINQFNFNADLTHAARWWVSFLIVGVLVLISILGENVVTKAMSFL
                     VFPFIIFLFIFSLLLIPQWNSSLFTNVDFSVISTSNFWVTLWLVIPVMVFSFNHSPII
                     SSLACYCKKEYGDYAEPRARKIISLAIILMVFVVMFFVFSCALTFTPEDFASAKDQNI
                     NILTFIANKFPEVSLLAYVGPIVALVAISKSFLGHYLGSQEGLNGILYKASNGKIQGK
                     FAQTLTAIITFAIAWLVAYKNPSVIGIIEAIGGPVLAILLFLMPLYCIYRFDILARFR
                     NKFLDLFILVMGIVAISAAIHDLL"
     gene            1333..2697
                     /locus_tag="ACHFOB_001217"
     CDS             1333..2697
                     /locus_tag="ACHFOB_001217"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003941 - L-serine ammonia-lyase activity
                     [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase"
                     /protein_id="HFN5800019.1"
                     /translation="MSNLSIFKIGVGPSSSHTLGPMLAGNLFCKKVAKKLDEIDRVEV
                     TLYGSLSLTGKGHLSDKAVIWGLNGLEAKNLSAAIQDEVNKNAIENAQIDFCGEKKLC
                     FNYEKDLIFSKDFLPLHENGMKIKAYDCKGGLVDEETYYSVGGGFVLTAAQLEKKGKN
                     SNQNKKKKLDIELNNAKEALELCDKRDWDLAELSYRYELQFHTKEEIRAYCLEIWEVM
                     QEVYYNGTHPNEDYLPGKLHLKRRAKGLKERVAMTADPMGIIDFISLYAIAIAEENAS
                     GAKVVTAPTNGACAVIPAVMLYLKNHTIGFSDEKAIEFLLTAMLIGSFYKKNASISGA
                     EAGCQAEIGSASSMAAAAMATVLGANAFKACNAAEMAMEHHLGLTCDPVAGLVQIPCI
                     ERNAFGAIKAISAARMAMTRKSTPMVSLDEVIETMYETGKDMNYKYKETSLGGLATNL
                     KTVC"
     gene            complement(2705..3226)
                     /locus_tag="ACHFOB_001218"
     CDS             complement(2705..3226)
                     /locus_tag="ACHFOB_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800020.1"
                     /translation="MAFMNFSGFFYARNDLRLFKIEKKNELKSFFYKDYTLSSYKDAL
                     NLNNEIFFYQSLKEGLFKENDEILVSNLGKKIILFRNFTQNCDNFNEAKLKQILLLFF
                     LLLASVFFASLAMINEFGAIDLVFLMICLLLLVMGAINLGLLFKQIRILKSFSKEEMK
                     EFLSQRMKKYTKV"
     gene            complement(3207..4217)
                     /gene="ribD"
                     /locus_tag="ACHFOB_001219"
     CDS             complement(3207..4217)
                     /gene="ribD"
                     /locus_tag="ACHFOB_001219"
                     /EC_number="1.1.1.193"
                     /EC_number="3.5.4.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008703 -
                     5-amino-6-(5-phosphoribosylamino)uracil reductase activity
                     [Evidence IEA];
                     GO_function: GO:0008835 -
                     diaminohydroxyphosphoribosylaminopyrimidine deaminase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     diaminohydroxyphosphoribosylaminopyrimidine
                     deaminase/5-amino-6-(5-phosphoribosylamino)uracil
                     reductase RibD"
                     /protein_id="HFN5800021.1"
                     /translation="MSNFKIQGRQMKEFYMNLALNEAWKYQFLTYPNPAVGCVILDKN
                     GKILAIKAHEKAGLAHAELNAITHAFKSLRPEISLPKEANALHEFICKNHQGVFKDSI
                     AFVTLEPCSHQGKTPPCAKLFSELGFKKIFISVKDGNKIASGGAEFLKKQGIEVEFDI
                     LKEEGKKLLKPFLKWQKGQFKLFKLALSMNGSPFGKIVSNELSRTYAHKIRAVIDLLV
                     VGGETIRKDHPILDARLCKAKAPNLCILSRQNIDNFDKNIPLFKVPNRQIYTQIPSEA
                     KFLMYEGGENFLKTFKDGIDMFLIFQSSSLNDEKNVTIPLNFKPLYRNFLGSDTYGIY
                     EL"
     gene            complement(4420..4507)
                     /locus_tag="ACHFOB_001220"
     tRNA            complement(4420..4507)
                     /locus_tag="ACHFOB_001220"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4471..4473),aa:Ser,seq:tga)
     gene            complement(4529..4602)
                     /locus_tag="ACHFOB_001221"
     tRNA            complement(4529..4602)
                     /locus_tag="ACHFOB_001221"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4568..4570),aa:Cys,seq:gca)
     gene            complement(4621..4709)
                     /locus_tag="ACHFOB_001222"
     tRNA            complement(4621..4709)
                     /locus_tag="ACHFOB_001222"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4673..4675),aa:Leu,seq:taa)
     gene            complement(4719..4793)
                     /locus_tag="ACHFOB_001223"
     tRNA            complement(4719..4793)
                     /locus_tag="ACHFOB_001223"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4759..4761),aa:Gly,seq:gcc)
     gene            complement(4865..5617)
                     /locus_tag="ACHFOB_001224"
     CDS             complement(4865..5617)
                     /locus_tag="ACHFOB_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800022.1"
                     /translation="MLAFFKGLGIGFLCLLLFVAGVVFNVEFLGKKDSNHDLYFSRNI
                     EVSNTLKPDILYANINFWANENLSSKITLDNSEKAEITNTFNQILERSKKENFCSGGS
                     FSLEPNFSYKDGIQTPKGQRFDANLECEFKENQLADFNKLLNDINSIIAKNNFISVST
                     PAIQTKFSKDTLNNNKENLYKELLKTSYEYEKTYSLDLNKTCVLKNLQVNTNANITPR
                     MLNAKSDNIELSSPIISEKEQILSAKALFICK"
     gene            5690..6709
                     /gene="mutY"
                     /locus_tag="ACHFOB_001225"
     CDS             5690..6709
                     /gene="mutY"
                     /locus_tag="ACHFOB_001225"
                     /EC_number="3.2.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0019104 - DNA N-glycosylase activity
                     [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HFN5800023.1"
                     /translation="MQKKELEKLQENLLLWYEKNGRKTLPWRNLQSQNCDESLKHIDR
                     AYGVYISEIMLQQTQVKSVLERFYFPFLQKFPTLESLANANEDELLKAWQGLGYYTRA
                     RNLKKAALECVDKFEAKLPKEVEDLKKLSGIGAYTAGAIACFGYDQKVSFVDGNIRRV
                     LSRLFALENPSMKELEKRAKELLNLNHAFDHNQVLLDIGALVCVSKNAKCGICPLYDF
                     CQGKFHTELYPRAKKILYESVNLNLFLFEFNKKFAIGQSQDKLYKGMYNFPFFKEGEY
                     KLSKDMGFVGEFKHSYTKYKLNIKVYHQILNNENKNYEFKTLKELESTALSALSLKAL
                     KLIKL"
     gene            complement(6695..7954)
                     /locus_tag="ACHFOB_001226"
     CDS             complement(6695..7954)
                     /locus_tag="ACHFOB_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800024.1"
                     /translation="MQELTRTKKIRSIIAASSGNLVEWFDFYIYAFTATYFAHTFSTS
                     DNPVIQQINAFGVFAAGFFMRPIGSWLFGSLADKVGRKKSMVISVVLMALGSFMIAAL
                     PSKDTVGDLAIILLLIARLIQGLSVGGEYGIAATYLSELATEGKRGFYSSFQYVTLIG
                     GQLLAVASISIMFLFFSIDDMKDYAWRILFVIGGILALGSLFVRKMMNESATKLHQHE
                     DRGTLKALCKSWKPFLMVLGVTSGGSLAFYTITTYTKTFMENTGMDKMLVNNLFLGAL
                     FILMIIQPLFGYIGDKIGHKRSLIVFCILALVGIYPIFSLIANNAQNNPSLTFMLVVL
                     LFVILSFYTSVAGIFKAKLFPEHVRALGTGLGYAISNAVFGGSAPWVALQFKNAGIEN
                     GFFIYIAIFTIIMLIATLCLPKKSELN"
BASE COUNT         2678 a         1193 c         1352 g         2860 t
ORIGIN      
        1 aaaaataatt atttataaat attttgctaa aataaaagag atgtaatctt aaatttaagg
       61 aagaataatg aatactccta aatggactag tcacgataca aggtgggttt tatctctttt
      121 tggaacagct attggagccg gcgtactttt gttacctatt agtgctgggc ttggtggatt
      181 gatacctttg ttagttatac ttgttttagc ttttcctatg acttacttag ctcatagaaa
      241 tttatgtcgc tttgtgcttt caagttctaa tccaaaagat gatattactt ttgttgcaga
      301 aagttatttt ggcaagggcg gtggattttt aattacactt ttgtattttt ttgctatttt
      361 acctatttta ttggtttata gtgctaatct tacaacaact ttgcttgagt tcttaatcaa
      421 tcagtttaat ttcaatgcag atcttactca tgctgctcgt tggtgggtga gttttttgat
      481 tgttggagtt ttggttttga tttctattct tggtgaaaat gttgtaacaa aagcaatgag
      541 ttttcttgtt tttcctttta ttatattttt atttattttt tcattgcttt taattccaca
      601 atggaattca tcattattta caaatgttga tttttccgta atttcaacaa gtaatttttg
      661 ggttacttta tggcttgtta ttcctgtgat ggtatttagt tttaatcact ctcctattat
      721 ttcttcactt gcttgttatt gtaaaaaaga atatggtgat tatgctgaac ctcgcgctag
      781 aaaaattatt tctttggcaa ttattcttat ggtttttgtt gtaatgtttt ttgttttttc
      841 ttgtgcttta acctttacac cagaagattt tgcatcagca aaagatcaaa atatcaatat
      901 tcttactttt atagcaaata aatttcctga agtttcttta ctagcttatg ttgggcctat
      961 tgttgcactt gtggctatta gtaaaagttt cttaggacat tatcttggtt ctcaagaagg
     1021 cttaaatggc attttatata aagcaagtaa tggtaaaatt caaggtaaat tcgctcaaac
     1081 tttaacagcg atcattacct ttgctatcgc ttggcttgtt gcgtataaaa atccaagtgt
     1141 tataggaatt atcgaggcta ttggtggtcc tgttttggct attttgcttt tcttaatgcc
     1201 gctttattgt atttatcgtt ttgatatttt ggcaagattt cgtaataaat ttttagatct
     1261 ttttattttg gtaatgggga tagttgcaat ttctgctgca attcatgatc ttttataaat
     1321 taaggataaa aaatgagtaa tttaagcatt tttaaaatag gtgttggtcc ttcttcttct
     1381 catactttag ggcctatgct tgctggaaat ttattttgta aaaaagtcgc taaaaagctt
     1441 gatgaaattg atagagttga ggttactctt tatggttctt tgtcattaac aggtaaagga
     1501 cacttgagtg ataaggctgt aatttggggg ttaaatggcc tagaagctaa aaatttaagc
     1561 gcagcaatac aagatgaagt aaataaaaat gctattgaaa atgctcaaat tgatttttgt
     1621 ggtgagaaaa aactttgttt taattatgaa aaagatttga tattttccaa agatttttta
     1681 cctttacatg agaatggtat gaagattaaa gcttatgatt gtaaaggtgg gttagttgat
     1741 gaagaaactt attattctgt aggtggaggc tttgttttaa cagctgcaca attagaaaaa
     1801 aaaggtaaaa attccaatca aaataaaaag aaaaaactag atatagagct taacaatgca
     1861 aaagaagctt tagagctttg cgataaaaga gattgggatt tagcagagct ttcttatcgt
     1921 tatgaattgc aatttcacac taaagaggaa attcgtgctt attgtcttga aatttgggaa
     1981 gtaatgcaag aagtgtatta taatggtacg catccaaatg aagattattt gcctggaaaa
     2041 cttcatttaa agcgtagagc caaaggactt aaagaaagag tggcgatgac agctgatcct
     2101 atgggcatta tagattttat ttctttatat gctattgcga ttgctgaaga aaatgctagc
     2161 ggagcaaaag ttgtaaccgc gccaacaaat ggagcatgtg ctgttatccc tgctgttatg
     2221 ctttatctta aaaatcatac tataggtttt agcgatgaaa aggctataga gtttttatta
     2281 acagcaatgc ttataggttc tttttataag aaaaatgcaa gtattagcgg agcagaagca
     2341 ggttgtcaag cagaaattgg tagtgctagt tcgatggcag ctgcggctat ggcaacagtt
     2401 ttaggggcta atgcttttaa agcatgcaac gctgctgaaa tggcaatgga acatcatcta
     2461 ggtttaactt gcgatccagt tgcaggactt gtgcaaattc cttgcataga aagaaatgcc
     2521 tttggagcta ttaaggctat aagtgctgct agaatggcaa tgacacgtaa atctactcct
     2581 atggtaagcc ttgatgaggt tatagaaacc atgtatgaaa caggaaaaga tatgaattat
     2641 aaatacaaag aaacttcttt aggtggtctt gctacaaatt taaaaacagt atgctaaagt
     2701 gtttttacac tttagtgtat tttttcatcc tttgacttaa aaattctttc atttcttctt
     2761 tggaaaaact tttaagaata cgaatttgct taaaaagcaa gccaagattg attgctccca
     2821 tcactaaaag caataagcaa atcattaaaa aaacaagatc tatggctcca aattcattaa
     2881 tcatagccaa acttgcaaaa aatacactcg ctaataataa aaaaaataaa agcaatattt
     2941 gttttaattt tgcctcatta aaattatcac aattttgagt gaaatttcta aaaagtatga
     3001 tctttttacc caaatttgaa actaaaattt catcattttc tttaaataag ccttctttta
     3061 aactttgata aaaaaagatt tcattgttta aatttaaagc atctttgtag cttgataagg
     3121 tgtagtcttt gtaaaaaaag gattttaatt catttttctt ttctatttta aataatctta
     3181 aatcatttct cgcataaaaa aatccactaa agttcataaa tgccataagt atcactccct
     3241 aaaaaattcc tataaagtgg cttgaaattt aaaggtattg taacattttt ttcatcattt
     3301 aaacttgaac tttggaaaat caaaaacata tctattccat ctttaaaggt tttgagaaaa
     3361 ttttctccac cctcatacat taaaaatttt gcttcacttg gaatttgggt ataaatttgg
     3421 cggtttggaa ctttaaataa agggatattt ttatcaaaat tatctatatt ttgacggctt
     3481 aagatacaaa gattaggcgc ttttgctttg caaagcctag catctagtat aggatgatct
     3541 tttcttatgg tttctccacc gactacaagc aaatcaatca ccgctctaat tttatgtgca
     3601 taagtgcgac ttagctcatt gcttacgatt ttgccaaaag gcgagccatt catagaaagg
     3661 gctaatttaa aaagtttaaa ttgccctttt tgccatttta aaaaaggttt taaaagtttt
     3721 tttccttctt ctttaagtat gtcaaattca acctctatgc cttgtttttt taaaaattca
     3781 gccccaccac ttgcgatttt atttccatct ttaacgctga tgaaaatttt tttaaaacct
     3841 agctcgctaa agagttttgc acaaggaggc gtttttcctt gatgagagca aggctcaagt
     3901 gtgacaaaag ctatgctatc tttaaataca ccttgatggt ttttgcaaat aaactcatgc
     3961 aaggcgtttg cttctttagg caatgaaatt tcaggtctta agcttttaaa agcatgagtt
     4021 atggcattaa gttctgcatg agctaatcca gctttttcat gagcttttat ggctaaaatt
     4081 tttccatttt tatctaagat tacacagcct acagccggat ttggataggt taaaaactga
     4141 tatttccaag cctcatttaa ggctaaattc atataaaatt ctttcatttg cctaccttgt
     4201 attttaaaat ttgacatatt tttaaaattt tatatttttg ttttaagata ataaattcta
     4261 aattttccat ttgtatttct tatttttagt tatattagtt atagtttttc taagtttttt
     4321 aggatataac aaaaatagta agactgaagt attatttttc atttgtagta tcctttataa
     4381 tttcaggaat gatataattg ataaactaga aagtcttggt ggccgggaga aagggattcg
     4441 aacccctgga ggtgtgaccc tcaacggttt tcaagaccgc cgctttcgac cactcagcca
     4501 tctcccgata aagtaaagtt ttgccttttg gaggcgacat ccggattcga accggagatc
     4561 aaggctttgc aggcccatgc cttaccgctt ggctatgtcg ccctgataat gttgaaaaag
     4621 tggtgcccga ggccggactt gaaccggcac ggaagaaaaa ttccgaggga ttttaagtcc
     4681 cttgtgtcta ccaattccac cacccgggcg ggtgattatg gagcgggaaa cgagattcga
     4741 actcgcgacc ccaaccttgg caaggttgtg ctctacccct gagctattcc cgcataaatt
     4801 tctgaaagaa ttgaagataa aagtatagca aaataaactt aaaaggagtt tattttgcct
     4861 taagttattt gcaaataaat aaagctttcg cgcttaaaat ttgttctttt tcgctgataa
     4921 ttggagatga aagttctata ttgtcagatt ttgcatttaa cattctaggt gtgatattgg
     4981 catttgtatt tacttgtaaa tttttcaata cacaagtttt attaagatct aaagagtaag
     5041 ttttttcata ttcgtatgat gtttttaaaa gctctttgta gagattttct ttgttgttgt
     5101 ttagtgtatc ttttgaaaat tttgtttgta tggctggtgt tgaaacgctg atgaaattat
     5161 ttttagctat gatagaattg atgtcattta aaagcttgtt aaaatctgca agttggtttt
     5221 ctttaaattc acattctaaa ttcgcatcaa atctttgacc ttttggagtt tgtataccat
     5281 ctttatagga aaaattaggt tctaaagaaa aacttcctcc gctacaaaaa ttttcttttt
     5341 ttgagcgttc taaaatttga ttgaaagtat ttgtgatttc ggctttttca ctattgtcta
     5401 atgtgatttt tgagcttaaa ttttcatttg cccaaaaatt aatatttgca tataaaatat
     5461 cgggttttag tgtattgctt acttctatat ttcttgaaaa atataaatca tgattagagt
     5521 cttttttgcc taaaaattct acattaaaaa ctactcctgc aacaaaaagt aataaacata
     5581 aaaaacctat acctaaacct ttaaaaaaag ctaacatgga tatccttaat aatttaattt
     5641 gagctaattt tagcaaaaaa ttttaaaatt ttttgttata ctctcattta tgcaaaaaaa
     5701 agagcttgaa aaactacaag aaaatttact tctttggtat gaaaaaaatg gacgcaaaac
     5761 tttaccttgg cgtaatttac aaagtcaaaa ttgtgatgaa agtttaaagc atattgatag
     5821 agcttatgga gtttatatca gcgaaattat gcttcagcaa actcaagtta aatcagtttt
     5881 ggaaaggttt tatttcccct ttttgcaaaa atttcctact ttagaaagtt tggctaatgc
     5941 taatgaagat gagcttttaa aggcttggca aggacttggt tattacactc gtgctagaaa
     6001 tttaaaaaag gcagctttag aatgtgtgga taagtttgaa gctaaattac ccaaagaagt
     6061 tgaggatcta aaaaaattaa gcggtatagg agcttataca gcaggtgcta tagcttgttt
     6121 tggttatgat caaaaggttt cttttgttga tggtaatata cgccgtgtgc tttctcgtct
     6181 ttttgcttta gaaaatccta gcatgaaaga acttgaaaaa agagctaaag agcttttaaa
     6241 tttaaatcat gcttttgatc ataaccaagt cttgcttgat ataggggctt tggtttgtgt
     6301 gagtaaaaat gcaaagtgtg ggatttgtcc tttgtatgat ttttgtcaag gcaaatttca
     6361 tacagagctt tatccaagag ctaaaaaaat actttatgag agtgtaaatt taaatctttt
     6421 tttgtttgaa tttaataaaa aatttgccat agggcaaagc caagataagc tttataaggg
     6481 tatgtataat tttccttttt ttaaagaagg agagtataaa ctttctaaag atatgggttt
     6541 tgtaggggag tttaagcaca gctatactaa gtataaactt aatatcaagg tttatcatca
     6601 aattttaaac aatgaaaata aaaattatga atttaaaacc ttaaaagagt tagaaagtac
     6661 cgcactttcg gcactttctt taaaagcgtt aaaattaatt aagctctgat tttttaggca
     6721 aacataaagt agctataagc atgatgattg taaaaatagc tatatatata aaaaagccat
     6781 tttctatacc tgcattttta aattgtaaag caacccaagg agcagatcct ccaaaaacag
     6841 catttgaaat agcataaccc aaacctgtcc ctaaagctct tacatgttca ggaaaaagtt
     6901 ttgctttaaa aatcccagca actgaagtat aaaaacttaa aataacaaac aataatacca
     6961 ccaacataaa tgtcaaagaa ggattatttt gtgcgttatt ggctataagt gaaaaaatag
     7021 gataaattcc taccaatgcc aaaatacaaa atacaattaa agatcgtttg tgacctattt
     7081 tatctcctat atatccaaaa agaggttgaa tgatcattag tataaataaa gcacctaaga
     7141 aaagattatt aacaagcatt ttatccatac ccgtattttc cataaaagtt ttagtataag
     7201 ttgtaatagt ataaaaagct aaagaacctc cagaagtaac cccaagcacc attaaaaaag
     7261 gtttccaaga tttgcataat gcttttaaag taccacgatc ttcatgctgg tgaagttttg
     7321 tagcactttc attcatcatt tttcttacaa aaagcgagcc tagtgctaaa attccgccta
     7381 ttacaaaaag tattctccaa gcataatctt tcatatcatc aatgctaaaa aataaaaaca
     7441 ttatactaat gcttgcaacg gccaaaagtt gaccgcctat tagggttaca tactgaaaag
     7501 atgagtaaaa accgcgtttt ccttctgtag caagttctga aagataagta gctgctatgc
     7561 catactcccc gcctacacta agaccttgaa tgagtcttgc tattaaaagt aagataatag
     7621 caagatctcc cactgtatct ttgcttggca aggctgctat cataaaagag cccaaagcca
     7681 ttaaaaccac tgatataacc atagattttt tacgacctac tttatcagct aaagagccaa
     7741 aaagccaaga gcctatagga cgcataaaaa accctgctgc aaaaacccca aaggcattga
     7801 tttgctggat aacaggatta tctgaagttg aaaaagtatg agcaaaataa gttgctgtaa
     7861 aagcgtagat ataaaagtca aaccactcta ctaaatttcc gctacttgca gcaataatag
     7921 agcgaatttt tttcgtgcga gtaagctctt gcataaaccc ttccttaatt ttagattttt
     7981 atttaagtat agtgtgattt ttgtttaata tatttaaaaa taaagaagag aaataaaaaa
     8041 gataaaaata tcgataaaaa tgttacatat tttaataaat ttc
//
LOCUS       DAZBIH010000066         8066 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.067, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000066 DAZBIH010000000
VERSION     DAZBIH010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8066)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8066)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8066
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.067"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..760
                     /locus_tag="ACHFOB_001227"
     CDS             <1..760
                     /locus_tag="ACHFOB_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800025.1"
                     /translation="YCFILFLSLVLSSNLLANNFSQKKVIKIEKSADSFEVIDLNQNV
                     ANPNLNQQKALFDSSTLIEKKSQITKDKDIDFAIVLTSRKNFGYFLDGFRVSDKEFST
                     LFAKNLIQSLKLNWVNSAANGIYQSPKTLSYFSPNDAKLINVSPFLTQEKDKAKMYAK
                     FTDYVVVVNLQDFYVNITNYFITTSKEGVANVNFKIISTSNGKILVAKNAELNLTLKN
                     QDAKQNYQDIVNQMPKMLASVIDNEIKKLKLTIN"
     gene            complement(783..1559)
                     /locus_tag="ACHFOB_001228"
     CDS             complement(783..1559)
                     /locus_tag="ACHFOB_001228"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008762 - UDP-N-acetylmuramate
                     dehydrogenase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HFN5800026.1"
                     /translation="MIIDFKKYSSVRIGNEFEVLVLDQICDFDGFLIGGANNLLISPK
                     PKNIGILGDGFDFIQILDQNKDFIHLRIGCKTKSSKIYRFTKENNLKGFEYLSKIPGT
                     LGGLLKMNAGLKGECISQNLIKIATSQGEILRENINFDYRFCPLNMPFFWAEFKLNFG
                     FDTLKDEALKNARSNQPSGASFGSIFKNPKNDFAGRLIEAVGLKGFSKGDAMLSDKHA
                     NFLINKKNASFEDAFFLIELARKKVFEEFGINLENEVIII"
     gene            complement(1556..1825)
                     /gene="fliQ"
                     /locus_tag="ACHFOB_001229"
     CDS             complement(1556..1825)
                     /gene="fliQ"
                     /locus_tag="ACHFOB_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0044780 - bacterial-type flagellum assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FliQ"
                     /protein_id="HFN5800027.1"
                     /translation="MDESTLVALGVQTFKITLLLSLPMLLAGLIAGLVISIFQATTQI
                     NEMTLSFVPKIILVVVILIFLMPWMTTTMIDFTENILNQIPTFIK"
     gene            complement(1837..2697)
                     /locus_tag="ACHFOB_001230"
     CDS             complement(1837..2697)
                     /locus_tag="ACHFOB_001230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis family protein"
                     /protein_id="HFN5800028.1"
                     /translation="MKKITIAHSPDADDIFMYMAIKFGWIGNDFAYENTALDIQTLNE
                     FALKNEFDATAISFGLYPLIASEYALLRTAVSFGEGYGPKLIKKKDTHLKRNFKVALS
                     GANTTNALIFRMKYPEARIIYKNFLDIENVVLSGEVDAGVLIHESILEFDQSLCVEAE
                     LWDIWLEFAKENLPLPLGGMALRRSLPLSDAIKIERDLTNAVKIADANRKILAPMLME
                     RKLIRVDEEKLDTYLNLYANKNSISMNQTQLLAVDTLFKLGYDYKFYDKIIHVNDYLI
                     PSEYEEARNS"
     gene            2804..3835
                     /gene="recA"
                     /locus_tag="ACHFOB_001231"
     CDS             2804..3835
                     /gene="recA"
                     /locus_tag="ACHFOB_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003697 - single-stranded DNA binding
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008094 - ATP-dependent activity, acting
                     on DNA [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HFN5800029.1"
                     /translation="MDDNKRKSLDAALKSLDKTFGKGTILRLGDKEVEQIDSIGTGSV
                     GLDLALGIGGVPKGRIIEIYGPESSGKTTLTLHIIAECQKAGGVCAFIDAEHALDVKY
                     AKNLGVNTDDLYVSQPDFGEQALEIVETIARSGAVDLIVVDSVAALTPKAEIEGDMGD
                     QHVGLQARLMSQALRKLTGIVHKMNTTVIFINQIRMKIGAMGYGTPETTTGGNALKFY
                     ASVRLDVRKVATLKQNEEPIGNRVKVKVVKNKVAPPFRQAEFDVMFGEGLSREGELID
                     YGVKLDIVDKSGAWFSYKDKKLGQGRENSKAFLKENPEIADEITKAIQNSMGIEGMIS
                     GSEDDEGEE"
     gene            3835..5079
                     /gene="eno"
                     /locus_tag="ACHFOB_001232"
     CDS             3835..5079
                     /gene="eno"
                     /locus_tag="ACHFOB_001232"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000015 - phosphopyruvate hydratase
                     complex [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0004634 - phosphopyruvate hydratase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HFN5800030.1"
                     /translation="MLVIEDVRAYEVLDSRGNPTVKAEVTLSDGSVGAAIVPSGASTG
                     SKEALELRDNDERFGGKGVLKAVANVNETIADEILGLDAFNQTQLDDTLRELDGTNNY
                     SNLGANATLGVSMATARAAAAALGMPLYRYLGGANASILPVPMCNIINGGAHANNNVD
                     FQEFMIMPFGFTSFKEALRSVCEIYAILKKELANSGHSTALGDEGGFAPNLANNTEPI
                     DLLMTCIKKAGYENRVKIALDVASTEFFKDGKYHMEGKAFSSEDLIERYVELCAKYPI
                     CSIEDGLAENDFEGWIKLTEKLGNKIQLVGDDLFVTNEDILREGIIKKMANAVLIKPN
                     QIGTITQTMRTVRLAQRNNYKCVMSHRSGESEDAFIADFAVALNTGQIKTGALARGER
                     TAKYNRLLEIELESDEYLGEKL"
     gene            5145..5348
                     /locus_tag="ACHFOB_001233"
     CDS             5145..5348
                     /locus_tag="ACHFOB_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800031.1"
                     /translation="MIFWAFLVVIGAIYFGNMFFGQYSLDALLSLENTKEELNKKIIL
                     LKEQNAKAQKDYFELKGLYPNEN"
     gene            5338..6000
                     /gene="cgpA"
                     /locus_tag="ACHFOB_001234"
     CDS             5338..6000
                     /gene="cgpA"
                     /locus_tag="ACHFOB_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoprotein CgpA"
                     /protein_id="HFN5800032.1"
                     /translation="MKTRILAIFFIFTSLLYADENPFKTDQNITLVAPPEFQKEEVKF
                     NSSARILKSITFNYINLDGSEDKIDLDVNKSIDWHDTYTISRFKSPDPSKVLDISVTI
                     PEKNSSKQESNSTANVEIPLQVAKIYDFISYAVYKNKIKLNTSDEMITDFSVGNPSKI
                     VIDFRSNLISPTKNIRLSNSIFKRIDFGSHKGYYRLVIYLDGTYNYNIQKDATGYMIN
                     LL"
     gene            6000..6848
                     /locus_tag="ACHFOB_001235"
     CDS             6000..6848
                     /locus_tag="ACHFOB_001235"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA ligase"
                     /protein_id="HFN5800033.1"
                     /translation="MRFVFLICCACLVFANEILLLSKFDKQDFNSKDFNTYLMSEKLD
                     GVRGIWDGKYLKTRQNYKIKTPDFFTKNFPPFTIDGELWIARNKFDEISALIRSGDSN
                     LTLWKEVTYNIFDVPNACEEFKISTCTLKNRLAVLEEYLQKYPSAYIKIIPQIPVENQ
                     NNLNQFYESIIKNQGEGIVIRKNLSPYEKGRSKNAMKLKPYDDAECELVGFRKGKGKF
                     ENQVGALLCKMPNGQIIKIGSGLKDKDRKNPPKIGSIITYKFNGLTKNSLPRFPVFLR
                     IRDENP"
     gene            6891..6968
                     /locus_tag="ACHFOB_001236"
     tRNA            6891..6968
                     /locus_tag="ACHFOB_001236"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:6926..6928,aa:Pro,seq:tgg)
     gene            6993..7069
                     /locus_tag="ACHFOB_001237"
     tRNA            6993..7069
                     /locus_tag="ACHFOB_001237"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7027..7029,aa:His,seq:gtg)
     gene            7074..7150
                     /locus_tag="ACHFOB_001238"
     tRNA            7074..7150
                     /locus_tag="ACHFOB_001238"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7108..7110,aa:Arg,seq:tcg)
     gene            7165..7241
                     /locus_tag="ACHFOB_001239"
     tRNA            7165..7241
                     /locus_tag="ACHFOB_001239"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7199..7201,aa:Arg,seq:tct)
     gene            7247..7331
                     /locus_tag="ACHFOB_001240"
     tRNA            7247..7331
                     /locus_tag="ACHFOB_001240"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:7281..7283,aa:Leu,seq:tag)
     gene            7507..7922
                     /locus_tag="ACHFOB_001241"
                     /pseudo
     CDS             7507..7922
                     /locus_tag="ACHFOB_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345036.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2885 a         1186 c         1383 g         2612 t
ORIGIN      
        1 gtattgtttc attttgtttt taagtttagt tttaagttct aatcttttag caaataattt
       61 ttctcagaaa aaagttatta aaattgaaaa aagtgcagat agctttgaag taatagatct
      121 aaatcaaaat gttgcaaatc caaatttaaa tcaacaaaaa gcattgtttg atagttctac
      181 tttaattgaa aaaaaatcgc aaatcactaa agataaggat attgattttg ctattgtatt
      241 aacttctagg aaaaatttcg gttatttttt agatggtttt agggtgagtg ataaggaatt
      301 ttctacatta tttgctaaaa atttgattca aagtttaaag cttaattggg ttaattctgc
      361 tgcaaatggt atttatcaaa gtcctaaaac tttgtcatat tttagcccta atgatgcaaa
      421 acttataaat gtaagtcctt ttttaacaca agaaaaagat aaggctaaaa tgtatgctaa
      481 atttacagat tatgttgtgg tggtaaattt gcaagatttt tatgtaaata ttacaaatta
      541 ttttatcaca actagtaaag agggtgtagc taatgttaat tttaaaatta tttctacaag
      601 caatggaaaa attcttgtag caaaaaatgc agaattaaat ttgacattaa aaaatcaaga
      661 tgcaaaacaa aattatcaag atattgtaaa tcaaatgcca aaaatgttag ctagtgttat
      721 agataatgaa ataaaaaaat taaaattaac tatcaattaa tttaaagata tattgaaaat
      781 ttttagataa taatcacttc attttctaag tttatgccaa attcctcaaa gacttttttt
      841 ctagccaatt cgataagaaa aaacgcatct tcaaaacttg catttttttt attgattaaa
      901 aaatttgcgt gtttatcgct taacatagca tctcccttgc taaatccttt aagtcctaca
      961 gcttcgatta aacgtcctgc aaagtcgttt tttggatttt taaagataga gccaaagctt
     1021 gctccactag gttggttgct tcttgcattt tttaaagctt catctttaag ggtatcaaag
     1081 ccaaaattta atttaaattc agcccaaaaa aaaggcatat ttaaaggaca aaaacgataa
     1141 tcaaaattta tattttctct tagaatttcg ccttgagaag tagcaatttt gattaaattt
     1201 tgactgatac actctccttt aagccctgca ttcattttca aaagcccacc aagtgtgcca
     1261 ggaattttgc ttaaatactc aaaaccctta agattatttt ctttagtaaa gcgatatatt
     1321 ttacttgatt ttgttttgca gcctatgcga agatgtataa aatctttatt ttgatctaaa
     1381 atttgtataa aatcaaaacc atctcctaaa attcctatat ttttaggttt tgggctaatt
     1441 aaaaggttat ttgcaccacc tattaaaaaa ccatcaaaat cacaaatttg atccaaaact
     1501 aaaacttcaa attcgtttcc tatacgcaca gaagagtatt ttttaaaatc aatgatcatt
     1561 tgataaaagt tggaatttga tttagtatat tctcagtaaa atcaatcata gttgtagtca
     1621 tccaaggcat taaaaagatt aaaataacca caaccaagat gattttagga acaaaagaaa
     1681 gtgtcatttc attaatctgt gtagttgctt gaaaaatact gatcacaagc cctgcaataa
     1741 gtcctgccaa aagcataggc aaggaaagta aaagtgtgat tttaaaggtt tgcactccaa
     1801 gagcaactaa ggtactttcg tccattttta tcctttttaa gaatttctag cttcttcgta
     1861 ttcgctaggg ataagataat catttacatg tatgatttta tcataaaatt tataatcata
     1921 tcctagttta aaaagcgtat ctacagctaa aagttgagtt tgattcatgc taatagagtt
     1981 tttattggca tataaattaa gataagtatc aagtttttct tcatcaacac ggataagttt
     2041 tctttccata agcatagggg ctaaaatttt acgatttgca tcggcaattt ttacagcatt
     2101 ggttaaatct ctttcgatct taatcgcatc gcttaaaggc aaagaacgac gcaaagccat
     2161 tccacctaaa ggcaaaggca aattttcttt agcaaattca agccatatat cccaaagttc
     2221 tgcttccacg caaagacttt gatcaaattc taaaatgctt tcatggatca aaactcctgc
     2281 atctacttcg ccacttaaaa ctacattttc aatgtctaaa aaattcttat aaataattct
     2341 tgcttcaggg tatttcatac gaaaaatcaa agcattggtg gtatttgctc cactcaaagc
     2401 gactttaaaa tttcttttta aatgcgtgtc ttttttcttg atgagttttg gcccataacc
     2461 ttcaccaaaa ctcactgctg tgcgtaaaag cgcatactca gaagcgatta aaggataaag
     2521 cccaaaagaa atagccgtag catcaaattc atttttcaag gcaaattcat ttaaagtttg
     2581 tatatctaaa gctgtatttt cataagcaaa atcattccct atccacccaa atttaatagc
     2641 catatacata aaaatatcat cagcatcagg agaatgtgca atagtaattt ttttcatcta
     2701 tgcttccttg taaatctttg ctttaattct agcaaaataa atcattattt aattttattt
     2761 tgttagaatt ctagctaaaa atttagaatt tttaaggaaa gttatggatg ataataaaag
     2821 aaaatctcta gacgctgccc taaaaagttt agataaaacc tttggaaaag gcactatttt
     2881 aagactaggg gataaagaag ttgagcaaat cgatagcata ggcacaggtt cagttgggct
     2941 tgatcttgct ttaggtatag gcggtgttcc aaaaggaaga attatagaaa tttatggacc
     3001 tgaaagttca ggtaaaacca ctctaacttt acatattatc gcagaatgcc aaaaagcagg
     3061 tggagtttgt gcttttatcg atgcagaaca tgcgcttgat gtaaaatatg ctaaaaattt
     3121 gggtgtaaat acagatgatt tgtatgtttc tcagcctgat tttggagaac aagccttaga
     3181 aattgtagaa actatagcaa gaagtggcgc agtagatctt atcgtagtag atagcgttgc
     3241 agcacttact ccaaaagcag aaattgaagg cgatatgggc gatcaacatg taggacttca
     3301 agcaagactt atgtctcaag ctctaagaaa acttacaggt atagttcata aaatgaatac
     3361 cacagtaatt tttatcaacc aaattcgtat gaaaatcggt gctatgggtt atggcactcc
     3421 tgaaactaca acaggtggaa atgcattaaa attctatgct tctgtgcgtt tagatgttag
     3481 aaaagtagca accttaaaac aaaacgaaga acctatagga aaccgcgtta aagtaaaagt
     3541 agttaaaaat aaagttgctc ctccattcag acaagctgaa tttgatgtga tgtttggaga
     3601 gggtttaagc cgtgaaggtg aattgatcga ttatggtgta aaacttgata tcgtagataa
     3661 aagtggtgcg tggttttctt ataaagataa aaaacttgga caaggtagag aaaattcaaa
     3721 agctttctta aaagaaaacc ctgaaattgc agatgaaatc acaaaagcaa ttcaaaattc
     3781 tatgggaata gaaggtatga tcagcggtag cgaagatgac gaaggagaag aataatgtta
     3841 gtaattgaag atgttagagc ctatgaagtt cttgatagta gaggaaatcc aaccgtaaaa
     3901 gccgaagtta cgctaagcga tggaagtgta ggtgcggcca tagttccaag tggtgcaagt
     3961 acaggttcaa aagaagcctt agaattgcgt gataatgatg aaagatttgg cggaaaaggc
     4021 gttttaaaag ctgttgcaaa tgtcaatgag accattgcag atgaaatttt aggactagat
     4081 gcttttaatc aaactcaact tgatgatact ttgcgtgagc ttgatggaac aaataattac
     4141 tcaaatttag gtgcaaatgc gactttaggc gtatctatgg caacagctcg tgcggctgca
     4201 gctgctttgg gaatgccttt atatcgctac ttaggtggtg caaatgcgag cattttaccc
     4261 gtgccaatgt gtaatatcat aaatggcggt gctcatgcaa acaacaatgt agattttcaa
     4321 gaatttatga tcatgccttt tggttttact agttttaaag aagctttgcg ttcagtttgt
     4381 gaaatttatg cgatattaaa aaaagaactc gcaaattctg gacattctac ggctttaggc
     4441 gatgaaggcg gttttgctcc aaatttagct aacaacacag aacctatcga tcttttaatg
     4501 acttgtatca aaaaagcagg ttatgaaaat cgtgtaaaaa tcgctcttga tgtggcaagt
     4561 acagaatttt tcaaagatgg caaatatcac atggaaggca aggctttttc aagcgaggat
     4621 ttgatcgaac gctatgtaga actttgtgca aaatatccaa tttgcagtat cgaagatggc
     4681 ttagctgaaa atgactttga aggttggatc aagcttactg aaaaattggg caataaaatt
     4741 cagcttgtag gcgatgattt atttgtaact aatgaagata ttttaagaga aggcatcatc
     4801 aaaaaaatgg caaatgctgt gcttattaaa ccaaatcaaa tcggaactat tacccaaact
     4861 atgagaactg tgcgtttagc gcaaagaaat aactataaat gtgtgatgag tcatagaagt
     4921 ggcgaaagtg aagatgcttt tatagcagat tttgctgtag ctttaaatac aggacaaatc
     4981 aaaacaggag ccctagcaag aggtgaaaga accgcaaaat acaatcgctt acttgaaatt
     5041 gaacttgaaa gcgatgaata cttaggagaa aagctctgag tgatttactt aaagaatacg
     5101 acgaaagcac aagaaaaaaa agtttttata cccatgttat aaaaatgatt ttttgggctt
     5161 ttcttgttgt aattggagcg atttattttg gcaatatgtt ttttgggcag tattctttag
     5221 atgctttatt aagcttagaa aataccaaag aagagcttaa taaaaagatt attttgctca
     5281 aagaacaaaa tgctaaagca caaaaagatt attttgaatt aaaaggatta tacccaaatg
     5341 aaaactagaa ttttggcaat attttttatt tttacctctc ttttatatgc tgatgaaaat
     5401 cctttcaaga cagatcaaaa tataaccttg gttgctccac ctgaatttca aaaagaggaa
     5461 gttaaattta attctagtgc aagaatttta aaaagcatca cttttaatta tatcaattta
     5521 gacggaagtg aagataagat cgatttagat gtcaataaaa gtattgattg gcacgatact
     5581 tatactatat caagatttaa aagccctgat ccttcaaaag tacttgatat ttcagttact
     5641 atacctgaaa aaaatagctc taaacaagaa tcaaactcaa cagctaatgt tgaaatacct
     5701 ttacaggttg caaagattta tgattttatt tcttacgcgg tttataaaaa caaaataaaa
     5761 cttaacacta gtgatgaaat gatcacagat ttttcagtag gaaatccaag caaaatcgtt
     5821 atagatttta gatctaattt gattagccct acaaaaaaca tacgccttag caattctatt
     5881 tttaaacgca tagactttgg atctcataaa ggatattatc gacttgtaat atatcttgat
     5941 ggaacttata attataatat tcaaaaagat gcaactggat atatgattaa tctgctttga
     6001 tgaggtttgt ttttttaata tgttgtgctt gtttagtttt tgctaatgaa attttacttc
     6061 ttagcaaatt cgataagcaa gattttaact ctaaagattt taatacttat ttgatgagcg
     6121 aaaaactcga tggggtgcgt ggaatttggg atggaaaata tctaaaaact cgccaaaatt
     6181 acaaaataaa aactcctgac ttttttacaa aaaatttccc tccttttact attgatggtg
     6241 agctttggat agcaagaaat aaatttgatg aaatttcagc tttaattcgt agtggcgata
     6301 gcaatttgac cttatggaag gaagtaactt ataatatttt tgatgtgcca aatgcttgcg
     6361 aagaatttaa aatttctact tgcaccctta aaaatcgttt ggctgtttta gaagagtatt
     6421 tgcaaaaata tcctagtgcc tatataaaaa ttattcctca aattccagtt gaaaatcaaa
     6481 ataatttaaa tcaattttac gaaagcatta taaaaaatca aggtgaaggt attgtcatac
     6541 gcaaaaattt aagtccttat gaaaaaggca gaagtaaaaa tgctatgaaa ttaaaaccct
     6601 atgatgatgc agagtgtgag ttagtaggat ttcgcaaggg caagggtaaa tttgaaaatc
     6661 aagtaggtgc tctgctttgt aaaatgccta atggacaaat cattaaaata ggcagtggtt
     6721 taaaagataa agatagaaaa aatcctccaa aaattggtag tattataact tataaattta
     6781 atggattgac caaaaattcc ttacctcgct ttccagtttt tttaagaata agggatgaaa
     6841 atccttgact ttaaaattat tttgtgataa aatatttcct tttatttatt cggggtgtag
     6901 cgcagtctgg ttagcgcact tggtttggga ccaaggggcc gaaggttcga atcctttcac
     6961 cccgaccatt ttttataaat ttatacaaaa tggtgagtgt agctcagtcg gttagagcat
     7021 cagattgtgg tcctgagggt cgtgggttca attcccatca ctcaccccac taagcgctcg
     7081 tagctcaact ggatagagcg acagacttcg gatctgtagg ttatgggttc gattcctatc
     7141 gggcgcacca ccaagatttt atatgcgttc atagctcagc tggatagagc aacggccttc
     7201 taagccgtag gtcagaggtt cgaatcctct tgggcgtacc actttagcgg atgtggtgaa
     7261 attggcagac acgccagact taggatctgg tgcagcaatg cgtgaaggtt caagtccttt
     7321 catccgcacc acttactttt atcattttca aacaagagtt gatttctcat aaatttttat
     7381 ttcattttaa aatttcttat gattgttaga taaaatgcaa atttaattta gataaattta
     7441 aaaattatct tgcaaaagat ttgaaaaata attaaaatat acaaaattca attcaaggag
     7501 attaaaatga aaaaattagc ttcagcttta gcagctttag ttgctttaaa tgtgtcagca
     7561 tttgcagatt tgatagttat taataaaaaa atttagttcc agtttcagca agcgaaatgc
     7621 aaaacaaata tttccaagag agtatcaaac caattataga tcagccactt tttaaaaagg
     7681 caacttttta tgaagcagat attgttgcaa aagttgatcc aaaagaatat aattcaaccc
     7741 aagctataat ataaaaagaa tatttagata aaagcaaata tgtttattat aagacagttc
     7801 ttatattaac tagtgatggt aaaagagcta agctctctac tctttcttgc gaaattgcaa
     7861 gttttgataa gaaggggtat ttatgtggag gaacaagcga tcataattat tctattaagt
     7921 aaatattgca aataaaaatc cgccttgagt tttcactctt agtggaaatt cactattaga
     7981 acatactatg aaaaaacata gtaagtataa agtatatcta aattttaagc tttttaagtt
     8041 aaaaatttct agttttttaa atcgtt
//
LOCUS       DAZBIH010000067         8038 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.068, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000067 DAZBIH010000000
VERSION     DAZBIH010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 8038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8038
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.068"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            112..2454
                     /locus_tag="ACHFOB_001242"
                     /pseudo
     CDS             112..2454
                     /locus_tag="ACHFOB_001242"
                     /inference="COORDINATES: protein motif:HMM:TIGR02166.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0009389 - dimethyl sulfoxide reductase
                     activity [Evidence IEA];
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DMSO/selenate family reductase complex A
                     subunit"
     gene            2465..3121
                     /locus_tag="ACHFOB_001243"
     CDS             2465..3121
                     /locus_tag="ACHFOB_001243"
                     /EC_number="1.8.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002938395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMSO/selenate family reductase complex B
                     subunit"
                     /protein_id="HFN5800034.1"
                     /translation="MKLEENSQFGFMLDQSKCVGCRTCSLSCKDYKNMPVGINFRRVF
                     ETEGGNWTAKEDGSFEQSVFAYYTSISCNHCSNPSCLKACPTGATMKIKWGIVAIDDS
                     MCIGCKACAMACPYGAPQFNHESGHMSKCDGCYERLKEGKNPICVDSCPFRALKAGDI
                     TKLREEHGNLASITPLPDASITHPNLCIVPEKHSLPSGNKSTIFHLPQNYQGVKNDII
                     "
     gene            3108..3974
                     /locus_tag="ACHFOB_001244"
     CDS             3108..3974
                     /locus_tag="ACHFOB_001244"
                     /inference="COORDINATES: protein motif:HMM:NF016838.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dimethyl sulfoxide reductase anchor subunit
                     family protein"
                     /protein_id="HFN5800035.1"
                     /translation="MTSFNHILSEMPLVLFTILVQAVIGLSLVYAPAFINGYKNYANL
                     KSFGLALGIAMVVAFIPSFFHLNDITHIFNVLNRMGVFYANNEWHIGWMNNEILFVSL
                     VCALDFLLYLKTSNWVFYLTLICGILGLFFMSGAYGSMQESVPTWDFKITLLYFFASA
                     IFLGAIVYYCFFENSKHERKMSFFTGLIGIGLLSTAIVLQTLHVGQTWIMGLVNPFEL
                     LGGTYDWFISLSFAFLGLGIVTWYLHNYLHEKFKSKFFACFALLCAFLGVFTTRMLFY
                     GLISTQIMLGHS"
     gene            3974..4531
                     /locus_tag="ACHFOB_001245"
     CDS             3974..4531
                     /locus_tag="ACHFOB_001245"
                     /inference="COORDINATES: protein motif:HMM:NF014651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone TorD family protein"
                     /protein_id="HFN5800036.1"
                     /translation="MQKLAIDIFINFLQNPPNHFLLEKLKKEEFWQNWFLKNNSKLQC
                     TALKLLSSSNEDDKLIASDFTSLFLSDVDYVKAPPFASFYLDENKEIYSDNSDKVKQI
                     FAQNNFFSFFNEEPADSLINELLFISFLIKKQDDITLQKFLKEEFFIWFNMWSFDVIN
                     KAKTHFYKALTMLMQDFFNQLNTKF"
     gene            4598..5020
                     /gene="cgb"
                     /locus_tag="ACHFOB_001246"
     CDS             4598..5020
                     /gene="cgb"
                     /locus_tag="ACHFOB_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-domain globin Cgb"
                     /protein_id="HFN5800037.1"
                     /translation="MTKEQIQIIKDCVPILQKNGEDLTNEFYKIMFNDYPEVKPMFNM
                     EKQISGEQPKALAMAILMAAKNIENLENMRSFVDKVAITHVNLGVKEEHYPIVGACLL
                     KAIKNLLNPDEATLKAWEVAYGKIAEFYIDIEKKLYDK"
     gene            complement(5040..6671)
                     /locus_tag="ACHFOB_001247"
     CDS             complement(5040..6671)
                     /locus_tag="ACHFOB_001247"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_function: GO:1904680 - peptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015833 - peptide transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug ABC transporter permease/ATP-binding
                     protein"
                     /protein_id="HFN5800038.1"
                     /translation="MPFIIELLKQNKLKLISFLLFSFITSAVGVLTLVFINDYLLKNA
                     QNIPIFYFIVLLLIFFISSTIVELGLSIFGQNFIFKMQRRVVKQILDTPLLRVAKVGK
                     ARILASLGSDVRNISFGLLRLPDFLQSSILILCTSVYLCYLSPQIFALCVVWIMVIFI
                     TNNFLMMKVYQYFRKARENDDALQNNYQNILDGHKELLINRDRAKLYYEDEFENNARL
                     KKKNSTLGNLFNNLSNNWTNVTLLALVGVEFYLALKFEWASVADATTIALSILFLRTP
                     LVSMIGSFPTLLLAKIALDKIAKLELDDYIEGFKKTHYISEWKKISFRNTQFAYEENF
                     HLNPVNIELKKGELVFLIGKNGSGKSTFCMLLTGLFKPSKGGIYVDDTLIDDKNLDEY
                     RSLISAVFSDFHLFTKTLNKENFASEEKIAFWLEFLELKDKTSVKDNELTLTKLSTGQ
                     KKRLAMLIALLEERDILVLDEWAADQDPVFRRFFYKKLLPLLKEQGKTIFAITHDDAY
                     FDSADRIFLAQNGEISELKGENIKELAKNLVEKFD"
     gene            complement(6721..8016)
                     /locus_tag="ACHFOB_001248"
     CDS             complement(6721..8016)
                     /locus_tag="ACHFOB_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800039.1"
                     /translation="MRKSKFGTKEIKILGLSSLGGTLEFYDFIIFVFFAEYIANVFFP
                     KDMSEFWALLNTYGAFAAGYLARPLGGIVMAHFGDKFGRNNMFMLSILLMVLPTFVLA
                     FIPGYETLGFLAPVLLILIRIFQGIAIGGELPGAWVFVREHCQEKQKAFFLSCLNSAM
                     ALGILLGSIVFLIINAFFSIEEIAAYAWRIAFFVGGIFGIISIYLRRFLQETPVFKQM
                     KKESSLSSFPLRDLFKEKDIVKNLFSSMMMTWVLTGCVIVLVLLMPKFMPSILNLSGV
                     EGSYLQVLGILGIALGGAFMGYLVDKFGLFKICIFFSLTFVFFSFLYFYALYELKNLV
                     LVCILYSIVCFLGGINVFAPILMSEVFRAKIRFSGISFSYNIAYAISGGITPQLVFWL
                     NTLASKNENPFLYGMSIYMIFLALLAICAVFIVKDKIKF"
BASE COUNT         3000 a         1232 c         1243 g         2563 t
ORIGIN      
        1 ggagttttaa agtcttaatt ttaattgaat aaaattatta tttgtattat aatcgcaatt
       61 acttttgtca cataaatgca aggagataac atggaataaa atcgtagaga ttttttaaaa
      121 tggagttctt tgtttggcgg cttaacctta agtcctataa gtctaagtgc aaatttatta
      181 aaaactccac cattgatcag caaatgggct ggatgtaatg taaattgcgg aacaaaatgt
      241 cctgtaaaag tacatactca agatggaatt attaaatatg tcagtactga taatgaaggt
      301 gatgatagct ttgataatcg tcaagcaaga gcctgtatta gaggtagaag ctcaagatat
      361 aaagtttaca atgcaaatcg cttaaaaaga ccattaaaaa gagtgggaaa aagaggtgaa
      421 ggtaaattta tgcctatttc ttgggagcaa gcttttgatg aaatttctgc caaaatgcaa
      481 gaaattaaag aaaaatacgg caatgaagcc ttttatataa attatgcaac aggaacaaca
      541 ggaacaataa tcaatcgctg tacacaaggt ccatgggcta gacttttaag tctttatggt
      601 ggttatttaa attatcataa ttcttattct acggctcaaa tttcaaatgc tatgaatttt
      661 ttctatggtg gatctcctgc tagcgatata tacactttac gctctgcaaa attagctata
      721 ttttttggag caaatcatgt tgaaactaga atgggaggtg gtggagtagg ctatgcttat
      781 caaaaagcct tagaagaaag tggatgtaaa ataattcaca ttgacccaag atgcaatgat
      841 tctatgatag ggcattgcaa tgagtggata cctatagcac caggaaccga tgcagctttg
      901 attgctgcgc taacttatgt gatgataaaa gaagatttac ttgatagaac ttttcttgat
      961 aaatacacca taggctttag cgaaaatact ctgccacaag atgcagccaa aaactcaagc
     1021 tatgaaagct atgttttagg actaaacgat ggagtagaaa aaactcctga ttgggctagc
     1081 aagattacaa aaattccagc acgccgcata gttcaacttg caagagaaat tgccacgata
     1141 aagccttgtt ttatagaaca aggttgggga gtgcaaagac attcaaatgg agaacaaaat
     1201 gcaagggcga tagcaactct agcttgtatt acaggaaata ttggcataga agggacaaat
     1261 acaggatgtc gaacaggatc aagtaaaaca tatgatataa tgggtatgcc ttttaaaaat
     1321 ccaataaaag attctattcc ttgtttttta tttacagacg ctatttatcg cggaaaagaa
     1381 atgacagata ttagtgatgg ggtgcgtggc acaacacaat taaaacaaaa tatcaaattt
     1441 attttcaata cagcaggaaa ttgtcttaca aatcagcaca gcaccattaa agaagtgcat
     1501 gatattttaa gcgatgagaa tttgtgtgag tgtatagtag atgttaatgt aactagaact
     1561 ccgtcaaata actacgcaga ttatatctta cctgatgcaa ctatgctgga gcaagaagat
     1621 tttataagac ctagcgcagg atattatagc aataagcctt atattattta ttgtcaaaaa
     1681 gctatcgagc cagttggtga agcaaaacct atttatgaaa tgtgtcttga acttgctaaa
     1741 agacttggca tagaaaaaga atttagcgaa ggaagaacac aaaaagattg gctaaaatac
     1801 ctttatgaag aaagtatgaa aaaaaatcca cttttgccta gttttgaaga aatgtgcgaa
     1861 aaaggacttg taaaatttga gcctgtaaaa cctgtagtgg cattacaaag ttttataaaa
     1921 gatcctatca ataatccttt aaaaactccc agcggaaaga tagaaattta tagcacaaaa
     1981 ctcgcacaaa tgcaaaaaac ttggaaatta aaagaaggac aacaaatagt gcctattcct
     2041 gtttttgaaa gccaaagaga agggattttg gatccattaa aacaaaagta tccttcgcaa
     2101 ttttttggct atcactacaa aggtagaaca cattctagct tttgggaaat tccacaaatt
     2161 agagaagcta atccacaaga aatttggata aataccatag atgcagagca aagaagtatc
     2221 aaaacgggcg atgtggtgca agtaagaaat gacttaggaa tcatacaagg catagcaaaa
     2281 gttactccaa aaatcatacc aggttgtgca gtaaccccac aaggtgcatg ggcaaaatat
     2341 gaaaatggta tcgatgtggg aacttgtgtg aattctttgg caagtatagt accaactgct
     2401 atttctaaag gaaatggaca acattctatt ttagttgaaa ttgcaaaagt ttaaggagaa
     2461 aaagatgaaa ttagaagaaa attcacaatt tggttttatg ctagatcaaa gcaaatgcgt
     2521 aggctgtagg acttgctcac tttcttgcaa ggattataaa aacatgcctg tgggaattaa
     2581 ttttcgccgt gtgtttgaga ctgaaggggg aaattggaca gctaaagaag atgggagttt
     2641 tgagcaaagt gtttttgctt actacacttc tatttcttgc aatcattgtt ctaatccatc
     2701 ttgtcttaaa gcttgtccaa ctggcgcaac aatgaaaata aaatggggaa tagtagcaat
     2761 cgatgatagt atgtgtatag gctgcaaagc ttgtgctatg gcatgtcctt atggcgcacc
     2821 tcaatttaac catgaaagtg gtcatatgag caaatgcgat gggtgttatg agagattaaa
     2881 agaaggtaaa aatccaattt gcgtggactc ttgtcctttt agagcattaa aagcaggaga
     2941 tataacaaaa ctgagagaag aacatggaaa tttagcctct atcacacctt tacctgatgc
     3001 ttctatcacg catccaaatt tatgtatagt gcctgaaaaa catagtttac cttcaggtaa
     3061 taaaagtacg atttttcatc tacctcaaaa ctaccaagga gttaaaaatg acatcattta
     3121 atcacatttt aagtgaaatg cctttggtat tatttactat tttagtacaa gctgtaattg
     3181 gacttagttt ggtttatgca cctgcattta taaatggtta caaaaattat gcaaatttaa
     3241 agtcttttgg attagcctta ggaattgcaa tggtggttgc ttttatccct tcattttttc
     3301 atttaaatga tattacacac atttttaatg tattaaatag aatgggtgtt ttttatgcaa
     3361 acaatgaatg gcacataggc tggatgaata atgaaatttt atttgtatct cttgtgtgtg
     3421 ctttggactt tttgctttat ctaaaaactt caaattgggt gttttatctt acgctaatat
     3481 gtggaatttt aggacttttc tttatgagtg gagcttatgg ctccatgcaa gaaagtgtac
     3541 ctacttggga ttttaagatc actttgcttt atttttttgc tagtgctata tttttaggtg
     3601 ctattgttta ttattgtttt tttgaaaata gcaaacatga aagaaaaatg tcatttttta
     3661 caggacttat aggtataggg cttttaagca ctgctatagt tttacaaacc ctacatgtag
     3721 gacaaacttg gattatgggg cttgtaaacc cttttgaact tttaggtgga acctatgatt
     3781 ggtttatatc gctttctttt gcattcttag gacttgggat tgttacttgg tatttgcata
     3841 attatttaca tgaaaaattt aaaagtaaat tttttgcttg ttttgcccta ctttgtgcat
     3901 ttttaggggt gtttaccact agaatgctat tttatggact tataagtact caaatcatgt
     3961 tgggacattc ttaatgcaaa aattggcaat agatatattt atcaattttt tgcaaaatcc
     4021 acctaatcat tttttgctag aaaaacttaa aaaagaagaa ttctggcaaa attggttttt
     4081 aaaaaataat agcaaattac aatgcaccgc tttaaagctt ttatcatctt caaacgaaga
     4141 tgataaatta atagcaagtg attttacatc tttgttttta agtgatgttg attatgtaaa
     4201 agcaccgcct tttgcttctt tttatcttga tgaaaataaa gaaatttatt cagataattc
     4261 tgataaagtt aagcaaattt ttgcgcaaaa taactttttt tcttttttta atgaagaacc
     4321 tgcagatagc ttgataaatg aattattatt tattagtttt ttaatcaaaa aacaagatga
     4381 tataactttg caaaaattct taaaagaaga attttttatt tggtttaaca tgtggagttt
     4441 tgatgttatc aataaagcta aaacacattt ttataaagca ttaacaatgt taatgcaaga
     4501 ttttttcaat caactaaata caaaatttta acacaagtca atttttttct cctttttaag
     4561 atataaaata tctcttttac aacaaaaagg agaaattatg acaaaagaac aaattcaaat
     4621 catcaaagat tgtgtgccta ttttgcaaaa aaatggagag gatttaacca atgagtttta
     4681 taaaataatg tttaatgatt atcctgaggt aaaacctatg tttaatatgg aaaaacaaat
     4741 ttcaggagaa caaccaaaag ctttagcgat ggcgatttta atggcagcta aaaatataga
     4801 aaatttggaa aatatgagaa gctttgttga taaagttgcc ataactcatg ttaatttagg
     4861 ggttaaagaa gagcattatc ctatagttgg agcttgcctt ttaaaggcta ttaaaaatct
     4921 tttaaatcct gatgaagcca ctcttaaagc ttgggaagtt gcttatggaa aaattgctga
     4981 attttatatc gatatagaaa aaaagctcta tgataaataa tacaagccca ttttgggctt
     5041 taatcaaatt tttctactaa atttttagct aattccttta tattctcacc ctttaattcg
     5101 ctgatttcac cattttgagc caagaaaatt ctatcagcac tatcaaaata tgcatcatca
     5161 tgtgtgatag caaagattgt tttaccttgc tcttttaaca aaggtaaaag ttttttataa
     5221 aaaaatcttc taaaaacagg atcttgatca gccgcccatt catcaagcac taaaatatcc
     5281 ctttcttcaa gcaaggctat aagcatagct aaacgctttt tttgccctgt agaaagtttg
     5341 gttaaggtca gttcattatc tttgacactt gttttatctt taagttctaa aaactccaac
     5401 caaaaagcaa ttttttcttc gcttgcaaaa ttttctttat ttaaggtttt agtaaaaaga
     5461 tgaaaatcgc taaaaacagc agaaataaga gatctatact catctaaatt tttatcatct
     5521 ataagcgtat catcaacata aattccgcct ttgcttggct taaaaagtcc tgtcaaaagc
     5581 atacaaaaag tggatttacc acttccattt ttacctatta aaaataccaa ttcacctttt
     5641 ttaagttcta tatttacagg atttaagtga aaattttctt cataagcaaa ttgagtattt
     5701 ctaaaagaaa tttttttcca ttcactaata taatgtgttt ttttaaaacc ttctatataa
     5761 tcatctaatt ccaattttgc gatcttatcc aaagcgattt ttgccaaaag caaagtagga
     5821 aaagatccta tcatagatac taaaggggtt cgtaaaaaca aaatagaaag agctatagtt
     5881 gtagcatctg caacacttgc ccattcaaat tttaaagcta agtaaaactc tacacccact
     5941 aaagccaaaa gagttacatt tgtccagttg tttgagagat tgttaaaaag attgcctaaa
     6001 gtactatttt tctttttcaa tcttgcatta ttttcaaatt catcttcata gtaaagcttg
     6061 gctctatcac gattgatcaa aagttcttta tgtccatcta gtatattttg gtaattattt
     6121 tgcaaagcat cgtcattttc ccttgccttt cgaaaatact gatatacttt catcatcaaa
     6181 aaattattag taataaaaat aaccataatc cataccacac acaaagcaaa aatttgtggt
     6241 gaaagataac ataaataaac actagtgcat aaaatcaata tacttgattg taaaaaatca
     6301 ggcaatctta aaagcccaaa agatatattt ctcacatcac ttcccaaaga agctaaaatt
     6361 ctagccttac ctactttagc tactcttaat aaaggggtgt ctaagatctg ctttactacg
     6421 cgtctttgca ttttaaaaat aaaattttgt ccaaaaatac taagtccaag ttcaactatg
     6481 gtagaactta taaaaaatat caaaagcaaa acaataaaat aaaaaatagg aatgttttgt
     6541 gcatttttaa gcaaataatc attgataaaa acaagagtta aaactccaac agcacttgta
     6601 ataaaagaaa aaagcaaaaa agaaatcaac tttaatttat tttgcttaag taattcgata
     6661 ataaaaggca tttataaact ccaaaatata attttaatta taacatttta agagtgatta
     6721 tcaaaatttt attttatctt ttactataaa aacagcacaa atagccaata atgctaaaaa
     6781 aatcatatat atactcatac catataaaaa tggattttca tttttactcg caagtgtatt
     6841 aagccaaaaa acgagttgcg gagtaatacc gcctgaaatt gcataagcaa tattataaga
     6901 aaaagaaatt cctgaaaatc ttattttagc tctaaaaact tcactcatta aaataggtgc
     6961 aaacacatta atcccaccta aaaaacaaac aatcgaatac aaaatacaca ccaaaaccaa
     7021 atttttaagc tcgtataaag cataaaaata taaaaaagaa aaaaatacaa aagttaaaga
     7081 aaagaaaatg caaattttaa ataaaccaaa tttatctaca agataaccca taaaagcccc
     7141 gcctaaagct attcccaaaa ttcctaatac ctgtaaataa cttccttcaa ccccacttaa
     7201 atttaaaata ctaggcataa atttaggcat taataaaaca agcacaataa cacaacctgt
     7261 taaaacccaa gtcatcatca ttgatgaaaa taaatttttt acaatatcct tttctttaaa
     7321 taaatctcta agtggaaaag aactaagtga tgattctttt ttcatttgtt taaaaacagg
     7381 agtttcttgc aaaaatctac gcaaataaat agaaataatc ccaaaaattc cacctacaaa
     7441 aaaagcaata cgccatgcat aagcagcaat ttcttctata ctaaaaaaag cattaatgat
     7501 taaaaatact atacttccta acaaaattcc taaagccata gctgaattta aacagcttaa
     7561 aaagaaagct ttttgttttt cttgacaatg ttctcttaca aaaacccaag ctccaggcaa
     7621 ttctccacct atagctatgc cttgaaaaat tcttataagt atcaataaaa caggagctaa
     7681 aaacccaaga gtttcataac ctggaataaa agctaagaca aaggtaggaa gaaccattag
     7741 taaaatactt agcataaaca tattgttacg cccaaattta tctccaaaat gtgccataac
     7801 tataccacct aaaggacgtg ctaaatatcc agctgcaaat gctccataag tatttaataa
     7861 agcccaaaat tcactcatat ctttaggaaa aaatacatta gctatatatt cagcaaaaaa
     7921 gacaaaaata ataaaatcat aaaattctaa agttcctcct agtgaagaaa gtcctaagat
     7981 cttaatttcc tttgttccaa attttgattt tctcattgat taattacctt aaatttta
//
LOCUS       DAZBIH010000068         7987 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.069, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000068 DAZBIH010000000
VERSION     DAZBIH010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7987
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.069"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            27..437
                     /locus_tag="ACHFOB_001249"
     CDS             27..437
                     /locus_tag="ACHFOB_001249"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800040.1"
                     /translation="MEKSLLFHFRRIGVEFIIFSVYAVFSISWAATGSLMPLISNDLA
                     LNTQQATLITSMIVVAKIFGASFTAFLVYKFGLKKGYFLGCILMSSGIFLSFVDSYSG
                     ILVIRFLTGLGSACALVCLVPIAQQWFEKKLCIL"
     gene            425..1246
                     /locus_tag="ACHFOB_001250"
     CDS             425..1246
                     /locus_tag="ACHFOB_001250"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800041.1"
                     /translation="MHFVISFNITSNLVGITLGLILAESISNYFGNWRDSLSFYAWIN
                     LILLILWLFVGKDENKKEEKKNNAKDLIYALKSRVTWGMIIFYIGPILFLNSLFTFLP
                     TFYAQYAGFSKELADFAKKEIPALANFAIIFGPYLGLFFKRKNISFKIMLLSGGACIF
                     ICGFCMLFLQNLVLIQIFAVLSGIFYSMWFPFFFNLPSELKNSNPNQTAYIMSAFWSI
                     TFVILSFNLWVVSWSVDKTHSFTLGFVYIFALIFISAILAQFVLPRRENFIQGEK"
     gene            1248..2399
                     /locus_tag="ACHFOB_001251"
     CDS             1248..2399
                     /locus_tag="ACHFOB_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20 aminoacylase family protein"
                     /protein_id="HFN5800042.1"
                     /translation="MNLIPEILDLQGEFEKIRHQIHENPELGFDELYTAKLVAQKLKE
                     FGYEVYEEIGKTGVVGVLKKGNSNKKIGLRADMDALPLQECTNLPYKSKKENVMHACG
                     HDGHATSLLLAAKYLASQNFNGTLNLYFQPAEEGLGGAKAMIEDGLFEKFDSDYVFGW
                     HNMPFGSDKKFYLKKGAMMASSDSYSIEVIGRGGHGSAPEKAKDPIYAASLLVVALQS
                     IVSRNVDPQNSAVVSIGAFNAGHAFNIIPDIATIKMSVRALDNETRKLTEEKIYKICK
                     GIAQANDIEIKINKNVVAPVTMNNDEAVDFASEVAKELFGEKNCEFNHRPLMASEDFG
                     FFCEMKKCAYAFLENENDIYLHNSSYVFNDKLLARAASYYAKLVLKYLK"
     gene            complement(2403..3143)
                     /locus_tag="ACHFOB_001252"
     CDS             complement(2403..3143)
                     /locus_tag="ACHFOB_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaA family protein"
                     /protein_id="HFN5800043.1"
                     /translation="MKILFSPSESKNENCVKNPINENSFIFKELFPYRIKALKHYEEF
                     IKNASLQNLQELFGIKNENEIDKFKHDLKQAPTQEAILLYTGVSYEYLNFKALDKKSQ
                     AYILENTLIFSNLFGVVRANDTLPFYKFKQGAKIGNFAIEKFYKEHFSKALDAYLENE
                     EILDLRAGFYDKFYTPKKKFYTYKFVKNGKVISRFAKAYRGILLSISAKNQVKNNKEL
                     LANLPSNLKLKEIQIKGLKEEIVLEILD"
     gene            complement(3235..4353)
                     /gene="jlpA"
                     /locus_tag="ACHFOB_001253"
     CDS             complement(3235..4353)
                     /gene="jlpA"
                     /locus_tag="ACHFOB_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_254520897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoprotein adhesin JlpA"
                     /protein_id="HFN5800044.1"
                     /translation="MKKGIFLSIGIAVLFSACGNSIDEKTVKKYENQLNQTVKQEIAS
                     LSQDSGIKIEFSDFKCNADGDFIACLSPNFKTLAKDNNDEYQELFQAKNIKIRSNEIY
                     KGETNTSISIKEYYNDLFKNQKSIQSNLVFEDFKLGEKVVSDINASLFQQDPKISSFI
                     NKLSSDSYTLSFDNSINKQENNYLDNLDIKFYNAKLNFNTNLNINLKEDLLNYLDSKG
                     IKFNTQTLAMDEQAINELLNMVNYEQASDFSNTIQKYIILNNFKIDSTLKTEGVFSSY
                     IATAKENLQTLKAQSQNEEQALIFDKALAILNNITQNDDYKLNLDLKFKNIPVSDYST
                     QGIDSIEKLSINNQDATEALKIILPFIMFSMLMGGASF"
     gene            4573..5412
                     /locus_tag="ACHFOB_001254"
     CDS             4573..5412
                     /locus_tag="ACHFOB_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN5800045.1"
                     /translation="MKKILLSVLTTFVAVVLAACGGNSDSKTLNSLDKIKQNGVVRIG
                     VFGDKPPFGYVDEKGNNQGYDIALAKRIAKELFGDENKVQFVLVEAANRVEFLKSNKV
                     DIILANFTQTPERAEQVDFCLPYMKVALGVAVPKDSNITSVEDLKDKTLLLNKGTTAD
                     AYFTQDYPNIKTLKYDQNTETFAALMDKRGDALSHDNTLLFAWVKDHPDFKMGIKELG
                     NKDVIAPAVKKGDKELKEFIDNLIIKLGQEQFFHKAYDETLKAHFGDDVKADDVVIEG
                     GKI"
     gene            5452..6699
                     /locus_tag="ACHFOB_001255"
     CDS             5452..6699
                     /locus_tag="ACHFOB_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800046.1"
                     /translation="MQKKYKNIIYASLGGILEFYDFVLFAFFLDIFAKVFFPQNDAFW
                     MQINAYIAFGAAYLARPFGSIVMAHFADRYGRKNIFYISMLLMVLPSFALAFLPSYES
                     IGIFATLILFTIRILQGLAVGTEVSGAWIYVSEFVKGRQIPLALGFISATLTIGLLLG
                     NIATLGIRSYFTPEEVQSYAWRIPFIIGGFFGILALFLRNKLSETPEFIKVQNEKKIL
                     NFPLFEALKTHKMSMLVCFLMTMVLTSGVATLMILPKYFESLLAMSKTSALWVQNFAI
                     LAVIFGALFQGFLASKWGSYKICSIFSIAFIIFGMFFSFYDENFLFYFLLACFAQGII
                     TFAPVFMTQIFKSELKFSGLSFAYNISYAILGFLTPFIVNAFYKEYLGIYLAIVGFCS
                     LLCVFLLKRVFARSKIKELSIVF"
     gene            complement(6682..7950)
                     /locus_tag="ACHFOB_001256"
     CDS             complement(6682..7950)
                     /locus_tag="ACHFOB_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HFN5800047.1"
                     /translation="MQNVIENFKQLCKIPHCSYETEQMKEFLSSYAKDKGFKVSVDKA
                     GNIHAIKGKPKICLQSHYDMVCMGDAPNLEVYEENGFLRAKNSSLGADNGIGIAIMMS
                     AMAEFENLECLFTNDEEVGLMGVNSLEHTLESKMLLNLDHESDDEIMIGCAGGVDIEA
                     SLSFNTLRKKGKIYELCAQNFKGGHSGINIIRNEKSSIKEMAKFIQENEGEIISFEGG
                     ERINSIPKHAKALVHFKNEVKSNNWIKCEFKEEGEFEICDQSKKLLSLINSFTHGVRA
                     YDENLGMVQTSINLATLRMENQQIKFALFARSNILDGLKQVEFETLEFFKAFDFKVRS
                     FNFYPPWEGKPNTLSDMVFKALKKVSPNAKVSAIHAGLECGIIEKKQELLCASIGPNI
                     HNPHSTDEHCEIASVEKISKVVFEVLKDNA"
BASE COUNT         2459 a         1039 c         1356 g         3133 t
ORIGIN      
        1 aataaatatc taaaaaggat tttaatatgg aaaaatcact tttatttcat tttagacgca
       61 ttggagttga atttataatt tttagtgttt atgctgtttt tagtatctct tgggcagcga
      121 cagggtcttt aatgcctttg atttcaaatg atcttgccct aaatactcag caagctactt
      181 taatcactag catgatagta gttgcgaaaa tttttggtgc ttcatttact gcttttttgg
      241 tttataaatt cggattaaaa aagggatatt ttttaggctg tattttaatg agttcgggta
      301 tctttttaag ttttgtagat agttatagtg gtattttggt tataagattt ttaacagggc
      361 ttggttcagc ttgtgcttta gtttgcttag tgcctattgc acagcaatgg tttgaaaaaa
      421 agctttgcat tttgtaatta gttttaatat aacttcaaat ttagtaggca ttactctagg
      481 acttatttta gctgaaagta tctcaaatta ttttggaaat tggagagatt ctttatcatt
      541 ttatgcttgg attaatttga ttttattgat tttgtggctt tttgtaggta aagatgagaa
      601 taaaaaagaa gaaaaaaaga ataatgcaaa agatcttatt tatgctctaa aatctcgtgt
      661 tacttggggt atgattattt tttacatagg gcctatttta tttttaaatt ctctttttac
      721 ttttttacca actttttatg cgcaatatgc aggttttagt aaagaattag ctgattttgc
      781 taaaaaagaa attccagcct tggctaattt tgctattatt tttggtcctt atcttggatt
      841 attttttaaa agaaaaaata tttcttttaa aataatgcta ttgtctggag gagcgtgtat
      901 ttttatatgc ggattttgca tgttgttttt acaaaattta gtattgatac agatttttgc
      961 tgtgttatca ggcatttttt attctatgtg gtttccattt ttctttaatc taccttcaga
     1021 actaaaaaat tccaatccaa atcaaactgc ttatattatg agtgcttttt ggagtattac
     1081 ctttgttata ctatcattta acctatgggt agtatcttgg agtgttgata aaacccatag
     1141 ttttactttg ggttttgttt atatttttgc tttgattttt atttcagcga tcttagcaca
     1201 atttgttttg cctagaagag aaaattttat acaaggagaa aaatagaatg aatttaattc
     1261 cagaaatact agacttacaa ggcgaatttg aaaaaattcg tcatcaaatt catgaaaatc
     1321 ctgagcttgg ttttgatgaa ttatatactg caaaattagt ggcacaaaaa ttaaaagaat
     1381 ttggttatga ggtttatgaa gaaataggaa aaacaggcgt tgtgggggtt ttaaaaaagg
     1441 gaaatagcaa taaaaaaata ggacttcgtg cagatatgga tgctttgcct ttgcaagaat
     1501 gcacaaattt gccttataaa agcaaaaaag aaaatgtaat gcatgcttgc ggtcatgatg
     1561 gacatgctac ttctttattg cttgctgcaa agtatttagc aagtcagaat tttaatggta
     1621 ctctaaatct ttattttcaa cctgctgaag agggtttggg tggcgctaag gcgatgatag
     1681 aagatggatt gtttgaaaaa tttgatagtg attatgtttt tggatggcat aatatgcctt
     1741 ttggtagtga taagaaattt tatcttaaaa aaggtgcgat gatggcttct tcggatagtt
     1801 atagcattga agttattgga agaggtggtc atggaagtgc tccagaaaaa gcaaaagatc
     1861 ctatttatgc tgcttctttg cttgtggtgg ctttgcaaag tatagtatct cgcaatgttg
     1921 atcctcaaaa ttcagcagtt gtaagcatag gagcttttaa tgcaggacat gcttttaata
     1981 tcattccaga tattgcaacg attaaaatga gtgttagagc attagataat gaaactagaa
     2041 agctaactga agaaaaaatt tataaaattt gtaaaggtat tgcacaggct aatgatatag
     2101 agattaaaat caataaaaat gttgttgcac cagtgactat gaataacgat gaagctgtgg
     2161 attttgctag tgaggttgca aaagaattat ttggcgaaaa aaattgtgaa tttaatcatc
     2221 gtcctttaat ggcaagtgag gattttggat ttttttgcga aatgaaaaaa tgtgcctatg
     2281 cttttttaga aaatgaaaac gacatttatt tacataattc tagttatgtt tttaatgata
     2341 agcttttagc tagggctgca agttattatg cgaagctagt tttaaaatac ttaaaataaa
     2401 aactaatcta gaatttcaag cacaatttct tcctttaaac ctttgatttg aatttctttg
     2461 agttttaggt ttgaaggaag gtttgctaaa agctctttat tgttttttac ttggtttttt
     2521 gcacttatgg agagtaaaat tcccctataa gctttagcaa aacgactgat gactttacca
     2581 ttttttacaa atttataagt ataaaatttc ttttttgggg tgtagaattt atcataaaat
     2641 cctgctctaa ggtcaagtat ttcctcattt tctaagtatg catctaaggc tttactaaaa
     2701 tgttctttat aaaatttctc tatggcaaaa tttcctattt tagccccttg cttgaattta
     2761 taaaagggta gggtatcatt agctcttaca acgccaaaaa gattagaaaa tataagagta
     2821 ttttctaaaa tataagcttg gcttttttta tctaaggctt taaaattaag atattcataa
     2881 cttaccccag tgtaaagcaa tatagcttct tgagtgggag cttgttttaa gtcgtgttta
     2941 aatttatcaa tttcattttc atttttaatg ccaaaaagtt cttgtaaatt ctgtaaactt
     3001 gcgtttttga taaattcttc ataatgcttt aaagctttta ttctataagg aaataattct
     3061 ttaaatataa atgagttttc attgatagga ttttttacgc aattttcatt tttgctttca
     3121 ctaggggaga ataaaatttt cattttagcc ttttttgtta atattatgaa aacattaaga
     3181 gcaaagaatt taatcttgct tttaatgttt ttgaagtttt tatcatttta aaatttaaaa
     3241 tgacgctccg cccattaaca tagaaaacat gataaatgga agtataattt ttaacgcttc
     3301 tgtggcgtct tgattgttga tgcttagttt ttctatgctg tcgattccct gtgtgctata
     3361 gtcactaaca gggatgtttt taaattttaa atcaagattg agtttataat catcattttg
     3421 agtgatattg tttaaaatag ctaaagcttt atcaaagatt aatgcttgtt cttcattttg
     3481 actttgagct tttaaggttt gtaaattttc cttagcagtt gctatatagc tactaaatac
     3541 gccttcggtt ttaagagttg aatcaatttt aaaattattt aagatgatgt atttttggat
     3601 tgtattgcta aaatctgaag cttgttcgta gtttaccata ttaagaagtt cattgatagc
     3661 ttgttcatcc atagctaaag tttgagtgtt aaattttata cccttagaat caaggtaatt
     3721 aagtaaatct tcttttagat ttatatttag atttgtattg aaatttaatt ttgcgttata
     3781 aaattttata tcaagattat ctagataatt gttttcttgt ttgtttatgg agttatcaaa
     3841 tgataaagta taagaatccg agcttaattt attgataaaa gagctgattt ttggatcttg
     3901 ttgaaataag cttgcattga tgtcactaac aactttttct ccaagtttaa aatcttcaaa
     3961 aaccaaattt gattgtatgc ttttttggtt tttaaaaaga tcgttgtaat attctttaat
     4021 gctaattgat gtatttgttt cgcctttgta aatttcattt gagcgaattt tgatattttt
     4081 tgcttgaaat agttcttgat actcatcgtt attatctttt gcaagagttt tgaaatttgg
     4141 acttaaacac gctataaaat caccatctgc attgcattta aaatctgaga attcaatctt
     4201 tattccagaa tcctgagaaa ggcttgcaat ttcttgttta actgtttgat ttagttgatt
     4261 ttcatatttt ttaactgttt tttcatctat ggaatttccg caagctgaaa acaaaacagc
     4321 tattccaata gagagaaaaa tacctttttt catagttttc tccttaaaaa tttaaaaaaa
     4381 agattatatc tttttttact taaaatttaa acaatgctaa aagagagtgt gagattaatt
     4441 acatttttac acataggaaa atctttttag tttgtttcaa atgcattatt tataatttta
     4501 agtataatta actttgcaat tattatatat ttttgcaata gctttaagct tatttttaaa
     4561 gaaaggaaat gtatgaaaaa aatacttcta agtgttttaa cgacctttgt tgcagtagta
     4621 ttggctgctt gtggaggaaa ttctgactct aaaactttaa attctcttga taagatcaag
     4681 caaaatggag ttgttaggat tggggtattt ggcgataaac caccttttgg ttatgtggat
     4741 gaaaaaggaa acaatcaagg ctatgatata gctttagcta aacgcatagc aaaagaactt
     4801 tttggcgatg aaaataaggt gcaatttgtt cttgttgaag ctgcaaatag ggttgagttt
     4861 ttaaaatcaa ataaagtaga tattattttg gctaatttta ctcaaactcc agaaagagcc
     4921 gagcaggttg atttttgctt gccttatatg aaggtagctt taggcgtagc tgtaccaaag
     4981 gatagtaata taactagcgt agaagattta aaagataaaa ccttgctttt aaacaaaggc
     5041 acaacagcag atgcttattt tacgcaagat tatcctaata ttaaaacttt aaaatatgat
     5101 caaaataccg aaacctttgc cgctttgatg gataaaagag gcgatgcttt aagtcatgat
     5161 aataccttac tttttgcttg ggtgaaagat catcctgatt ttaaaatggg tatcaaagag
     5221 ttaggtaaca aagatgttat cgcaccagcg gttaaaaaag gcgataaaga acttaaagaa
     5281 tttatcgata atttgatcat caaactaggc caagagcagt tttttcacaa ggcttatgat
     5341 gaaactttaa aagctcattt tggagatgat gttaaggctg atgatgtagt gattgaaggt
     5401 ggaaaaattt aataaagggc tttttgccct ttagttgatt taggataaaa tatgcaaaaa
     5461 aaatacaaaa atattattta tgcttctttg ggtggaattt tagaatttta tgattttgtg
     5521 ctttttgcct tttttttgga tatttttgct aaggtattct ttccgcaaaa tgatgctttt
     5581 tggatgcaga taaatgctta tatagccttt ggtgctgctt atttagcgcg tccttttggt
     5641 tctattgtga tggcacattt tgctgataga tatggaagaa agaatatttt ttatatttct
     5701 atgcttttga tggttttgcc tagttttgct ttagcttttt taccaagtta tgaaagtata
     5761 ggtatatttg ctactttgat tttatttact attcgtattt tgcaaggttt agccgttgga
     5821 actgaggtga gcggagcttg gatttatgtg agcgaatttg tcaaagggcg tcaaattcct
     5881 ttagctcttg gttttatttc agcgacttta accataggtt tattgctagg aaatattgcc
     5941 actttaggca taagatctta ttttacccca gaagaagttc aaagctatgc ttggagaatt
     6001 ccttttatca taggaggatt ttttggaatt ttagctttgt ttttaagaaa taaactcagc
     6061 gaaactccag aatttataaa agttcaaaat gaaaagaaaa ttttaaattt tccattgttt
     6121 gaagctttaa aaactcataa aatgagtatg cttgtttgtt ttttaatgac catggtttta
     6181 acaagcggtg tggcaacttt gatgattttg cctaagtatt ttgaaagtct tttagctatg
     6241 agtaaaactt ctgctttatg ggtgcaaaat tttgctattt tagcggtgat ttttggagct
     6301 ttatttcaag gttttttagc aagcaaatgg ggaagctata aaatttgctc tatttttagt
     6361 atagctttta ttatctttgg tatgtttttt agtttttatg atgagaattt tttattttat
     6421 tttttactgg cttgttttgc acaaggtatt attactttcg cgcctgtttt tatgacgcaa
     6481 atttttaaaa gcgaacttaa atttagtggg cttagttttg cttataatat ttcttatgcg
     6541 attttaggct ttttaacccc ttttatagtt aatgcttttt ataaagagta tttaggtatt
     6601 tatcttgcta tagtgggatt ttgctccttg ctttgtgtgt ttttgttaaa acgcgttttt
     6661 gcaagaagca agattaaaga attaagcatt gtcttttaaa acttcaaaaa caaccttaga
     6721 tattttttca actgaagcga tttcacaatg ctcatcagtt gaatgaggat tatggatatt
     6781 tgggcctata gaagcacata aaagctcttg ttttttctct ataataccac actcaagtcc
     6841 tgcatggata gctgaaactt tggcattagg cgatactttt ttaagtgctt taaaaaccat
     6901 gtcgctaagt gtgtttggtt tgccttccca aggcggatag aaattaaaac ttcttacttt
     6961 aaaatcaaaa gctttgaaaa attctaaagt ttcaaattct acttgcttaa gcccatcaag
     7021 tatattagat cttgcaaaaa gtgcaaattt gatttgttgg ttttccattc ttaaagtagc
     7081 taggttaata cttgtttgaa ccatgcctag attttcatca taagctctaa ctccatgagt
     7141 gaaagaattt ataagactta aaagtttttt gctttgatcg caaatttcaa attcgccttc
     7201 ttctttaaat tcgcatttta tccagttgtt gctttttact tcatttttaa aatgcactaa
     7261 agctttggcg tgtttaggta tagaattgat tctttctcca ccttcaaaag aaatgatttc
     7321 tccttcattt tcttgtatga atttagccat ttctttgatg gaactttttt cgttgcgtat
     7381 gatatttatg cctgagtgtc cacctttaaa attttgtgca caaagctcat aaattttacc
     7441 tttttttcta agggtattaa aagacaaact tgcttctata tctactccac ctgcacagcc
     7501 tatcatgatc tcatcatcgc tttcatgatc taaatttaaa agcattttag attctaaagt
     7561 gtgctcgagt gaattcactc ccatgagtcc tacttcttca tcgtttgtaa aaagacactc
     7621 taaattttca aattcagcca tagcgctcat catgatggct atacctatac cattatctgc
     7681 gccaagactt gaatttttgg ctcttaaaaa gccattttct tcataaactt ctaagtttgg
     7741 tgcatcaccc atgcagacca tatcataatg gctttgtaga caaatttttg gtttgccttt
     7801 tatggcatga atatttcctg ctttatctac actcacttta aagcctttat ctttagcata
     7861 agagcttaaa aattctttca tttgttctgt ttcataactg caatgaggaa ttttgcataa
     7921 ttgtttaaaa ttttctataa cattttgcat tttatctcct ttgttttgat aaaattatgg
     7981 catattt
//
LOCUS       DAZBIH010000069         7818 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.070, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000069 DAZBIH010000000
VERSION     DAZBIH010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7818)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7818)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7818
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.070"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            134..856
                     /locus_tag="ACHFOB_001257"
     CDS             134..856
                     /locus_tag="ACHFOB_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800048.1"
                     /translation="MKKYFNIFKIFTNKTNAKFGLGVCSVVLSSSVCFAAVQATSKDG
                     KIFYISEHSFKDNQVYDPQAEIFKKINGKNFYASKSKYPISNLTMIYNNPKSGNKNLS
                     KLEILTPDTSKEEIITAFSTLGTVSSDTQAVPSSFIPFIVTAYAQNTNATNNKLILEN
                     GELSSVYFCKPSIGDCGVPNNSQKGDRFKYLITAAFTDRRGGGFNNQTILKENSYINN
                     GCRKYLHLALKWSSLYFRICSF"
     gene            786..2714
                     /locus_tag="ACHFOB_001258"
     CDS             786..2714
                     /locus_tag="ACHFOB_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800049.1"
                     /translation="MGVENIYTLPLNGAPYISGSVAFDGEAKDNKLILESNTKIDLHN
                     FQYFSDEEGKDIYDERITRLMGAFGINSNLQNNKVLIDSANIVLHGPDGEYTARSTFE
                     ILGALADVNNLKKYNVSKNSVIIKNLNLDLMVNSQNKITFYDAVLFGEIYGGRTLQGN
                     AEKNSIEVYHFNSLDHLDKNIKTHASLNLYGGYSNDGEANGNKIVFRLKKPLKISDNF
                     YGKNYYNLYGGFATEGANFNIIDIQNDLTYEKVPQNYSDKFTVYAARTLSGKANNNTL
                     SIKDSVISLPLYAFITSETTLDGIDYIADESNNNEVNFENIKSSKNLSLMINAKNVSN
                     NKINYNLIQSLTEASSLGKGSKIILKATQNANNNLIKLKDCSSAAVESSCIIKADKES
                     AFNKIIINNTVFSTASDKRQGYVGLIAGVSANSHDNIMELVNLNIDEYKNQDAIFLAP
                     SGTSDISNFKSYNNTLYLGGELNFFKDVNIDLLSGSVFHEVNKKGKIITQILPHQEDF
                     SKNNRLIIDTQDVKSEVVNNFENFTFILPNKIKNPILTIEKLINLPSNGSMEILTKNK
                     PTKGKYILIQSDVGIYDGVNRLLNQQELENLLEKMKNNKNKFNYNKIEKLAKSTLKNV
                     NFSFEVSDDAKIIYINIL"
     gene            2726..3160
                     /locus_tag="ACHFOB_001259"
     CDS             2726..3160
                     /locus_tag="ACHFOB_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFN5800050.1"
                     /translation="MKKMSKHIVLSFAVSSLLFSQAYALPQGGKFTHGTSGTIHTSGN
                     TVTITGKGQNHVIQWGGGFNIAQGESVNFTTSGKNYLNIAYQKDASKINGALNGGNNN
                     IFLVNPMGVLIGKTGTITAGKFVASTTPLNDENVKTFFKARS"
     gene            3129..4574
                     /locus_tag="ACHFOB_001260"
     CDS             3129..4574
                     /locus_tag="ACHFOB_001260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800051.1"
                     /translation="MLKLFLKQGASFSPAFDVSKQGNIINLGKINADNIVLIGNKVEI
                     GVGAELAGQDGQTNAKTAHLIGNYVYVSVGKDKENKNTIKIDKDGFKGTAIVEGFMQR
                     DMTSFANDKYQFGDFGSIKSQSYDGKNSVDFYRAITIGGHYYNNGQNINHYMNANEWK
                     LFADGWNSDALNGDIFKDGLTTIRLMSDIDFSYLTSNGKQIAIDPVGANKYAFSGNFD
                     GGNYTLKNILINAQNTDKGWNTGIFGKVEGKDSNKKAKIYNLNVDGLKFSGKTNSGGA
                     FVGQSSNADFSNIHLKNIGDLIFFDPNSKNGTDGFLYGGGFVGYAQSGSSFNRISLDN
                     FSKIALQPEGKFSSAYIDIYLGGFAGYSEGSNFSNILLNNIGGVTILGSETGGNIFAG
                     GFVGYAGDKSYFSQIDLKNIGSVQADGKTFVKHAGAGGFAGAINGTNSFEKISLINFG
                     DIIAKRGYVWTPDGIASDKLLMLDLVDLLEF"
     gene            4640..4765
                     /locus_tag="ACHFOB_001261"
     CDS             4640..4765
                     /locus_tag="ACHFOB_001261"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800052.1"
                     /translation="MQIYAKAGDGVGGWFGNDYNNYEFNAAGGFLGGFLILELEM"
     gene            5074..5996
                     /locus_tag="ACHFOB_001262"
                     /pseudo
     CDS             5074..5996
                     /locus_tag="ACHFOB_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856939.1"
                     /note="frameshifted; internal stop; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            6471..6608
                     /locus_tag="ACHFOB_001263"
     CDS             6471..6608
                     /locus_tag="ACHFOB_001263"
                     /inference="COORDINATES: protein motif:HMM:NF020068.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800053.1"
                     /translation="MTNIIVYYCQLSGHPSATAYIPPQDLSSNKVQINIVFGTFRKSN
                     Y"
     gene            6580..7389
                     /locus_tag="ACHFOB_001264"
     CDS             6580..7389
                     /locus_tag="ACHFOB_001264"
                     /inference="COORDINATES: protein motif:HMM:NF015803.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
                     /protein_id="HFN5800054.1"
                     /translation="MELLGKVIIKNNSGVRDYALESKLNKNLKGKVITTKNVENEIYK
                     INEIYGIQTNANLQSGDGCGESDVIIEVNKGDSATLTLYSNNYGAKETGRFRAGMSQS
                     LNNIARQGDNLNFYLQDSDENQIDYGINYSTFIGNLKITPFATQGHYVLGGIYRNLGF
                     YGDSMNVGVNFSYPVFLYTEYSLYLVSGFTHKKIKDYYLDGLVSNEKASNSVNLGIEG
                     TYKGLENNVLSYTLNFTYGNVENDGDSSGFNGVNLGNFGKMNLNLSNKYQF"
     gene            7465..7797
                     /locus_tag="ACHFOB_001265"
     CDS             7465..7797
                     /locus_tag="ACHFOB_001265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800055.1"
                     /translation="MSLGGPYGVRAYLEGEGSADNVVSGTLGIRFQTPLEGLYLTPFY
                     DIGYSWYENKEYQSKNHYFMDAMGMQILYTRSANFYVKMDAARAVHRFKHDGEHRARV
                     YVSLGKYF"
BASE COUNT         2953 a          920 c         1421 g         2524 t
ORIGIN      
        1 ttaaatttaa atattgaaaa ataaaatatc aaattaatat tttattttat aatcaactca
       61 ggacatacgg gatagtgttg caaataatca atttgcgata aatcaaaagg attttatttt
      121 agtgagaaat gagatgaaaa aatattttaa tatttttaaa atttttacaa ataagacaaa
      181 tgcaaaattt ggattgggcg tttgtagtgt ggttttatct tcttcggttt gttttgcggc
      241 ggttcaggct acaagcaagg atggaaaaat tttttatatt tctgaacatt cttttaagga
      301 taatcaagtt tatgatcctc aagcagaaat ttttaaaaaa attaatggaa aaaatttcta
      361 tgcttctaag tcaaaatacc ctatatcaaa tttaactatg atttataata accctaaatc
      421 tggaaataaa aatttatcta agcttgaaat tttaactccg gatacttcaa aagaagagat
      481 cataacagct tttagcactt taggaaccgt atcttcagat actcaagccg ttcctagttc
      541 ttttatacct tttattgtaa cagcttatgc tcaaaataca aatgcaacaa ataataaact
      601 tatattagaa aatggagaat tatcttctgt gtatttttgc aaaccaagca taggggattg
      661 tggagtacct aataattctc aaaaaggcga tcgttttaag tatttaatta ctgcggcgtt
      721 tactgacagg cggggggggg gatttaacaa tcaaaccatt ttaaaagaaa actcctatat
      781 caataatggg tgtagaaaat atctacacct tgcccttaaa tggagctcct tatatttcag
      841 gatctgtagc ttttgatggt gaagctaaag acaataaatt aatcttagag tcaaatacaa
      901 aaattgacct tcataatttc cagtattttt cagatgaaga aggtaaggat atttatgatg
      961 aaagaattac tcgtttaatg ggagcttttg gcataaattc taatttacaa aacaataaag
     1021 ttcttatcga ttcagccaat atcgtccttc atgggccaga tggtgagtat acagctcgtt
     1081 cgacctttga aattttaggt gctttagctg atgtaaataa tcttaaaaaa tacaatgtaa
     1141 gtaaaaattc cgtaataatt aaaaatttaa atttagattt aatggtaaat tcgcaaaata
     1201 aaataacttt ttatgatgct gttttatttg gagaaattta cggtggaaga acattacagg
     1261 gtaatgcaga gaaaaattct atagaagttt atcattttaa ctcattagat catcttgata
     1321 aaaacattaa aacacatgca tcgttaaacc tctatggtgg gtattctaac gatggtgaag
     1381 ctaatggaaa taaaattgta tttcgtctta aaaaaccttt aaaaatcagt gataattttt
     1441 atggaaaaaa ttattacaat ctttacggag gttttgctac ggagggtgcg aattttaata
     1501 ttattgatat acaaaatgat ttaacctatg aaaaagttcc acaaaattat tctgataaat
     1561 ttactgtata tgcagctaga actttaagtg gaaaagcaaa taataatacc ttaagtataa
     1621 aagattctgt tatttcattg cctttatatg cttttattac aagtgaaact acgctagatg
     1681 gtatagacta tatcgctgat gaatcaaaca ataatgaagt aaattttgaa aatattaaat
     1741 catctaaaaa tttaagtttg atgatcaatg ctaaaaatgt ttcaaataat aaaataaatt
     1801 ataatctcat tcagagttta accgaagcga gttctttagg aaagggctca aaaattattt
     1861 taaaagcaac tcaaaatgca aacaacaatc ttataaagct taaagattgt tcttcggctg
     1921 ccgtggaaag ttcgtgcatc ataaaagcag ataaagaaag tgcttttaat aaaatcatca
     1981 tcaacaacac agtttttagt actgcctcag ataaaagaca aggttatgtg gggttgatag
     2041 ctggagtgtc tgcaaattct catgataata tcatggagct tgttaattta aatatagatg
     2101 agtataaaaa tcaagatgct atatttttag ctccatctgg aacttcggat atttcaaatt
     2161 ttaaatctta taacaatact ttatatttag gtggagagtt aaatttcttt aaagatgtaa
     2221 atatcgattt gctttctggt tctgtttttc atgaagtaaa taaaaaaggc aaaataatca
     2281 ctcaaattct accgcatcaa gaagattttt ctaaaaacaa tcgtttgatt atagatactc
     2341 aagatgtcaa atcagaagtg gtaaataact ttgaaaattt tacttttatt ttgccaaata
     2401 aaataaaaaa tcctatctta actatagaaa aacttatcaa tcttccttca aatggaagta
     2461 tggaaattct tactaaaaat aaaccaacaa aaggaaaata tattctcata caaagtgatg
     2521 ttggaattta cgatggtgtc aatagattgt taaatcaaca agaattagaa aatttgttag
     2581 aaaaaatgaa aaataataaa aataaattta attacaacaa gatagaaaag ttggctaaaa
     2641 gtacattgaa aaatgtaaat tttagctttg aagtttcaga tgatgcaaaa ataatttata
     2701 tcaacatact ttaaaggaga gtaacatgaa aaagatgagt aaacatatag ttttatcatt
     2761 tgcggtgagt tctttactct tttctcaagc ttatgcttta ccacaaggag gtaaatttac
     2821 tcatggtaca agtgggacta tccatacctc tggaaatact gtaacgatta caggaaaagg
     2881 acaaaatcat gttatccaat ggggtggtgg ttttaatata gctcagggag aaagtgtaaa
     2941 ttttacaact tctggtaaaa actacctaaa cattgcttat caaaaagatg cttctaagat
     3001 aaacggagct ttaaatggcg ggaataacaa tatcttttta gttaatccca tgggagtttt
     3061 gattggcaaa acaggaacta tcactgcggg aaaatttgta gctagcacga cacctttaaa
     3121 tgatgagaat gttaaaactt tttttaaagc aaggagctag tttttctcca gcatttgatg
     3181 taagcaagca aggaaatatt atcaatcttg gaaagattaa tgcagataat attgttttaa
     3241 taggaaataa ggttgaaata ggagtaggag cggagctagc ggggcaagat gggcaaacta
     3301 atgctaaaac agcccattta ataggaaatt atgtttatgt tagtgtagga aaagataaag
     3361 agaataaaaa tactattaaa attgataaag atggcttcaa aggcacggct attgttgagg
     3421 gatttatgca aagggatatg acaagttttg caaatgataa atatcaattt ggagattttg
     3481 gtagcataaa gtcacaatca tatgatggta agaatagtgt tgatttttat agagctatta
     3541 ctataggagg gcattactat aacaacggac aaaatataaa tcattatatg aatgctaatg
     3601 aatggaagct ttttgccgat ggttggaata gcgatgcact caatggagat atttttaaag
     3661 acggtttaac cacaattcgc cttatgagcg atattgattt ttcatattta actagcaatg
     3721 gaaagcaaat agctattgat cctgttggcg ccaataaata tgcttttagc ggtaattttg
     3781 atggtggaaa ttatacttta aaaaatatac ttatcaatgc tcaaaacaca gacaaaggat
     3841 ggaatactgg tatttttggt aaagttgaag gaaaagatag taataagaag gctaaaattt
     3901 ataatcttaa tgtcgatggt ttgaaattta gtggaaaaac aaattctgga ggagcttttg
     3961 ttgggcaaag ctctaacgca gattttagca atattcattt aaaaaatatt ggagatttaa
     4021 ttttctttga cccaaattcc aaaaatggaa ccgatggatt tctttatggt ggtggttttg
     4081 taggttatgc tcaaagtggt tctagtttta atcgtattag tttagataat ttttctaaaa
     4141 tcgcactaca gccagagggt aaatttagca gtgcgtatat tgatatttac ttaggtggtt
     4201 ttgctggcta ttcagaaggt agtaattttt ctaatatttt attaaacaat attggcggag
     4261 taacgatttt aggttcagaa acaggtggca atatttttgc aggtggtttt gtaggttatg
     4321 ctggagataa atcatatttt tctcaaattg atttaaaaaa tataggtagt gttcaagcag
     4381 atggtaaaac ttttgtcaag catgctggcg caggaggttt tgctggagct ataaatggaa
     4441 ctaattcttt tgaaaaaatt tctttaataa attttggaga tattattgcg aaaagaggat
     4501 atgtttggac tcctgatgga attgcttcag ataagctttt aatgttggat ctggtggatt
     4561 tattggaatt ttaaatcctc tgaataaaga tatactttat gttagcttta aaaatatttt
     4621 aattaatttt gatcaaaaaa tgcaaattta tgctaaagct ggagatggtg tcggtggctg
     4681 gtttggcaat gattataata attatgaatt taatgctgca ggtggattct tagggggctt
     4741 tttaattcta gagttggaga tgtaaatttt aataatatcc aaatgaaatt tggaaaagaa
     4801 acaaaaataa aagttcaaaa atatagaact aataataaag agatgttcca aggtttattt
     4861 atgggatatt ttgttaaaga ttggtgggat ggaatattaa aaacaaacaa tattttcgta
     4921 tactatgaaa aaaattctcg agatacttac gctggttatt atgatgttaa aggtaaattt
     4981 tttggagaga ttttaaatga ttctgctctt gcacatggaa gaggctttga attttatgat
     5041 tataatataa aaaataaagt tattaatgaa gcaatggttg gatttttaga gaatcaagga
     5101 ggggtagtta gtaaagatta taacaatgga tatgtttctt attatgatgg taatgcaaaa
     5161 attactccag aagtacctga ttttaaagat cctgtattat ccaaaaatga ctttgatcca
     5221 aaattacttc aaagaatttt agatgatttg atgaatggaa aatacactta tgattttgat
     5281 accaaaactt ggacttacgc agatagcaag ggtgtggtag gggaaaatga agccagtgag
     5341 atcactcaaa gtttaaattt cttaaatgcg tttaaagata ccggagtaga acaagaattt
     5401 ttaaagttat ggcaaggttc gcaagaacaa agttataaga attacgccaa tctttatgaa
     5461 aaatggacgc aaaagaaaac tgctatggat aaaatcaaaa ccggcgaagg ttatttcgct
     5521 agttttaaag aagaattata aaaataccaa gaagccttag ctcaacttga caaagaaaat
     5581 aaaaactatg aaaaaatcaa agaatcaggc ttagttagcg atgaaacact taaagttatg
     5641 catgaaaaac ttttagaaca aaaagaagct cttgaaaagc agtttgcgga tcttagtgga
     5701 aatgaaggat ttcactataa gcttgaaaat gagattctaa attctcaagg ttttgctata
     5761 aatggaagcg atgtagatgg taaagtgtac actggaaaat ataattttga aggaaaatta
     5821 gcctcattgc cagaaaaatc aaatatatct atctatgagc cagataaaca aaaaaaagag
     5881 ggaggggggg tgaagatcca gacaaacctt ctgtattgcc gcctgaaatt cctgaaaagg
     5941 ttgtagaagc tcctataaaa attcaaacta aagtagacac aaaaaaaaga agatgatgat
     6001 caagtggaca taggagaagt agatgctaga agtagtggtt tgcgttgtat tgtaagtgat
     6061 aattttaaga caatgaacat ttgtgtaaat gcaaaatagg aaataaaaat gagaaaaatt
     6121 ttagttgttt taatcttatt gtaagtattt tcacatgctg aagagctaaa taataataaa
     6181 ataagagagc ttatagaaag ctcttctgaa gcaaatggac cacaaaataa aaattaaaaa
     6241 atacattaaa aaatcaaaaa agccctgtaa attttaaaga gcaaaatact acaaatattg
     6301 caaatttaca aactgatcaa aatgaagcta aggtttttgt aagagagtat gttttgcata
     6361 tcgataataa agatttgaca tttaaaaaat taagaattag cgaaaaataa attcaagatg
     6421 caatagctga atatcgcaac caagaattaa gcttacaaaa tttaaaagat ataacaaaca
     6481 ttatagttta ttattgtcaa ttaagtggcc atccttcggc aactgcttat ataccaccgc
     6541 aagatttaag ttctaacaaa gtgcaaatta acatagtttt tggaactttt aggaaaagta
     6601 attattaaaa acaactcagg tgtcagagat tatgctttag agagtaaatt gaacaaaaat
     6661 cttaaaggga aagttatcac aactaaaaat gtggaaaatg aaatttataa aatcaatgaa
     6721 atatacggaa tccaaaccaa tgctaattta caatcaggtg atggttgtgg agaaagcgat
     6781 gttattatag aagtaaacaa aggtgatagt gcaactttaa ctttatattc taacaactat
     6841 ggggctaaag aaacaggtcg ttttagagca ggaatgagtc aaagtttaaa caatatagca
     6901 agacaagggg ataacttaaa tttttatctt caagatagcg atgaaaatca aatagattat
     6961 gggattaatt atagtacttt tataggaaat ttaaaaatta ctccatttgc aactcaagga
     7021 cattatgttc ttggtggaat ttatagaaat cttggttttt atggggactc tatgaatgtt
     7081 ggggtaaatt tttcttatcc tgtgttttta tataccgagt attctttata tcttgtttcg
     7141 ggttttactc ataaaaagat taaagattat tatcttgatg gtttagtaag taatgaaaaa
     7201 gcgagcaata gtgtaaattt aggcatagaa ggaacctata aaggtttgga gaataatgtc
     7261 ctaagttata ccttaaattt tacatatggc aatgttgaaa atgatggtga ttcgtctgga
     7321 tttaatggag taaatttagg gaattttgga aaaatgaatt taaatttaag caacaaatat
     7381 caattctaag aacgcttaac tcacattttt caactcaatt atcaaaaagt tatcggtggt
     7441 gctgttttag atggtagtga atccgtgtct ttaggtggac cttatggtgt gcgtgcttat
     7501 ttagaaggcg aggggagtgc ggataatgtt gtttctggca ccttaggaat aagatttcaa
     7561 acacctttag aagggcttta cttgactcct ttttatgata taggatattc ttggtatgaa
     7621 aataaagaat atcaaagcaa aaatcattat tttatggatg caatgggtat gcaaatactc
     7681 tatacaagaa gtgctaattt ttatgtaaaa atggatgctg caagagctgt tcatcggttt
     7741 aaacacgatg gagaacatcg agcaagagtt tatgtaagcc taggaaaata cttttaactt
     7801 tggggtgatt ggagaaat
//
LOCUS       DAZBIH010000070         7797 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.071, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000070 DAZBIH010000000
VERSION     DAZBIH010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7797
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.071"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            43..522
                     /gene="aroQ"
                     /locus_tag="ACHFOB_001266"
     CDS             43..522
                     /gene="aroQ"
                     /locus_tag="ACHFOB_001266"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II 3-dehydroquinate dehydratase"
                     /protein_id="HFN5800056.1"
                     /translation="MKIMIIQGPNVNMLGVREVGIYGAMKMEEIHEQMKLAASQNNVE
                     LDFFQSNFEGEIVDKIQECLGTVDGIIINAAGYTHTSVAIRDAIAAVALPTIEVHISN
                     VYRREEFRQKSLIAPVCSGTIVGFGPFGYHLALMGIIQICEQIKNLRAMQQAQQTNK"
     gene            525..998
                     /gene="folK"
                     /locus_tag="ACHFOB_001267"
     CDS             525..998
                     /gene="folK"
                     /locus_tag="ACHFOB_001267"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003848 -
                     2-amino-4-hydroxy-6-hydroxymethyldihydropteridine
                     diphosphokinase activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HFN5800057.1"
                     /translation="MLKIQGVKHFEKSRFFPFFSQNIRSFKYLALIGLGSNIEPEKKR
                     FDMLFRVMMDDKRFKILSTSPMLINEAFGFKEQKDFTNAVMLIQTNLHARALLKVLLY
                     YEVKFKRKRTFKNAPRTLDLDLLYFSQKVKRDKWCEVPHKGAKERVSVILPLGMI"
     gene            1008..2462
                     /gene="flhF"
                     /locus_tag="ACHFOB_001268"
     CDS             1008..2462
                     /gene="flhF"
                     /locus_tag="ACHFOB_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0044781 - bacterial-type flagellum
                     organization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HFN5800058.1"
                     /translation="MGQLIHTFTVEDTEQIIPKVKEDYGNKALIITNKQIRPKTLNRS
                     ALYEVMVAIEESDYEEHLKKQGKSLPAKKSSPKPSSTSLAEEKIRSQIPQEDEDVVLD
                     FSNTRLNTNLNTVKNNDLTKKTYQDFPQNKINPHQNKTLGFDDFKEKLSEVSNEISKV
                     TNTPLENYTPNPNYNKKIENFEKQFEKQINKLNDKIDLLADMMWDDKAEARKNLMIPP
                     EFASIYKQAKESGMLENHLEAIMKATIENMPAAMKTNKDAVQRYFHSLLRNILPCRVE
                     SDIKKQKIMMLVGPTGVGKTTTLAKLAFRYAYGDKRYKTGIITLDTYRIGAVEQLFQY
                     AKMMKLPIIDSIEPKDLDEAIKSLNNCEVILVDTIGNSQYDQSKLAKTKEFLMHSNAE
                     IDVNLVVSANTKHEDLMEIYKNFSFLNIDTLIITKFDETKVFGNIFSLVYETNIPLSF
                     FSIGQEVPDDLEVANSDFLVHCILEGFNKGKNNE"
     gene            2455..3321
                     /gene="flhG"
                     /locus_tag="ACHFOB_001269"
     CDS             2455..3321
                     /gene="flhG"
                     /locus_tag="ACHFOB_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagella biosynthesis ATPase FlhG"
                     /protein_id="HFN5800059.1"
                     /translation="MNNQANKLRNLMSQNGTKKSQNTHFIAITSGKGGVGKSTISANL
                     ANVLANNGYKVGLFDADIGLANLDVILNVRIQKNLLHVLRGECSLEDILIEVKPNLWL
                     IPGESGDEILKYNDKNIYERFLNQASILDELDFLIIDTGAGIGGNILNFLEMADEVIV
                     VTVPDPAAITDAYATIKTTSKTKENLLMLFNVVKNENEALKVFENIKKVADANIKNPL
                     NLEFLGHLSASKDVSGSIKKRTLFSDENTASSDEIKALASKLLYRLERKVLDNVSNRS
                     FSSFFRKIIERF"
     gene            3340..3696
                     /locus_tag="ACHFOB_001270"
     CDS             3340..3696
                     /locus_tag="ACHFOB_001270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800060.1"
                     /translation="MRPENYVAFFTVCGFFIGLAFSIISIDEAFDILIFTCFITFMFY
                     VFVHIAIMNFIDVKKISGRIFNKHDYEKTSNNIINDLVIREKKMDIILEKLNEEREEL
                     KKNEFKERRRNAKRAA"
     gene            3677..4369
                     /gene="fliA"
                     /locus_tag="ACHFOB_001271"
     CDS             3677..4369
                     /gene="fliA"
                     /locus_tag="ACHFOB_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003899 - DNA-directed 5'-3' RNA
                     polymerase activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor FliA"
                     /protein_id="HFN5800061.1"
                     /translation="MLKEPPKAYAQTLKKEQDELVLSYMPALRAMAFRLKERLPSSID
                     VNDLISIGVEEMIKLSRRYDKEQNDNFWGFARKRVNGSMLDYLRSLDVMSRNNRKIIK
                     DIDAIMDEYFLEHECEPDDEYLAKKLDLDVEKIKEVRTAHAISYTLPIDEQIELYNED
                     NTLEKIEKEELLEKIHEVLDDLKERDQLIIQLYYYEELSLKEISEILQISESRISQIH
                     KKLLKKLRERLV"
     gene            4369..5448
                     /gene="fliM"
                     /locus_tag="ACHFOB_001272"
     CDS             4369..5448
                     /gene="fliM"
                     /locus_tag="ACHFOB_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009288 - bacterial-type flagellum
                     [Evidence IEA];
                     GO_process: GO:0001539 - cilium or flagellum-dependent
                     cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HFN5800062.1"
                     /translation="MAEILSQEEIDALLEVVDDNTDTPIASNSKDEKDERNIVVYDFK
                     RPNRVSKEQLRTIKGIHDKLARNLASQISSMMRSIVETKLHSVDQMTYGEFLMSLPSP
                     TSFNVFSIKPLDGNCVLEINPSIAFPMIDRLLGGQGDSYEASRELTDIELNLLDSILR
                     IIMQRLKESWATVTEIYPSIEAKESSPNVVQIVSQNEIVIMVVMEIIIGNSSGMVNIC
                     YPVVHLESILSRLANRDIMMGETSAKKSRNKELKTLIGRAEVVYEAILGKTLINVHEF
                     LELKQGDILRLDREADDKAIVSIDKKDVFLAQIGLHRFRKSIKILELIRTDKDEIKEI
                     LEKYEEERKAKASVYDEPEEEDEEI"
     gene            5445..6287
                     /gene="fliY"
                     /locus_tag="ACHFOB_001273"
     CDS             5445..6287
                     /gene="fliY"
                     /locus_tag="ACHFOB_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009425 - bacterial-type flagellum basal
                     body [Evidence IEA];
                     GO_function: GO:0003774 - cytoskeletal motor activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliY"
                     /protein_id="HFN5800063.1"
                     /translation="MINDFLKMFTNECISTIEGLTGKSAEFSEYKEFDVNASDTLKAP
                     LVYAIFNIANGGKIGILAGAVLMSAIGEWMMGEEEITKNDKLGPDEMDAAKEAIQNII
                     SAFSTTLGAQKDIPKMDFSIESCEFVPESVDFKDFKKLFLYDVKIGDLEEQVSLAMDQ
                     TLHNILSGKPAETGNTSTDSNHNTEEKAIMLSEELKNINLIMDVRLPVRVRIGNKKML
                     LKDVLTMDIGSVVELNQLANDPLEILIGDKRIAYGEVVIVDGNFGVQITEIGSKKERL
                     EQLR"
     gene            complement(6336..6934)
                     /locus_tag="ACHFOB_001274"
                     /pseudo
     CDS             complement(6336..6934)
                     /locus_tag="ACHFOB_001274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343522.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
     gene            complement(6919..7774)
                     /locus_tag="ACHFOB_001275"
                     /pseudo
     CDS             complement(6919..7774)
                     /locus_tag="ACHFOB_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343521.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2924 a         1112 c         1340 g         2421 t
ORIGIN      
        1 gttataataa aaggttaaaa ataaattttt aaggttaaat ccatgaaaat aatgattatc
       61 caaggcccaa atgttaatat gcttggcgta agagaagtgg gaatttatgg tgctatgaaa
      121 atggaagaaa ttcacgagca aatgaaactt gcagcatcgc aaaataatgt agaacttgac
      181 tttttccaaa gtaattttga aggtgaaatc gtagataaaa ttcaagaatg ccttggaaca
      241 gttgatggaa ttattatcaa tgcagcaggc tatactcata cttcagtagc tattcgcgat
      301 gctattgcag cagtagcttt gcctacaatt gaagtacata ttagcaatgt ttatcgcaga
      361 gaagaatttc gtcaaaaaag tcttatagcg cctgtatgtt ctggaactat tgttggtttt
      421 ggtccttttg gctatcactt ggctttaatg ggtataattc aaatttgcga acaaataaaa
      481 aatttgcgcg caatgcaaca agcacaacaa acgaataaat aataatgcta aaaattcaag
      541 gagtaaaaca ctttgaaaaa agtcgttttt ttcctttttt tagtcaaaat atacgatctt
      601 ttaaatattt agctcttata ggcttaggaa gcaatataga gcccgaaaaa aaaagatttg
      661 atatgctttt tcgagtaatg atggatgata aaagatttaa aattttatcc acatctccta
      721 tgttgataaa tgaagccttt ggttttaaag agcaaaaaga ttttaccaat gctgttatgt
      781 tgatacaaac taatttgcat gcacgagcac ttttgaaagt tttactttac tatgaagtaa
      841 aatttaaacg caagagaact ttcaaaaacg ctcctagaac gcttgattta gatcttttat
      901 acttttcaca aaaagtcaag cgtgataagt ggtgtgaggt gcctcataaa ggggctaaag
      961 aaagagtgag tgtaattttg cctttaggca tgatataagg aatataaatg ggacaactta
     1021 tacatacttt tactgttgaa gatacagaac aaattatacc caaagtaaaa gaagattacg
     1081 gaaataaagc tttaattata acaaataaac aaattcgtcc taaaacctta aatcgcagtg
     1141 cgctttatga ggttatggta gccatagaag aaagcgacta tgaagaacac ttaaaaaaac
     1201 aaggaaaatc tttacctgca aaaaaaagct cgccaaaacc atcttctacc tctcttgcag
     1261 aagaaaaaat tagatctcaa atccctcaag aagatgaaga tgtagtcttg gatttctcaa
     1321 acactcgctt aaatacaaat ttaaacactg taaaaaacaa tgacttaact aaaaaaacct
     1381 atcaagattt tccgcaaaac aaaatcaacc ctcatcaaaa taagactcta ggctttgatg
     1441 atttcaaaga aaaactaagt gaagttagca atgaaatttc taaagtcaca aacacacctt
     1501 tagaaaatta cacccctaat ccaaattata ataaaaaaat agaaaatttt gaaaagcaat
     1561 ttgaaaaaca aatcaacaag cttaatgata aaatagatct tcttgcagat atgatgtggg
     1621 acgataaagc tgaagctaga aaaaatctta tgatacctcc tgaatttgca agtatttata
     1681 aacaagccaa agaaagtgga atgcttgaaa atcatctaga agcgattatg aaagcaacta
     1741 tagaaaatat gccagctgct atgaaaacca acaaagatgc ggttcaaaga tattttcact
     1801 cacttttaag aaatatcttg ccttgtcgtg ttgaaagcga tataaaaaaa caaaaaatca
     1861 tgatgctagt aggcccaaca ggagtcggaa aaacaacaac cttagctaag ttagcttttc
     1921 gctatgctta tggagataag cgttataaaa caggtattat tacgcttgat acttatagaa
     1981 tcggtgcggt tgagcaactt tttcagtatg caaaaatgat gaaacttcct attattgata
     2041 gcatagaacc aaaggattta gatgaagcga taaaaagctt aaataattgc gaagtaattt
     2101 tagttgatac tataggaaat tcacaatacg atcaaagcaa acttgctaaa actaaagaat
     2161 ttttaatgca ctcaaatgca gaaattgatg taaatttagt ggtttctgca aacaccaaac
     2221 atgaagattt aatggaaatt tataaaaatt tttcattctt aaatattgat actttgatta
     2281 ttactaaatt tgatgaaaca aaggtttttg gaaatatctt ctctcttgtt tatgaaacaa
     2341 atattcctct aagctttttc tctataggac aagaagtgcc agatgattta gaagtagcca
     2401 atagtgattt tctagttcat tgtattttag aagggtttaa caaaggaaaa aataatgaat
     2461 aaccaagcaa ataaacttcg caatctcatg agtcaaaatg gaaccaaaaa atcccaaaac
     2521 actcatttta tagctattac aagtggaaaa ggtggcgttg gaaaaagtac gattagtgcg
     2581 aatctagcca atgttttagc aaataatggc tataaagttg ggctttttga tgctgatatt
     2641 ggcttggcaa atttggatgt cattttaaat gtacgcatac aaaaaaatct cttgcatgtt
     2701 ttacgcggag aatgctcctt ggaagacatt ttaatagaag ttaagccaaa tttatggctc
     2761 atcccaggcg aaagtggaga tgagatttta aaatataatg ataaaaatat ttatgagaga
     2821 tttttaaatc aagcaagtat tttagatgaa cttgattttc ttattatcga cacaggtgcg
     2881 ggtattggtg gaaatatttt aaatttttta gaaatggctg atgaagttat agtagtaact
     2941 gttcctgatc ctgcagcaat cactgatgcg tatgcaacca taaaaacaac ttctaagaca
     3001 aaagaaaatt tactaatgct ctttaatgtt gtaaaaaatg aaaatgaagc tttaaaagtt
     3061 tttgaaaata ttaaaaaagt tgcagatgca aacattaaaa atcctttaaa tttagaattc
     3121 ttaggtcatt taagcgcttc taaagatgta agtggtagta ttaaaaaaag aactttattt
     3181 agcgatgaaa acacagcctc aagtgatgag attaaagccc tagcttccaa gcttttatat
     3241 agattggaac ggaaagtgct tgataatgtt tcaaatcgta gtttttcaag tttttttaga
     3301 aaaattattg aaagatttta gcaataaaga gaagagatta tgaggccaga aaattacgta
     3361 gcatttttca ctgtttgtgg attttttata ggacttgcat ttagcattat tagtatagat
     3421 gaagcctttg atatactgat ttttacttgt tttattactt ttatgtttta tgtttttgtt
     3481 catattgcta ttatgaattt tatagatgta aagaaaatta gtggcagaat ctttaataaa
     3541 cacgattatg aaaaaactag caataatatt atcaacgatt tagttattcg tgaaaagaaa
     3601 atggatataa ttttagaaaa gctcaatgaa gaaagagaag agctaaagaa aaatgaattc
     3661 aaagaaagac gaagaaatgc taaaagagcc gcctaaagct tatgcacaaa cgctaaagaa
     3721 agagcaagat gagcttgtgc tttcttacat gccagctctg cgtgctatgg cttttagact
     3781 aaaagaacgc ttgccttcaa gtatagatgt taatgatctt attagcatag gcgttgaaga
     3841 aatgataaag ctttcacgcc gttacgataa agaacaaaat gataacttct ggggttttgc
     3901 aagaaaaaga gttaacggct ctatgcttga ttatcttaga agtcttgatg taatgagtcg
     3961 aaataatcgt aaaattatta aagatattga tgcaatcatg gatgaatatt ttttagaaca
     4021 tgaatgcgaa cctgatgatg agtatctagc caaaaaactt gatttagatg tagaaaaaat
     4081 caaagaagta agaacagctc atgctattag ctataccctg cccattgatg agcaaatcga
     4141 actttataat gaagacaata ctttagaaaa aattgaaaaa gaagaacttt tagaaaaaat
     4201 tcacgaagtg ctagatgatc ttaaagagcg cgatcagtta attattcagc tttattatta
     4261 tgaagaatta agcctaaaag aaatcagtga aattttacaa atcagtgaaa gcagaatttc
     4321 acaaattcac aaaaaacttc ttaaaaaact tagagaaagg ctagtgtaat ggctgagata
     4381 ctctcccaag aagaaattga tgctctactt gaagttgtcg atgataacac cgacacaccc
     4441 atagcctcaa attcaaaaga tgaaaaagat gaaagaaata tcgttgtata tgattttaag
     4501 cgtcccaaca gagtttcaaa agaacaactt aggacgatta aaggcataca tgataaatta
     4561 gcaagaaatt tagcctctca aatttcatcg atgatgagaa gtattgttga aactaaactt
     4621 cattcagtcg atcagatgac ttatggagag tttttaatgt ctttgccaag cccaacaagt
     4681 tttaacgttt tttctatcaa acctttagat ggaaactgtg ttttagaaat caatccaagc
     4741 atagcttttc ctatgataga tagacttttg ggcggacaag gtgatagcta tgaagcttcg
     4801 cgtgagctta cggatattga gcttaatttg cttgattcta ttttgcgtat cattatgcaa
     4861 agacttaaag aaagctgggc taccgtaact gaaatttatc ctagtataga agctaaagaa
     4921 tcaagtccaa atgttgtaca aatcgtatct caaaatgaga ttgttatcat ggtggtaatg
     4981 gaaatcatca taggaaattc aagcggaatg gtaaatatct gctatcctgt agtacattta
     5041 gaaagtatat tgagccgttt agcaaaccgt gatattatga tgggtgaaac ctcagccaaa
     5101 aaatcacgca acaaagaact taaaacttta atcggtcgtg ctgaagtggt atatgaggca
     5161 attttaggaa aaaccttaat taatgttcat gaatttttag aacttaaaca aggcgatatc
     5221 ttaagacttg atagagaagc agatgataaa gctatagtaa gcatcgataa aaaagatgtt
     5281 ttcttagcac aaattggatt gcatcgtttt agaaaatcta ttaaaatttt agaacttata
     5341 cgcacagata aagatgaaat caaagaaatt ttggaaaaat acgaagaaga gcgtaaagct
     5401 aaagctagtg tttatgatga gcctgaagag gaggatgaag aaatatgatc aatgattttt
     5461 taaaaatgtt tacaaatgaa tgcatcagca ccattgaagg tttaacagga aaaagtgctg
     5521 aatttagcga atataaagaa tttgatgtca atgcaagcga tactttaaaa gcacctttag
     5581 tgtatgctat atttaatata gcaaatggtg gaaaaatagg aattttagct ggtgctgttt
     5641 taatgagtgc tattggtgaa tggatgatgg gtgaagaaga gatcaccaaa aacgataaac
     5701 taggtcctga tgaaatggat gcagctaaag aagccatcca aaatatcatt tcagcatttt
     5761 ctacaacctt aggagcccaa aaagacattc caaaaatgga ttttagcata gaatcttgtg
     5821 aatttgtgcc tgaaagcgta gattttaaag attttaaaaa attattttta tatgatgtaa
     5881 aaataggcga tttagaagaa caagtttctt tagccatgga tcaaacactc cataacatcc
     5941 taagcgggaa acctgctgaa acaggaaata caagcactga ttctaatcac aatactgaag
     6001 aaaaagcgat aatgcttagc gaagagctta aaaatatcaa tcttatcatg gatgtgcgtt
     6061 tgcctgttcg tgtgcgtata ggcaataaaa aaatgctttt aaaagatgtt ttaactatgg
     6121 atataggttc agttgtggag cttaatcaac ttgcaaacga tccgcttgaa attttaattg
     6181 gggataaaag aattgcttat ggcgaggtag taattgtcga tggtaacttc ggcgttcaaa
     6241 ttacagaaat tggttctaaa aaagaaagat tagaacaact aagataaaaa gttttagcct
     6301 acaaattaag aataataaat ataaacgaat taaaactaaa acaaactaaa agggctgaaa
     6361 tcaaaatgta aagattttgg agtgtttaac ttaaaaggtt ttagctcttt tttaggagca
     6421 acaattaaag cataaccacc tttattatat ctatcccaaa tactaaaaaa ttgactttta
     6481 gaacttatat attctccatg gcttggatca agcacttgta aataattacc tttatgattg
     6541 ataattataa caaaatgtgg aaagcgtgga tcatcttcaa tttttacaag cattggaata
     6601 tttacaagtt tatccaagtt ttctctattg atttgatatg aattgctttg aaagcccagt
     6661 tttttaactg catcgtttaa atctgcaaag cttaccatat ccgtataaag ttcttgtccg
     6721 ctcataatct ttaaaagttc aagttcatca aacttttttg atcatcaagt atattaagta
     6781 aagttgctaa agatgaagca ccacaagatt gctcataagt ttgtcttatt actctttcgt
     6841 ttttaatttc ttgataagac ttaactaccc attcggcttt tgtgctcaaa gcaagaatgg
     6901 gtaaaaataa taaaattttt agaatttttt ccataagctt atcccaaata tgctatcagg
     6961 agaagcagag cttcctccaa aactagcatt aacagaaact gcggtatctg aattaatgct
     7021 ataagtagaa cctaaactta aagttggaat agaacgcact tcagaatttt gatagccatt
     7081 gattttttgt ttcatttgaa atctttgctc tgctcctaaa tctaaagtaa ttttaggact
     7141 tagaataata gataaatccc cgcccacata aatactattt ccatactcta ttttaagggt
     7201 tttaaatttt cttgattgat tataaccaaa tcctgtataa atactataaa ccacaggatc
     7261 gctatatccc cttaaactag cttgtaagct ttgtgatttt agataaaagt ttttggtttg
     7321 attgattgct ttttctcttt gaacgactgt agtttgaaag gtaatttgtg gaattaaatc
     7381 tgcaatacta tcgcctgtat aaataaaacc tagccataga ttatcaaatc ctatgcgatc
     7441 tttatgggaa tatgcatttg tgaaaaaatt tgtatattct tgtcttgcat aacttccgcc
     7501 ccctgaaata agtatgtcaa acttaggtgt tagggtataa atgaaagttt gagttaaaaa
     7561 cacctgcttt gtatcattcc aaattgtagg atctccgcct attgttatat taggataaag
     7621 agaatacgag tttgcgtttc ctgtgctaag taaagaaaag cttgtaatgc ttcttaagcc
     7681 tatttgcttt ttaaataaac tgtctaatat ttagttcatc gctagcaaaa acacaattaa
     7741 ctaaaaccat aaatgttaag aaaatttttt tcattgtcaa tccttacatt ttaaata
//
LOCUS       DAZBIH010000071         7710 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.072, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000071 DAZBIH010000000
VERSION     DAZBIH010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7710)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7710)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7710
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.072"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            356..850
                     /locus_tag="ACHFOB_001276"
     CDS             356..850
                     /locus_tag="ACHFOB_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800064.1"
                     /translation="MKEVKGGYITYLKRLSDNEVIAFAKPDWNLELTLFQDSNGDQYY
                     WNREGLVRFGGMCGIETTNCLVNGKHSYINQKRLWETMSIVGDDPYRNFLGYTVKRNI
                     GISNLGKRFVYFSYGVAVINEQSGSWYRVKSSPVLNNYRVVKEISSNYKDFLERYLGG
                     YSIK"
     gene            864..1652
                     /locus_tag="ACHFOB_001277"
     CDS             864..1652
                     /locus_tag="ACHFOB_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800065.1"
                     /translation="MINSLNSNLNYDYNTSNFKQDKNIDFKINKHGVAVITGEGALPY
                     RGKKFEYNPKIFGLDESISKKDMQEFNNFMKSNALKDPNKIEKSPLKDFNPAYTKWDP
                     TTEKMMLGFFVSYSKMFHLGYDIIKKADEFYKEFDALISKDLSLNEFKTKYIDFKQRH
                     DEFVKEYEMAMGDKMLLSSDDEIITQQSEKPFKAIQGESKNKETYKDDSTRNELVKKL
                     LEGKFSTSKELELLFGMKFSDDDAGEFNKILSLNSTPKSIDIKA"
     gene            1773..2378
                     /locus_tag="ACHFOB_001278"
     CDS             1773..2378
                     /locus_tag="ACHFOB_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0009691 - cytokinin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00730 family Rossman fold protein"
                     /protein_id="HFN5800066.1"
                     /translation="MNEKISQDLEKFANIPNLKNAVTFFGSARLKEDNFYYQQAKILA
                     QKCAQNGFCVISGGGGGIMRAANEGAFSQKNNTNSMSSVGFNIFLPHEQKLNDFVEYN
                     ITFESLAIRKMALIEKSLAFVIFPGGFGTLDELCEILTLKQLEFKKDVPIILFGSEFW
                     RGFDEFVRNSLLKLEVISKGDELKYKITDDLDFIINTLKEI"
     gene            2378..3394
                     /gene="mnmA"
                     /locus_tag="ACHFOB_001279"
     CDS             2378..3394
                     /gene="mnmA"
                     /locus_tag="ACHFOB_001279"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HFN5800067.1"
                     /translation="MKILVAMSGGVDSTVTAYKLKNLGHEVIGCYMKLHGKPNYHEEN
                     IKKVEKVANFLQIPYHILDLQEDFKNKVYMPFVDTYKEGKTPNPCALCNRFIKLGKLL
                     EFAKSLGCEKLATGHYARLENNLIKTAVDESKDQSYFLASADKEALKYLIFPLGEMKK
                     EDVKKFASTIEVLKSFATQKESSEICFVEDTYVQVLDQFMDTKIPGEVLDSSGKVVGK
                     HEGYMHYTIGKRRGFEVRGAHEPHFVLKINPKQNQIIVGTKEELKISEFNLKNINLFI
                     DAKELDCEVKIRYRSKSTPCKVEIYEDKSAKIILKDPVYGLASGQMAVFYDHDKVIAS
                     GFIE"
     gene            complement(3422..3667)
                     /locus_tag="ACHFOB_001280"
     CDS             complement(3422..3667)
                     /locus_tag="ACHFOB_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN5800068.1"
                     /translation="MFFIVQLALGAPPLFYAFIMIASGNVMMALTHYAIGTAPVIFGT
                     GCVTLKKWWSIGFVISIVDIVVMIAVGLFWWKILGFY"
     gene            complement(3790..3957)
                     /locus_tag="ACHFOB_001281"
     CDS             complement(3790..3957)
                     /locus_tag="ACHFOB_001281"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN5800069.1"
                     /translation="MALLGLSLVLISGVLTFGEVLAEKAAWNTLVWFSALVMMATLFG
                     KLGVTQFLAEA"
     gene            complement(3968..4192)
                     /locus_tag="ACHFOB_001282"
     CDS             complement(3968..4192)
                     /locus_tag="ACHFOB_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN5800070.1"
                     /translation="MFLPGIAAMLLMPLMLYFLSPLEIKSTPNASTFAKDKLKELVKM
                     KNSEKIILSVFVSLLLLWAGALGLFFWNFS"
     gene            complement(4246..4644)
                     /locus_tag="ACHFOB_001283"
     CDS             complement(4246..4644)
                     /locus_tag="ACHFOB_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002858798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SLC13 family permease"
                     /protein_id="HFN5800071.1"
                     /translation="MKDALSGFSNSLIWFIVISIIVARGVIKTGLGEHLAYHFISILG
                     KKTLGIAYSIAFCETILAPVTPSNTARAGAIINPIVQVIARSFKSTPEDGTQNKIGTY
                     LSLVNYQEPILFHQLCLLQLQLQILWWLIL"
     gene            complement(4716..5021)
                     /locus_tag="ACHFOB_001284"
     CDS             complement(4716..5021)
                     /locus_tag="ACHFOB_001284"
                     /inference="COORDINATES: protein motif:HMM:NF013132.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anion permease"
                     /protein_id="HFN5800072.1"
                     /translation="MDRKKIPLLVLCILIAAVFWLVPTPVGLEDNSWHFLGLFIAVIM
                     AVILQVMPFIAIAIVALSGYYHYPIENLSKIYTKATSKTSTQQLIDETKISFKYFST"
     gene            complement(5177..5274)
                     /gene="ffs"
                     /locus_tag="ACHFOB_001285"
     ncRNA           complement(5177..5274)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="ACHFOB_001285"
                     /product="signal recognition particle sRNA small type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00169"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00169"
     gene            5454..6260
                     /locus_tag="ACHFOB_001286"
     CDS             5454..6260
                     /locus_tag="ACHFOB_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002826921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin family protein"
                     /protein_id="HFN5800073.1"
                     /translation="MEVKWSRDFSIKNMQLDKQHELIFEITNLANDLALNIQDNNTQH
                     KNDLKQILVKLFQYIKIHFKDEEKFMESIDFPLIEEHKKSHQILVEKTKKLLEHSDNI
                     VKMSQELSILTKDWILDHFANEDLWIANFTKKALHLQEIHYTLEQYIKLKSIKQDLRA
                     EKTYDYICNCSLRIHAVPQTIHQELVSKENTLKCEKCGQILVHLDYFDLNQNFEKFNA
                     IFEDALQNHHFTTQKNDMGGGIDEFSSKNLRNFQSFRKFKSRTSKHRTNS"
     gene            6175..>7710
                     /locus_tag="ACHFOB_001287"
     CDS             6175..>7710
                     /locus_tag="ACHFOB_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein A"
                     /protein_id="HFN5800074.1"
                     /translation="MNFQVKTLETFNPFESLNHEQANTEQILDFRVIDFKLLCSSVKP
                     AKTKTYERKDFDLFYADDFFVKNYNTIVQKFLIEIYPKTQSFPFTVKLRSNSNLTHLK
                     ASINLTENFKYYPNLKFDILQNIYKIMIKQKFLILRLDKNLFDKIDDFILSIQKSPSI
                     KEIELEIAKGVDKIEHKSDEIIYHRDVNEECFDENINYDEGNYCKPIEKNELLFEYIY
                     RILGKEGRNLRGEILHLNPIAFLDNPFIIKDESIYTEELEDRIKYFSANYGFLNKDHT
                     GYCIANNLKLSQIGLKTTGSIKTNIDENINLEITNFDISDDAIKSGIVNVQASNIKVN
                     GNVGATKLYGKNISIKGLTHAKSEIFAQDIFITTYKGTLQADTVYIKNLENGTIIAKN
                     VFVENCMGGKIEAENIYICNLLTDNTLYPRKNLIITNNIKFKNNIVVSPLVSIENNSD
                     TECENLKNLSLKIKSKLDDTISKMQNYYDYLIKNQIKIIKLQKTKNPNAIEMKFSNLY
                     HDII"
BASE COUNT         3084 a         1109 c         1173 g         2344 t
ORIGIN      
        1 tctaagataa aatattttaa aatctttaaa tatttttact tgcttaatat aatttaagat
       61 aaaaatgaaa atttgttaca aaagcaaaca aaccgagaat aaaattttaa gtatttaaag
      121 aaaattcact taactttcaa agcaagatta aacttttgct agaataagtc gatagtagtt
      181 ttaaagaact tacaaaaaga atttatgaaa ggatttcaat gaaaaagatt tttgctttat
      241 tagctttaac ttctttatga ctagttctgt ttttgctgag gattttttag ctaaactcac
      301 aaaaggtgcc ttaagcgata caagcccggg tgtcaaagaa ctcagccttg aagagatgaa
      361 agaagtgaag ggtgggtata taacctattt aaaacgactt agtgataatg aagttatagc
      421 ctttgccaaa cctgattgga atttggaatt aactttattt caagatagta acggagatca
      481 atattattgg aatagagaag gacttgttcg atttggtgga atgtgcggta tagaaactac
      541 aaattgtttg gttaatggta agcattccta tatcaatcaa aaaagacttt gggaaactat
      601 gagtatagtg ggcgatgacc cttatcgtaa ctttcttgga tatactgtga aaagaaatat
      661 tggtatttct aatttaggga aaagatttgt gtatttttct tatggagtgg ctgtaatcaa
      721 cgaacaatca ggttcttggt atagagtaaa atcaagtcct gttttgaata attacagagt
      781 agttaaggaa atcagttcaa actataaaga ctttttagaa agatatcttg gtgggtattc
      841 tatcaagtaa agaggaaaaa ctaatgataa atagtctaaa ctcaaattta aactatgatt
      901 ataacacttc aaattttaaa caagataaaa atattgattt taaaatcaac aaacacggag
      961 tagccgttat aacaggagaa ggtgctttgc cttatcgtgg aaaaaaattt gagtataatc
     1021 ctaaaatatt cggacttgat gaaagtatta gcaaaaaaga tatgcaagaa tttaacaact
     1081 ttatgaagtc aaatgcttta aaagacccca ataaaataga aaaatcccct ttaaaagatt
     1141 ttaatcctgc ttatacaaaa tgggacccaa ctacggagaa aatgatgtta ggtttttttg
     1201 tttcttattc taagatgttt catttgggct acgacatcat caaaaaagcc gatgaatttt
     1261 ataaagaatt tgacgcactt ataagtaaag atttaagctt aaatgagttt aaaactaaat
     1321 acatagattt taagcaaaga cacgatgaat ttgtgaaaga atacgaaatg gctatgggtg
     1381 ataaaatgtt gctttctagt gatgatgaaa ttatcactca acaaagtgaa aaacccttca
     1441 aagccattca aggcgaaagt aaaaacaaag aaacttacaa agatgatagc acaagaaacg
     1501 aacttgtaaa aaaactatta gaaggtaaat ttagcactag taaagaatta gaacttcttt
     1561 ttggtatgaa atttagtgat gatgatgcag gagaatttaa taaaatcctt tctttaaatt
     1621 ctacaccaaa aagtatagat attaaagctt aaggatttaa aagtctttaa attcctaatc
     1681 ttaataaaat aaacctatta aaacttatat aataaagaac ttattataaa tttttagcta
     1741 gaatggaatt tattttaact aaaggttgaa aaatgaatga aaaaataagc caagatttag
     1801 aaaaatttgc taacatacca aacctaaaaa atgccgtaac tttttttggt tcagcaagac
     1861 ttaaagaaga taatttttat tatcagcagg ctaaaatttt ggcacaaaaa tgtgctcaaa
     1921 atggtttttg tgtgataagt ggtggaggtg gtggtattat gcgtgcagcc aacgaaggtg
     1981 ctttttcaca aaaaaataat acaaattcaa tgagttctgt agggtttaat atatttttac
     2041 ctcacgagca aaaacttaat gattttgtag aatataatat tacttttgag agcttagcca
     2101 tacgcaaaat ggctcttatt gaaaagagtc tagcttttgt gatcttccca ggcggctttg
     2161 gaacacttga tgaattgtgt gaaattctta cattaaaaca attagaattt aaaaaagatg
     2221 ttcctattat tttgtttggg agtgaatttt ggcgaggttt tgatgagttc gtcagaaatt
     2281 ctttactcaa acttgaagtg atttctaaag gagatgagtt aaagtataaa atcactgacg
     2341 acttggattt tataattaat actttaaagg aaatttaatg aaaattctag tcgctatgag
     2401 cggtggagtt gatagtacag tcactgctta taaacttaaa aatttaggtc atgaagttat
     2461 aggttgttat atgaaacttc atggcaaacc aaattatcac gaagaaaata tcaaaaaagt
     2521 agaaaaagtt gcaaactttt tgcaaattcc ttatcatatt ttagacttac aagaagattt
     2581 taaaaacaaa gtttacatgc cttttgtgga tacttataaa gagggtaaaa caccaaatcc
     2641 ttgcgcttta tgtaaccgtt ttatcaaact tggaaaactt ttagaatttg ctaaaagttt
     2701 aggttgtgaa aaacttgcca cagggcatta tgcaagactt gaaaacaact taataaaaac
     2761 cgcagtagat gaaagcaagg atcaaagcta ttttttggcc agtgcagata aagaagcttt
     2821 aaaatatctt atttttccgc taggcgaaat gaaaaaagaa gatgtgaaaa aatttgcttc
     2881 cactatagag gttttaaaat cttttgccac ccaaaaggaa agttctgaaa tttgctttgt
     2941 tgaagatact tatgtgcaag ttttagatca gtttatggat acaaaaattc ctggagaagt
     3001 attagatagt agcggaaaag tagtaggcaa acatgagggc tatatgcact ataccatagg
     3061 caaaagaaga ggctttgaag tgcgtggagc gcatgagccg cattttgttt taaaaatcaa
     3121 tcctaagcaa aaccaaatca tcgtaggaac caaagaagaa cttaaaatca gtgaatttaa
     3181 cctaaaaaat atcaatcttt ttatagacgc taaagagctt gattgcgaag taaaaatccg
     3241 ctatcgttca aaatccacac cttgcaaggt agaaatttat gaagataaaa gtgcaaaaat
     3301 catcctaaaa gatcctgttt atgggcttgc tagcggacaa atggcagtct tttatgatca
     3361 tgataaagtc atagcaagtg gttttataga ataatttcta ggaattaatt cctagaaatt
     3421 attaataaaa tcctaaaatt ttccaccaaa aaagcccaac agctatcatc accactatat
     3481 caactatgga aatcacaaaa cctatactcc accatttttt aagagttaca cagcctgttc
     3541 caaaaataac aggagctgtt cctattgcat agtgagttaa tgccatcata acattacctg
     3601 aagctatcat aataaaagca taaaaaagtg gtggtgctcc taaggcaagc tgcactataa
     3661 aaaacaaaaa acattgctga tatatgagct gtaatggaag caaagaaata gtgtgtatat
     3721 aaaaaaagca aggcttaaaa atatcataat agaaatttcc ccaagtccca tagcagaagc
     3781 aaattcacct taagcttcag ctaaaaactg tgtaacgcca agtttgccaa ataaagttgc
     3841 catcattaca agagctgaaa accatactaa agtattccaa gcagcttttt cagccaaaac
     3901 ttccccaaaa gttaaaactc cactaatcaa caccaaagac aacccaagca aagccacact
     3961 agtcgcatca agagaaattc caaaaaaaca agcccaaagc tccagcccat aaaagtaaaa
     4021 gcgagacaaa aacactgagt atgatttttt cactattttt catttttaca agttctttta
     4081 atttatcttt agcaaaagta gaagcattag gcgtggattt aatttctagc ggagagagaa
     4141 aataaagcat caaaggcatc aaaagcatag cagctatacc aggtaaaaac atccctaaag
     4201 cctattaccc ccaagttaaa tacacttcta aatttgtagc ttgtgctata agatcaacca
     4261 ccaaaggatt tggagctgta gctgtaataa acatagctga tgaaatagga ttggctcttg
     4321 ataatttacc aaagaaagat aagtgcctat tttattttgt gttccatctt caggagtgga
     4381 tttaaaactt cttgcaataa cttgaactat aggatttatg atagcccctg ctcttgcagt
     4441 atttgaagga gtaactggag ctaaaatagt ttcacaaaaa gctatagaat aagcaatacc
     4501 taaggttttt ttaccaagaa tactgataaa atgataagcc aaatgctctc caagtcctgt
     4561 tttaataact ccacgagcca caataataga aatcactata aaccaaataa gagaatttga
     4621 aaaaccactt aaagcatctt ttatgcccgt tttagatttt aaatttgata tagcagtatt
     4681 taccttttca tcttatgctc ttttgatata aaaaatcaag tgctgaagta tttaaaggaa
     4741 attttagtct catcaataag ttgttgcgta gaagttttcg aagtagcttt ggtgtaaatt
     4801 ttacttagat tttcaattgg gtagtggtaa tacccactaa gagctactat ggcaatagct
     4861 ataaaaggca ttacttgtaa aatcactgcc ataatcacag caataaaaag cccaagaaaa
     4921 tgccaagaat tatcttccaa acctacagga gtaggtacaa gccaaaacac agctgcaatt
     4981 aaaatacaca gcaccaacaa gggaattttc tttctatcca ttgtttatcc tttgatattg
     5041 gtaatgtaat ttacaatgct taaattctag ttaactaata ttttaataaa tcttaaaatt
     5101 ataattttta aataaatttt taatttataa aaaagctagc ctaattgaaa aatgggaatt
     5161 ttaaaatgaa taaaaccctt ccccagataa ctgcggcaca cactaaaatc aagtgctctg
     5221 ctgtgttccc accctgaagc ggtgcttaaa aatagcattg cacaggtcta agaaaaggct
     5281 taaaaattat atcataatat acttaaaaag ccttgagttg ttaagattca atatataaat
     5341 ttgcaatcaa tccattgttt ttataagaat tttaaaaatt catttgtcaa attattattt
     5401 tattttcaaa aaatacgata taaaaataat tattacatcc aaaaaggaaa aatatggaag
     5461 ttaaatggag tagagatttt agcattaaaa atatgcaatt agacaaacaa cacgaactaa
     5521 tttttgaaat taccaatctt gcaaatgatt tagctctaaa cattcaagat aataatacac
     5581 aacacaaaaa tgatttaaaa caaattcttg taaagctatt tcaatacatc aaaattcatt
     5641 ttaaagatga agaaaaattt atggaaagca ttgattttcc tttgattgaa gaacataaaa
     5701 aatctcatca aatattagta gaaaaaacca aaaagctttt agagcattca gataatattg
     5761 taaaaatgtc tcaagaactt tccatattaa ccaaagattg gattttagat cattttgcta
     5821 atgaagattt atggatagct aattttacaa aaaaagccct acaccttcaa gaaatccatt
     5881 ataccttaga acaatacata aaactaaaat caatcaaaca agacctaaga gctgaaaaaa
     5941 cctatgatta tatttgcaat tgttctttgc gtatccatgc agttccacag actatacatc
     6001 aagagcttgt tagcaaagaa aataccttaa agtgcgaaaa atgtgggcaa attttagttc
     6061 atttggatta ttttgatttg aatcaaaatt tcgaaaaatt caatgctatt tttgaagatg
     6121 cactacaaaa tcaccatttc acgactcaaa aaaatgatat gggggggggg atagatgaat
     6181 tttcaagtaa aaaccttaga aactttcaat cctttcgaaa gtttaaatca cgaacaagca
     6241 aacacagaac aaattcttga ttttagagtt atagatttta aacttctgtg ttctagtgta
     6301 aaaccagcaa aaacaaaaac ttatgaaaga aaggattttg acttatttta tgcagatgat
     6361 ttttttgtaa aaaactacaa taccatagtg caaaaatttc ttatagaaat ttacccaaaa
     6421 acccaaagtt ttccttttac agtcaaactt agatccaact ccaacctaac ccatctaaaa
     6481 gccagtatca accttacaga aaattttaaa tattatccta atttaaaatt tgatatttta
     6541 caaaatatct acaaaataat gatcaaacaa aaatttttaa tcttaagact tgataaaaat
     6601 ttatttgaca agattgatga ttttatctta tcaatacaaa aaagtccatc tattaaagaa
     6661 atagagcttg aaattgccaa aggtgtagat aagattgaac ataaaagtga tgaaattatt
     6721 tatcatagag atgttaacga agaatgtttt gacgaaaata ttaactatga tgaaggaaac
     6781 tactgtaaac ctattgaaaa aaatgagcta ctttttgaat acatttatag aattcttgga
     6841 aaagaaggac gaaatttaag aggagagata cttcatttaa atccaatagc ctttcttgat
     6901 aatcctttta tcataaaaga tgaaagcatt tacacagaag aattagaaga tagaattaaa
     6961 tattttagcg ccaattatgg atttttaaac aaagatcata caggatattg tatcgcaaat
     7021 aatttaaaat tatcacaaat agggcttaaa acaaccggtt caatcaaaac aaatatcgat
     7081 gaaaatataa acttagaaat cactaatttt gatataagtg atgatgctat taaatcaggt
     7141 attgtaaatg ttcaagcttc aaatataaaa gtaaatggga atgttggagc aacaaaactt
     7201 tatggaaaaa atatcagtat caaaggctta actcatgcaa aaagcgaaat ttttgcacaa
     7261 gatattttta ttacaacata caaaggaact ttgcaagctg acactgtata tataaaaaat
     7321 ttagaaaatg ggacaattat agctaaaaat gtatttgttg aaaactgcat gggtggaaaa
     7381 atagaagcag aaaatattta tatttgcaat ttactaacgg ataatacttt atatccaaga
     7441 aaaaatctaa tcataacaaa caatataaaa tttaaaaaca atatcgtagt ttcaccacta
     7501 gtttctattg aaaacaactc agatacagaa tgcgaaaatc ttaaaaatct aagccttaaa
     7561 ataaaaagta agcttgatga caccataagc aaaatgcaaa attactatga ttatctaatc
     7621 aaaaatcaaa tcaaaatcat caaacttcaa aagactaaaa atcctaacgc catagaaatg
     7681 aaattttcaa atctttatca cgatatcata
//
LOCUS       DAZBIH010000072         7709 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.073, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000072 DAZBIH010000000
VERSION     DAZBIH010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7709)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7709)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7709
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.073"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            61..1356
                     /gene="gltX"
                     /locus_tag="ACHFOB_001288"
     CDS             61..1356
                     /gene="gltX"
                     /locus_tag="ACHFOB_001288"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004818 - glutamate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HFN5800075.1"
                     /translation="MYRFAPSPTGDMHIGNLRAAIFNYICARQKNMDFILRIEDTDKA
                     RNIAGKEEEIKEILNLFGISWQHYYIQSENLKFHRQMALKLVSEKKAFACFCTEEELE
                     AKKELAKKQGKAYRYDGTCEKLADIDVLECEKPFVIRLKKPTHTMKFTDFIKGELSFE
                     PENIDSFVIMRTDKTPTYNFACAVDDMLENVTCIIRGEDHVSNTPKQEHIRASLGYNK
                     AMTYAHLPIILNEEGVKMSKREAHSSVKWLLESGILPSAIANYLIMLGNKTPCEIFTL
                     EEAIKWFDISKVSKAPARFDLKKLLQINREHIKMIKDDELNKILDLNKDLAQLAKFYT
                     QEASTIKELKEKMRAIFNTKDFGEFETECKILKELLKDIELFENYEDFKNELLSKSDL
                     KGKKFFMPLRIILTGNIHGPELSDLYPYIKNFIHELARI"
     gene            1359..1640
                     /locus_tag="ACHFOB_001289"
     CDS             1359..1640
                     /locus_tag="ACHFOB_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HFN5800076.1"
                     /translation="MVIDSFIISIFQVLQIVINIYTWIIIITALLSWVNPDPYNPIVQ
                     ILYKLSYPAYALVRKIPTRIGNIDLAPLIIVLALQFLGIFLGNILRSIL"
     gene            1637..3262
                     /locus_tag="ACHFOB_001290"
     CDS             1637..3262
                     /locus_tag="ACHFOB_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HFN5800077.1"
                     /translation="MIKKILVFLFIFSSLNATQYSIEKLKKEENSLAKDYYIYRLLEK
                     NKISKKDAQDLNSHIFRYIGKIKSELEKIIPLKPYINPKYAKCYTYTANTILDANLTC
                     QSVRLNSLVFIASLNSKDRTTLAQTFKNQRPDLTNLLLAFNTSDPMSYIVQKEDINGF
                     FKLYNYSKKYDLDLNTSLVNKLPNHIGFKDFAQNIIIKKENPKFRHSMLEINPENVSE
                     DSAFYLGVNALTYDKTELAYDFFKKAAQSFKSQSNKDNAIFWMWLIKNNEEDLKTLSQ
                     SSSLNIYSLYAKELTNTPFPKIESLNPSKKKNNFNMQDPFAWQKINKQIRDANASQLD
                     VLAKEFDTQETLPIYAYILERKNNFKKHYFIMPYYDNIKDYNKTRQALILAIARQESR
                     FIPTAISVSYALGMMQFMPFLANHIGEKELKIPNFDQDFMFKPEIAYYFGNYHLNYLE
                     SRLKSPLFVAYAYNGGIGFTNRMLARNDMFKTGKFEPFLSMELVPYQESRIYGKKVLA
                     NYIVYRDLLNDSIKISDIFENLIQNKANDLNKS"
     gene            complement(3159..3644)
                     /locus_tag="ACHFOB_001291"
     CDS             complement(3159..3644)
                     /locus_tag="ACHFOB_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800078.1"
                     /translation="MKIYSVILGAFLLGACSLKDQAIVDTNLKSQTLMFTQKYKITQD
                     KINAIITMSYLNPILDKTSKDDVLALSFTPNTLKIQNLEVFINNKKANIEKLDDEYLK
                     YIIQNNYTDYFKASLPSVKEETRLVAKICLDHLPCFELNFQKYPKSLYYRSEDLDTQY
                     N"
     gene            3740..4231
                     /gene="mobB"
                     /locus_tag="ACHFOB_001292"
     CDS             3740..4231
                     /gene="mobB"
                     /locus_tag="ACHFOB_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HFN5800079.1"
                     /translation="MKQLIMAFSGPSNSGKTTLITKIADNFLQQNLKVLIIKHDPADK
                     AQFDFNGKDSFKFFQSGAEVMVLSPTRTTFFSHENRDILKALKLAPNFDICLVEGLKT
                     LDLPRISVFCKEIDESYFTFSNAIASYEKISHPYLTWLDLNDIQAICRYILKNAKNLQ
                     GEL"
     gene            4233..5075
                     /gene="fbp"
                     /locus_tag="ACHFOB_001293"
     CDS             4233..5075
                     /gene="fbp"
                     /locus_tag="ACHFOB_001293"
                     /EC_number="3.1.3.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 fructose-bisphosphatase"
                     /protein_id="HFN5800080.1"
                     /translation="MQEVISYIQKAVLEISNALKFPDTGYSQNQNFTGDTQLKFDVLS
                     DEIITKTLSQCSSIKAIISEEKDEILTLNEKANFIVAYDPLDGSSLMDVNFAIGSIFA
                     IYEEKASAKNLRAALYSMYGARLELVICKDQPKLYRLNANNEFIFIKDLKMNEKGKIN
                     ATGGTQKFWEEKHAKFIKSLFDEGYRLRYSGAMVSDINQILLKGGGIFSYPATQDAPN
                     GKLRAFFEVFPLAFIIEKAGGKTTNGKNHSLLELEFDKIHATTPCFFGSEYEISKLLK
                     AYNE"
     gene            5068..5265
                     /locus_tag="ACHFOB_001294"
     CDS             5068..5265
                     /locus_tag="ACHFOB_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800081.1"
                     /translation="MSDIRDEFEQDMDKKKEILLSCQNSKNLNSCYNCDEIFNCQTRK
                     NYVDAVYNSMSKGKTEGGFDF"
     gene            5275..7161
                     /gene="metG"
                     /locus_tag="ACHFOB_001295"
     CDS             5275..7161
                     /gene="metG"
                     /locus_tag="ACHFOB_001295"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HFN5800082.1"
                     /translation="MRYITTPIYYVNDVPHLGHAYTTIIADTLARFYRLQGHETRFLT
                     GTDEHGQKIEEAAKLRNSTPQEYADKISFEFKKLWDDFEITYDIYARTTDTRHIEFVK
                     AMFLKMWQKGDIYKDEYEGHYCISCESFFTQSQLINDCSCPDCGKQTRILKEESYFFK
                     LSKYQDKILQWYEEKDPILPKNKKNELINFVQSGLKDLSITRTSFDWGIKLPQEINDD
                     KHIIYVWLDALFIYISSLDFQSKGENAKFWPAHVHLVGKDILRFHAIYWPAFLMSVDL
                     PLPEFIGAHGWWTKEGEKMSKSKGNVVKPKEVVDAYGSEAFRYFLLREVPFGNDGDFS
                     ENMLINRINAELSNEFGNLLNRIIGMSTKYSQGNISKEGVLKFYNVELNQAKEHLNLA
                     VEFLENLQCNRYLEELFKALSVANLAISKYEPWNLIKENKHEQANALVALCANILAKT
                     SLLLSPTLPKSCQKVALALNFEISSTNYAKIILDNELLDFKANPCEALFPKVEKALLK
                     QEIKEEPKKEKSPKIKIDDFAKIEIKVAKVLDCQNIKGSEKLLKFQLELDDKEIRQVL
                     SGIAKHYKASDLIGKQVCIISNLKKAKIFGHESDGMILSAKSGDKLVLITPEQLVQNG
                     SLVG"
     gene            7165..>7709
                     /locus_tag="ACHFOB_001296"
     CDS             7165..>7709
                     /locus_tag="ACHFOB_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800083.1"
                     /translation="MQISNLGELLNATLIHEGSVLSVEGFAINLNELKAGFAFFNNNK
                     KEITQAVKKGAYAIITENDITIEDKDIFYFRVENLEQALVRFLRFFCEDKECEFLLFK
                     SYELSLCKAFYFNILKGNIFADFEKLIKAKKGEIFCYCEENYLNKLCAYSHSLKDANF
                     TLLSRSSFFFTTLICENLYFK"
BASE COUNT         2894 a         1124 c         1170 g         2521 t
ORIGIN      
        1 aaatatccgt ataaattttt ctgttataat aagcttttaa ataattttaa aggctataaa
       61 atgtaccgtt ttgcaccttc tcccacaggt gatatgcaca taggaaattt acgcgcagca
      121 atttttaatt atatctgtgc aagacaaaaa aatatggatt ttattttacg tattgaagat
      181 actgataaag ctagaaatat agcaggaaaa gaagaagaaa tcaaagaaat tttaaatctt
      241 tttggtattt catggcagca ttactatata caaagtgaaa atttaaaatt ccatcgccaa
      301 atggctttaa aacttgtaag cgaaaaaaaa gcttttgctt gtttttgcac cgaagaagaa
      361 cttgaagcaa aaaaagagtt agctaaaaaa caaggtaaag cttatcgcta cgatggcact
      421 tgtgaaaaac tagccgatat tgatgtttta gaatgtgaaa aaccctttgt tatccgtctt
      481 aaaaaaccta ctcatactat gaaatttact gattttatca aaggcgagct tagttttgaa
      541 cctgaaaaca tagactcttt tgtaattatg agaacagata aaactccaac ttataatttt
      601 gcttgtgcgg ttgatgatat gcttgaaaat gtcacttgta ttatacgcgg agaagatcat
      661 gtttcaaaca ctccaaaaca agaacatatc cgcgcaagct taggttataa taaagccatg
      721 acttatgcac acttacctat cattttaaac gaagaaggtg ttaaaatgag taaaagagaa
      781 gcacattctt ctgtaaaatg gctacttgaa agtggaattt tacctagcgc aatcgcaaat
      841 tatctgatca tgctaggcaa taaaactcct tgtgaaattt ttaccttaga agaggctata
      901 aaatggtttg atatttctaa agtttcaaaa gctcccgcaa gatttgatct taaaaaactt
      961 ttgcaaatca atcgcgaaca tatcaaaatg atcaaagatg atgagcttaa taaaatttta
     1021 gatttaaaca aagatcttgc acaacttgct aaattttaca ctcaagaagc aagcaccata
     1081 aaagaactta aagaaaaaat gcgagctatt ttcaacacaa aagactttgg agagtttgaa
     1141 acagaatgta aaattttaaa agaactctta aaagatattg aactttttga aaactatgaa
     1201 gattttaaaa atgaactttt aagcaaaagc gacttaaaag gtaaaaaatt tttcatgcct
     1261 ttaaggataa ttttaacagg aaatatccac ggacctgagc ttagtgatct ttatccttat
     1321 attaaaaatt ttattcacga attagcaagg atttaactat ggttatagac tcttttatta
     1381 tttctatttt tcaagtacta caaattgtca ttaacattta tacttggatt attatcatca
     1441 cagcactttt aagctgggta aaccctgatc cttataatcc catagtgcaa attttatata
     1501 aattaagtta tcctgcttac gccttagtta gaaaaattcc aacacgcatt ggtaatattg
     1561 atcttgcacc tttgattata gtcttagcat tgcagtttct tggtattttt cttgggaata
     1621 tcttaaggag tatattgtga taaaaaaaat actcgttttt ttatttattt tttcaagttt
     1681 aaatgctaca caatatagta tagaaaaact caaaaaggaa gaaaattcgc ttgctaagga
     1741 ttattatatt tataggcttt tagaaaaaaa taaaatcagt aaaaaagatg cacaggattt
     1801 aaattctcat atttttcgct atataggaaa aattaaatcc gaacttgaaa aaatcatccc
     1861 tttaaagcct tatatcaacc caaaatatgc taaatgctat acctatacag caaatactat
     1921 cttagatgca aatttaactt gtcaaagtgt gcgcttaaat tcattagttt ttatagcgag
     1981 tttaaattcc aaagaccgaa cgactttagc tcaaaccttt aaaaatcaaa gacctgattt
     2041 gacaaattta ttactagctt ttaatacttc tgatcctatg agctatatag tacaaaaaga
     2101 agatattaat ggttttttta aactttataa ttattctaaa aaatacgact tagatttaaa
     2161 tacaagttta gtcaataaat taccaaacca cattggtttt aaagattttg cacaaaatat
     2221 tattattaaa aaagaaaatc caaaatttag acattctatg ctagaaataa atcctgaaaa
     2281 tgtaagtgaa gattctgctt tctatttagg agtcaatgcc ttaacttatg ataaaacaga
     2341 gcttgcttat gactttttta aaaaggcagc acaaagtttt aaatcgcaaa gcaataaaga
     2401 caatgctata ttttggatgt ggttgattaa aaacaatgaa gaagatttaa aaactttatc
     2461 acaaagttct tctttaaata tttatagtct ttacgcaaaa gaacttacta acacaccttt
     2521 tccaaagata gaaagcctta atccaagcaa gaaaaaaaat aattttaaca tgcaagatcc
     2581 ttttgcttgg caaaaaataa acaaacaaat tcgcgatgct aacgcaagtc aactagatgt
     2641 cttggcaaaa gaatttgaca cacaagaaac cttgcctatt tatgcttaca tattagaacg
     2701 caaaaataat tttaaaaaac attattttat aatgccttat tatgacaata taaaagacta
     2761 taacaaaaca agacaagctt taattttggc tattgccaga caagaaagtc gttttattcc
     2821 aactgctatt tcagtttctt atgctttagg catgatgcaa tttatgccat ttttagccaa
     2881 tcacataggg gaaaaagaat taaaaattcc aaatttcgat caagatttta tgtttaaacc
     2941 tgaaatagca tattactttg gaaactatca tctaaattac cttgaatcac gtttaaaatc
     3001 tccacttttt gtcgcttatg cttataatgg cggtatagga tttactaacc gtatgcttgc
     3061 aagaaatgat atgtttaaga caggcaaatt tgaacctttc ttgtctatgg agctagttcc
     3121 ttatcaagaa agccgaattt acggaaaaaa agttctagct aattatattg tgtatcgaga
     3181 tcttctgaac gatagtataa agatttcgga tatttttgaa aatttaattc aaaacaaggc
     3241 aaatgatcta aacaaatctt agctacaagc ctagtctctt ccttgacact aggaagagat
     3301 gctttaaaat aatcagtata gttgttttgt attatatatt ttaagtactc atcatccagt
     3361 ttttcaatat tggctttttt attattgata aaaacttcta aattttgaat ttttaatgta
     3421 tttggagtaa aagacaaggc caatacatca tctttacttg tcttatctag aattgggttt
     3481 aaataagaca tggttataat ggcattaatc ttatcttgtg tgattttgta tttttgagta
     3541 aacattaaag tttgagattt taaatttgta tccacaatcg cctgatcttt taaagaacaa
     3601 gctccaagca aaaaagcacc taaaattaca ctataaattt tcattctttt tccatatttt
     3661 ttagtattat tgtagccttt taaccctatt ttttggttta aaaagatata attttacaaa
     3721 aaaattaaga gtatatttta tgaaacaact tatcatggct tttagcggcc cgtcaaattc
     3781 aggtaaaact acacttatta ccaaaatagc tgataatttt ttgcaacaaa atttaaaagt
     3841 tttaatcatt aaacacgatc ctgctgataa agctcaattt gattttaacg gtaaagatag
     3901 ttttaaattt ttccaaagcg gagctgaagt catggtttta agccctacaa gaacaacttt
     3961 tttttctcat gaaaatagag atattttaaa agctttaaaa ttagcaccca attttgacat
     4021 ttgtttggtt gaaggattaa aaactcttga tttaccacgc attagcgtat tttgtaaaga
     4081 aattgatgaa agttatttta ctttttcaaa cgctattgca agctatgaaa aaatttctca
     4141 cccttatctt acttggcttg atttaaacga tatacaagct atttgtcgat acatacttaa
     4201 aaatgctaaa aatttacaag gagaattata aaatgcaaga agtgatttct tatatacaaa
     4261 aagcggtttt agaaatttct aacgctttaa aatttcccga tacaggctac agtcaaaatc
     4321 aaaattttac aggcgatacc caactcaaat ttgatgtttt aagcgatgaa atcatcacaa
     4381 aaactctaag tcaatgttca agcattaaag ccatcataag tgaagaaaaa gacgaaattt
     4441 taacgcttaa tgaaaaagca aattttatcg tagcttatga tcctttagat ggttctagct
     4501 taatggatgt taattttgcc ataggttcta tttttgccat ctatgaagaa aaagcaagtg
     4561 ctaaaaattt aagagctgca ctttatagta tgtatggagc gcgcttagaa cttgtgattt
     4621 gcaaagatca gccaaaactt tatcgcttaa atgcaaataa tgaatttatt tttataaaag
     4681 atcttaaaat gaatgaaaaa ggcaagatta atgctacagg cggaacgcaa aaattttggg
     4741 aagaaaaaca cgccaaattt atcaaaagtc tttttgatga aggctatcgc ttaagatatt
     4801 ctggagccat ggtaagcgat atcaatcaaa ttttattaaa agggggtggc atttttagct
     4861 atcctgcaac acaagatgcg cctaatggca aacttcgtgc cttttttgaa gtctttcctc
     4921 tagcctttat catagaaaaa gcaggcggaa aaactacaaa tggaaaaaac cactccttac
     4981 ttgaacttga atttgataaa atccatgcga caactccttg tttttttggc tcagaatatg
     5041 aaatttcaaa acttttaaag gcttataatg agtgatatta gagatgaatt tgagcaagat
     5101 atggataaaa aaaaagaaat tttactttca tgtcaaaact caaaaaacct aaactcttgt
     5161 tataattgcg atgaaatttt taactgccaa actagaaaaa attatgttga tgcagtctat
     5221 aacagtatgt ctaagggtaa aaccgaaggc ggatttgact tttaaaggaa aaaaatgcgt
     5281 tatattacaa caccaattta ttatgtaaat gatgtgcctc atttaggtca tgcttatact
     5341 accatcatag ccgatacttt agcaagattt tatcgtttac aaggacatga aacaagattt
     5401 ctaacaggaa cagatgagca tggacaaaaa atcgaagaag ctgccaaact aagaaattcc
     5461 actcctcaag aatatgccga taaaatcagt tttgaattta aaaaattatg ggatgatttt
     5521 gaaatcacct atgatattta cgcaagaaca actgatacaa ggcatattga atttgttaaa
     5581 gctatgtttt taaaaatgtg gcaaaaaggc gatatttata aagatgaata cgaaggacat
     5641 tattgtatct cttgcgaaag cttttttact caaagtcagc ttatcaatga ttgttcttgt
     5701 ccagattgtg gcaaacaaac tagaatttta aaagaagaaa gctatttttt caaactttca
     5761 aaatatcaag ataaaatttt acaatggtat gaagaaaaag atcccatctt gccaaaaaac
     5821 aaaaaaaacg aacttataaa ttttgtccaa agtggcctta aagatctttc cattacaaga
     5881 accagttttg attgggggat taaactgcct caagaaatta atgatgataa acatattatt
     5941 tatgtatggc ttgatgcact ttttatctat ataagttcgc ttgattttca aagtaaggga
     6001 gaaaatgcta aattttggcc tgcgcatgtg catttagtag gaaaggatat cttgcgtttt
     6061 catgcgattt attggccagc ttttttaatg agcgtagatt tacctttgcc agaatttata
     6121 ggcgcacatg gctggtggac taaagaaggt gaaaaaatga gcaaatctaa aggcaatgtt
     6181 gtaaaaccta aagaagtggt tgatgcctat ggaagcgaag cttttagata tttcttgctt
     6241 agagaagtgc cttttggcaa tgatggggat tttagcgaaa atatgctgat aaatcgtatc
     6301 aatgctgaac taagcaatga atttgggaat ttacttaatc gcattatagg tatgagtaca
     6361 aaatattctc aaggaaatat ttcaaaagaa ggtgttttaa aattttacaa tgttgaatta
     6421 aatcaagcaa aagaacactt aaatttagcg gtagaatttt tagaaaactt acagtgtaat
     6481 cgttatttag aagaactttt taaagcctta agtgtggcaa atttagctat tagcaaatac
     6541 gaaccttgga atttaatcaa agaaaacaaa cacgaacaag ctaatgcttt agtagcactt
     6601 tgtgcaaata ttttagccaa aacaagcctt ttattaagcc ctactctacc aaagtcttgt
     6661 caaaaggtgg ccttagcttt aaattttgaa atttcatcta caaattacgc aaaaataata
     6721 cttgataatg aacttttaga ttttaaagca aatccttgcg aagctttatt tccaaaagta
     6781 gaaaaagctc ttttaaaaca agaaattaaa gaagaaccta aaaaagaaaa aagtcctaaa
     6841 ataaaaatcg atgattttgc aaaaattgaa atcaaagtcg ctaaggtgct tgattgtcaa
     6901 aatataaaag gaagcgaaaa acttttgaaa tttcaactcg aacttgacga taaagaaatc
     6961 cgtcaagtac tctcaggcat agcaaaacac tataaagcca gtgatttaat cggtaaacaa
     7021 gtttgcatta taagcaatct taaaaaagct aaaatttttg gacatgaaag cgatggtatg
     7081 atactttctg caaaaagcgg agataagctt gttttaatca cccctgaaca acttgtgcaa
     7141 aacggttctt tagtaggcta aaatatgcaa attagcaatt taggtgaact tttaaacgca
     7201 acgctcattc atgaaggtag cgttttaagc gtggaaggtt ttgccataaa tttaaacgaa
     7261 cttaaagcag gctttgcctt ctttaataac aataaaaaag aaattaccca agctgtaaaa
     7321 aaaggcgctt atgctataat tacagaaaat gacattacta ttgaagataa agatattttt
     7381 tactttagag tagaaaatct agaacaagct cttgtaagat ttttacgctt tttttgtgaa
     7441 gataaagaat gtgaattttt gctttttaaa tcttacgaac taagtctttg caaggctttt
     7501 tattttaaca ttttaaaagg aaatattttt gctgattttg aaaaactaat caaagcaaaa
     7561 aagggtgaaa ttttttgcta ctgtgaagaa aattacttaa ataaactttg tgcctattct
     7621 catagtctaa aagatgctaa ttttacctta ttatcgcgat ctagcttctt ttttacaact
     7681 ttgatttgtg aaaatttata ttttaaaaa
//
LOCUS       DAZBIH010000073         7518 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.074, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000073 DAZBIH010000000
VERSION     DAZBIH010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7518
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.074"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1506)
                     /locus_tag="ACHFOB_001297"
     CDS             complement(<1..1506)
                     /locus_tag="ACHFOB_001297"
                     /inference="COORDINATES: protein motif:HMM:NF015210.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HFN5800084.1"
                     /translation="MIKKVKEVLNNSIFFIPNYQRDYAWEEKNLDDLWEDLLEAEQAV
                     SDQMGHFLGTIVVSKNSKNPEIYDIIDGQQRITTIFMLRYALNFRTQNSQRNIVYFCD
                     DNDNFRLQVQDENKLFFNEVLKQAENNKINIELENKAQTQGQQKLYKVFKAIWSYVAS
                     LESDKALKLFNIIGNMSIMWLEEQDSGKAIRMFQTVNDRGIPLLILDKLKSLLILYSN
                     KYCKGELDEVINERFGKIFKISMNIKKHKTIHSLGDVQFYQELEARIFNYHSLGVKEI
                     AHYRNSANIHYNELKRVLKNKDKTKEEFKKWLDDYSKDLLQFFETFLKILEKTQDNIE
                     MFKIFMILKINPYFYSSLIRLEMNNILDDECLRLFSQAEIIFYSFGQTNDSTAFKLGE
                     VTESKDEFKNRIIDDCNKCIKRAGYYDINEFISEISEDNYEWGKYFHYLFLTYNNVGI
                     EECMKLIDEKIYAFTIEHIIPQNIINNGLLKNYKFENEDDFNKLKNTFGNLI"
     gene            complement(1526..6013)
                     /gene="gltB"
                     /locus_tag="ACHFOB_001298"
     CDS             complement(1526..6013)
                     /gene="gltB"
                     /locus_tag="ACHFOB_001298"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002934810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0015930 - glutamate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006537 - glutamate biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HFN5800085.1"
                     /translation="MDLENILENNQSIGLYHPKNEHDACGIAAVANIRGIASYKVICD
                     ALEILMNLEHRGGAGAEENSGDGAGILIQIPHDFFKTQELGFELPKKGDYAVAQMFLS
                     PNTDAKEEAKEIFLQGLKDKKLEFLGFREVPFNPSDIGASALKAMPYFLQAFVKKPSK
                     ISAGLEFERVLYSTRRLIEKRAINVPKFYFSSFSSRTIVYKGMLLSTQLSDFYLDFKD
                     VNMKSAIALVHSRFSTNTFPSWERAHPNRYMVHNGEINTIRGNVDSIRAREGLMQSEY
                     FENLDEIFPIIAKLSSDSAMFDNTLEFLALNGRTLEEAFMMMVPEPWHKNENMESKKR
                     AFYEYHSLLMEPWDGPAAIVFTDGVIMGASLDRNGFRPSRYYLTKDDMLILSSETGAL
                     KLDEKNIKAKKRLEPGKLLLVDTARGRVIADNEIKEHYANAKPYKKWLKNLVELEKQK
                     SGVYKHQFLKEDEVLKLQKAFGWSYDELKMSVAAMAQNGKEAIAAMGVDTPLAILSKT
                     YQPLYNYFKQLFAQVTNPPLDAIREEIVTSTRIYLGSEGNLLKPDENNAKRVKIALPV
                     ISNEELFEVKALNKFQVKEFSILYDYSKKTLEKALDELCVKIEDEVKKGVSIIILSDK
                     GVDEKNAYIPALLAVSGVHNHLVRKNLRTHTSLIIESGEPREIHHFACLLGYGATVIN
                     PYLVYESIQKLIANKDLNLSYEKAVENFIKASSSGIVKIASKMGVSTLQSYNGSALFE
                     CLGLSSKVIDKYFTSTTSRIEGMDLEDFEKELIALHKHAFNDTHKALDSKGIHGFRSA
                     KEEHLIDPLVIFNLQQACRNKDYKSFKKYSALVDEKQVNLRSLMEFDFSEAISIDKVE
                     SVESIVKRFRTGAMSYGSISKEAHECLAQAMNKIGAKSNSGEGGEDEERYEIKEGVDK
                     NSAIKQVASGRFGVDLNYLSHAKEIQIKVAQGAKPGEGGQLMGFKVYPWIAKARHSTA
                     GVTLISPPPHHDIYSIEDLAQLIYDLKHANKDAKISVKLVSENGIGTVAAGVAKAGAN
                     LILVSGYDGGTGASPRTSIPHAGIPWELGLAETHQTLILNKLRDRVRLETDGKLMNGR
                     DLAIAALLGAEEFGFATAPLIVLGCTMMRVCHLNTCPFGIATQDTELRDRFKGKVDDV
                     INFMYFIAEELREYMARLGFERLDDMIGRVDKLRQKSVQGKAGKLNLDKILKSLPTYN
                     RTAVHFKDYKDNKLEKTIDYRILLPLCKNAVEKKEPIKLSLEVGNQSRTFATMLSSEI
                     LKTYGKDALDEDSIHIKAIGNAGNSFGAFLLKGIKLEIIGDSNDYLGKGLSGGKIIAK
                     ISNEATFSPEENIIAGNACLYGATKGEVYLDGIAGERFCVRNSGALAVVLGTGVHGCE
                     YMTGGQVVVLGDVGANFAAGMSGGVVYIFGRHNEAHVNTELVDIKDLNAKDEKELKAV
                     IEKHITYTDSKKAKDILEKFDKKDFFKVTPRDYEKMLKMLDLCKNEKDPNLAAFLKIT
                     Q"
     gene            complement(6147..7454)
                     /locus_tag="ACHFOB_001299"
     CDS             complement(6147..7454)
                     /locus_tag="ACHFOB_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter family protein"
                     /protein_id="HFN5800086.1"
                     /translation="MILTLLTNPIIISVVLMTLLCLFRFNVLLSLLISALIAGVFSHL
                     ELVDTMNILISGMKENLKTALSYILLGAIAAAISKTNLTAYLIKIVSHFISHKKYLLL
                     LSIALISCFSQNLIPIHVAFIPLLIPPLLSLFNKLKIDRRAVACALTFGLTTPYMVLP
                     VGFGLTFQDLLKDNLNANNVSASLNDVTNTMYFAAICMIAGLFLALFVFYRKPREYQE
                     VEIAKVDLENLEMTRKEWGVLAGLVLTLILQILTMNLPLSGLLGFVLMVILGGVEFSK
                     VNEVFDDGLKMMGFIAFVILVAAGYGEVLKESGSVVDLVNSVVPWMEQSKFLAVFFML
                     LIGLIITMGIGTSFGTIPIIATLFCPICLELGFSTALIIFILGVAGALGDAGSPASET
                     TMGTTVGLNADKQHDHIKDTCIPTFIFYNGPLLILGSIIAMFL"
BASE COUNT         2526 a         1431 c          935 g         2626 t
ORIGIN      
        1 aattaaattt ccaaaagtat ttttcagttt attaaaatca tcttcgtttt caaatttata
       61 attttttaat agaccattat ttattatatt ttgaggtata atatgttcaa tagtaaaagc
      121 ataaattttt tcatctatta atttcataca ctcttcaatt ccaacattat tatatgttaa
      181 aaataaatag tgaaaatatt taccccattc ataattatct tcactaattt cacttataaa
      241 ttcatttata tcataataac ctgctctttt tatacattta ttacaatcat caataattct
      301 atttttaaat tcatcttttg attctgttac ctcgccaagt ttaaaagcag tagaatcatt
      361 agtttgtcca aaggaataaa atataatttc tgcttgtgaa aaaagtctta aacattcatc
      421 atctaatata ttattcattt ccaatctaat aagagaagaa taaaaataag gattaatttt
      481 tagtatcata aaaattttaa acatctcaat attatcttgt gtcttttcaa gaatttttaa
      541 aaaagtttca aaaaattgca ataagtcttt ggaataatcg tctaaccatt ttttaaattc
      601 ttctttagtt ttatctttat ttttcaacac tctctttaat tcattataat gtatattggc
      661 actatttcta taatgtgcaa tttctttcac tcctaaggaa tgataattaa aaattcttgc
      721 ctctaattct tgataaaatt gaacatcacc taaagagtga atagtcttat gctttttaat
      781 attcatgcta atcttaaaaa tttttccaaa tctttcatta ataacctcat ctaattcccc
      841 tttacaatac ttatttgaat ataaaatcaa taaagatttt aatttgtcta aaattaaaag
      901 tgggatacct ctatcattaa ctgtttgaaa cattctaata gcttttccag agtcttgctc
      961 ttctagccac attatagaca tatttccaat gatattaaat aattttaaag ctttatcaga
     1021 ttccaaactt gcaacataac tccaaattgc tttaaagact ttataaagtt tttgctgtcc
     1081 ttgtgtttgt gccttgtttt ctaactctat attaatttta ttattttctg cttgttttag
     1141 aacttcatta aaaaacaatt tattttcatc ttgaacttga agtctaaaat tatcattatc
     1201 atcacaaaaa tatacaatat ttctttgaga attttgcgtt ctaaaattta aagcataccg
     1261 taacataaaa attgttgtaa ttctttgttg cccatctata atatcataga tttctggatt
     1321 tttagaattc ttagatacaa ctatagttcc taaaaaatga cccatttgat cacttactgc
     1381 ttgttcagcc tctaataaat cttcccacaa atcatctaaa tttttttctt cccaagcata
     1441 atctctttga taatttggta taaaaaaaat tgaattattt aacacttctt ttactttttt
     1501 tatcattatt tctcctttta aaaatttatt gtgtgatttt caaaaatgct gctaaatttg
     1561 gatctttttc atttttacaa agatcaagca tttttaacat cttttcataa tctcttggcg
     1621 tgactttaaa aaagtctttt ttatcgaatt tttctaaaat atctttagcc tttttagaat
     1681 ctgtataagt gatatgtttt tctatcacag cttttaattc tttttcatcc ttagcattaa
     1741 gatctttaat atccacaagc tcggtattta catgagcttc attgtgtctt ccaaagatat
     1801 aaacaacgcc cccactcata ccagcagcga aattcgcacc cacatctcca agaactacaa
     1861 cttgtccacc tgtcatatat tcacaaccat gcacgcctgt tcctaaaacc acagccaaag
     1921 cccctgaatt tcttacacaa aatctttccc ctgctatacc atctaaatac acttcacctt
     1981 ttgtagctcc gtataaacaa gcatttcctg cgatgatatt ttcttcaggt gaaaaagtgg
     2041 cttcatttga aatttttgct atgattttac caccacttaa acccttgcct aaataatcat
     2101 tgctatcgcc tataatctca agtttaatac cctttaacaa aaacgctcca aagctattgc
     2161 ctgcattgcc tatagctttg atatggatac tatcttcatc taaagcatct tttccataag
     2221 tttttaaaat ttcacttgaa agcatagttg caaaagtacg actttgattt cctacttcta
     2281 aagaaagttt gataggctct tttttctcca cagcattttt acaaagtggt agtaaaattc
     2341 tataatcaat cgttttttca agtttattgt ctttataatc tttaaaatgc acagcggttc
     2401 tattataagt aggcaaggat tttaaaattt tatctaaatt tagctttcct gctttacctt
     2461 gcacactttt ttggcggagt ttatccacgc gacctatcat atcatctagg cgttcaaaac
     2521 caagccttgc catgtattct ctaagctcct cagctataaa atacatgaaa ttaatcacat
     2581 catctacttt gcctttgaaa cgatctctaa gttctgtatc ttgagtggct ataccaaaag
     2641 gacaggtatt tagatgacaa actctcatca ttgtacaacc taaaacaatc aaaggcgcgg
     2701 ttgcaaaacc aaattcttca gctcctaaaa gtgctgctat ggctaaatca cgcccattca
     2761 taagctttcc atcagtttct aatcttaccc tatctctaag cttatttaag atcaaagttt
     2821 gatgcgtttc agctaagcct aactcccaag gaattccagc atgcggtata gaagttctag
     2881 gacttgcacc cgtacctcca tcataacctg aaacaaggat taaattcgca cctgccttag
     2941 ccacacctgc agcaaccgtt cctatgccat tttcgcttac aagttttact gaaattttag
     3001 cgtctttgtt cgcatgtttt aaatcataaa tgagttgagc caaatcctca atagaataaa
     3061 tatcatgatg aggaggtgga gaaatcagcg tcacacctgc agtagaatgt ctagccttag
     3121 ctatccaagg atagacttta aagcccatta attgtccgcc ctcacctggt tttgcacctt
     3181 gagcgacttt gatttgaatt tcttttgcat gacttaagta gtttaaatcc acgccaaaac
     3241 gcccacttgc tacttgctta atggctgagt ttttatccac accctctttg atttcatagc
     3301 gttcttcatc ctcaccacct tcacctgaat ttgatttagc acctatttta ttcatagcct
     3361 gtgctaaaca ctcgtgtgct tctttagaaa tagaaccata actcatcgcc cctgttctaa
     3421 agcgtttaac tatactttct acactttcaa ccttatctat actgatagct tcactaaaat
     3481 caaattccat caaagaacgc aaattaactt gtttttcatc tactaaagcc gagtattttt
     3541 taaagctttt atagtctttg ttgcgacagg cttgctgaag attaaaaatc acaagcggat
     3601 cgattaaatg ttcttcttta gcacttctaa aaccatgaat tcctttagaa tctaaagcct
     3661 tatgtgtatc gttaaaagca tgtttgtgta aagcaatgag ttctttttca aaatcttcta
     3721 aatccatacc ttcaatgcgt gaagttgtag aagtgaagta tttatcaatc accttagagc
     3781 ttaagcccag acattcaaaa agtgcagagc cattataact ttgcaaggta gaaaccccca
     3841 ttttagaagc aattttgact ataccacttg aacttgcctt gatgaaattt tctaccgcct
     3901 tttcataact taaatttaaa tctttattgg caatgagttt ttgtatactc tcataaacca
     3961 aataaggatt aataacagtc gcaccataac ctaaaagaca tgcaaaatga tgaatttctc
     4021 taggttcacc actttcgatg ataagacttg tatgtgttct taaatttttt cttactagat
     4081 gattatgcac tccagaaaca gcaagcaaag cagggatata agcgtttttt tcatccactc
     4141 ctttatcgct taaaatgata atagaaacac cttttttaac ctcatcttct atcttaacgc
     4201 aaagttcatc taaagccttt tctaaagttt ttttagaata atcataaagt atagaaaatt
     4261 ctttaacttg aaatttattt aaagccttaa cttcaaaaag ttcttcattg cttatcacag
     4321 gcaaggctat ttttacgcgt tttgcattgt tttcatcggg ttttaataaa ttgccttcgc
     4381 ttcctagata aatccttgta gaagtaacaa tctcttctct tatggcatca agaggaggat
     4441 tagttacttg tgcaaaaagt tgtttaaaat aattatacaa aggttgataa gttttagaaa
     4501 gtatagccaa aggagtatct acacccatag ctgctatagc ttctttacca ttttgagcca
     4561 tagcagccac gctcatttta agctcatcat aactccaacc aaaagctttt tgaagtttta
     4621 aaacctcatc ttcttttaaa aactgatgtt tataaactcc gcttttttgt ttttcaagtt
     4681 caactaaatt tttaagccat tttttataag gcttagcatt agcataatgc tctttgattt
     4741 cattatcagc tataacccta cctcttgctg tatcaacgag taaaagtttt ccaggttcta
     4801 agcgtttttt agctttgata tttttttcat caagttttaa agcccctgtt tcacttgaaa
     4861 gtatgagcat atcatctttt gtaagataat accttgaagg acgaaaacca tttctatcca
     4921 aactcgcccc cataatcact ccatcagtaa aaactatagc agcaggtcca tcccaaggct
     4981 ccatcaataa agaatgatat tcataaaaag cacgcttttt gctttccata ttttcatttt
     5041 tatgccaagg ttctggcacc atcatcataa aagcttcttc taaagtacga ccatttagag
     5101 ctaaaaattc taaagtatta tcaaacattg cagaatcact gctaagctta gctatgatag
     5161 gaaaaatttc atctaaattt tcaaaatact cactttgcat caagccttct ctagctctta
     5221 tgctatcaac atttccgcgt atggtattaa tctctccatt atgcaccata taacggtttg
     5281 gatgggctct ttcccaactt gggaaggtat tagtcgaaaa gcgagaatgc accaaagcga
     5341 tggctgattt catattgaca tctttaaaat caagataaaa atcgctcaat tgagttgaaa
     5401 gaagcattcc tttataaact atggtgcgtg aagaaaaact tgaaaaataa aattttggca
     5461 cattaatagc tcttttttct ataagtcgac gcgtactata aagcactctt tcaaactcaa
     5521 gtcctgcact tattttactt ggttttttta caaaggcttg taaaaaataa ggcatagctt
     5581 ttaaagcact tgcacctata tcgctaggat taaaaggcac ttctctaaaa cctaaaaatt
     5641 caagtttttt atcctttaaa ccttgtaaaa atatttcttt tgcttcttct tttgcatcag
     5701 tattgggtga taaaaacatc tgtgctacag cataatcacc ctttttagga agttcaaaac
     5761 ccaattcttg agttttaaaa aaatcatgtg gaatttggat taaaatcccc gccccatcac
     5821 ctgaattttc ttcagctcct gcaccacctc ggtgttcaag attcatcaaa atttctaaag
     5881 catcacaaat aaccttataa gaagcaatac cgcgtatatt agcaactgca gcgataccgc
     5941 aggcatcgtg ttcgttcttt gggtgatata aacctatgct ttgattattt tctaggatat
     6001 tttctaaatc cattttgctc tccttataag actgatttaa attttgttag ctttataagg
     6061 attatagcat acattttttt aaaatcgata taatttttat cttaaaaata aataaattaa
     6121 aaaatatttt gatagatttg caaaaattat aaaaacatgg cgataatact acccaaaatc
     6181 aataatggac cattataaaa aataaaagtt ggtatgcaag tatctttaat gtgatcgtgt
     6241 tgtttatcag catttaatcc tacagtagtt cccatggttg tttcactggc tggacttcct
     6301 gcatctccta aagctcctgc tactcctaag ataaatataa taagtgctgt actaaaacca
     6361 agttccaaac aaataggaca aaaaagcgta gctatgatag gtatagttcc aaaagaagta
     6421 cctataccca tagtgatgat aagtcctatt aaaagcatga aaaatactgc taaaaattta
     6481 ctttgctcca tccaaggaac gactgaattt acaagatcta ctactgatcc actttctttt
     6541 aaaacttctc catatcctgc agcaacaagg ataacaaaag ctataaaacc catcatttta
     6601 agcccatcat caaaaacttc attgactttt gaaaattcaa ctccacccaa aataaccatt
     6661 aaaacaaaac ccaaaagccc tgataaaggt aaattcatag tcaaaatttg caaaattaaa
     6721 gttaaaacaa gcccagctaa aacgccccat tccttacgcg tcatttcaag attttctaaa
     6781 tccactttag caatttctac ttcttgatac tctcttggct tacgataaaa cacaaaaagc
     6841 gctagaaaaa gtcctgctat catacaaata gcagcaaaat acatagtatt tgtaacatca
     6901 tttaaagatg cacttacatt atttgcattt aaattatctt ttaaaagatc ttgaaaagta
     6961 agcccaaaac ctactggcaa aaccatataa ggcgtagtaa gtccaaaagt taaagcacaa
     7021 gcaaccgctc tacgatcgat tttaagttta ttaaaaagac ttaaaagagg tggaatcaac
     7081 aaaggtataa aagctacatg aataggaatt aaattttgag aaaaacaaga aatcaaagct
     7141 atagacaaaa gcaataaata ttttttatga gatataaaat gacttactat cttaatcaaa
     7201 tatgcagtta aatttgtctt tgaaatcgct gcggcaatgg ctcctaagag tatatagcta
     7261 agagctgttt ttaaattttc tttcattccg cttataagta tattcatagt atctacgagt
     7321 tcaagatgag aaaatacacc tgcaataaga gctgagatca aaagactcaa aagcacatta
     7381 aaacgaaaca aacaaagtaa agtcatcaaa acaacactga taatgatagg attagtaagt
     7441 aaagtcaaaa tcattcctta aataatttta aaaatttaat tgtagaaaaa acttagttaa
     7501 aatgtaataa aactcgaa
//
LOCUS       DAZBIH010000074         7498 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.075, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000074 DAZBIH010000000
VERSION     DAZBIH010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.075"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            21..248
                     /gene="csrA"
                     /locus_tag="ACHFOB_001300"
     CDS             21..248
                     /gene="csrA"
                     /locus_tag="ACHFOB_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006109 - regulation of carbohydrate
                     metabolic process [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carbon storage regulator CsrA"
                     /protein_id="HFN5800087.1"
                     /translation="MLILSRKENESIIIGEGIEIKVVQTGKGYAKIGIEAPKSLMILR
                     KELVQQVKDENLHSVVQNDIKLDDLSKKLIK"
     gene            245..1012
                     /gene="ispE"
                     /locus_tag="ACHFOB_001301"
     CDS             245..1012
                     /gene="ispE"
                     /locus_tag="ACHFOB_001301"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0050515 - 4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase activity
                     [Evidence IEA];
                     GO_process: GO:0016114 - terpenoid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HFN5800088.1"
                     /translation="MKAYAKANIFLKLTGFDSRKYHLLESRFILLKDVFDELELVDKE
                     SDSKKEFEIISNFKCENNIIQKAYLLLSKRYNNELKELFSKKSLKLTKNIPVCAGLGG
                     GSSDCASFLLLMNETLNLKLNLQELINLSIQLGSDIAFFLSGFHSANVSGCGEIIEEF
                     EDDIPNLKWTFPQISCQTKAVYDEFDRGIFDFQKNNNQAQIYKKLSTKELLQNFKNKE
                     LNDLFTPCATLYPKMKSYLQEDFFLSGSGSSVFKVDR"
     gene            1009..1461
                     /gene="smpB"
                     /locus_tag="ACHFOB_001302"
     CDS             1009..1461
                     /gene="smpB"
                     /locus_tag="ACHFOB_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HFN5800089.1"
                     /translation="MKIIARNKKALFDYSIIERFEAGIVLKGSEVVALRAGRANLKDS
                     FVRIIKNEIFLLNSHISLLHTTHSFYKHEERGARKLLMHRKQIDKLLGKVSIEGYTIV
                     ALDLYFNTKNKVKATLALAKGKNLHDKRETLKKKQADLEARAAMKNYK"
     gene            1472..2074
                     /locus_tag="ACHFOB_001303"
     CDS             1472..2074
                     /locus_tag="ACHFOB_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA disulfide reductase family protein"
                     /protein_id="HFN5800090.1"
                     /translation="MKKILTLFLISLAFFLNACSKEEEIQNDFMFEEYHKGDKIVLNS
                     VNGGSKTLIRTDKGFVVEGEEGKVLMFDFFGTFCTPCKEEALDLSKLWKNNSSKFIII
                     GLTHFEDVSDETVKKFADDYGAYYFLSNGGSNDRIIAQILKDIDYQNMEQLPFKVVLK
                     NGIYQKISDYWNNNAPTNFYLGKIPTELMQEDLNKIYKGK"
     gene            2074..2364
                     /gene="clpS"
                     /locus_tag="ACHFOB_001304"
     CDS             2074..2364
                     /gene="clpS"
                     /locus_tag="ACHFOB_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease adaptor ClpS"
                     /protein_id="HFN5800091.1"
                     /translation="MPKTQTLEQTKLSEPKMYKVILLNDDVTTMDFVIEILMNIFHQN
                     LEKASQTMLEIHHNGSGICGIYTQEIALSKQKKVIDAAKLANFPLQAKVEEE"
     gene            2361..4490
                     /gene="clpA"
                     /locus_tag="ACHFOB_001305"
     CDS             2361..4490
                     /gene="clpA"
                     /locus_tag="ACHFOB_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5800092.1"
                     /translation="MKYQENLQKYLDNAKNLSLINHHEFVTCEHVLFALLKLSTDFKD
                     IFEEFSDGDLELLETELKNYISQNNQVIKQEIEPTISVVLDEILLSSKNKNNEIKIID
                     FLEKLIQDSRSYSSYLLKKHNINLNKIQELQNHENIQNLSNHTSDLTLLAQNGKIDPL
                     IGRKFELERMMQILSRRKKNNPILIGEAGVGKTAIVEGLALAIAKKKVPKNLQNAKIF
                     SLDMASILAGTKYRGDFEKRIKEILSELEKIPNAILFIDEIHTIVGAGSTGESHTDFS
                     NLLKPALSNGTLKCIGATTFMEYKNTFDKNKPLSRRFAKINVDEPSQEESLQILKGLK
                     NKYEEFHHIKLNDEILQYAVIWGKKFFNDKFLPDCAIDLIDELGASFALNPKAKKNVN
                     LKDLENVLAKMTHHHKMFEFDQNKALMNLKTNLKAKIFGQDEVIDSLVSSLKQSFAGF
                     KNSNTPRGVFLFTGSSGVGKTELCKSLAEFLGLNLERFDMSEYAEKHAISKLIGSPAG
                     YIGFEEGGLLSNAIRKNPFSLVLFDEIEKAHPDLSNTFLQIFDNAELTDNSGLKVDFK
                     NTIIIMTSNLGLKESNELGFLSKNEEKSNRAIKDFFAPEFINRIDKILHFNDLNDTIL
                     VKIIEKELDEISKNLNNIKLSVDDKAKIYLAKKAYNKEFGVRLLKRIISEEIGEKISD
                     EILFGKLKKGGIAKIKLGKNGKLEFIF"
     gene            4465..5112
                     /gene="aat"
                     /locus_tag="ACHFOB_001306"
     CDS             4465..5112
                     /gene="aat"
                     /locus_tag="ACHFOB_001306"
                     /EC_number="2.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008914 - leucyl-tRNA--protein transferase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucyl/phenylalanyl-tRNA--protein transferase"
                     /protein_id="HFN5800093.1"
                     /translation="MESSNLYSKLLNAPKNAPVFLSQNLEADFIVKAYTFGLFPWTSK
                     PVTWWCPDPRCILIPNQIHIQKNMKKFINLYQIKLDYDFLKLITLCRDTRSQSWIDDE
                     FITTYYKLFTQGYAHSLELYENNELIGGIYGLILGKVFFGESMVSIKKNASKVAMIKL
                     CDLLKPYDFIIDCQVYNQHLEFMGAHNISRKEFLNILKEKCNQESGFKNFKDLIT"
     gene            complement(5134..6423)
                     /gene="cetZ"
                     /locus_tag="ACHFOB_001307"
     CDS             complement(5134..6423)
                     /gene="cetZ"
                     /locus_tag="ACHFOB_001307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetZ"
                     /protein_id="HFN5800094.1"
                     /translation="MFGAKKNNTEIIEQLEKKCNGLGDILRSIGNTMAVIEFTTDGVI
                     LEANQNFLTTMKYSLSEIKGKHHSMFCLPEVVNSSAYSDFWKDLRDGKARSGLFRRIA
                     KGGIDVYLEANYLPISDNNGHVYKIIKFANDITQRHYEMLDLRNTIAAANRSMAIIEF
                     KPDGTIITANENFLRTMDFNIDEIKGKHHSMFCDSNYRHSKDYVQFWEDLREGKFQSG
                     KYIRYGRNNKKVYLEASYNPVKNDDGKIYKVIKFATDISEQVKKDQEKLCLISELAEK
                     NDNLTQDGDRVIENTVSNVQNIADMMSQSSNLVSSLNQQSDEIKSIIQTISDIADQTN
                     LLALNAAIEAARAGEHGRGFAVVADEVRNLAERTGHSVNEITTTINSIRNVTSQVVES
                     IKSGLEDVNQSVELAKEARECMEKIRESSAEVAKAMS"
     gene            complement(6505..7131)
                     /locus_tag="ACHFOB_001308"
     CDS             complement(6505..7131)
                     /locus_tag="ACHFOB_001308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HFN5800095.1"
                     /translation="MGSELYLMFFAAITLLAILNPFGNLTQFLAMSDGLPLMLRKKLF
                     RTILYTAFTIVLVFLLSGPLFMNYIFRVSLDDLRVSGGLVLIIMAIKNLLFSTKIATK
                     DFSSYQDMDDKEILRQSLIPMAFPMLVGPGTLASVIVIAEDGGLDVALGGVMIAFIFM
                     FILFHFAATIEKIVGKLILHVFSRIAQVFIAAMGFKMIIVGLKDIFNL"
     gene            complement(7146..>7498)
                     /locus_tag="ACHFOB_001309"
     CDS             complement(7146..>7498)
                     /locus_tag="ACHFOB_001309"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HFN5800096.1"
                     /translation="LNEEEKKVILNKGTEAPFSGKYNDFYEKGIYQCKQCGASLYKSE
                     DKFKSGCGWPSFDDEIKGAIKRIPDKDGIRTEIVCANCNGHLGHVFEGEGFSAKNVRH
                     CVNSISLEFVKTKD"
BASE COUNT         2879 a         1125 c         1063 g         2431 t
ORIGIN      
        1 cttctaaata aggttgaaaa atgttaatat tatcaagaaa agaaaatgaa agtataatta
       61 tcggagaagg tatagaaatc aaagtcgttc aaacagggaa aggatatgcc aaaataggca
      121 tagaagctcc aaaatccctt atgatactta gaaaagaact tgttcaacaa gtaaaggatg
      181 aaaatttgca ttctgttgtt cagaatgata ttaaacttga tgacttaagc aaaaaactaa
      241 tcaaatgaaa gcttacgcta aagcaaatat ttttttaaaa cttaccggtt ttgactcaag
      301 aaaatatcat cttttagaat cacgatttat acttttaaaa gatgtttttg atgagcttga
      361 gcttgttgat aaagaatcag actctaaaaa agaatttgaa atcattagta attttaaatg
      421 cgaaaataat attattcaaa aggcttattt gctactttct aaaagatata ataacgaatt
      481 aaaagaatta tttagcaaaa aaagcctaaa actcacaaaa aatatcccag tatgcgctgg
      541 acttggtggt ggaagtagcg attgtgcgag ttttttacta ctaatgaatg aaaccctaaa
      601 tttaaaatta aacctgcaag aacttataaa tttaagcata caactaggaa gtgatattgc
      661 ctttttttta agtggctttc actctgctaa tgtaagtggc tgtggtgaaa ttatagaaga
      721 atttgaagat gacataccta atttaaaatg gacttttcca caaatatctt gccaaactaa
      781 agctgtttat gatgaatttg atagaggaat atttgacttt caaaaaaaca ataatcaagc
      841 gcaaatctac aaaaaactca gcacaaaaga gttgttacaa aattttaaaa acaaagaatt
      901 aaatgattta tttactcctt gtgcaacttt atatcctaaa atgaagtctt acttacaaga
      961 agattttttt ctaagcggta gcggtagtag tgtttttaag gttgatcgat gaaaattatt
     1021 gcgagaaata aaaaagcttt atttgattat agcatcatag aacgctttga agccggaatt
     1081 gtccttaaag gaagtgaagt tgtagcctta agggcaggaa gagcaaatct taaagactct
     1141 tttgttcgca ttataaaaaa tgagattttt ttacttaatt ctcatatttc attgcttcat
     1201 actacacatt ctttctataa acacgaagaa agaggcgcta gaaagctttt aatgcataga
     1261 aagcaaattg ataaattatt aggtaaagta agtatagaag gatatactat cgttgcatta
     1321 gatctttatt ttaacacaaa aaataaagta aaagccactc ttgctttagc taaagggaaa
     1381 aatttgcacg acaagcgtga aactttaaag aaaaagcaag ccgatttaga agctagagct
     1441 gctatgaaaa attataaata aaggaaatta aatgaaaaaa attttaaccc tatttttaat
     1501 aagtttagca ttttttctta atgcttgctc caaagaagaa gaaattcaaa atgattttat
     1561 gtttgaagag tatcacaaag gagataaaat agtattaaat agtgtaaatg gtggaagcaa
     1621 aactttaata agaacagata aaggttttgt ggtagaagga gaggaaggaa aagttctaat
     1681 gtttgatttt tttggcactt tttgcacccc atgcaaagaa gaagctttag atcttagcaa
     1741 actttggaaa aataattcta gcaaatttat cattatagga cttacacatt ttgaagatgt
     1801 tagcgatgaa acagttaaaa aattcgcaga tgattatggt gcttactatt ttctaagcaa
     1861 tggcggttct aatgatcgta ttattgctca aattttaaaa gatatagact atcaaaatat
     1921 ggagcaactt ccttttaaag ttgttttaaa aaatggaatt tatcaaaaaa taagcgatta
     1981 ctggaataat aatgctccaa caaattttta tcttggcaaa attccaacag aactcatgca
     2041 agaagattta aataaaatct acaaaggaaa ataatgccaa aaacccagac tctagagcag
     2101 acaaaactta gtgaaccaaa aatgtataaa gttatactct taaatgatga tgtaacaacc
     2161 atggattttg tcatagaaat tttgatgaat atttttcatc aaaaccttga aaaagcaagt
     2221 caaacaatgt tagaaattca tcacaatggt tctggaattt gtggcattta cactcaagaa
     2281 atagctcttt caaaacaaaa aaaagttata gatgcggcta aacttgctaa ttttccacta
     2341 caagcaaagg tagaagaaga atgaaatacc aagaaaattt acaaaaatat cttgataatg
     2401 ccaaaaatct aagcttaata aaccaccatg aatttgttac ctgtgagcat gtactgtttg
     2461 cattactaaa actaagcact gattttaagg atatatttga agaattttca gatggagatc
     2521 ttgagcttct agaaaccgaa ttaaaaaatt acatttctca aaacaatcaa gttattaaac
     2581 aagaaataga acctacaata tctgttgttt tagatgaaat cttactttca tctaaaaata
     2641 aaaataatga aattaaaatt atagattttt tagaaaagct catacaggat tcaagaagtt
     2701 attctagcta tctcttaaaa aaacacaaca taaatcttaa caaaattcaa gaacttcaaa
     2761 atcatgaaaa tatacaaaat ttaagcaacc acacaagtga tttaacactt ttagctcaaa
     2821 atggcaagat tgatccttta ataggaagaa aatttgaact tgaaagaatg atgcaaattc
     2881 tttcacgtcg caagaaaaat aatcctattt taataggaga agcaggagtt ggcaaaacgg
     2941 ccattgtaga aggattagca ttggctattg cgaaaaaaaa ggtgcctaaa aacttacaaa
     3001 atgcaaaaat ttttagtctt gatatggcta gtatacttgc gggaacaaaa tatcgtggag
     3061 attttgagaa aagaattaaa gaaattttaa gtgaacttga gaaaataccc aatgctattt
     3121 tatttattga tgaaattcac actatagtag gagctggaag cacaggagaa tctcatactg
     3181 atttttccaa tcttttaaaa ccagctctaa gcaatggaac tttaaaatgc ataggtgcaa
     3241 caacttttat ggaatataaa aatacttttg ataaaaataa acccctaagt cgccgttttg
     3301 ctaaaataaa tgtagatgaa ccaagccaag aagaaagctt gcaaattctt aaaggattaa
     3361 aaaacaaata tgaagaattt catcatataa aattaaacga tgaaattctt caatatgctg
     3421 taatttgggg taaaaaattt tttaatgata aatttttacc tgattgtgct atagatctga
     3481 tcgatgaact tggcgcttct tttgctttaa atccaaaagc taaaaaaaat gtcaatttaa
     3541 aagatttaga aaatgtttta gcaaaaatga cccaccatca caaaatgttt gaatttgatc
     3601 aaaataaagc tttaatgaat ttaaaaacaa atttaaaagc aaaaattttt ggccaagatg
     3661 aagttataga tagtcttgtt tcatcactta agcaaagttt cgcgggattt aaaaattcca
     3721 atacaccacg cggagtgttt ttgtttaccg gatcaagtgg agttggaaaa acagaacttt
     3781 gcaaatcttt agctgaattt ttaggtttaa atttagaacg ctttgatatg agtgaatatg
     3841 cagaaaaaca tgctataagt aaactaatag gatctccagc tggatatata ggttttgaag
     3901 agggtggact tttaagcaat gctattcgca aaaatccttt cagtcttgtt ctttttgacg
     3961 aaatagaaaa ggctcatcct gatttaagca ataccttttt acagattttt gacaatgctg
     4021 aactcaccga caatagcggt cttaaagtag attttaaaaa tacaatcatt attatgacat
     4081 ctaatctagg acttaaagaa agcaatgagc ttggtttttt aagtaaaaat gaagaaaaaa
     4141 gtaatcgtgc tatcaaagat ttttttgctc cagaatttat taatcgcatt gataaaattt
     4201 tacattttaa tgatttaaac gatactatac ttgttaaaat tatcgaaaaa gaacttgatg
     4261 aaatttctaa aaatttaaat aatataaaat tatcagtgga tgataaagct aaaatttatt
     4321 tagctaaaaa agcctataat aaagaatttg gagtaaggct tttaaaacgc ataatttctg
     4381 aggagatagg agaaaaaatc agtgatgaaa ttttattcgg aaagcttaaa aaaggcggta
     4441 tagctaaaat caaacttggt aaaaatggaa agctcgaatt tatattctaa attactcaat
     4501 gcacctaaaa atgctcctgt atttttaagt caaaatttag aagctgattt tattgtaaaa
     4561 gcttatactt ttggtctatt cccatggaca agtaaacctg taacttggtg gtgtccagat
     4621 cctagatgca ttttaattcc aaatcaaatt cacatccaaa aaaatatgaa aaaatttatt
     4681 aatctctatc aaattaaact tgattatgat tttttaaaat taattacatt atgtcgcgat
     4741 acacgctctc aaagctggat agatgatgaa tttattacca cttattataa gttatttacc
     4801 caaggctatg cgcatagcct tgaactttat gaaaataatg aacttatagg tggaatttat
     4861 ggtttaattt taggcaaggt tttctttggt gaaagcatgg taagcattaa aaaaaatgca
     4921 tctaaagttg ccatgattaa actttgtgat ttattaaaac cttatgattt tatcatagat
     4981 tgtcaagttt ataaccaaca tttagaattt atgggtgctc ataatatttc taggaaagaa
     5041 tttttaaata ttttaaaaga aaaatgcaat caagaaagtg gttttaaaaa ttttaaagat
     5101 ttaattactt aaaaataagc gtgaaaatca cgcttatgac atcgctttag caacttcagc
     5161 agagctttca cgaattttct ccatacactc tcttgcttct tttgcaagtt caacactctg
     5221 attaacatcc tctaaaccgc ttttaatact ctcaaccact tgtgatgtaa cattacgaat
     5281 agaattaatc gtagtggtaa tttcattaac cgaatgccct gttctttcag ctaaatttct
     5341 tacttcatca gcaacaacag caaagcctct accatgttca ccagcacgtg ctgcctcaat
     5401 agcagcattt aaagcaagca gattagtttg atcagcgata tcactaatag tctgaataat
     5461 agatttaatt tcatctgatt gttgatttaa tgaggaaaca agatttgaac tttgagacat
     5521 catatcagca atattctgaa catttgaaac agtgttttca attacacgat ctccatcttg
     5581 agtaagatta tcattttttt ctgcaagttc gcttatgagg caaagttttt cttgatcttt
     5641 tttaacttgt tcgcttatat ctgtagcaaa tttaataacc ttgtaaattt ttccatcatc
     5701 atttttaacc ggattataac ttgcttcaag gtatactttt ttattatttc ttccgtatct
     5761 tatatattta cctgattgaa atttgccctc tcttaaatct tcccaaaatt gaacatagtc
     5821 cttagagtgt ctataattag aatcacagaa catgctatga tgctttcctt taatctcatc
     5881 aatattaaaa tccatagttc ttaaaaaatt ttcattagcc gtaataatag tcccatcagg
     5941 tttaaattca ataatagcca tagaacgatt agcggcagca atagtatttc taagatcaag
     6001 catttcataa tgtctttgag ttatatcatt ggcaaattta ataattttat aaacatgacc
     6061 attattatca ctaattggaa gataatttgc ttctaaataa acatctatcc ctcccttagc
     6121 tatacgtcta aaaagaccac ttctagcttt tccatctctt aaatctttcc aaaaatcact
     6181 atatgctgaa gaattaacaa cttcaggcaa acaaaacata ctatgatgct tacccttgat
     6241 ctctgaaaga gagtatttca tagttgttaa aaaattttga tttgcctcta aaataacgcc
     6301 atcggtagta aattcaatta ccgccatggt attcccaata gatcttaaaa tatctcctaa
     6361 accattacac tttttttcaa gttgttcaat tatttcagta ttatttttct tagcaccaaa
     6421 cataaaactc acctttttaa taataaatta ttttaaaatt atatcatatt tatatagtat
     6481 ttatttactt aaaattatat taatttataa gttaaatata tcctttaaac ctacaataat
     6541 catcttaaac cccatagcag caataaatac ttgtgctata cgagaaaaaa catgtaaaat
     6601 caattttcca actatttttt ctatagtagc tgcaaaatga aaaagtataa acataaaaat
     6661 aaaagctatc attactccgc caagagcaac atcaagccca ccatcttcgg ctataacgat
     6721 aacactagct aaagttccag gcccaacaag cataggaaat gccataggta ttaaactctg
     6781 tcttaaaatt tccttatcat ccatatcctg ataagaacta aaatccttag ttgcaatttt
     6841 tgttgaaaaa agtaaatttt taatagccat tataataaga accaaaccac cagaaaccct
     6901 taaatcatct aatgaaaccc taaaaatata gttcataaac aaaggtcctg ataataaaaa
     6961 taccaaaact atagtaaaag ctgtatagag aatagttcta aaaagttttt ttcgaagcat
     7021 taaaggcaat ccatcactca tagccaaaaa ttgagttaaa ttaccaaaag gatttaatat
     7081 ggcaagtaaa gtaattgcag caaaaaacat caaataaagc tcagaaccca tactagaaaa
     7141 cactatcaat ccttagtttt tacaaattcc aaagaaatag aatttacaca atgtcttaca
     7201 tttttagcag aaaatccttc tccttcaaaa acatgaccta aatgtccatt gcagtttgca
     7261 catacaatct cggttctaat cccatcttta tcaggaattc ttttgatagc cccttttatt
     7321 tcatcatcaa agctaggcca tccacaacct gatttaaatt tatcttcgga tttataaagc
     7381 gaagctccac attgcttgca ttgatagatt cctttttcat aaaaatcatt atatttccca
     7441 ctaaaaggag cttctgttcc tttatttaaa attacttttt tttcttcttc atttaact
//
LOCUS       DAZBIH010000075         7325 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.076, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000075 DAZBIH010000000
VERSION     DAZBIH010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7325)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7325)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7325
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.076"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..345
                     /locus_tag="ACHFOB_001310"
     CDS             <1..345
                     /locus_tag="ACHFOB_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002857273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite oxidase heme-binding subunit YedZ"
                     /protein_id="HFN5800097.1"
                     /translation="ILHFLNYFIFDRNAQILRLFDDISHRLLEASGFIAFLIIFLMLL
                     SSFKIFKKLSKIRKLGYLCLVLASYHYFLTPKIPMFWEWSALIIALFYFIVRYTKTLK
                     KLKSNNLTFIKT"
     gene            complement(310..2022)
                     /locus_tag="ACHFOB_001311"
     CDS             complement(310..2022)
                     /locus_tag="ACHFOB_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5800098.1"
                     /translation="MEKLKNFLSLKNIEDTQIYKELKCAKNEALILRELCRNYVVSIS
                     SINAFTLLSTIFGNDKYLYLDALEDLKKLIERGFVNQNSSFFKSLENNKTQTLTLALL
                     QSELSLSEYFLEFLEAKPRLNFEKQEAYADYLEYLKDEFARIQLYERLSFIQKSAYNS
                     EIKNQIKLYEKHIKERLKKSKFYNVLADIFKEYNLEHKEQIIFLALLKEEYALSNESS
                     ISREMNSLLSLISENDLERHKNKKLLQENAPLLNLIEYDEYLNAFGDISKSFFIIDEI
                     LQRIINFEPKQSKKIKIESVLKDQDIFELIEPSTDINDIIMPENTKELLENILKQQDK
                     KVLERLHSWGIKSNKNIEAKIIFYGPAGTGKTMSALAMAKSMKKSVLSFDCSKILSKW
                     VGESEQNVRKIFDTYKNIVQTCKQSPILLLNEADQFLSTRVDGSSGSDKMHNQMQNIF
                     LEQIERFSGVIIATTNFLESLDSAFSRRFDYKIEFQKPDFKDRLKIWEKFLPKKALFE
                     KDFDINILSNYELSGAQILMVVKNTALKVAVSKDGVFKMQDFIESIQKELNSSFDKSK
                     IVGF"
     gene            complement(2022..2846)
                     /locus_tag="ACHFOB_001312"
     CDS             complement(2022..2846)
                     /locus_tag="ACHFOB_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800099.1"
                     /translation="MKFFLLVFCFVNLALAQVYKGELYFYHLQDKEIFAIVYDNTPMT
                     PLFDRDKNQTSSSFLIVDDINGNLEIPLFKTNDFWQDEHKKYKINSSKMLTYDNKNFQ
                     GENLGTTTLELVETQDGIRIKRSLDFIGFKDDFKEFHPVHKGVFSFEQIRQKPIFLQD
                     GKISFEEWYYFYEDGMSRAILELNNFVYDINAHAFVKLNDLYNTKNQKFQNLLHEKLK
                     NTCDECFEDLQNLQFNNNFLLNNGKLKICYLPFEGHFLDENICVEFNEDELKEFKK"
     gene            complement(2857..3333)
                     /locus_tag="ACHFOB_001313"
     CDS             complement(2857..3333)
                     /locus_tag="ACHFOB_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800100.1"
                     /translation="MKHCLALCFIFFLCACSAKNQNFSSQSLMVLIASPMIKINDAAF
                     LKKENNALNLEVYKLGQAFFELKIKDKICINAVCYDKQVFNQKFFKNVYYDDILNDIL
                     KANPLWQGRNLEKTDCGFEQNLKAKNYEIFYYVCDNKVSFFDKISHTKIILTHIQN"
     gene            complement(3342..3833)
                     /locus_tag="ACHFOB_001314"
     CDS             complement(3342..3833)
                     /locus_tag="ACHFOB_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YajQ family cyclic di-GMP-binding protein"
                     /protein_id="HFN5800101.1"
                     /translation="MASEHSFDISAALDKQELKNAFEQAKKELDSRYDLKGIKCEIDL
                     SEKENIFKLSSSSEGKLDVLKDIVISKLIKRGINPNAIKELSRESGAMFRLNLKANDA
                     IDSENAKKINKAIKDSKLKVNSSIRGEEIRVVAKQIDDLQAVMKLVKELDLELNVSFK
                     NLK"
     gene            complement(3823..4758)
                     /locus_tag="ACHFOB_001315"
     CDS             complement(3823..4758)
                     /locus_tag="ACHFOB_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-2-hydroxyacid dehydrogenase"
                     /protein_id="HFN5800102.1"
                     /translation="MKIVCLDAATLGDYDLSVFEKFGSLQIYTTTNKEQTIERLKDAN
                     VAMTNKVVIDKDVIDACKNLKLILETATGVNNIDIEYAKEKGIIVKNAAGYSTMSVVQ
                     HTFAFMFAFLNQVLYYDKWSKEGKWCESPIFTDYSRILNTLSGKKHGIIGLGTIGKEV
                     VKISKAFGAEIYYYSTSGANKNADFVHLELKDLLKTCDIISIHAPLNEKTKNLLTFEE
                     LKLLKDNAILINVGRGGIINENDLAKIIDEKNIRVGLDVLEIEPMMKNHPLLSIKNKE
                     NLIITPHVAWASKEALNALMDIVYNNLKEWIENGK"
     gene            complement(4761..5930)
                     /locus_tag="ACHFOB_001316"
     CDS             complement(4761..5930)
                     /locus_tag="ACHFOB_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathionylspermidine synthase family protein"
                     /protein_id="HFN5800103.1"
                     /translation="MQLLQVDKLQKDYLENIGFSWHTDEDGSDYISNKLVCVKESEAN
                     AYYEAVNELYDMFIAAAQEVIDNDRFDELGIPFNLIDAIKMSWENEVHWHLYGRFDLA
                     GGLDGKPIKLIEFNADTPTALFESAILQWALLKQNGMDESAQFNSIYESLMDNFKRLI
                     TLDESVEGFEEHYQGWKILFSSVAGSKEEEITTKLLSHIANEAGFQTNFSFVDEVEFS
                     EEGIFKEGENYEYWFKLIPWEDIAIEEGELAMLLTQIMRNQRAIILNPAYTLLFQSKG
                     ILKILWELYPNHPLLLETKDTPLEGKNYVKKPVFGREGANISIIKDGKTLHENVGPYG
                     NNKAIYQEYVEFNSCENEYYQAGVFFAYEGCGLGFRKGGLVLDNYSKFVGHIIKD"
     gene            complement(5940..6545)
                     /locus_tag="ACHFOB_001317"
     CDS             complement(5940..6545)
                     /locus_tag="ACHFOB_001317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0323 family lipoprotein"
                     /protein_id="HFN5800104.1"
                     /translation="MKKIKKIIQIGMIGGLAAVAGGALAGCGSNNDNADTLNQAANAQ
                     GAFVIIEETAPGQYKIKDQYPSDETRVVLKDLNGTERILSKEEMDALIKEEAAKIDNG
                     TSNLTKDNGQISSGGLSLGETLLASAAGAILGSWIGSKLFNNQNFANQQRGAFSNQSA
                     YQRSVNSFNKAGTTSSASSAKKSGFFGGGSKATSSSSSFGS"
     gene            complement(6662..6874)
                     /gene="rpsU"
                     /locus_tag="ACHFOB_001318"
     CDS             complement(6662..6874)
                     /gene="rpsU"
                     /locus_tag="ACHFOB_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HFN5800105.1"
                     /translation="MPGIKVHPNESFDEAYRKFKKQVDRNLVVTEVRARRFFEPMTEI
                     RKKQKISARKKMLKRLYMLRRYESRL"
     gene            7033..>7325
                     /locus_tag="ACHFOB_001319"
     CDS             7033..>7325
                     /locus_tag="ACHFOB_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HFN5800106.1"
                     /translation="MQGHITNYTKKRYFVYLIASIIIFALPFIRINENHFFLLSFDHS
                     KLNLFFISFLTQEFYLMPFVLIFLFLFIFFITTLGGRIWCAWSCPQTIFRVIY"
BASE COUNT         2459 a         1264 c          795 g         2807 t
ORIGIN      
        1 attttgcact ttttaaatta ttttattttt gatagaaatg ctcaaatttt aaggcttttt
       61 gatgatattt cacatcgttt attagaagca agtggattta tcgcattttt aatcatattt
      121 ttaatgcttt taagttcttt taaaatcttt aaaaaactta gtaaaatcag aaaattagga
      181 tatttatgct tagttttggc aagttatcat tattttttaa ccccaaaaat tcctatgttt
      241 tgggaatgga gtgctttaat tatagctttg ttttatttta tagttcgcta tacaaaaaca
      301 ttaaaaaagt taaaatccaa caatcttact tttatcaaaa cttgaattta attctttttg
      361 tatgctttct ataaaatctt gcattttaaa aaccccatct tttgatacag ctactttcaa
      421 agccgtattc ttcaccacca ttaaaatttg tgctccactt aattcataat ttgataaaat
      481 atttatatca aaatcttttt caaataatgc ttttttaggt agaaactttt cccaaatttt
      541 aagcctatct ttaaaatcag gtttttgaaa ttctatctta taatcaaatc ttcttgaaaa
      601 tgcactatct aagctttcta aaaaatttgt cgtagcgata atcacaccac taaaacgctc
      661 aatttgctct aagaatatat tttgcatttg attatgcatt ttatcgctac cactacttcc
      721 atctacacgc gtacttaaaa actgatcggc ttcattgaga agtaaaatag gactttgttt
      781 acaagtttgc acgatatttt tataagtatc aaaaattttt cttacatttt gctcactctc
      841 tccaacccat ttgctcaaaa ttttagaaca gtcaaaacta agaacagatt ttttcattga
      901 tttagccata gctaaagctg acatagtttt tccagtacca gcaggaccat aaaaaataat
      961 tttagcttct atatttttat tactctttat accccaagaa tgaagtcttt ctaggacttt
     1021 tttatcttgt tgttttaaaa tattttctaa aagctctttt gtattttcag gcataataat
     1081 atcattgatg tcagtgcttg gttctataag ctcgaaaata tcttgatctt ttaaaacact
     1141 ttcaattttg atttttttac tttgttttgg ttcaaaattt ataattcttt gtaaaatttc
     1201 atcaataata aaaaaacttt tagaaatatc tccaaaagca tttaaatatt catcatactc
     1261 gattaagttt aaaagaggag cattttcttg taatagtttt ttgtttttgt gtctttctaa
     1321 atcattttca ctgattaaag aaagtaaaga attcatttct ctagaaatcg aactttcatt
     1381 acttaaggca tattcttctt ttaaaagtgc tagaaaaata atttgttctt tatgttcaag
     1441 attatattct ttaaaaatat cagccaatac attataaaat ttactttttt ttagtctttc
     1501 tttgatatgt ttttcataaa gtttaatttg attttttatt tcactattat aagcactttt
     1561 ttgtataaaa cttaatcttt cgtataattg aatacgcgca aattcatctt ttaaatattc
     1621 taaataatct gcataagcct cttgtttctc aaaatttaaa cgaggttttg cttctaaaaa
     1681 ttctaaaaaa tattcactta gactaagctc actttgcaat aaggcaagag ttaatgtttg
     1741 agttttatta ttttccaaac ttttaaaaaa actcgaattt tgatttacaa aacctctttc
     1801 gataagtttt tttaaatcct ccaaagcatc aagataaaga tacttatcat ttccaaaaat
     1861 tgtcgataat aaagtaaagg cattgataga agaaatagaa acgacataat ttctacaaag
     1921 ctctctaaga atcaaagcct catttttagc acacttaagc tctttataaa tttgagtatc
     1981 ttctatattt ttcaaactta aaaaattttt taatttttcc attatttttt aaattcctta
     2041 agctcatctt cgttaaattc tacgcaaata ttttcatcta aaaaatgacc ttcaaaaggt
     2101 agataacaaa tttttagttt tccattatta agcaaaaaat tattattaaa ttgtaaattt
     2161 tgcagatctt caaaacactc atcacatgta tttttaagct tctcatgtaa aagattttga
     2221 aatttttgat ttttagtatt atacaaatca tttagtttta caaatgcgtg agcattaata
     2281 tcataaacaa aattatttaa ctctaaaata gcacgactca taccatcttc ataaaaataa
     2341 taccattctt caaaactaat ttttccatct tgtaaaaaaa taggtttttg gcgaatttgt
     2401 tcaaaactaa atacaccctt atgaacagga tgaaattctt taaaatcatc cttaaaacct
     2461 ataaaatcaa gactacgctt tatgcgaata ccatcttgcg tttcaacaag ttctaaagta
     2521 gttgttccta aattttctcc ttgaaaattt ttattatcat atgtaagcat tttagaagaa
     2581 ttgattttat attttttatg ctcatcctgc caaaaatcat ttgtcttaaa gagtggaatc
     2641 tctaaatttc catttatatc atcaacaatt aaaaaactag aacttgtttg atttttatcc
     2701 ctgtcaaaaa gtggagtcat aggtgtatta tcataaacta tggcaaaaat ttctttatcc
     2761 tgcaaatgat aaaaatacaa ttcaccttta taaacttgcg ctaaagctag atttacaaag
     2821 caaaatacca gtaaaaaaaa tttcaaactc tatccttcaa ttttgaatat gcgttaagat
     2881 aattttagta tgtgaaattt tatcaaaaaa acttacttta ttatcacaaa cataataaaa
     2941 aatttcataa ttttttgctt ttaaattttg ttcaaaacca caatcagttt tttctaaatt
     3001 tctaccttgc cataaaggat ttgcctttaa aatatcattt aaaatatcat cataatatac
     3061 atttttaaaa aatttttgat taaacacttg tttatcataa cacactgcat tgatgcaaat
     3121 tttatctttg attttgagtt caaaaaaagc ttgccctagt ttataaactt ctaaatttaa
     3181 agcattattt tcttttttta aaaaagctgc atcattgatt tttatcatag gagaagcaat
     3241 caaaaccatc aagctttgac ttgaaaaatt ttgatttttc gcactacaag cgcaaagaaa
     3301 aaaaataaaa catagagcta aacaatgttt caaatttgac cttatttgag atttttaaaa
     3361 ctgacattta actctaaatc aagctctttt acaagcttca tcacagcttg caaatcatcg
     3421 atttgttttg ctacaacacg aatttcttca ccacgaatcg aagagttaac tttaagcttg
     3481 ctatctttaa tagctttatt gattttttta gcattttcac tatcaatagc atcgtttgct
     3541 ttcaaattta aacgaaacat tgctccactt tcacgagaaa gctctttaat agcattagga
     3601 ttaattcctc ttttgataag tttagaaatc actatatctt ttaaaacatc aagttttcct
     3661 tcactagaag aactgagttt aaaaatattc tctttttcgc ttaaatcaat ctcacactta
     3721 attcctttta agtcataacg actatcaagt tcttttttag cttgttcaaa agcatttttt
     3781 aactcttgct tatctaaagc tgctgaaata tcaaaactat gttcacttgc cattttctat
     3841 ccattctttt aaattattat aaactatatc cattaaagca tttaaagctt ccttactcgc
     3901 ccatgcaaca tgaggggtga taataagatt ttctttattt ttaatgctta aaagcggatg
     3961 atttttcatc ataggttcaa tttctaaaac atcaagccct acacgaatat ttttttcatc
     4021 tatgatttta gctaaatcat tttcattgat aatcccacct cttcctacat taatcaaaat
     4081 cgcattatct tttaaaagct ttaattcttc aaaggtgagt aaatttttgg ttttttcatt
     4141 taaaggtgcg tggatactta taatatcgca agtttttaat aaatctttta attccaaatg
     4201 tacaaaatct gcgtttttat tggctccact cgtagaataa taataaattt cggctccaaa
     4261 agcctttgaa atttttacca cttctttacc tatggttccc aaacctataa taccatgttt
     4321 tttaccactt aaggtgttta aaattctact ataatctgta aaaataggac tttcacacca
     4381 tttaccctct ttgctccatt tgtcataata aagcacttga tttaaaaaag caaacataaa
     4441 cgcaaaagta tgttgcacca cactcatagt agaataccca gcagcatttt ttacaataat
     4501 acctttttct ttagcatact caatatcgat attattaacc cctgtagcag tttccaaaat
     4561 gagttttaaa tttttacaag catcaatcac atctttatca attacaacct tgtttgtcat
     4621 ggcgacatta gcatctttta aacgctctat ggtttgctct ttatttgttg tagtataaat
     4681 ttgcaaagaa ccaaattttt caaaaacact taaatcataa tcccctaaag ttgccgcatc
     4741 taaacaaaca attttcattt ctaatccttt ataatatgtc ctacaaattt agaataatta
     4801 tcaagcacaa gtcctccttt tctaaatcct aagccacacc cttcataagc aaagaaaaca
     4861 cctgcttgat agtattcgtt ttcacatgaa ttaaactcta catattcttg ataaatagcc
     4921 ttattattcc cataaggacc tacattctca tgcaaagttt ttccatcttt aattatactg
     4981 atatttgcgc cttctctacc aaaaacaggt tttttaacat agtttttacc ctctaaagga
     5041 gtatcttttg tttctaaaag taatggatga tttggataaa gttcccatag aatttttaaa
     5101 attcccttag attgaaataa aagcgtataa gcaggattta aaataattgc tctttgatta
     5161 cgcatgattt gagttaaaag catggcaagt tcaccctctt ctatagctat atcttcccaa
     5221 ggaataagct taaaccaata ctcataattt tcgccctctt taaaaatacc ctcttcgcta
     5281 aattccacct catccacaaa ggaaaaatta gtttgaaaac ctgcttcatt ggctatatga
     5341 gaaagtaatt ttgtagtgat ttcttcttct ttacttcctg caacacttga aaaaagaatt
     5401 ttccatcctt gataatgctc ttcaaaccct tcaacacttt catcaagagt aataagtctt
     5461 ttaaaattat ccatcaaact ttcataaata ctattaaatt gtgcgctttc atccattcca
     5521 ttttgtttta aaagtgccca ttgtaaaatc gcactttcaa aaagagcagt aggggtatca
     5581 gcattaaatt ctataagttt tataggcttg ccatcaagtc cacccgctaa atcaaaacgc
     5641 ccatataaat gccaatgaac ctcattttcc caactcatct taatcgcatc aataagatta
     5701 aaaggaattc caagctcatc aaaacgatca ttatcaatca cttcttgcgc tgcagcaata
     5761 aacatatcat aaagctcatt taccgcttca taataagcat tagcttcact ttccttaaca
     5821 caaactaact tattgctaat ataatcactt ccatcttcat ctgtatgcca agaaaaacct
     5881 atattttcta aataatcttt ttgaagtttg tctacttgta gtaattgcat tatttatcct
     5941 taagagccaa aagaagaact agaacttgtg gctttagagc ctccaccaaa aaaacctgat
     6001 tttttagcac ttgaagcaga gcttgttgtg cctgctttat taaaactatt aacactcctt
     6061 tgataagcac tttgatttga aaaagcaccg cgttgttgat tagcaaaatt ttgattattg
     6121 aaaagttttg aacctatcca acttcccaaa atagcacctg cagcacttgc gagtaaagtt
     6181 tcccctaaac tcaatccccc actactgatt tgcccattgt ctttagttaa atttgaagtt
     6241 ccattgtcaa ttttagctgc ttcttcttta atcaaagcat ccatttcttc tttggataaa
     6301 attctttctg taccattaag atcttttaaa actacccttg tttcatcact tggatattga
     6361 tctttgattt tatactgccc tggagctgtt tcttcgataa ttacaaaagc tccttgagca
     6421 ttagctgctt gatttaaagt atctgcattg tcattattac ttccacaacc tgctaaagca
     6481 cctccagcaa cagctgctaa accacctatc ataccaattt gaatgatttt tttgattttt
     6541 ttcataagtt tatcctaaaa acagaaaatt taaatttaga aattttaaca aaaaataata
     6601 aatacttttt aataccaaat gaagtttgta gatataaaaa aagccctttc gggcttttgg
     6661 gttagagtct tgactcgtag cgtctaagca tataaagtct tttaagcatt tttttgcgtg
     6721 ctgaaatttt ttgttttttg cgaatttcag tcataggctc gaaaaatctt cttgctctta
     6781 cttcagttac aactagattt ctatctactt gttttttgaa tttacgatac gcttcatcaa
     6841 aagactcgtt aggatgcacc ttgattcctg gcacagtcct caccaccttt ctgtgtaaat
     6901 ttttgttgtg aaatataatt ataaaacact tcttattaat tctaacttag aaagcattta
     6961 aaaattgttt tagtttttat cggttataat ccttaattac aaagtgctaa aaattataat
     7021 taaggtctaa aaatgcaagg acacattaca aactatacaa aaaaacgata ttttgtatat
     7081 ttaattgcaa gtattatcat atttgcccta cctttcataa gaattaatga gaatcatttt
     7141 tttcttttaa gttttgatca ctctaaatta aacctatttt ttatttcttt tttaacacaa
     7201 gaattttatc tcatgccttt tgttcttata tttctttttt tatttatttt ttttattaca
     7261 actttaggtg gaagaatttg gtgtgcttgg agttgtccac aaacgatttt tagagttata
     7321 tatag
//
LOCUS       DAZBIH010000076         7149 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.077, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000076 DAZBIH010000000
VERSION     DAZBIH010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7149)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7149)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7149
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.077"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            47..823
                     /gene="surE"
                     /locus_tag="ACHFOB_001320"
     CDS             47..823
                     /gene="surE"
                     /locus_tag="ACHFOB_001320"
                     /EC_number="3.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008252 - nucleotidase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5'/3'-nucleotidase SurE"
                     /protein_id="HFN5800107.1"
                     /translation="MKEILITNDDGYESEGLKKLIKMLTKEFKAKITIVAPASEKSAC
                     SHSITLTKPLRFVKVGKRFYKLDDGTPADCVYLALHALYKKRLPDLVISGINKGANVG
                     EDITYSGTCAGAMEAVLQGIPAIALSQFYKKSEKELDYKNALQITKKIIQNIFDKGFP
                     LEKKEFLNINFPAKSKIKGIKICKAGKRVYNFEAYSNVNPRGVEYYWLAAANLDFEDE
                     KNSDITLLKKGYATITPIMLDLTAYERMKKVKKWLKANDE"
     gene            813..1466
                     /locus_tag="ACHFOB_001321"
     CDS             813..1466
                     /locus_tag="ACHFOB_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HFN5800108.1"
                     /translation="MMNDRFTRIKWLVGEEKFQKISQTKVLVCGLGGVGGICVDALYR
                     SGFQNLTLIDADKFEITNQNRQIHSENLGEEKAKVFARIYNVKGIVSKIDNEFLANFD
                     LSEFDLIIDAIDDIPAKVALANLIDFKRQIFISSTGGARKLDPTRIKTTSIFKTHGDA
                     LAKKFRYELRKSGFKGNFDVVFSDEEAHCKDLGSFMGVTASFGLALASLALRKVLAR"
     gene            complement(1541..1921)
                     /gene="panD"
                     /locus_tag="ACHFOB_001322"
     CDS             complement(1541..1921)
                     /gene="panD"
                     /locus_tag="ACHFOB_001322"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004068 - aspartate 1-decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0006523 - alanine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HFN5800109.1"
                     /translation="MNITLLKSKIHRANVTEARLDYVGSISIDEKLLQASGILEYEKV
                     QVVNVNNGARFETYTIATQEEGVVCLNGAAARLAEVGDKVIIMSYADFNEEEAKTFKP
                     KVVFVDENNTATKITNYEKHGAIF"
     gene            complement(1918..2766)
                     /gene="panC"
                     /locus_tag="ACHFOB_001323"
     CDS             complement(1918..2766)
                     /gene="panC"
                     /locus_tag="ACHFOB_001323"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004592 - pantoate-beta-alanine ligase
                     activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HFN5800110.1"
                     /translation="MQVITSVKEAKQIVKDWKSHQLSIGYVPTMGFLHDGHLSLVKNA
                     KTQDKVIVSIFVNPMQFGPNEDFSSYPRDLERDIKMCQDNGVDMVFIPDAAQMYLKNF
                     STYVDMNTITDKLCGAKRLGHFRGVCTVLAKFFNILNPDIVYMGQKDAQQCVVVRHMV
                     DDLNFDLKIQICPIIREEDGLAKSSRNVYLSEEERKASLAISQSIFLAEKLVQEGEKD
                     TSKIIQAMKDILEKEKLIKIDYIELVDFNTMENIKNIADNVLGAVAAFVGKTRLIDNF
                     LVQGLK"
     gene            complement(2777..3601)
                     /gene="panB"
                     /locus_tag="ACHFOB_001324"
     CDS             complement(2777..3601)
                     /gene="panB"
                     /locus_tag="ACHFOB_001324"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HFN5800111.1"
                     /translation="MRKSMISFLEKKAKNEKITMVSAYDYHSAKILDNCDIDIILVGD
                     SLAMTVLGMQDTLSVTMDEMLIFTKAVSRGAKKSFVLADMPFMSYQSSDRDAILNASR
                     FIKESHANGVKVEGGIEIASKIKLISQSGIPVVAHLGLTPQAVNMLGGYRVQGKDLQS
                     AQKIIDDAKAVQDAGACMLVVECVPVKLAQKISSILEIPTIGIGSGKYCDGQVLVYHD
                     LLGLNKDFKAKFVKHFDKIDPQVGVEKYRDEVKSGIFPSQEHSFDYLDDELLDKLY"
     gene            complement(3758..4648)
                     /locus_tag="ACHFOB_001325"
     CDS             complement(3758..4648)
                     /locus_tag="ACHFOB_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate/molybdate ABC transporter ATP-binding
                     protein"
                     /protein_id="HFN5800112.1"
                     /translation="MIKIDIKLPINTAKGKKQLELNTCLKANEITAIFGESGAGKTTL
                     LKIIAGLIKPEFGRIEVGDELWLDTQKNINLAIQKRKIGFVFQDYALFPNMSVKENIS
                     YAATSKQKVEELLSLMNLENLAKIYPKNLSGGQAQRVALARALAREPQILLLDEPLSA
                     LDFKMRSFLQDELVKILQHFKITTLLVSHDLAEIYKLSHRILELSDGKIIKDARTNEF
                     FTSSNLSAKLRLSATLLEIKKSDILMIFTLLLNQDIVKITLSEEEFLRTYKNVKIGDT
                     LLLSIKAFNPIIVGKLDKQK"
     gene            complement(4658..5326)
                     /gene="modB"
                     /locus_tag="ACHFOB_001326"
     CDS             complement(4658..5326)
                     /gene="modB"
                     /locus_tag="ACHFOB_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002854336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter permease subunit"
                     /protein_id="HFN5800113.1"
                     /translation="MDNDFLQTLYLTFKLAFITTFILFFIGVFLAYLLSFVKFPFKSL
                     VQTFVALPLVLPPSVLGFYLLISFSQNSFLGQFLKEYFNLSLVFSFEGLVFASLIFSL
                     PFMVNPLQSAFSSINQNLLDASYALGKGKIYTLFRVILPNSKVGIFSACAMSFAHTIG
                     EFGVVMMIGGHKKGETLVASIAIYDELEVLNYTLAHQYAFTLFAISFAILLSLYFVNK
                     KIAL"
     gene            complement(5319..5720)
                     /locus_tag="ACHFOB_001327"
     CDS             complement(5319..5720)
                     /locus_tag="ACHFOB_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002778137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HFN5800114.1"
                     /translation="MNILNGKIIELLNEGEIVIVKISIKEHIFKVLMLDLHSLQDLKI
                     GTKIQVLFKEHELGFALPHSILSVENSFLARIKSIKKGKILYHIFFDFEGDEISSIIA
                     KEKALELKLEEGQEWLCFVKENDIILKAIYG"
     gene            complement(5717..6466)
                     /gene="modA"
                     /locus_tag="ACHFOB_001328"
     CDS             complement(5717..6466)
                     /gene="modA"
                     /locus_tag="ACHFOB_001328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030288 - outer membrane-bounded
                     periplasmic space [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015412 - ABC-type molybdate transporter
                     activity [Evidence IEA];
                     GO_function: GO:0030973 - molybdate ion binding [Evidence
                     IEA];
                     GO_process: GO:0015689 - molybdate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HFN5800115.1"
                     /translation="MKKLVLIFIVLFLSLNLNAQNLSVFVASSASKAMEEVKNEFLKS
                     HPNDNIDLVFGASGKYYQLLKQGREFDLFFSADTKYAQAIYEDQNALDKPKVYVLGIL
                     ALYSLDESLLEGGIEKLKDKANKIHHLSLANPKVAPYGVAAKEVLENLKLDKLFEDKI
                     VLGENISVPVLHVDSNNADLGIVAYSLVSSINHPKGKAILIDQKYFTPLKQSYVITRY
                     AKDKKLAFEFSDFISSQKAKEIFKKYGFDTP"
     gene            complement(6520..>7149)
                     /locus_tag="ACHFOB_001329"
     CDS             complement(6520..>7149)
                     /locus_tag="ACHFOB_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002791311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HFN5800116.1"
                     /translation="GLKLCEILKNLEISHFKKVFEFGCGRGEFSDKLSKIITFDEYLK
                     NDILDYPDNLNVEIFDMNTLATQILSKQKFDLITSNASLQWLDLKQVLPTLANMLNEK
                     GILLLSTFGKMNLKEIKQSTGLGLKYFSTKELEQIFKPYFSDIKITEEIVNLEFQNAL
                     EVFKHLKLSGVNSLGFYRLNKQFLKEFEEKFQNKLTYHPIFILCKKDTK"
BASE COUNT         2407 a         1169 c         1085 g         2488 t
ORIGIN      
        1 aaaaaatatg ttaaaatcca gatttttatc ttttgcaagg aagacaatga aagaaattct
       61 tatcactaat gacgatggtt atgaaagcga aggacttaaa aaactcatta agatgttaac
      121 aaaagaattt aaagccaaga tcaccatagt agctcctgct agtgaaaaat cagcttgttc
      181 gcactctata accctaacca aacctttgcg ttttgttaaa gtgggaaaaa gattttacaa
      241 acttgatgat ggcactccag cagattgtgt ttatcttgct ttgcatgctt tatacaaaaa
      301 gcgtttgcct gatcttgtaa taagtgggat taataaaggt gctaatgtag gcgaggatat
      361 tacctactca ggaacttgcg caggagctat ggaggcggtt ttacaaggaa ttcctgctat
      421 cgctctttct caattttata aaaaaagcga aaaagaacta gactataaaa atgctttaca
      481 aattaccaaa aaaatcattc aaaatatttt tgataaaggt tttcctttgg aaaaaaaaga
      541 atttttaaat atcaattttc ctgcaaaatc aaaaatcaaa ggcattaaaa tttgtaaagc
      601 aggcaaaagg gtttataatt ttgaagccta ttcaaatgtc aatccgagag gagtagagta
      661 ctattggctt gcagcggcga atttagactt tgaagatgag aaaaatagcg atattacctt
      721 acttaaaaaa ggctacgcta caataacacc tataatgctg gatcttacag cttatgaaag
      781 aatgaaaaaa gttaaaaaat ggttaaaggc aaatgatgaa tgatagattt acacgtataa
      841 aatggctagt tggagaagaa aaatttcaaa aaatttcaca aacaaaagtt ttggtttgcg
      901 gacttggtgg agtgggtgga atttgcgttg atgcgcttta tcgtagcggt tttcaaaatc
      961 ttactttaat cgatgcggat aaatttgaaa tcaccaatca aaaccgccaa attcatagtg
     1021 aaaatttagg cgaagaaaaa gctaaggttt ttgctagaat ttacaatgtt aagggtatag
     1081 taagtaaaat agacaatgaa tttttagcaa attttgattt aagtgaattt gatttaatca
     1141 tcgatgcaat tgatgatatc cctgcaaaag tagcacttgc caatttgatc gattttaagc
     1201 gtcaaatttt tatctcttct acaggtgggg ctagaaagct tgatcctacg cgtataaaaa
     1261 ctacaagtat atttaaaacc cacggagatg ctttagcaaa aaaatttcgt tacgagctta
     1321 gaaaatcagg ttttaaagga aattttgatg tggttttttc agatgaggaa gcgcattgta
     1381 aagatcttgg atctttcatg ggtgtgactg catcttttgg tttagcttta gcaagtttag
     1441 cattaagaaa agttcttgct agataagatt gaaatttaaa tatttatctt agataaatga
     1501 atttatctaa gatagaaaaa attacaaaaa tagttagata ttagaaaata gctccgtgtt
     1561 tttcataatt tgttattttt gtagcagtgt tattttcatc tacaaagaca acttttggtt
     1621 taaatgtttt tgcttcttct tcgttaaaat cagcataaga cataatgatc actttatctc
     1681 ctacttcagc aagacgagcc gcagcgccat ttaagcatac aaccccttct tcttgtgtag
     1741 cgatggtgta ggtttcaaat ctagcgccat tattgacatt gactacttga actttttcgt
     1801 attctaaaat tccactcgct tgcaataatt tttcatctat gcttatgctt cctacataat
     1861 caagcctagc ttctgttacg tttgcacggt gtatttttga tttgagtaaa gtaatgttca
     1921 ttttaatcct tgtactaaaa aattatcaat gagtcttgtt tttccaacaa aagcagccac
     1981 tgctcctaaa acattatcgg cgatattttt aatattttcc atagtgttaa aatcaactaa
     2041 ttctatataa tcgattttga ttaatttttc tttttctaaa atatctttca tagcttggat
     2101 aattttggaa gtatcttttt ctccttcttg gactaatttt tcagctaaaa aaatgctttg
     2161 agatatagct agtgacgctt ttctttcttc ttcgctaaga tatacatttc tagagctttt
     2221 agctaagcca tcttcttctc taatgatagg acaaatttga atttttaaat caaaatttaa
     2281 atcatcaacc atatgtctaa cgactacgca ttgctgcgcg tctttttgcc ccatatagac
     2341 tatatcaggg tttaggatat taaaaaattt agccaaaact gtgcaaacgc ctctaaaatg
     2401 ccccagtctt ttagctccac aaagcttatc cgtgatcgtg ttcatatcca cataggtgct
     2461 aaaattctta agatacattt gagctgcatc ggggataaaa accatatcaa cgccattatc
     2521 ttgacacatt ttaatgtcgc gttctaaatc tcttggataa ctagaaaaat cttcattagg
     2581 gccaaattgc ataggattta caaagatact tactatgact ttatcttgtg ttttggcatt
     2641 tttgactaaa cttaaatgcc catcgtgtaa aaaacccatg gttggaacat agcctatact
     2701 aagttgatgt gatttccaat cttttacaat ttgttttgct tctttgacag aagtaatgac
     2761 ttgcatattt gtatccttag tataatttat ctaataattc atcatctaaa taatcaaagc
     2821 tgtgctcttg ggaaggaaaa ataccgcttt taacttcatc tctatatttt tcaactccta
     2881 cttgaggatc aattttatca aaatgcttta caaattttgc tttaaaatct ttatttaaac
     2941 ccaaaagatc gtgataaact aaaacttgtc catcgcagta tttgcctgaa cctatgccga
     3001 ttgttggaat ttctaaaata gagcttattt tttgtgctag ttttacaggc acacattcta
     3061 caaccaacat acaagcaccc gcatcttgca cagcttttgc atcatctatg attttttggg
     3121 ctgattgtaa atctttacct tgaaccctat agccacctag catatttaca gcttgtgggg
     3181 ttagtcctag gtgagcaacg acgggtattc ctgattggga aatcaattta atcttacttg
     3241 cgatttctat acccccttcc acttttaccc catttgcgtg gctttctttg ataaatcttg
     3301 aggcatttaa gatagcgtca cgatctgaac tttgataaga cataaaaggc atatcagcaa
     3361 gtacgaaaga ctttttagct ccgcgagaaa cagctttggt aaaaatcaac atttcatcca
     3421 tagtaacact taaagtatct tgcatgccaa gcactgtcat agctaatgaa tctccaacca
     3481 atatgatatc tatatcgcaa ttatctagaa tttttgcact atgataatca tacgcactta
     3541 ccatggttat tttttcattt ttggcctttt tttccaaaaa actaatcata ctttttctca
     3601 ttttgcatac ctcaattttt agctataaaa taataagcaa aaaactagca tataaatttt
     3661 cataaatagt aaataaacga taaaacaaaa tatatttaat taatggattg ttttaatggt
     3721 tacaattttg gaaaatttct atagaaaaat taaattttta cttttgttta tcaagttttc
     3781 ctacgatgat agggttaaag gcttttatgg atagtaaaag cgtatcgccg atttttacat
     3841 ttttataagt tcttaaaaat tcttcttcgc taagtgtgat tttaacgata tcttgattta
     3901 aaagtagggt aaaaatcatc aaaatatcac tttttttaat ctcaagcaaa gttgcactta
     3961 aacgcagttt cgcacttaaa tttgatgagg taaaaaattc atttgttctt gcatctttga
     4021 tgatttttcc atcactaagc tctaaaattc tatgacttaa tttgtaaatt tcagccaaat
     4081 cgtgacttac caataaagta gtgattttaa aatgttgtaa aattttcaca agctcatctt
     4141 gcaaaaaaga tcgcatttta aagtctaatg cactcaaagg ctcatctaaa agtaaaattt
     4201 gcggttctct cgctaaagcc cttgctaaag ccactctttg tgcttgtcca ccgcttaaat
     4261 ttttgggata aattttggct aaattttcta aattcattaa gcttaaaagc tcttctactt
     4321 tttgttttga agtcgcagcg taagaaatgt tttcttttac gctcatattt ggaaaaagag
     4381 cataatcttg aaaaacaaag ccgatttttc ttttttgtat ggctaaattg atattttttt
     4441 gggtatcaag ccaaagctca tctcctactt ctatgcgccc aaattcaggt tttataagtc
     4501 ctgcaatgat tttaagtaga gtcgtttttc ccgcaccgct ttctccaaaa atagcagtga
     4561 tttcatttgc ttttaggcaa gtgtttaatt ctagttgctt cttgcctttt gctgtgttaa
     4621 tgggaagttt tatatcgatt tttatcataa aattggccta tagagcgatt tttttgttca
     4681 caaaataaag acttaagagt atggcaaaag aaatcgcaaa taaagtaaaa gcgtattgat
     4741 gtgctaaggt atagtttaaa acttcaagct catcataaat agcaatactt gcgaccaaag
     4801 tttcaccttt tttgtgtcca cctatcatca tcaccactcc aaattcacca atggtgtgtg
     4861 caaaactcat cgcgcaagca ctaaaaatcc ctactttaga attgggtaaa atcactctaa
     4921 aaagtgtata aattttaccc tttcctagag cataagaagc atcaagtagg ttttgattga
     4981 ttgatgaaaa agcactttgt aaaggattta ccataaaggg cagagaaaaa atcaaagaag
     5041 caaatactaa accttcaaag ctaaaaacca aagaaaggtt aaaatattct tttaaaaatt
     5101 gtcctaaaaa gctgttttgt gaaaagctta tgagtaaata aaatcccaaa acacttggag
     5161 gcaaaaccaa gggcaaagct acaaaggttt gcaccaagct tttaaaagga aatttcacaa
     5221 agcttaaaag ataggctaaa aatactccga tgaaaaagag tataaaggta gtgataaatg
     5281 caagtttaaa ggtaagataa agggtttgta aaaaatcatt atccataaat agcctttaaa
     5341 atgatatcgt tttccttgac aaagcaaagc cattcttgtc cttcttcgag cttaagctct
     5401 aaggcttttt ctttagcgat aatgctagaa atttcatcac cctcaaaatc aaaaaagata
     5461 tgatatagaa ttttgccctt tttaatactt ttaatccttg ctagaaatga attttccaca
     5521 cttaaaatag aatgaggcaa ggcaaagcca agttcgtgtt ctttaaaaag cacttgaatt
     5581 tttgtaccta ttttaagatc ttgcaaagaa tgaagatcaa gcattaaaac tttaaaaata
     5641 tgctctttaa tactgatctt aacgatgaca atctcaccct catttaaaag ctctataatc
     5701 ttgccattta agatattcaa ggtgtgtcaa atccgtattt tttaaagatt tcttttgctt
     5761 tttgtgagct gataaaatcg ctaaattcaa aggctaattt tttatcttta gcgtatcttg
     5821 tgatgacata gctttgtttt aaaggggtga agtatttttg atcgattaaa atagctttgc
     5881 ccttaggatg attgatagaa gatactaaag aataagccac aatacccaaa tccgcattat
     5941 tgctatcgac atgtaaaacg ggcacggaga tattttcacc taaaacaatt ttatcttcaa
     6001 agagtttgtc taattttaaa ttttcaagta cttctttagc agctactcca taaggagcaa
     6061 cttttggatt tgcaaggctt aggtgatgaa ttttatttgc tttatctttt agcttttcta
     6121 tcccaccttc aagtaagctt tcatctaagc tatataaggc taagatacct aaaacataaa
     6181 cttttggttt atctaaagcg ttttgatcct cataaattgc ttgcgcgtat tttgtatcgg
     6241 ctgaaaaaaa tagatcaaat tctctccctt gtttcaaaag ttgataatac tttcccgaag
     6301 caccaaaaac aagatctata ttgtcattag ggtgtgattt taaaaattca tttttgactt
     6361 cttccatagc ttttgaagct gaagaagcta cgaaaacact taaattttgt gcatttaaat
     6421 ttaaagataa aaacaacact ataaaaatta acacaagctt tttcactgca ctttcctttg
     6481 tagataatct tgattttttg tattataaca taagaaattt tattttgtat cttttttgca
     6541 taaaataaaa ataggatgat aagtgagttt attttggaat ttttcttcaa attcttttaa
     6601 gaattgcttg tttaagcgat aaaatcccaa agaatttacc ccgcttaatt tcaaatgctt
     6661 aaaaacctct aaagcgtttt gaaattccaa atttacaatt tcttcagtga ttttaatatc
     6721 agaaaaatag ggtttaaaaa tttgttcaag ttcttttgtg ctaaaatatt ttaaacccaa
     6781 gcctgtgctt tgtttgatct cttttaaatt catttttcca aaagtagaaa gaagtaaaat
     6841 tcctttttca tttaacatat ttgctagtgt gggcaaaacc tgctttaaat caagccattg
     6901 caaactcgca ttagaagtga taagatcaaa tttttgcttg cttaaaatct gtgtagctag
     6961 ggtattcata tcaaaaattt ctacattaag attgtcagga taatccaaaa tatcattttt
     7021 tagatattca tcaaaagtga taatttttga aagtttgtcg ctaaattcgc ccctaccaca
     7081 accaaattca aacacttttt taaaatgcga aatttctaaa ttttttaaaa tttcacaaag
     7141 ttttaaacc
//
LOCUS       DAZBIH010000077         7145 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.078, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000077 DAZBIH010000000
VERSION     DAZBIH010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7145)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7145)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7145
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.078"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            235..2070
                     /gene="sdhA"
                     /locus_tag="ACHFOB_001330"
     CDS             235..2070
                     /gene="sdhA"
                     /locus_tag="ACHFOB_001330"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0022900 - electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     flavoprotein subunit"
                     /protein_id="HFN5800117.1"
                     /translation="MGEFSRRDFIKTACISVGALAASSSGVYALDDSSKMDKDTNLPS
                     CDVLVIGSGGAGLRAAAAVRKENPKLSVVVATKMMPSRNATCMAEGGINGVTDFSNGD
                     SYKLHAYDTIKGGAYLVDQDAALKFCELAGKAIFNMDFIGTLFSRNEQGGVAQRLMGG
                     ASKKRCNYSADKTGHILMHSCLDDAISSGVKFLMDHELLDIGVVDGKCEGVVLRDIQS
                     GGIYPVLCKALVIATGGYTRIFYNRTSTPFIATGDGVAAALRAGLGFEDPEMIQFHPT
                     GVANGGTLITEAARGEGGYLLNNRGERFMKNYHEKMELAPRDVVARAIETEIREGRGY
                     GEGLGAYVLCDVRHLGKEKILKDLPKIRHTAMLFENIDLVDTPVPIRPTAHYSMGGIE
                     VAKFEDMSTKIAGIYVGGEASCISIHGANRLGGNSLADAVVTGHLAGIGATNYAKDAS
                     FGKGAKTHELAQKWQARFKEITNNGGNGQEMYELREELGSQNWDNMGIFRTQEKLDLL
                     AKNLEDIQARYEKIRIPNPNEVMNTAFTDYVELGNLILLSRCACLAARNRLESRGAHT
                     REDYPKRDDKNFLKHSIVNLENDELKLSYKDVVVTEFSLDGRRVQ"
     gene            2067..3032
                     /gene="sdhB"
                     /locus_tag="ACHFOB_001331"
     CDS             2067..3032
                     /gene="sdhB"
                     /locus_tag="ACHFOB_001331"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HFN5800118.1"
                     /translation="MKIIIDRFNGKEKYEQSYDIDDKDIQGKTLLSLLLFIKKTKDIT
                     LNFTASCQSAICGACAVRVNGHSYLACDTKMQDLLKEYDNPSSIRISPLGNFRVISDL
                     IVDWEPSIENLRKIRPAMVAKNEFSAEKGCKQSQEEFDRISKQWDCILCGSCASECNK
                     LEADSSDYMQPFVFTHAWRAAADSRGKDPMLHVKPSVMNGLWLCVHCQECADRCPKGI
                     SSVSDIANLRVMAIKKGLNEGLGPDHAEAFYKDLVEGSGRLNEIYLALRSEGVIGSMG
                     KTDIAFKLMRAGKMNPMHVFGEDEIEGHKDLVKMIKAAQEAAVKE"
     gene            3036..3893
                     /gene="sdhE"
                     /locus_tag="ACHFOB_001332"
     CDS             3036..3893
                     /gene="sdhE"
                     /locus_tag="ACHFOB_001332"
                     /EC_number="1.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="8-methylmenaquinol:fumarate reductase membrane
                     anchor subunit"
                     /protein_id="HFN5800119.1"
                     /translation="MQKEYAFFPGCVLSQAAKESKISLEAIAPILGWKLNEIKGWSCC
                     GASQAQCVDPIATLVANARNIALAEEMKMPMLTTCSTCMLTLTKAKNTLDKGAKERIN
                     TFLAKGGMKYQGSTPITSLLWELYEDLDNLKSKVKKPLSNLKVALFYGCHSLRPEDTF
                     GKKESSTNPKSFESVVEVLGAKIVPFEKRLDCCGFHASYPAEKSVKKMSSQIVNNASE
                     NQADCVVTPCPLCQMQLDIYQERFQDYTNSKARLPIIHLSQLVGLALGLSKEMVGLDY
                     NIIDASKIA"
     gene            complement(3917..4585)
                     /gene="tenA"
                     /locus_tag="ACHFOB_001333"
     CDS             complement(3917..4585)
                     /gene="tenA"
                     /locus_tag="ACHFOB_001333"
                     /EC_number="3.5.99.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050334 - thiaminase activity [Evidence
                     IEA];
                     GO_process: GO:0006772 - thiamine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HFN5800120.1"
                     /translation="MMLFSNLIKENQKIWNAYLHHDFVKKLEDKSLKQENFLFYLKQD
                     YIYLLNYAKCYARLALNSNTAKELRFAMKFQNYIVEGEMELHRAILSLGINADELDAK
                     DESLVNIAYSRYMLSVGENGDFLDMLVALSACAIGYAKIGAEIINRLKNENLKDHPYK
                     EWILTYGSENFQNEAKEFEDFVNSYTSSVSAQKFQKLSEIFHTVTRLEVAFWEHSLRM
                     ELNL"
     gene            4695..4928
                     /gene="acpP"
                     /locus_tag="ACHFOB_001334"
     CDS             4695..4928
                     /gene="acpP"
                     /locus_tag="ACHFOB_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000036 - acyl carrier activity [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN5800121.1"
                     /translation="MATFDDVKAVVVEQLSIDADAVKMESKIIEDLGADSLDVVELIM
                     ALEEKFEVEIPDSDAEKLIKIEDVVNYIDNLKK"
     gene            4954..6168
                     /gene="fabF"
                     /locus_tag="ACHFOB_001335"
     CDS             4954..6168
                     /gene="fabF"
                     /locus_tag="ACHFOB_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HFN5800122.1"
                     /translation="MKRVVVTGIGMINALGLDKESSFKAICNGESGVNKITLFDATDF
                     PVQIAAEVKNFDPLEVVDGKEVKKIDRFIQLGIKAAREAMQDAGFNEELDKEEFGIVS
                     AAGIGGLPNIEKNSIICSERGPRKISPFFIPSALVNMLGGLISIEHGLKGPNISCVTA
                     CAAGTHAIGEAYKSIALGNAKKMLVIGAEAAICPVGIGGFASMKALSTRNEDPQHASR
                     PFDKERDGFVMGEGAGALVFEEYEEAKKRGATIYAELIGFGESADAHHITSPTLDGPL
                     RAMKKALNMAGNPKVDYINAHGTSTPVNDKNETAAIKELFGNNIPLISSTKGQTGHCL
                     GAAGAIEAVVSVMALRDGVVPPTINQLVKDDECDLDYVPNISRKVDLKVVMSNSFGFG
                     GTNGCVVFKKVD"
     gene            6170..7108
                     /gene="accA"
                     /locus_tag="ACHFOB_001336"
     CDS             6170..7108
                     /gene="accA"
                     /locus_tag="ACHFOB_001336"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009317 - acetyl-CoA carboxylase complex
                     [Evidence IEA];
                     GO_function: GO:0003989 - acetyl-CoA carboxylase activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HFN5800123.1"
                     /translation="MASYLDFEKNIQQIDEDIINAQIKGDTEAVSILKKNLEKEISKT
                     YKNLSDFQRLQLARHPDRPYALDYIELILNDAHEIHGDRAFRDDPAIVCFMGYLGEKK
                     IIVIGEQKGRGTKDKIARNFGMPHPEGYRKALRVARLAEKFQIPILFLIDTPGAYPGI
                     GAEERGQSEAIARNLYELSDLKIPTIAIVIGEGGSGGALAIGVADRLAMMKNSVFSVI
                     SPEGCAAILWNDPAKSEAATKVMKVTADDLKSQGLIDDVIDEPTNGAHRNKEAAAVAI
                     ADYVKKSLNELENIDVRELSANRMQKILKLGAYQEA"
BASE COUNT         2379 a          943 c         1498 g         2325 t
ORIGIN      
        1 ttgcaaggaa tagattatga tatattgcaa aaatttttta atatttattt tattatattc
       61 atctatcttc tttgattgct tatcttatgc ttttttatat ttattaaatt ataaatttgt
      121 ttttaatcca ttttatattg aaaggagagt ttgtttttgg atttttggca tgcggttatg
      181 taagattgac ttacattaaa aattattatt aattttttaa ataaggagaa tgatatgggt
      241 gaattttcta gaagagattt tataaaaaca gcctgtatta gtgtaggagc tttagctgca
      301 agttcaagtg gagtttatgc cttagatgat tcatctaaga tggataaaga tacaaattta
      361 ccttcttgtg atgttttggt aattggatca ggtggagcag gtttgcgtgc tgcagccgca
      421 gtgagaaaag aaaatccaaa attaagcgtt gtagtagcta caaagatgat gccatcgcgt
      481 aacgcaactt gtatggcaga gggtggaatt aatggagtta ctgatttttc taatggagat
      541 tcctataaat tacatgctta tgatactatt aaaggcggag cttatttggt agatcaagac
      601 gcggctttaa aattttgcga attagctgga aaggctattt ttaatatgga ttttatagga
      661 accttgtttt caagaaatga gcaaggtgga gtagctcagc gtttaatggg aggagcttct
      721 aagaaacgct gtaactattc tgcagataaa acaggtcata ttttaatgca ttcttgttta
      781 gatgatgcta ttagtagtgg tgtgaaattt ttaatggatc atgagctttt ggatataggt
      841 gttgtggatg gaaaatgcga gggtgtcgtt ttaagagata tacaaagcgg tggaatttat
      901 cctgtgttat gcaaagcttt ggtgattgct acagggggat atacaaggat attttataat
      961 agaacttcaa ctccttttat tgccacagga gatggcgtgg cagctgctct tagagcagga
     1021 cttggttttg aagatcccga gatgatacaa tttcacccaa caggagttgc aaatggtgga
     1081 actcttatta cagaagcggc gcgcggtgaa gggggatatc ttttaaataa tcgtggtgag
     1141 cgttttatga aaaattacca tgaaaaaatg gagcttgcac cgcgagatgt ggttgcgcgt
     1201 gctatagaaa cagaaattcg cgaaggtaga ggttatggtg agggacttgg agcttatgtt
     1261 ttgtgcgatg tacgccactt aggaaaagaa aaaattttaa aagatttacc aaaaattcgt
     1321 cacactgcaa tgctttttga aaatattgat ttagtagata ctcctgtacc tatccgtcca
     1381 acggcgcatt attctatggg tggaattgaa gtggctaaat ttgaagatat gagtactaaa
     1441 attgctggaa tttatgtagg tggagaagct tcttgtattt ctatacatgg agctaataga
     1501 ctagggggaa attctttagc cgatgcagtt gtaacggggc atttagcagg cattggtgcg
     1561 acaaattatg ccaaagatgc aagttttgga aaaggggcaa aaactcatga acttgctcaa
     1621 aaatggcagg ctagatttaa agaaattaca aataatggcg gaaatggtca agaaatgtat
     1681 gaattgcgag aagagttggg aagtcaaaat tgggataata tggggatttt tagaactcaa
     1741 gaaaaactcg atcttctagc aaaaaattta gaagatatac aagcaagata tgaaaaaatt
     1801 cgtattccaa atcctaatga agtgatgaat actgctttta cagattatgt agagcttggt
     1861 aatttgattt tactttctcg ctgtgcttgt ttagcagcta gaaatagact tgaaagtcgt
     1921 ggggctcata ctagagaaga ttatccaaag cgagatgata aaaatttctt aaaacatagc
     1981 attgtaaatt tagaaaatga tgaattaaaa cttagttata aagatgtcgt ggtaactgag
     2041 ttttcacttg atggaaggag agtacaatga aaatcatcat agatcgtttt aatggcaagg
     2101 aaaaatatga acaaagttat gatattgatg ataaggatat acaaggaaaa actctgctct
     2161 ctcttttgct ttttattaaa aaaacaaaag atattacttt gaattttacc gcctcttgtc
     2221 aatctgcgat ttgtggggct tgtgcagttc gtgtgaatgg gcattcttat cttgcttgtg
     2281 atactaaaat gcaagatttg ttaaaagaat atgataatcc ttcaagtata cgcatttctc
     2341 cgcttggaaa ttttagagta atttctgatt taattgtgga ttgggagcct tctatagaaa
     2401 atttaagaaa aattcgtcct gccatggtgg caaaaaatga attttcagcg gaaaagggct
     2461 gtaaacaaag tcaagaagaa tttgatcgta ttagcaagca atgggattgt attttatgtg
     2521 gtagctgtgc ttcagagtgt aataaattag aagcagatag tagcgattat atgcaacctt
     2581 ttgtttttac tcatgcttgg cgtgcagcgg cagactctcg aggtaaggat cctatgttgc
     2641 atgtaaaacc cagcgtaatg aatggacttt ggctttgtgt tcattgtcaa gagtgcgctg
     2701 atcgttgtcc aaagggtata agttcagtaa gtgatatagc aaatttaaga gtgatggcga
     2761 ttaaaaaagg tttaaatgaa ggcttagggc ctgatcatgc tgaagctttt tataaagatt
     2821 tagttgaagg ttcaggacgc ttgaatgaaa tttatcttgc tttacgttct gagggtgtta
     2881 taggttctat gggtaaaaca gatatagctt ttaaacttat gcgtgcagga aagatgaatc
     2941 ctatgcatgt ttttggcgag gatgaaatag aagggcataa agatttggtt aaaatgataa
     3001 aggcggcaca agaagctgct gttaaggagt aaaatatgca aaaagaatac gctttttttc
     3061 caggttgtgt tttatctcaa gctgcaaaag aatctaaaat ttcacttgaa gctattgcac
     3121 ctattttggg ttggaagttg aatgaaatta agggatggag ttgttgtggg gcttctcaag
     3181 cgcagtgtgt tgatcctatt gcgactttgg tagctaatgc aagaaatatt gctttagcag
     3241 aagagatgaa aatgccaatg cttacaactt gtagtacttg tatgctaact ttaactaaag
     3301 caaaaaatac tcttgataag ggtgcaaaag aacgcatcaa tactttttta gcaaaaggtg
     3361 gaatgaaata tcaaggttca acgcctatta caagtctttt gtgggagctt tatgaggatt
     3421 tggataattt aaaaagcaag gtgaaaaagc cgctttcaaa tttaaaagta gctttatttt
     3481 atggttgcca tagtttaaga cctgaagata ctttcggtaa aaaagaaagt tcaaccaatc
     3541 caaaaagttt tgaaagtgta gtagaagttt taggggctaa aatagttcct tttgaaaaac
     3601 gccttgattg ttgtggtttt catgcttctt atcctgcaga aaaatctgtg aaaaaaatgt
     3661 ctagtcaaat tgtcaataat gcaagcgaaa atcaagctga ttgtgttgta acaccttgtc
     3721 cactttgtca aatgcagctt gatatctatc aagaaagatt tcaagattat actaattcta
     3781 aagcaagatt gcctattatt catttatcac aattagtagg acttgcatta ggactttcta
     3841 aagaaatggt tggtttagat tataatatta ttgatgcaag taaaattgca taaaaacatg
     3901 ggcaaaaagc ccatgtttaa agatttaatt ccattcttaa agaatgctcc caaaaagcca
     3961 cttccaagcg tgttacagta tgaaaaattt cgctgagttt ttggaatttt tgtgcactaa
     4021 cacttgaagt ataagaatta acaaaatctt caaattcttt agcttcattt tgaaaatttt
     4081 cacttccata ggtcaaaatc cattccttgt aaggatgatc ttttaaattt tcatttttta
     4141 aacgatttat aatttcagca cctatttttg catagcctat agcgcaagca ctaagagcaa
     4201 ctagcatatc taaaaaatct ccattttcac ctacgcttaa catataacgc gaataggcta
     4261 tattgactaa actttcatct tttgcatcga gttcatctgc attaatgcca agagatagaa
     4321 ttgcacgatg aagttccatt tctccttcaa ctatataatt ttgaaatttc atagcaaaac
     4381 gaagttcttt tgcagtattt gagttaagtg ctaatcttgc ataacatttt gcgtaattaa
     4441 gcaaataaat ataatcttgc ttgagataaa aaagaaaatt ttcttgcttt aggcttttat
     4501 cttccaattt tttaacaaaa tcatgatgta gataagcatt ccaaattttt tgattttctt
     4561 tgattaaatt agagaaaagc attatttttc ctttatgttt taatatttta ttttcaagta
     4621 taatgaaaaa ctataaatat tttaagcttt ttatagtaaa atacgcttta ttttaatttt
     4681 ttgaaggaga acaaatggca acatttgatg atgtaaaagc agtagtagta gagcaattaa
     4741 gtattgatgc agatgcagtt aaaatggaat caaaaattat tgaagattta ggtgctgatt
     4801 ctttagatgt tgtagagctt attatggctt tagaagaaaa atttgaagta gaaattccag
     4861 atagtgatgc tgaaaaatta attaaaattg aagatgttgt aaattatatt gacaatctaa
     4921 aaaaataatt tttttcttgc aaggagctta ttcttgaaaa gagttgtagt tacaggtatt
     4981 ggtatgatca atgcccttgg tttagataaa gaaagttcat ttaaagcaat ttgcaatgga
     5041 gaaagcggag taaataaaat tactcttttt gatgccacag actttcctgt tcaaattgca
     5101 gctgaagtta aaaattttga tccattagag gttgttgatg gcaaagaagt aaaaaaaatt
     5161 gaccgtttca tacaacttgg aattaaagca gcaagagaag caatgcagga tgctggattt
     5221 aacgaagaat tagacaaaga agaatttggc attgtttcgg ctgctggtat tggaggtttg
     5281 cctaacatag aaaaaaattc cattatttgt tccgagcgag gtccgcgtaa aatttcccct
     5341 tttttcatac cttcagcgct tgtaaatatg ttaggaggtt tgatttctat agagcatgga
     5401 cttaaagggc caaatatttc ttgtgttaca gcttgtgcag caggaactca tgctatagga
     5461 gaagcttata aaagtatagc tttgggaaat gctaaaaaga tgttagtcat aggtgcagaa
     5521 gctgcgattt gtcctgtggg tataggtggt tttgcttcaa tgaaagcttt atcaactaga
     5581 aatgaagatc cacagcatgc ttcaagacca tttgacaaag aaagagatgg ttttgtcatg
     5641 ggagaaggtg ctggagcttt agtttttgag gaatatgaag aggctaaaaa acgcggtgct
     5701 acaatttatg ctgaattaat tggatttgga gaaagtgcag atgcacatca tattacttca
     5761 ccaactttag atgggccttt aagagctatg aaaaaagctt taaatatggc agggaatcca
     5821 aaggtagatt atatcaatgc acatggaact tcaacccctg taaatgacaa aaatgaaaca
     5881 gcagcaatta aagagctttt tggcaataat atcccgctta taagttccac caaaggacaa
     5941 acaggtcatt gcttgggtgc tgcaggtgca attgaagcag ttgttagtgt tatggcttta
     6001 agagatgggg tagttccacc tacaatcaat cagcttgtaa aagatgatga atgtgatctt
     6061 gattatgttc caaatatatc aagaaaagta gatttaaaag tggtgatgag taattctttt
     6121 ggttttggtg gcacaaatgg ctgcgttgta tttaaaaaag tagattaata tggcttctta
     6181 tttggatttt gaaaaaaata ttcagcaaat tgatgaagac attatcaatg ctcagattaa
     6241 aggagatact gaagctgtat cgattttaaa gaaaaatctt gaaaaagaaa tttctaaaac
     6301 ttataagaat ttaagcgatt ttcaacgttt gcaattagcg cgtcatccag atcgccctta
     6361 tgctcttgac tatattgaac ttattttaaa tgacgctcat gaaatacatg gtgatcgtgc
     6421 ctttagagat gatcctgcta ttgtttgttt tatgggttat ttaggagaga aaaaaataat
     6481 tgtaattggt gagcaaaaag gacgtggaac aaaagataaa atcgctagaa attttgggat
     6541 gccacatcct gaaggatatc gtaaagcctt aagagtagca agacttgcag agaaatttca
     6601 aattcctatt ttatttttga tagatactcc aggtgcttat cctggaatag gtgctgaaga
     6661 aagagggcaa agtgaagcta tcgctagaaa tttatatgaa ttaagtgatt tgaaaatacc
     6721 gaccattgct atagttatcg gagaaggcgg tagtggcggg gcgttagcta taggggttgc
     6781 agatagactt gcaatgatga aaaattctgt tttttcagta atttctcctg aaggttgtgc
     6841 tgcaatactt tggaatgatc ctgcaaaaag tgaagctgca accaaggtta tgaaggtaac
     6901 ggctgatgat ttaaaatctc aaggtttaat tgatgatgtt atagatgagc ctacaaatgg
     6961 tgcacatcgt aataaagaag ctgcagcagt agctattgct gattatgtaa aaaaatctct
     7021 aaatgaactt gaaaatattg acgtacgaga actttctgca aatcgtatgc agaaaatttt
     7081 aaagcttgga gcctatcaag aggcttaggc ttttacttcg cttttttaaa taattttatt
     7141 attta
//
LOCUS       DAZBIH010000078         7103 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.079, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000078 DAZBIH010000000
VERSION     DAZBIH010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7103)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7103)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7103
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.079"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            170..883
                     /locus_tag="ACHFOB_001337"
     CDS             170..883
                     /locus_tag="ACHFOB_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0061077 - chaperone-mediated protein
                     folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone"
                     /protein_id="HFN5800124.1"
                     /translation="MGALMDLEKLRLARSLYYQCLGELFVFSFSEERLSKLQEYLKTM
                     QECLFDENLKSNFDILLKHLDDENSIQAFFKEYDLLFLSLKNSIPTTFSYIEEGFENS
                     NPLLCVRQILVKSKIRRNEKFFKESEDSVGFCLLLMSEFLRQNEDDLAKELFEKVINK
                     SIDEFLGDVFMNKNANLYKEIASIASAFMEFERLCFEVEKPAKINSKKVQNDLSRSEF
                     LRREANKQRRTREKSQGIS"
     gene            858..1049
                     /locus_tag="ACHFOB_001338"
     CDS             858..1049
                     /locus_tag="ACHFOB_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocation signal
                     domain-containing protein"
                     /protein_id="HFN5800125.1"
                     /translation="MKNRREFLKKSAFALGAAGVLGSTTLALAKDEERKDLVKGKSKK
                     KEVLFQRSANWEKYYIKAE"
     gene            1049..3853
                     /locus_tag="ACHFOB_001339"
     CDS             1049..3853
                     /locus_tag="ACHFOB_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_except=(pos:1589..1591,aa:Sec)
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HFN5800126.1"
                     /translation="MSSVGENIKLTRRSFLKMAALSSLATPLLARSETLREASADELK
                     EAYEGSKKVKTVCTACSVGCGIIAEVQNGVWVRQEIAQDHPVSSGGHCCKGSDMIDMV
                     RSHVRLKYPMKKENGEWKRISYEQALSEIGEKLAAYRKENPESVMFLGSAKMSNEQAY
                     YVRKFAAFFGTNNVDHQARIUHSATVAGVANTFGYGAMTNHLGDIQRSKCIIIIGANP
                     AVNHPVGFRHFLKAKEKGAKLIVVDPRFTKSAAKADIYARIRPGTDIAFMYGMLKIIF
                     DEGLEDTKYLDERVFGIDKIREEAAKWTAEEVENVTGISKELLVQITHEVAKNKPTTL
                     IWAMGLTQHTVGTSNTRLAPIVQMVLGNIGKFGGGVNILRGHDNVQGASDMACLSENL
                     PGYYPLNEATWRYYAKIWGVDYEWLLGNFVSKDWMHKTGLSLARWWAAALNGKDGNDA
                     IDNAGTPLKALVVMGNGITSTAQQVKVKEGLEALELLVLADPFVNEAGIIAERKDGIY
                     LLPAATQFETSGSVTATNRSGQWRFKVVDPLYESMEDQEILFELAKKLGFYEDFTKTL
                     RDEKGEIVWPENATREIAKAVRSIGLNGWSPERLKKHTLYWDKFDEVTLEGKDEVAGE
                     YYGLPWPCWSDKHPGSPVLYNTDIEVAKGGMGFRNNFGLEYEGESLLAKNAPLNSPID
                     TGYPQITKDNIEKVLGITLSAQEKEKMGSTWSYDDSNIIATKCIEKGIVPYGNAKARA
                     VVWTFKDKIPLHREPLHSPRNDLVQKYPSFEDQKALYRVDTKFVSVQQAKDYSKEFPL
                     NLVTARLVNLNGAGMENRASMYLTRLTPEMFCEINPELAKEQDIKAGDMIWVHSPEGT
                     KIHVRVKVNPGVAKDMIFLPFHFTGVMQGVDLTHNFPEGTKPYASGESANTVTNYGYD
                     IMCQIPETKGGLCRISKDGK"
     gene            3850..4491
                     /gene="fdh3B"
                     /locus_tag="ACHFOB_001340"
     CDS             3850..4491
                     /gene="fdh3B"
                     /locus_tag="ACHFOB_001340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase FDH3 subunit beta"
                     /protein_id="HFN5800127.1"
                     /translation="MNKVNFANLEKERLKFFCDNERCIDCNGCAVACDEAHELPIHIR
                     RRRVITLNEGIQGKEVSTSISCMHCDDAPCSIVCPVDCFYIRADGIVLHDKEICIGCG
                     YCLYACPFGAPQFPKDSVFGNKGIMDKCTMCAGGPEATNSEKERELYGQNRIAEGKVP
                     VCAAMCSTKALLVGESSKIEEIYHNRLMNRNYGIPNPSESLEWKIAYTGKERL"
     gene            4488..5420
                     /locus_tag="ACHFOB_001341"
     CDS             4488..5420
                     /locus_tag="ACHFOB_001341"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009326 - formate dehydrogenase complex
                     [Evidence IEA];
                     GO_function: GO:0008863 - formate dehydrogenase (NAD+)
                     activity [Evidence IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_process: GO:0009061 - anaerobic respiration [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit gamma"
                     /protein_id="HFN5800128.1"
                     /translation="MRKVFVTLLLSVVSLFAYGSERMGQDTQIWDFHRITNIPNYDTF
                     GKLWTTLQGEYIATIALIAVIAVLSAFALHYMVIGPKQFSHDGKKIYAFTLFERLFHF
                     IAAISWVILVPTGFVMMFGATFGGGLFVRVCKNLHAFATVLFIISIIPMFLWWIKRML
                     PASYDIRWMMIVGGYLSKIKRPVPAGKFNFGQKSWYYIAVFGGFLMIITGGFMYFLDF
                     NSTAIQGLFGLTQIELLRISAIVHNFLGIVCAVFFGVHIYMAVFAIKGSIHSMISGYK
                     EEEEVYILHSYWYKELSNKKQIEPSFSYDPNVKI"
     gene            5587..6369
                     /gene="fdhD"
                     /locus_tag="ACHFOB_001342"
     CDS             5587..6369
                     /gene="fdhD"
                     /locus_tag="ACHFOB_001342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HFN5800129.1"
                     /translation="MDPLFTTQILKYKGNDSFTCDDTLVREIKLEIFINNERVGALMA
                     TPVDEQALAIGYLMSENIIAKVSDIESIETKDDGMSVHIKAKIDKENLAKLNAEGVVI
                     SGCGRAHTANIDPEAIEASKISSDAKFSKDEILKQMSTFYTQCELYEKTGCVHTAKLF
                     VDEKTFFIGEDIAQHNTIDKALGKARLAGVDLSQCFLMVSGRLSSEMVAKAVMHKISV
                     LVSRTAPTCLGVMIARKFDLTLCGFARENKINIYSGEFRIHG"
     gene            6362..7099
                     /locus_tag="ACHFOB_001343"
     CDS             6362..7099
                     /locus_tag="ACHFOB_001343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HFN5800130.1"
                     /translation="MDKNQEKEIISYMRELLNSNEKLDCGTAFKIAKKFNVNIEKIGQ
                     LADENHMRIDNCELGQFGHLDFEKAKIEVLKKIEPSLDEKRRIFCKDARDIAKEGCGL
                     KSMRSALKAYKVDVKYCQLGCFKEKKGKQFIVRTKTWIENADGDLLFGRGKTELLELI
                     GQTGSLLHASKLMGINYKKAWMHLQTLQKNSQEILVSTRQGRSKESGTKLTPRALELM
                     ENYSILQKDIEEYANKRFKELFLKGKK"
BASE COUNT         2466 a          883 c         1488 g         2266 t
ORIGIN      
        1 ttttaagatt ttaaatcctt gtggaatttt attgaaattc agtgattttt aaatcaaata
       61 gtattaagat aaatcgattt aaaaatcggc tttaaaatga atattaggta tattttgcat
      121 aatattcatt caagcaaaat ttaaagctat ttttgaaaat tttgaatgca tgggggcttt
      181 aatggatttg gaaaaattaa gattagctag aagtctttat tatcaatgtc taggagagct
      241 ttttgttttt tcattttctg aagaaagatt gtcaaaatta caagagtatt taaagacaat
      301 gcaagaatgt ttatttgatg aaaatttaaa atcaaatttt gatatcttgc ttaagcattt
      361 agatgatgaa aattctatac aagcattttt taaagaatac gatttgcttt ttttaagtct
      421 taaaaacagc attccaacga ctttttctta catagaagaa ggttttgaaa attcaaatcc
      481 tttactttgt gtgcgtcaaa ttttagtcaa aagtaaaata agacgcaatg aaaaattttt
      541 taaagaaagt gaagatagtg ttggattttg tttattgttg atgagtgaat ttttaaggca
      601 aaatgaagat gatttagcca aagagctttt tgaaaaagtg atcaataaaa gcattgatga
      661 gtttttaggc gatgttttca tgaataaaaa tgcgaattta tataaggaaa ttgcaagtat
      721 tgcatcggct tttatggaat ttgaaagact ttgctttgaa gtggaaaaac ctgcaaaaat
      781 aaattctaaa aaagtgcaaa acgatctatc gcgttcagaa tttttaagaa gagaagcaaa
      841 taaacaaagg aggactcgtg aaaaatcgca gggaatttct taaaaaatcc gcttttgcct
      901 taggggctgc tggagtgctt ggtagcacga ctttagctct agctaaagat gaagaaagaa
      961 aagatttggt taaaggtaaa agtaagaaaa aagaagtgct ttttcaaaga agtgctaatt
     1021 gggaaaaata ttatataaag gctgagtaat gtcaagtgta ggtgaaaata tcaagcttac
     1081 gcgtcgttct tttcttaaaa tggcagcact ttcaagccta gcaacaccgt tgcttgctag
     1141 aagtgaaact ttaagagaag cgagtgctga tgagcttaaa gaagcgtatg aaggtagtaa
     1201 aaaagtaaaa acagtttgta cagcctgttc tgtaggctgt gggattattg cagaagtgca
     1261 aaatggtgtt tgggtgcgtc aagaaattgc tcaagatcat cctgtgagtt caggtggaca
     1321 ttgctgcaag ggatctgata tgatcgatat ggtgcgttca catgtgcgtt taaaatatcc
     1381 tatgaaaaaa gaaaatggag aatggaaacg cataagttat gagcaagctt taagtgagat
     1441 tggagaaaaa ctagctgctt atcgtaaaga aaatcctgaa agtgttatgt ttttaggttc
     1501 tgcaaaaatg agcaatgaac aagcttatta tgtgcgtaaa tttgcagcgt tttttggaac
     1561 aaacaatgta gatcatcaag ctagaatttg acacagcgca acagtcgccg gtgtggcgaa
     1621 tacatttggt tatggcgcta tgacaaacca tcttggagac attcaaagaa gtaaatgtat
     1681 cattatcatt ggggcaaatc cagcggtaaa tcatcctgtg ggttttagac acttcttaaa
     1741 agcaaaagaa aaaggtgcaa agcttatcgt tgtagatcct agatttacaa aaagtgcggc
     1801 aaaagcggat atttatgcaa gaattcgtcc aggaactgac attgctttca tgtatggaat
     1861 gctaaaaatc atctttgatg aaggcttaga agatacaaaa tatcttgatg aaagagtttt
     1921 tggaattgat aaaattcgtg aagaagcagc aaaatggaca gctgaagaag tagaaaatgt
     1981 tacagggatc tctaaagaac ttttggtgca aatcactcac gaagtagcta aaaacaaacc
     2041 aactacgctt atttgggcta tgggtttaac tcaacacact gtaggaactt caaatacacg
     2101 tttagcacct attgtgcaaa tggtacttgg aaatataggt aaatttggtg gtggagttaa
     2161 tatcttacgc ggacacgata atgttcaagg tgcttcagat atggcttgtt tgagtgaaaa
     2221 tttaccaggt tattatcctt taaatgaagc gacttggaga tactatgcca aaatttgggg
     2281 cgtggattat gagtggcttt taggaaattt tgtaagcaaa gattggatgc ataaaaccgg
     2341 actttcactt gctagatggt gggcagcggc tttaaatgga aaagatggca atgatgctat
     2401 cgataatgca ggaacgcctt taaaagcttt agtagttatg ggaaatggta tcacttcgac
     2461 tgcacaacaa gtaaaagtta aagaaggttt ggaagcttta gagcttttag ttttagctga
     2521 tccttttgta aatgaagcag ggattattgc agaaagaaaa gatggaattt atcttttacc
     2581 tgcagcaaca cagtttgaaa caagcggaag tgtaacagca acaaatcgta gcggacaatg
     2641 gagatttaaa gttgtagatc cactttatga aagcatggaa gatcaagaaa ttttatttga
     2701 gcttgctaaa aaattaggct tttatgaaga ctttactaag actttacgcg atgaaaaagg
     2761 tgagattgtt tggcctgaaa atgcaacaag agaaattgca aaagcggtta gaagtatagg
     2821 gcttaatggt tggagtcctg aaaggcttaa aaagcatact ttatactggg ataaatttga
     2881 tgaggtaact ttagaaggaa aagacgaagt tgctggcgag tactacgggc ttccttggcc
     2941 ttgttggagt gataagcatc caggttctcc tgtgctttat aataccgaca ttgaagtcgc
     3001 aaaaggtggt atgggcttta gaaacaattt tggacttgag tatgaaggag agagtttact
     3061 tgctaaaaat gcgcctttaa attcacctat tgatacaggt tatccacaaa ttactaaaga
     3121 taatatagaa aaagttttag gcattacttt aagtgcccaa gaaaaagaaa aaatgggatc
     3181 aacttggtct tatgatgata gcaatatcat agcaactaaa tgtatagaaa aaggcatagt
     3241 tccttatgga aatgctaaag ctagagctgt agtttggact tttaaagata aaattccact
     3301 ccaccgtgag cctttacatt ctccaagaaa cgatttggtg caaaaatatc caagttttga
     3361 agatcaaaaa gcgctttacc gcgtggatac taaatttgtg tctgtgcaac aagctaagga
     3421 ttattctaaa gaattcccac ttaatcttgt tactgcaaga cttgtgaatt taaatggtgc
     3481 aggtatggaa aatagagcat ctatgtatct aacgcgttta acacctgaaa tgttttgtga
     3541 gatcaatcct gaattagcaa aagagcaaga cattaaagca ggagatatga tttgggtaca
     3601 ttctccagaa ggtactaaaa ttcatgtaag agtgaaggtt aatccaggtg tagcaaaaga
     3661 tatgattttc ttgcctttcc attttacagg agttatgcaa ggcgtggatt taacgcacaa
     3721 tttcccagaa ggaactaagc cttatgcaag cggagaaagt gctaatacgg taacaaatta
     3781 tggttatgat atcatgtgtc agattccaga gactaaaggt gggctttgta gaatcagtaa
     3841 ggatggaaaa tgaataaggt aaattttgca aatttagaaa aagaacgctt gaaattcttt
     3901 tgtgataatg agcgttgtat tgattgtaat ggttgtgcgg tagcttgtga tgaagcacat
     3961 gagcttccta ttcatattcg ccgccgccgt gtgattactt taaatgaagg aattcaagga
     4021 aaagaagttt caacttctat ttcttgtatg cattgtgatg atgctccttg ttctatcgtt
     4081 tgtcctgtgg attgttttta catccgtgct gatggtattg ttttgcatga taaagaaatt
     4141 tgcataggtt gtggatattg tctttatgct tgtccttttg gtgcaccaca atttccaaaa
     4201 gatagtgttt ttggaaataa aggcattatg gataaatgta ctatgtgtgc aggtggccct
     4261 gaagcaacga attcagaaaa agaaagagaa ctttatggtc aaaatcgtat cgcagaagga
     4321 aaagttcctg tatgtgctgc gatgtgttcg acaaaagcac ttttagtagg tgaaagttct
     4381 aaaatagaag agatttatca taatagactt atgaatagaa attatggcat tccaaatcct
     4441 tcggaaagtt tggaatggaa gattgcttac acaggaaagg aacgcttatg agaaaagtat
     4501 ttgtaacgct tttgttaagc gtggtaagtt tatttgctta tggtagcgag agaatgggac
     4561 aagatactca aatttgggat tttcatcgta ttacaaatat cccaaattat gatacttttg
     4621 gcaaactttg gacaactttg caaggtgaat atatagctac tatagcttta atcgctgtta
     4681 ttgcggtatt atctgcattt gctttgcatt atatggttat aggacctaag caattttcac
     4741 acgatggaaa gaaaatttat gcttttacat tatttgaaag actttttcat tttatcgcgg
     4801 caatttcttg ggtgatttta gtgccaactg gttttgtgat gatgtttggg gcgacttttg
     4861 gaggcggact ttttgtaagg gtttgtaaaa atttacatgc ttttgcaacg gttttattta
     4921 tcatctctat aatccctatg tttttatggt ggattaaaag aatgcttcct gcaagttatg
     4981 atatcagatg gatgatgata gtaggtggtt atttaagtaa aatcaaacgt cctgtacctg
     5041 caggtaagtt taattttggt caaaaatctt ggtattatat agccgtattt ggtggatttt
     5101 tgatgataat tacaggtgga tttatgtatt ttcttgattt taattccaca gcaattcaag
     5161 gtctttttgg tttaactcaa attgaacttt taagaatttc agctatagtg cataatttct
     5221 tgggtatagt gtgtgcagtg ttttttggcg tgcatattta tatggcagta tttgcaatca
     5281 aaggcagtat ccattctatg attagtggtt ataaagaaga agaagaggtt tatattttac
     5341 attcttattg gtataaagaa ttaagcaata aaaagcaaat tgaacctagt ttttcttatg
     5401 atcctaatgt aaaaatttaa tctttaaccg ctatgttatt gcatagcggt agttttaagc
     5461 ttttttgaaa taaatagaac gaattttatt ttataagttg aatctaaaat ctatttttcc
     5521 atatataaat ttgttattta tgtttttttg atataatatt atttaaagat atttaaagga
     5581 taaggtatgg atccgttatt tacaactcaa attttaaaat ataaaggtaa tgattctttt
     5641 acatgtgatg atactttagt gcgtgaaatt aaacttgaaa tttttattaa taatgaaaga
     5701 gtaggtgctt taatggcaac tcctgtagat gaacaggcat tagcaatagg atatttaatg
     5761 agcgaaaata tcattgcgaa agtaagcgat attgagagca tagaaacaaa agatgatggt
     5821 atgagtgtgc atattaaagc aaagattgat aaagaaaatt tagcaaagct taatgctgaa
     5881 ggtgtagtta taagtggttg cggtagagca catactgcca atatcgatcc agaagctatt
     5941 gaagcgagca aaattagttc tgatgcaaaa tttagcaaag atgaaatttt aaaacaaatg
     6001 agtacttttt atactcaatg cgagctttat gagaaaacag gctgtgtaca tacggctaag
     6061 ctttttgtag atgagaaaac tttttttata ggtgaagata tagctcagca taataccata
     6121 gataaagctt taggaaaagc acgtttagct ggggttgatt taagtcaatg ttttttaatg
     6181 gttagtggaa ggctaagttc tgaaatggta gctaaagcag ttatgcataa aatttcagtg
     6241 cttgtttcac gcacggctcc tacttgttta ggagttatga tagcaagaaa atttgattta
     6301 acgctttgtg gttttgctag agaaaataag attaatattt atagtggaga atttagaatt
     6361 catggataaa aatcaagaaa aagaaatcat ctcatatatg agagaattgt taaatagtaa
     6421 tgaaaaatta gattgtggta cggcttttaa aattgcaaag aaatttaatg taaatataga
     6481 aaaaatcgga caattagccg atgaaaatca catgagaatt gataattgcg agttggggca
     6541 atttggacat ttagattttg aaaaagcaaa gattgaagtg cttaaaaaaa tagaacctag
     6601 tttagatgaa aagcgtagaa ttttttgtaa agatgcaaga gatattgcta aagaaggttg
     6661 tgggcttaaa agtatgcgtt cagctttaaa agcttataag gttgatgtaa agtattgtca
     6721 acttggttgt tttaaagaaa aaaaaggtaa gcaatttata gtaagaacaa aaacttggat
     6781 tgaaaatgcg gatggagatt tgctttttgg acgaggaaaa acagaacttt tagaacttat
     6841 cggacaaaca ggtagtttat tgcatgcttc taaacttatg gggattaatt ataaaaaagc
     6901 ttggatgcat ttacaaacct tacaaaaaaa ttctcaagaa atcttagtta gcacaaggca
     6961 aggacgctct aaagaatcag gaacaaaact tactcctaga gctttggaat taatggaaaa
     7021 ttactctatt ttacaaaaag atatagaaga atacgctaat aaacgcttta aagaactatt
     7081 tttaaaagga aaaaaataaa tct
//
LOCUS       DAZBIH010000079         7008 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.080, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000079 DAZBIH010000000
VERSION     DAZBIH010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 7008)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7008)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7008
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.080"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            19..825
                     /gene="cdtA"
                     /locus_tag="ACHFOB_001344"
     CDS             19..825
                     /gene="cdtA"
                     /locus_tag="ACHFOB_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtA"
                     /protein_id="HFN5800131.1"
                     /translation="MQKIIVFILCCFMTFFLYACSSKFENVNPLGRSFGEFEDTDPLK
                     LGLEPTFPTNQEIPSLISGADLVPITPITPPLTRTSNSANNNAANGINPRFKDEAFND
                     VLIFENRPAVSDFLTILGPSGAALTVWALAQGNWIWGYTLIDSKGFGDARVWQLLLYP
                     NDFAMIKNAKTNTCLNAYGNGIVHYPCDASNHAQMWKLIPMSNTAVQIKNLGNGKCIQ
                     APITNLYGDFHKVFKIFTVECAKKDNFDQQWFLTTPPFTAKPLYRQGEVR"
     gene            822..1619
                     /gene="cdtB"
                     /locus_tag="ACHFOB_001345"
     CDS             822..1619
                     /gene="cdtB"
                     /locus_tag="ACHFOB_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin nuclease subunit
                     Cj-CdtB"
                     /protein_id="HFN5800132.1"
                     /translation="MKKIICLFLSFNLAFANLENFNVGTWNLQGSSAATESKWSVSVR
                     QLVSGANPLDILMIQEAGTLPRTATPTGRHVQQGGTPIDEYEWNLGTLSRPDRVFIYY
                     SRVDVGANRVNLAIVSRMQAEEVIVLPPPTTVSRPIIGIRNGNDAFFNIHALANGGTD
                     VGAIITAVDAHFANMPQVNWMIAGDFNRDPSTITSTVDRELANRIRVVFPTSATQASG
                     GTLDYAITGNSNRQQTYTPPLLAAILMLASLRSHIVSDHFPVNFRKF"
     gene            1630..2198
                     /gene="cdtC"
                     /locus_tag="ACHFOB_001346"
                     /pseudo
     CDS             1630..2198
                     /gene="cdtC"
                     /locus_tag="ACHFOB_001346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343539.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cytolethal distending toxin subunit Cj-CdtC"
     gene            2370..4052
                     /locus_tag="ACHFOB_001347"
     CDS             2370..4052
                     /locus_tag="ACHFOB_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate permease"
                     /protein_id="HFN5800133.1"
                     /translation="MEQILTWQQIYDPFSNIWLSALVAFLPILCFLVCLVVLKLKGYQ
                     AGFLTVILATLVALFAYKMPWNLVGASFIQGFTNGMWPIAWIIIAAIFLYKLSIKSGS
                     FEIIKKSVMSITPDHRIQVILIGFCFGSFLEGAIGFGGPVAITAALLVGLGLRPLQAA
                     GLCLIANTAPVAFGAVGIPIIAMANLVGIEQHSVSAMVGRMLVPLSLTIPFFIVFLMD
                     GFKGIKETFPAILVAALSFTTTQFLSSNHLGAELPDIISAVVSLAVTTVFLKFWKPKN
                     IFRFDNESNFTQDNTLSFNQILKAWSPFILLIVCIIIWTQPWFKALFDKDGILSYTSI
                     TLQFSNITTGILSPSITGIGEAKPLSLALGVDLINGKTVAQAGTAILLAAFLTIAILK
                     IKAEDAAECFWVTLKEMAIPCITIGLVVAFAFISKNSGMSTTLGLAFAHTGDAFSFFS
                     PIIGWIGVFLTGSDTSANLLFGTLQQVSAQKLGISEALFLAANSVGGVVGKMISPQSI
                     AIACAAVGLVGKESDLFKFTLKYSVAFIILIGIWTCIIAFFLQGIIPEVIVK"
     gene            4175..4915
                     /locus_tag="ACHFOB_001348"
     CDS             4175..4915
                     /locus_tag="ACHFOB_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="(Fe-S)-binding protein"
                     /protein_id="HFN5800134.1"
                     /translation="MMKKVYFYATCLGSAAMQQSVLNAIKLLRREGIEVIFKKNQTCC
                     AQPSFNSGYFDESREIALYNVDLFDKDYPIVVPSGSCAGMMSHDYKELFKNRPEFSKI
                     KTFSPRVIELSQYLDEVLKVDYEDKGAPIKVTWHSNCHALRVQKSIQASKNLIKKLKN
                     VELVELQYEEECCGFGGTFSVKEPEISNAMVRSKIKDIQNSGAKYLISGDGGCLLNID
                     GTMKRMGLDIKGIHLYDFLLKRLEGERL"
     gene            4912..6351
                     /locus_tag="ACHFOB_001349"
     CDS             4912..6351
                     /locus_tag="ACHFOB_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0019516 - lactate oxidation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LutB/LldF family L-lactate oxidation iron-sulfur
                     protein"
                     /protein_id="HFN5800135.1"
                     /translation="MSQKIPHEQIVQIKLNDKQMQENLMTAMHTLQKNRLNVIDARFK
                     DWQGLRAKAKQAKNNALMSLEERLLEFEKNATKNGIKVHWASSDEDACEIVYEIMKEK
                     NITKLLKGKSMASEEIGLNHYLEKKGLKAIETDLGELILQLNEEPPLHIVVPAIHRNR
                     HEIGEIFKEKLGANLENDEPESLNAVAREHLRKDFEGLKLGLSGVNFAMSREGAFWLI
                     ENEGNGRMCTTAPDIHIALCGIEKVMESFEDAATMVSLLTPSATGQFIPTYNNIITGP
                     RKNGDLDGPKEVHVILFDHNRSKMLAHEDYYEALRCIRCGACMNFCPVYDQIGGHAYQ
                     TTYPGPIGEVISPNIFGIDHTGDILNFCSLCGRCSEVCPVQIPLADLIRKLRCDKIGQ
                     GKNPPLGANNVHHNALEAFAFKQFKNIATNGDKWRFSLSKAHYFNWTVQNFASILPVI
                     KKWYAFKELPQIKMDLYKEVQKLEGVSYE"
     gene            6344..7000
                     /locus_tag="ACHFOB_001350"
     CDS             6344..7000
                     /locus_tag="ACHFOB_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactate utilization protein C"
                     /protein_id="HFN5800136.1"
                     /translation="MSKIDEISSKSKANILEHLKKAYKETTFTRIESIDPVEHIQTTQ
                     DMLTEMKQKMSDNKYIVENATKDTLEEKINEIVAKYGFKSMIYGADLNLNLEQIKAEK
                     KICFDKEIENLRSEVFHSDFSIIHARAGVSSHGVALIPSSKTQPRMLSLAPKLCIVLL
                     KKENVVKSLSEALNLVKKENEILPTNILFIAGPSRTADIELITVFGVHGPQIAHIIIY
                     "
BASE COUNT         2370 a         1095 c         1243 g         2300 t
ORIGIN      
        1 tacatatcaa ggtttttaat gcaaaaaatt atagttttta ttttatgttg ttttatgact
       61 ttttttcttt atgcatgttc ttctaaattt gaaaatgtaa atcctttggg gcgttcattt
      121 ggagaatttg aagatactga tcctttaaaa ctaggacttg aacctacttt tcctaccaat
      181 caagaaattc caagtttaat tagcggtgct gatttagtac ctattactcc tattacccca
      241 cctttaacta gaacaagcaa tagtgccaac aataatgcag caaatgggat caatcctcgc
      301 tttaaagacg aagcttttaa tgatgtttta atttttgaaa atcgccctgc ggtttctgat
      361 tttttaacca ttttaggccc tagcggagca gctttaacgg tttgggcttt agcacaagga
      421 aattggattt ggggctatac tttaatcgat agcaaaggat ttggcgatgc tagagtttgg
      481 caacttttgc tttatcctaa tgattttgca atgattaaaa atgccaaaac caatacttgt
      541 cttaatgctt atggtaatgg aattgtccat tatccttgtg atgcaagcaa tcacgcacaa
      601 atgtggaaac ttatccctat gagcaataca gcggttcaaa ttaaaaattt aggaaatgga
      661 aaatgcatac aagcacctat tacaaatctt tatggtgatt ttcacaaggt ttttaaaatt
      721 tttaccgtag agtgtgcaaa aaaagataat tttgatcaac aatggttttt aactactcca
      781 ccttttaccg caaaaccttt atatcgccaa ggagaggtac gatgaaaaaa attatatgtt
      841 tatttttatc ttttaacctt gcttttgcaa atttagaaaa ttttaatgtt ggcacttgga
      901 atttgcaagg ctcatccgca gccacagaaa gcaaatggag tgttagtgta agacaacttg
      961 taagtggagc aaacccctta gatatcttaa tgatacaaga agcaggaact ttaccaagaa
     1021 cagccactcc aacaggacgc catgtgcaac aaggtggaac acctattgat gaatatgagt
     1081 ggaatttagg aactctttca aggcctgata gggtttttat ttattattct cgcgttgatg
     1141 taggagctaa tcgtgtaaat ttagctatag tttcaagaat gcaagctgaa gaagtgattg
     1201 ttttacctcc acctactaca gtttcaagac ccattatagg aattcgcaat ggaaatgatg
     1261 cttttttcaa tatccatgct ttagctaatg gaggaacaga tgtaggagca attatcacag
     1321 ctgtagatgc acattttgca aatatgcctc aagttaactg gatgatagca ggggatttta
     1381 accgtgatcc ttctactata acaagtacag tggatagaga attagcaaat agaattagag
     1441 tggtttttcc aactagcgca actcaagcaa gcggagggac tcttgattat gcaattacag
     1501 gaaattcaaa tagacaacaa acctatactc caccgctttt agctgcgatt ttaatgcttg
     1561 caagtttaag atctcatata gtttcagatc attttccagt aaattttaga aaattttagg
     1621 acatttaata tgaaaaaaat tattactttg ttttttatgt ttataacttt agcctttgca
     1681 actcctactg gagatttgaa agattttacc gaaatggttt ctataagaag cttagaaacg
     1741 ggaatttttt taagcgcctt tagggatacc tcaaaagatc ctattgatca aaattggaat
     1801 attaaagaaa ttgttttaag cgatgagtta aaacaaaaag ataaattagc tgatgaactt
     1861 ccttttggtt atgtgcaatt tacaaatcca aaagaaagcg atctttgttt agccatctta
     1921 gaagatggaa cctttggagc aaaatcttgt caagatgatc taaaagatgg taaattagaa
     1981 actgtatttt ctataatgcc aacaacaact tcagctgtgc aaattcgttc tttagttttg
     2041 gaatctgatg aatgtatagt aacttttttt aatccaaata ttcctataca aaaacgcttt
     2101 ggaatagccc cttgcaccct agatcctatt tttttgctga agtaaatgaa ctaatgatta
     2161 taaccccacc tttaacagct gctacccctt tagaataaga tttttatctt gttctatttt
     2221 tatatttatt taatatttat gatattacta aaatacacaa aataattaat aataatacaa
     2281 tgtaatttac cttgctctat aattttttta ttttaatgta attttttgtt acaataaatt
     2341 tatacataat aattatcaag gaggaaaaat tggaacaaat tttaacatgg caacaaattt
     2401 atgacccttt ttcaaatatt tggctaagtg ctttagtggc atttttacct atactatgtt
     2461 ttttagtttg tttggttgtt ttaaaactta aaggctatca agcaggtttt ttaactgtta
     2521 tacttgctac tttagtagct ttatttgcct ataaaatgcc ttggaattta gtgggtgcaa
     2581 gttttattca aggctttaca aatggtatgt ggcctatagc ttggattatc atcgcggcaa
     2641 tctttcttta caaactttct atcaagtcag gttcttttga aatcattaaa aaaagcgtga
     2701 tgagcattac tccagatcat agaattcaag tgattttaat aggtttttgt tttggttcat
     2761 ttttagaggg tgctataggt tttggtggcc ctgtggctat aaccgctgca cttttagtag
     2821 gacttggctt gcgtccttta caagctgcag ggctttgtct tatcgcaaat accgctcctg
     2881 ttgcttttgg tgcggtggga attcctatta ttgctatggc aaatcttgtc ggcatagaac
     2941 agcattcagt ttctgccatg gtaggtagaa tgctagttcc tttaagcctt actatacctt
     3001 ttttcatagt ttttttaatg gatggattta aaggtattaa agaaactttt ccagctattt
     3061 tagttgcggc gctaagtttt acaactactc aatttttaag ctcaaatcac ctaggagcgg
     3121 aattacctga tattatttca gctgtggttt ctttagcagt tacgactgta tttttgaaat
     3181 tttggaaacc aaaaaatatt tttagatttg acaatgaaag caatttcact caagataaca
     3241 ccttaagttt taatcaaatt ttaaaagctt ggtcaccttt tattttactc attgtttgta
     3301 ttatcatttg gacacaacct tggtttaaag ccctctttga taaggacgga attttaagct
     3361 atacaagtat tactttacaa tttagcaata tcacaactgg aattttaagc ccttctatca
     3421 caggcatagg agaagctaag cctttatctt tggccttggg tgtagattta atcaatggaa
     3481 aaaccgtagc tcaagcagga acagcgattt tacttgccgc ttttctaact atagctattt
     3541 taaaaatcaa agccgaagat gctgcagaat gcttttgggt taccttaaaa gaaatggcta
     3601 taccttgtat caccataggt ttggttgtgg cctttgcttt tatctctaaa aatagtggta
     3661 tgagcactac tttaggactt gcttttgcac acacaggtga tgctttttct ttcttttcac
     3721 caatcattgg ctggataggg gtatttttaa caggctctga tacaagtgct aatttacttt
     3781 ttggaacctt gcaacaagta agcgctcaaa aactaggtat tagcgaagct ttatttttag
     3841 cagctaattc agtaggtggg gttgttggaa agatgatcag tccacaaagc attgctatag
     3901 cttgtgcagc ggttggactt gtgggaaaag aatctgatct tttcaaattc acattaaaat
     3961 attctgtagc ttttattatt ttaataggaa tttggacttg cattatagct tttttcttac
     4021 aaggaatcat ccctgaagtt atagtgaaat aattaaaaaa tttaagtttt atttcaacaa
     4081 atattcgttt ttagaatatt tgttagaaat tttactttgc ttttattttt acaggattag
     4141 aatatttatc ctaaattatc ctaaaaggag aaaaatgatg aaaaaagtgt atttttacgc
     4201 cacatgctta ggaagtgctg ctatgcaaca aagcgtttta aatgcgataa aacttttaag
     4261 gcgtgagggt attgaagtga ttttcaaaaa aaatcaaacc tgttgcgccc aaccttcttt
     4321 taactcaggt tatttcgatg aaagtcgtga gatcgcttta tataatgtag atttatttga
     4381 taaagattat cccatcgttg tacccagtgg ttcttgtgcg ggtatgatga gtcatgacta
     4441 taaagagctt tttaaaaaca gacctgaatt ttccaaaata aaaactttta gccctagagt
     4501 gatagaactt tcacaatacc ttgatgaagt tttaaaagta gattatgaag ataaaggtgc
     4561 acctataaaa gtaacttggc attctaattg ccatgcttta agagtgcaaa aaagcataca
     4621 agcgagtaaa aatcttatca aaaaactaaa aaacgtagaa ttagtagaac ttcaatacga
     4681 agaagaatgc tgtggttttg gaggaacctt ttcagtaaaa gagcctgaaa tttcaaatgc
     4741 tatggtaaga agcaaaatca aagatataca aaatagcggt gcaaaatatc tcatcagtgg
     4801 tgatggaggt tgtcttttaa atatagatgg cacaatgaaa agaatgggtt tggatataaa
     4861 aggcatacat ttatatgact ttttacttaa acgcttagaa ggagagagac tatgagtcaa
     4921 aaaattcctc acgaacaaat cgttcaaatt aaactcaatg acaaacaaat gcaagaaaat
     4981 ttaatgactg ccatgcatac tttgcaaaaa aatagactca atgttattga tgctagattt
     5041 aaagactggc agggcttaag agctaaagct aagcaagcta aaaataatgc cttaatgagc
     5101 ttagaagaaa gacttttaga atttgaaaaa aatgctacaa aaaatggcat taaggtgcat
     5161 tgggcaagta gtgatgaaga tgcctgtgaa atcgtctatg aaatcatgaa agaaaaaaat
     5221 atcaccaagc ttttaaaagg caagtctatg gcaagtgaag aaataggcct aaatcactac
     5281 ctagaaaaaa aaggtttaaa agctatagaa accgatcttg gagagcttat tttacagctt
     5341 aatgaagaac cccctttaca catagttgta cctgccatac atagaaaccg ccatgaaatc
     5401 ggagaaattt tcaaagaaaa attaggagca aatttagaaa acgatgaacc cgaaagttta
     5461 aatgcggtgg ctagagaaca tttaagaaaa gattttgaag gcttaaaact tggacttagt
     5521 ggggtcaatt ttgccatgtc aagagaagga gctttttggc ttatagaaaa tgaaggaaat
     5581 ggtagaatgt gcactacagc acctgatatt catatcgcac tttgtggtat agaaaaagtc
     5641 atggaaagct ttgaagatgc agctactatg gtttctttac ttactccttc agccacagga
     5701 caatttatac caacttataa caatatcatt acaggcccta gaaaaaatgg agatttagat
     5761 ggtcctaaag aagtacatgt gattttattt gatcacaatc gctctaaaat gttagctcat
     5821 gaggattatt atgaggcttt gcgttgtatt cgatgcgggg cttgtatgaa tttttgccct
     5881 gtttatgatc aaatcggcgg acatgcttat caaaccactt atccaggacc tataggagaa
     5941 gtaatcagtc ctaatatttt tggtatagat catacaggag atattttgaa tttctgttca
     6001 ctttgtgggc gttgttctga agtttgtcca gtccaaattc ctttggctga tcttattcgc
     6061 aaattaagat gtgataaaat aggacaaggt aaaaatccac ctttaggagc aaataatgtt
     6121 catcacaatg ccctagaagc ctttgctttt aaacaattta aaaatatcgc aaccaatggc
     6181 gataaatggc gtttttcact ttcaaaagca cattatttca actggacggt acaaaatttc
     6241 gcaagcattt tgcctgtgat taaaaaatgg tacgctttta aagaattacc tcaaattaaa
     6301 atggatcttt ataaagaagt gcaaaaacta gaaggagtaa gctatgagta aaatcgatga
     6361 aatttcaagc aaaagcaaag caaatatttt agaacatctt aaaaaagctt acaaagaaac
     6421 aactttcaca cgcattgaaa gtatagatcc tgtagaacat atccagacaa cccaagatat
     6481 gcttacagaa atgaagcaaa aaatgagcga taacaaatac atcgttgaaa atgctacaaa
     6541 agatacctta gaagaaaaaa tcaatgaaat tgtcgcaaaa tatggcttta aaagtatgat
     6601 ttatggagcg gatttaaatt taaatttaga acaaatcaaa gcagaaaaaa agatttgctt
     6661 tgataaagaa atcgaaaatt taagatctga agtttttcat agtgattttt ccatcattca
     6721 cgcaagagca ggggtaagct ctcacggagt tgcacttata ccttcaagta aaacccaacc
     6781 tagaatgcta agccttgcac ctaaactttg catagtatta cttaaaaaag aaaatgttgt
     6841 taaaagtctt agcgaagctt taaatttagt aaaaaaagaa aatgaaattt tacctactaa
     6901 tatcttattt atagcagggc cttcaagaac agcagatata gaacttatca ctgtttttgg
     6961 tgttcatggg ccacaaattg cacatattat tatttactga ttctatac
//
LOCUS       DAZBIH010000080         6810 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.081, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000080 DAZBIH010000000
VERSION     DAZBIH010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6810
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.081"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            59..850
                     /locus_tag="ACHFOB_001351"
     CDS             59..850
                     /locus_tag="ACHFOB_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HrcA family transcriptional regulator"
                     /protein_id="HFN5800137.1"
                     /translation="MKSRDKKDLILDSIIQTYLLDNVPIGSNELNLNLCIPASTIRVY
                     LKRLSDEGLITQLHISSGRIPTILTMQNYWQSFWKKEQDQDINIKSENFLKELSKEFE
                     IYCLVYGGRSLVLKEVLDLNAKFIVLDFKEEELVLKYEKEAWNFLQSLIGLDLFSIEK
                     IALRVHFMDLVEKIASLRQNLICYRSNEERAYQIYQNDEFVKLLDCGVHRYFKESLEF
                     EPLFKEGFMGLKVDAQFLGEDVNIILAGSVYTDYKKILQYIKEAA"
     gene            847..1377
                     /gene="grpE"
                     /locus_tag="ACHFOB_001352"
     CDS             847..1377
                     /gene="grpE"
                     /locus_tag="ACHFOB_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HFN5800138.1"
                     /translation="MSEQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKNYDELKD
                     KYMRANAEFENIKKRMEKEKLSAMAYANESFAKDLLDVLDALEAAINVECHDEISLKI
                     KEGVQNTLDLFLKKLEKHGVALIKEEKEFDPNLHEAMFHVDSENHQSGEVVTVLQKGY
                     KIADRVIRPTKVSVAK"
     gene            1400..3271
                     /gene="dnaK"
                     /locus_tag="ACHFOB_001353"
     CDS             1400..3271
                     /gene="dnaK"
                     /locus_tag="ACHFOB_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HFN5800139.1"
                     /translation="MSKVIGIDLGTTNSCVAVYERGESKVIPNKEGKNTTPSVVAFTD
                     KGEVLVGDSAKRQAVTNPEKTIYSIKRIMGLMINEDAAKEAKNRLPYHITERNGACAI
                     EIAGKIYTPQEISAKVLMKLKEDAEAFLGESVVDAVITVPAYFNDAQRKATKEAGTIA
                     GLNVLRIINEPTSAALAYGLDKKDSEKIVVYDLGGGTFDVTVLETGDNVVEVLATGGN
                     AFLGGDDFDNKLIDFLANEFKDETGIDLKNDVMALQRLKEAAENAKKELSSANETEIN
                     LPFITADASGPKHLVKKLTRAKFEGMIDSLVAETITKINEVVSDAGLKKDEIKEIVMV
                     GGSTRVPLVQEEVKKAFNKDLNKSVNPDEVVAIGAAIQGAVIKGDVKDVLLLDVTPLS
                     LGIETLGGVMTKIIEKGTTIPTKKEQVFSTAEDNQSAVTINVLQGEREFSRDNKSLGN
                     FNLEGIPPAPRGMPQIEVTFDIDANGILTVSAKDKATGRAQEIKITGSSGLSEEEINN
                     MVKDAELHKEEDKKRKEAVDARNAADSLAHQVEKSLSELGEKVAAADKENIQKALDDL
                     RETLKNQNASKEEIESKMKALSEVSHKLAENMYKKDEPNTANDKKKKDDDVIDAEVE"
     gene            3410..5320
                     /locus_tag="ACHFOB_001354"
     CDS             3410..5320
                     /locus_tag="ACHFOB_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-6 DNA methylase"
                     /protein_id="HFN5800140.1"
                     /translation="MEQSQFQPIVNFIWSVADDLLRDVYVKGKYRDVILPMTIIRRID
                     AVLEPTKDKVLKTYNTYKDEFENLESLLGGKQGNKLGFFNYSRFNLQTLLNDPKNIRI
                     NFENYLDCFSENIKDIILKFKFKNQLDTLEESNILFGVIERFCSPKVNFGIEDILDEK
                     GNVIHKGLSNLGMGYVFEELIRKFNEENNEEAGEHFTPREIIELMTHLVFLPVKEQIK
                     QGTWLIYDNACGSGGMLTESKEFITDPEGLIQSKANIYLYGQEINPETYAICKADMLI
                     KGEDPDHIKFGSTLSNDQQNLQFDFMLSNPPYGKSWENDQKILGVEKKGSNSTCNDPR
                     FSVGITSKSDGQMMFLLNMLSKMKFDTPLGSRIASVHNGSSLFNSDSGMVAIRKHIIE
                     NDYLEAIVALPTNMFYNTGIPTFIWIITNKKPEHKKGKVQLINATNEEYFSKMKKSLG
                     SKQNEMTKEHIEKITKLFLENASNKDCKILDNEDFGYTKIIIEKPKSIEALKDDEKFA
                     KLKDKDKILEKLEQLEQNLQDFKNREEFIKFLGVKLKKSEENLIIDSDKTNNTEKIPL
                     KTNIQNYYDTEVKPYVANSWIAWESASVGYEILFNKYFYIYTPPRKLEEINSELEKLE
                     KEVQDLLKEIMQ"
     gene            5317..5943
                     /locus_tag="ACHFOB_001355"
     CDS             5317..5943
                     /locus_tag="ACHFOB_001355"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006304 - DNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease subunit S"
                     /protein_id="HFN5800141.1"
                     /translation="MKNFKDSGIEWLGEIPEHWKLIKCKNFFVLKSIPIGDLWNKTKL
                     LSLTLNGVIERDINNPEGKFPSDFSTYQIVKEGDLIFCLFDVAETPRTIGLSKLNGMI
                     TSAYTIFEIKNQEKRFLEYFFIDLDNRKNLKFLYRGLRNTISKEDLLNLKIPLPPLKE
                     QEQIANFLDEKCKKIDLLIEKTEKQIKLIKEYKTTLTNQAVCGRIGKS"
     gene            5971..6636
                     /locus_tag="ACHFOB_001356"
     CDS             5971..6636
                     /locus_tag="ACHFOB_001356"
                     /inference="COORDINATES: protein motif:HMM:NF025027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4145 domain-containing protein"
                     /protein_id="HFN5800142.1"
                     /translation="MNKYTKPCFKGAAFNCPHCGVYSRMEWDGFYNGYNNRIKQVEGY
                     SFSESTCYHCERSVIWYLKDENPKIFFPREVAIPPEENMPENVKEIYEEASLVLGDSP
                     RASCALLRLALQELMKYLKENIQIYNGLKNRNINEDIKEIINIGNFYQEQKESLEEAM
                     NSIRLIGNKASHPSELDINDNSEIANILFEMINFIVGEIITKPKEREERLNKLKSAIG
                     EKQ"
BASE COUNT         2673 a          875 c         1275 g         1987 t
ORIGIN      
        1 gttgtataat acttctagca atcaaaaaat agagtgctaa aaatttaagg aaagagctat
       61 gaaaagccga gataaaaagg atttgatttt agattctatc atccaaactt atcttttaga
      121 taatgttcct attggttcaa atgaattgaa tttaaatctt tgcatccctg cttcaactat
      181 acgtgtctat cttaaaaggc ttagcgacga gggtttgatc actcagcttc atataagtag
      241 tggtagaatt cctactattt tgacaatgca aaattactgg caaagttttt ggaaaaaaga
      301 acaagatcaa gatatcaata tcaaaagtga gaatttttta aaagagttga gtaaagaatt
      361 tgaaatttac tgtcttgttt atggtggtag aagcttagtg cttaaagaag tgcttgatct
      421 aaatgctaag tttatagtgc ttgattttaa agaagaagag ctcgttttaa aatatgaaaa
      481 agaagcatgg aattttttac aaagtcttat aggattggat ctttttagta tagaaaaaat
      541 agctttgagg gttcatttta tggatcttgt agaaaaaata gctagcttaa ggcaaaattt
      601 gatttgctat agaagcaatg aagaaagagc ttatcaaatt tatcaaaatg atgaatttgt
      661 taagctctta gattgcggag ttcatcgtta ttttaaagaa agtcttgaat ttgaaccttt
      721 atttaaagaa ggttttatgg ggcttaaggt ggatgcgcag tttttgggcg aagatgtaaa
      781 tattatctta gcaggtagtg tttatacgga ttataaaaaa atattacaat acataaagga
      841 ggcggcgtga gcgagcaaaa gcaagaattt gaaaacgaaa acgcagaaaa ttctgaacat
      901 ttgcaagatg agaatttgca aaatatcgaa gatgttgagc aaaacaaatt gcaaaaaaac
      961 tatgatgaat taaaagacaa atatatgcgt gcaaacgctg aatttgaaaa tattaaaaaa
     1021 agaatggaaa aagaaaagct aagtgctatg gcttatgcaa atgaaagctt tgcaaaggat
     1081 ttgcttgatg ttttagatgc tttagaagca gctattaatg tcgaatgtca tgatgaaatt
     1141 agcttaaaaa tcaaagaagg agtgcaaaac actttagatt tgtttcttaa aaaacttgaa
     1201 aagcatggag tggctcttat taaagaagaa aaagagttcg atccaaattt acatgaggca
     1261 atgtttcatg tagatagtga aaatcatcaa agtggtgaag tggttaccgt gcttcaaaaa
     1321 ggctataaaa tagccgatcg cgtaatccgc ccaaccaaag ttagtgtagc aaaataaatt
     1381 ttaataaaaa ggataaaaaa tgagtaaagt tataggtata gatttaggaa caaccaattc
     1441 ttgtgttgct gtgtatgaac gcggtgagag taaagtaatt ccaaataaag aaggtaaaaa
     1501 tacaacccct tctgtggtgg cttttacaga taaaggcgag gttttagtag gagatagtgc
     1561 aaaacgccaa gcggtaacta accctgaaaa aactatttat tctattaaaa gaattatggg
     1621 tttgatgatc aatgaagacg cggctaaaga agctaaaaac agacttcctt atcatatcac
     1681 tgaaagaaat ggtgcttgtg ctattgagat tgcaggaaaa atttatactc cgcaagaaat
     1741 ttcagcaaaa gttttaatga aactaaaaga agatgctgaa gctttcttgg gcgagagtgt
     1801 tgtagatgcg gttattactg tgcctgcata ttttaacgat gcgcaaagaa aagcgacaaa
     1861 agaagcagga acgatagcag gacttaatgt attaagaatt atcaatgagc ctacttcagc
     1921 agctctagct tatggacttg ataaaaaaga tagtgaaaaa atcgtggttt atgatctagg
     1981 tgggggaact tttgacgtta ctgtgcttga aactggcgat aatgtagtag aagttttagc
     2041 aacaggtggt aatgctttct tagggggcga tgattttgat aataaactta ttgattttct
     2101 agctaatgaa tttaaagatg aaacaggcat agatcttaaa aatgatgtta tggctttaca
     2161 acgcttgaaa gaagcagcag aaaatgctaa aaaagaatta agctcagcta atgaaactga
     2221 aattaattta ccatttatca cagcagatgc aagtgggcca aaacacttgg ttaaaaaact
     2281 tactagagct aaatttgaag gtatgattga ttctttagtg gctgaaacca tcactaaaat
     2341 caatgaagta gtaagtgacg caggtcttaa aaaagatgag attaaagaaa ttgttatggt
     2401 agggggctct actcgtgttc ctttagtgca agaagaagtg aaaaaagcct ttaataaaga
     2461 tcttaacaag tctgtaaatc ctgatgaagt tgtggctatt ggtgcggcga ttcaaggtgc
     2521 ggttataaaa ggcgatgtta aagatgtgct tttacttgat gttactccgc tctctttggg
     2581 tatagaaact ctaggtgggg taatgactaa gattatcgaa aaaggtacaa ctattccaac
     2641 taaaaaagag caagttttct caaccgctga ggataatcaa agtgctgtaa ctatcaatgt
     2701 tttacaaggg gaaagagaat ttagtcgtga taataaatct ttaggaaatt tcaatcttga
     2761 aggaattcca ccagcaccac gcggtatgcc acaaatcgaa gttacttttg atattgatgc
     2821 aaatggtatt ttaactgtta gtgcaaaaga taaagcaaca ggtagggctc aagagatcaa
     2881 aatcacaggt tcaagcggac ttagcgaaga agaaattaat aacatggtaa aagatgccga
     2941 acttcacaaa gaagaagata aaaaacgtaa agaagctgta gatgctagaa atgcagctga
     3001 tagcttggcc catcaagtag aaaaatcttt aagtgagttg ggtgaaaaag ttgctgctgc
     3061 tgataaagaa aatatccaaa aagctcttga tgatttgcgc gagactttga aaaatcaaaa
     3121 tgcaagcaaa gaagagattg aaagcaaaat gaaagcttta agtgaagttt ctcataagtt
     3181 agctgaaaat atgtataaaa aagatgagcc aaacacagcc aatgataaaa agaaaaaaga
     3241 tgacgatgta atcgacgctg aagttgagta atctttcaaa atcaaaatct tcattcaagc
     3301 cttgttaaaa ggcttgaact caattctatt ttatcttatt taatttttaa aaatttttta
     3361 gtagtgattt tatataatat attattaata aaaatataag gaacacatca tggaacaaag
     3421 ccaattccag cccattgtca actttatatg gagtgtggca gatgatttgc ttcgtgatgt
     3481 ttatgtaaag ggcaaatacc gcgatgttat cttacccatg acaatcataa gaagaattga
     3541 tgcggtttta gagcctacaa aagataaagt tcttaaaacc tacaatacct ataaagatga
     3601 atttgaaaat ttagaatctt tgctaggtgg aaaacaaggg aataaactag gcttttttaa
     3661 ttattctcga tttaatctac aaacccttct aaacgatcca aaaaacataa gaataaattt
     3721 tgaaaattat cttgattgtt ttagtgaaaa tatcaaagat atcattttaa aatttaaatt
     3781 caaaaaccaa ctcgatacct tagaagaatc caatatactt tttggtgtta tagaaagatt
     3841 ttgctcgcct aaggtaaatt tcggtataga agatatttta gatgaaaaag gtaatgttat
     3901 ccataaaggc ttgagtaatc ttggcatggg gtatgttttt gaagagctta tccgtaaatt
     3961 taacgaagaa aataatgaag aagccggaga gcactttacc ccaagagaga ttatagagct
     4021 tatgactcat cttgtatttt tgcctgtaaa agagcagatc aaacaaggaa catggcttat
     4081 ttatgataat gcttgtggaa gtggtggtat gctaacagaa tcaaaagaat tcatcacaga
     4141 tcctgaagga cttatacagt caaaggcaaa tatttatctt tacggacaag aaatcaaccc
     4201 tgaaacttat gctatatgca aagcagatat gttaataaag ggcgaagatc cagatcatat
     4261 aaaatttggt tctaccttaa gcaatgatca acaaaactta caatttgatt tcatgcttag
     4321 caatccgcct tatggtaagt cttgggaaaa tgatcaaaaa attttaggcg tagaaaagaa
     4381 aggctcaaat tcaacttgca atgacccaag atttagcgta ggtatcacaa gcaaaagcga
     4441 tgggcaaatg atgtttttac tcaatatgct tagcaagatg aagtttgaca cccctttggg
     4501 ttctcgtatc gcaagcgtgc ataatggaag ctcacttttt aactcagata gcggtatggt
     4561 agctataaga aagcatatca tagaaaacga ctatcttgaa gctatagtcg ccctacctac
     4621 taatatgttt tataacaccg gtattcctac ttttatatgg atcatcacca acaaaaagcc
     4681 agaacacaaa aaaggcaaag tccagcttat aaacgctaca aatgaagagt atttttcaaa
     4741 aatgaaaaag tctttaggct ctaaacaaaa tgaaatgact aaagaacata tagaaaaaat
     4801 cactaaatta tttttagaaa atgcaagcaa caaagattgc aagattttgg ataatgaaga
     4861 ctttggctat actaaaatca tcatagaaaa accaaaaagc atagaagctt taaaagatga
     4921 tgaaaaattt gcaaaactca aagacaaaga taaaatttta gaaaaattag aacaattaga
     4981 acaaaatcta caagacttta aaaacagaga agaatttatc aaatttttag gtgtaaagct
     5041 taaaaaaagc gaagaaaatc tcatcattga tagcgataaa actaacaata ctgaaaaaat
     5101 tccactcaaa acaaatatac aaaactacta tgacacagaa gtaaagcctt atgtagcaaa
     5161 ctcttggata gcgtgggaga gtgcaagtgt gggctatgaa atacttttta acaaatactt
     5221 ttatatctat actccaccaa gaaaactaga agaaataaac agcgaattag aaaagctaga
     5281 aaaagaagtg caagatcttt taaaagagat catgcaatga aaaatttcaa agatagtggc
     5341 atagaatggc ttggggaaat tccggagcat tggaagttga ttaagtgtaa aaattttttt
     5401 gttttaaaga gtatacctat aggtgatttg tggaataaaa caaaattact atcattaact
     5461 ttaaatggag ttatagaaag agatattaat aatccggaag gaaaatttcc aagtgatttt
     5521 tctacttatc agatagttaa agaaggcgat ttaatttttt gtctttttga tgtagcagaa
     5581 acccctagaa ctataggatt atcaaaatta aatggaatga ttactagtgc ttatactata
     5641 tttgagatta aaaatcaaga aaaacgattt ttagaatatt tctttattga ccttgataac
     5701 agaaaaaatc ttaaattttt atatagaggt ttaagaaata caatatcaaa agaagattta
     5761 ctgaatctta aaattccact tccaccacta aaagagcaag aacaaatcgc aaatttttta
     5821 gatgaaaaat gtaaaaaaat agatttattg atagaaaaaa ccgaaaaaca aataaaactc
     5881 ataaaagaat acaaaaccac actcacaaac caagcggttt gtggtaggat aggaaaaagt
     5941 taaaataact ataaatttgg aggttaaatt atgaataaat acactaagcc atgttttaaa
     6001 ggagcggcat ttaattgtcc tcattgtgga gtatattcgc gtatggagtg ggatggtttt
     6061 tataatgggt ataataatag gataaaacaa gtagaaggat attctttttc tgaatctact
     6121 tgttatcatt gtgaaaggag tgttatttgg tatttaaaag atgaaaatcc aaaaatattt
     6181 tttccaaggg aagttgccat tcctcctgaa gaaaatatgc ctgaaaatgt taaagaaatt
     6241 tatgaagaag catctttagt tttaggagac tctcctagag cttcatgtgc tttattgcgt
     6301 ctagccttgc aagaattaat gaagtatctt aaagaaaata ttcaaatata taatggatta
     6361 aaaaatagaa atattaatga agatatcaaa gaaattataa atattggaaa tttttatcaa
     6421 gaacaaaaag agagtttaga agaagctatg aattctatca ggttgattgg caataaggct
     6481 tctcaccctt ctgaattaga tattaatgat aattcagaaa ttgcaaatat tctttttgaa
     6541 atgattaatt ttatcgtagg agaaattatt acaaaaccaa aagagaggga agaaagatta
     6601 aataaattaa aaagtgctat aggtgaaaaa caataaatca taaggaaaaa tatggaaaat
     6661 aaactatttg aatacgatga agttttaaaa caaacagatg aaaaaagaca ccttctttta
     6721 ggaaatggtt ttagtatggc ttatgataaa aatcgctttt catttacaag tttgttgcaa
     6781 agtgctattg ataatggtat tatagaagaa
//
LOCUS       DAZBIH010000081         6771 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.082, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000081 DAZBIH010000000
VERSION     DAZBIH010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6771)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6771)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6771
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.082"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..323
                     /locus_tag="ACHFOB_001357"
     CDS             <1..323
                     /locus_tag="ACHFOB_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HFN5800143.1"
                     /translation="TFFAMVLPVLYFFPLISYQQILGIILSGIFVIFYPLVLFLHLIN
                     YGDLLNFILDEFFKFKIYGTNIHIPFWIFISYLIASLISVRFKYLAFLCIFANFIPFI
                     MIVI"
     gene            complement(267..1073)
                     /locus_tag="ACHFOB_001358"
     CDS             complement(267..1073)
                     /locus_tag="ACHFOB_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HFN5800144.1"
                     /translation="MKNFFTILLNLRDKEILNYAAALSFYTVLSLIPILFVCFSVFTQ
                     ISSFKAYYEKAKQVIFAFLIPTQQDVVATYIDTFLKNSVNLGIVGLIAMAFTSLAFFS
                     GYDFVINRITKNEPKGLWQSISSYWTLLTLVPLGLGLSFYISGFIQQTLDDYKIGFNF
                     FEILPFVIIWGLFFISYSSSVHKGTLKSLALVSFGAGTIWYIGKNLFVYYVVYNKTYA
                     SVYGSFSTILFFFIWIYISWIIYLFGLKLYYFLNHNHNEGNKIRKNTKKS"
     gene            complement(1077..2459)
                     /locus_tag="ACHFOB_001359"
     CDS             complement(1077..2459)
                     /locus_tag="ACHFOB_001359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-linked oxidase C-terminal domain-containing
                     protein"
                     /protein_id="HFN5800145.1"
                     /translation="MKKEFEQYFKRFLGEENAYFDEIHKRAYSYDATKKHYLPDGVLF
                     PRNEEDIAQILKFCNENNIIVIPRGSGSGFTGGALAVNGGVVLAFEKHMNKILEIDLE
                     NLVAVVQPGVINIHLQKEVAKYGLFYPPDPASMEYSSLGGNVSENAGGMRAAKYGITK
                     DYVMALRAVLPSGEIIRAGKRTIKDVAGYNLAGILIASEGSLAVLSELTLKLIPLPKF
                     KKTAFAIFPSVKSAMNAVYKSLASGVSPVSMEFLDNLSIRAVESKFNKGLPIEAGAIL
                     IADVDGNVKEAIDEDLRNLEYYFLEAGASEFKIAKDEQETADIWFARRNCSQSIAMYG
                     TLKLNEDITVPRSKLPTLLEGIDEISKKYGFKIPCFGHTGDGNVHTNVMVPDKNDKEQ
                     VKKGYEAVEEIFKLTVKLGGTLSGEHGIGLSKAPFMNLAFSEAEMNLMRNIKKAFDPN
                     NILNPFKMGL"
     gene            complement(2462..3187)
                     /locus_tag="ACHFOB_001360"
     CDS             complement(2462..3187)
                     /locus_tag="ACHFOB_001360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasminogen-binding N-terminal domain-containing
                     protein"
                     /protein_id="HFN5800146.1"
                     /translation="MFKTIVCFLALNLSLFAVGFDLKPIKSELVKVDDIYGYIKDSDD
                     IKLYSSGVVVQHFSNSQSIIARASVIDKKNGLAKLEFSVFSALKQDALPLPNVLPKVG
                     DEVVLNFLYDRGLVIAPDEQTYNELVREFPQIYFTHIDIFGAQLIRTATLSPKRSDFR
                     QFCDDNAVGILVVALENQAEVVDCQDFNKLYEVPISKPTSVQVPFYSRIGGYKSNFFD
                     FNSQEIGNYYRYYDALINLPKVQ"
     gene            3309..4469
                     /locus_tag="ACHFOB_001361"
     CDS             3309..4469
                     /locus_tag="ACHFOB_001361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HFN5800147.1"
                     /translation="MKKLLLLFIFVVQSFAALSVEELTWDNGDTLLKFLQRNSIPMSL
                     YYGLDREDQELASDIAYKIKYQVLKDENNNIEQVLIPISDDLQIHIYKDKDGQYTLAF
                     TPVSYQKEDRILHLTIKSSAYQDVYEESGSSTLARAMVRAFRGSINFRNIQKGDEVTL
                     YYEQKRRMGKLWGDINIKMAMVEINKSAREVFSYNDIFYDRDGKELESFLLTKPVNYT
                     RISSPFTTARYHPILKRYRAHLGIDYAAPTGTPVKSAGKGVVTFIGTKGGYGNVIQIK
                     HDSGYMTLYAHLSRFAKIKNGQKVNQGQVIAYVGSTGMSTGPHLHFGVYLNNKAINPA
                     SVVKIAKSELSGKAKENFKHIIAGYEQVVKEALASNQPNPPKEEDFENYIEF"
     gene            complement(4466..4669)
                     /locus_tag="ACHFOB_001362"
     CDS             complement(4466..4669)
                     /locus_tag="ACHFOB_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800148.1"
                     /translation="MYERKDLRVLKIIQKAREFGDGDLLNEALVKQLIDADFCEINEK
                     EKEELATLLNSLINAKDKALLSN"
     gene            complement(4671..5351)
                     /locus_tag="ACHFOB_001363"
     CDS             complement(4671..5351)
                     /locus_tag="ACHFOB_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="laccase domain-containing protein"
                     /protein_id="HFN5800149.1"
                     /translation="MGRSGKNFLSLLENDKVGIFCAFDKDYNVFRAKIHNENLFSHLG
                     FKDIEKCVFMDQIHSHKVIIYEKNLKNLSCDGLISKEKNTALCVLSADCLPLILYHEN
                     GIIAALHSGRKGSFENILKECVDQIVTKSPHLDKNKFHLFILPGICAKNYEIDGDILE
                     FAKKEFKEFVQDNKLDLKALVKFQAQNLGIENIKDCGICSFDDESFFSYRRDKTPKRF
                     VSVVYLKD"
     gene            complement(5315..5926)
                     /locus_tag="ACHFOB_001364"
     CDS             complement(5315..5926)
                     /locus_tag="ACHFOB_001364"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HFN5800150.1"
                     /translation="MFNGLIREIAKVQSYQNNTLSLKAKYRPNLGDSIAVNGACLSVT
                     KLYEGGFEVELSRESRTHIAIENLKDKVHIEPALRYGDRIDGHLMQGHIDFIGTLEKI
                     QKDENGVDFYISLPKEAMKFIAEKGSIGVDGVSLTINEILKNGIRLTIIPITFKETLF
                     KDYQVGRKINIESDLLARYIYAQLQGKNKGLSWEEVERISYLY"
     gene            complement(5935..>6771)
                     /locus_tag="ACHFOB_001365"
     CDS             complement(5935..>6771)
                     /locus_tag="ACHFOB_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800151.1"
                     /translation="KINFKNNIAQFDSVLNSSLADLTKLQGSFDISKMLLNSDFNLKI
                     NDFSKLGFLLDRKLKGKAEFNGKVGFDKNLNFVVNSPNLFEGRLQSTLKDNLLLADLN
                     GVDLSSLAQGLDFMDVYQGKTDVKANYNLLSEEGEVNLDMKEGKLKPNLITNALKILT
                     LKDITNDVYRTANAKALIKKENIKLDLNMQADRSYILVQSGALNSKSGALNLPFDIKL
                     DRANFKGSITGTTENPKVNLNAGSVLNSIKNVVGGGVSDGAKSTGDKVDKAVNKLLNK
                     IF"
BASE COUNT         2384 a         1201 c          840 g         2346 t
ORIGIN      
        1 ggactttttt tgctatggtt ttacctgtgc tttatttttt tccacttata agctaccaac
       61 aaattttagg tattattttg agtggaattt ttgtaatatt ttatccttta gtattatttt
      121 tgcatcttat aaactatgga gatttgctca attttatctt agatgaattt tttaaattta
      181 aaatttatgg aactaatatc catatcccat tttggatttt tataagttat cttattgctt
      241 ctttaatctc tgtgcgattt aaatatctag cttttctttg tatttttgcg aattttattc
      301 ccttcattat gattgtgatt tagaaaataa tagagtttaa gcccaaaaag ataaataatc
      361 caagaaatat aaatccaaat aaaaaagaat aaaatagtag aaaaagatcc ataaacgcta
      421 gcgtatgttt tattatatac cacgtaatat acaaataaat tttttcctat ataccaaata
      481 gtacccgctc caaaagatac taaagctaaa cttttaagag ttcccttatg aacagaactt
      541 gaataagata taaaaaataa accccaaata attacaaagg gtaaaatttc aaaaaaatta
      601 aaccctattt tataatcatc taaagtttgt tggataaaac ctgaaatata aaaactaagc
      661 ccaagcccca aaggaacaag agttaaaaga gtccaataag aactaatact ttgccaaagt
      721 cctttaggtt catttttagt aatgcgattg attacaaaat catagcctga aaaaaaagct
      781 aaagaagtaa atgccatagc aataagacct acaataccta aatttacact attttttaaa
      841 aaagtatcga tgtaggtagc aacaacatct tgttgcgttg gtattaaaaa agcaaaaatt
      901 acttgctttg ctttttcata ataagcttta aaactggaaa tttgcgtaaa aacagaaaaa
      961 catacaaata aaataggtat taaagataat acagtataaa aactaagcgc tgctgcataa
     1021 tttaaaattt ccttatcacg caaatttagt aaaatagtaa aaaaattttt caccttctaa
     1081 agtcccattt taaaaggatt tagtatatta tttggatcaa aagctttttt aatatttctc
     1141 attaaattca tttcggcttc agaaaaagct aaattcataa aaggtgcctt agagagtccg
     1201 ataccatgct ctccgcttaa agttcctcca agtttcactg ttaatttaaa aatctcttcc
     1261 acagcttcat agcctttttt cacctgctct ttatcatttt tatcaggaac cataacatta
     1321 gtatgcacat ttccatcccc tgtatgtcca aaacaaggaa ttttaaaacc atatttttta
     1381 gaaatctcat ctataccttc aagcaaagta ggtagtttag aacgcggaac tgtaatatct
     1441 tcattaagtt ttaaagttcc atacatggca atgctttgag aacaatttct tctagcaaac
     1501 caaatatctg cggtttcttg ttcatctttt gctattttaa attcgctagc gccagcttct
     1561 aaaaaataat attctaaatt tcttaaatcc tcatcaatag cctctttaac attaccatcc
     1621 acatcagcaa tcaaaatagc tccagcttct ataggcaaac ctttattaaa tttgctctca
     1681 accgctctaa tgctaagatt gtctaaaaat tccatagata caggacttac accgctagca
     1741 agacttttgt aaaccgcatt catagcactt tttacacttg gaaaaatagc aaaagcagtt
     1801 tttttaaatt taggcaaagg tattaatttt aaagtaagct cacttaaaac tgccaaagaa
     1861 ccttcactag cgattaaaat tcctgccaaa ttataacctg ctacatcttt aatagtgcgt
     1921 ttccctgcac gaatgatttc tccgctaggc aaaacagccc ttaaagccat cacataatct
     1981 tttgtaatgc catattttgc agctctcatt cccccagcat tttcgcttac attaccccct
     2041 aagcttgaat actccatgct agcagggtca ggtgggtaaa aaagtccata tttagccact
     2101 tctttttgta aatgtatatt aataacccca ggttgcacaa cagccactaa attttcaaga
     2161 tcaatttcta aaattttatt catatgcttt tcaaaagcaa gcaccacccc gccattaaca
     2221 gctaaagctc ctcctgtaaa accagatcct gagcctcgag gtatgactat gatattattt
     2281 tcattgcaaa attttaaaat ttgagcaata tcttcttcat ttcttggaaa aagaacccca
     2341 tcgggtaaat aatgtttttt tgtcgcatcg taactataag ctcttttgtg aatttcatca
     2401 aaataagcgt tttcttctcc taaaaatcgt ttaaaatatt gttcaaattc ttttttcatg
     2461 tttattgcac cttaggaaga ttaatcaaag catcataata tctataataa ttccctattt
     2521 cttgagagtt aaaatcaaaa aaattacttt tatatccacc tatacgagaa taaaaaggaa
     2581 cctgaacgct agttggcttg cttataggca cttcataaag cttattaaaa tcttgacaat
     2641 ccacaacttc tgcttgattt tccaaagcca caaccaaaat gccaaccgca ttatcatcac
     2701 aaaattgcct aaaatctgaa cgcttaggag aaagagtggc cgttctaatt aattgtgctc
     2761 caaaaatgtc aatatgggta aaatatatct gtggaaattc tctaacaagt tcattataag
     2821 tttgctcatc aggagcaatt accaatcctc tatcataaag aaaatttaaa acaacctcat
     2881 cacctacttt aggtaaaaca tttggtaaag gcaaagcatc ttgcttaaga gctgaaaaaa
     2941 cactaaattc taattttgcc aaaccatttt ttttatctat aacacttgct ctagcgatga
     3001 tactttgcga attgctaaaa tgttgcacta ctacgccact tgaataaagt tttatatcat
     3061 cactatcttt aatataacca taaatatcat caacttttac aagttcactt tttataggtt
     3121 ttaaatcaaa tccaaccgca aagaggctaa ggtttaaagc taaaaaacac actatagttt
     3181 taaacaaatt tgctccttaa ataaaaattt atagaattat aatccttttt tgttaagcaa
     3241 ttgtaagaaa aataaagtaa aatatagctt tcaaatttca aaattctttt aaaaattaag
     3301 gttatctcat gaaaaaatta ttgcttttat ttatttttgt tgttcaaagt tttgcagctt
     3361 taagtgttga agagctaact tgggataatg gagatacctt gcttaaattc ttacaaagaa
     3421 attccatacc tatgtcgctt tattatggac ttgatagaga agatcaagaa cttgcttctg
     3481 atatagccta taaaataaaa tatcaagttt taaaagatga aaacaacaac atagaacaag
     3541 ttttaattcc aattagtgat gatttacaaa ttcatatcta taaagataaa gatggacaat
     3601 acactcttgc ttttactcct gtatcttatc aaaaagaaga tagaatttta catttaacca
     3661 ttaaaagctc tgcttatcaa gatgtctatg aagaaagtgg tagcagtact ttagctcgtg
     3721 ctatggttcg tgcttttcga ggaagtataa attttcgcaa tatccaaaaa ggtgatgaag
     3781 taaccctata ttatgaacaa aaaagacgca tgggtaaact ttggggtgat ataaatataa
     3841 aaatggcaat ggtagaaatc aataaaagcg ctagagaagt cttttcttat aatgatatat
     3901 tctatgatcg cgatggcaaa gaattagaat cttttttact tacaaaacct gtgaactaca
     3961 ctagaatttc ctctcctttt acaacagcaa gatatcatcc tatattaaaa cgctatcgtg
     4021 ctcatcttgg tatagactat gctgcaccta ctggaactcc tgtaaaaagt gctggcaaag
     4081 gagtagtaac ctttataggc acaaaaggtg gttatggaaa tgtaattcaa atcaagcatg
     4141 actcaggtta tatgacttta tatgctcatc ttagtcgttt tgcaaaaatt aaaaacggac
     4201 aaaaggtaaa tcaaggacaa gtaattgcat atgttggttc aacaggtatg agcacaggtc
     4261 ctcatttgca ttttggagtg tatttaaata ataaagctat aaatcctgca tctgttgtaa
     4321 aaatcgccaa atcagaactt agtggaaaag caaaagagaa ttttaaacat atcatagctg
     4381 gatacgagca ggttgttaaa gaagccctag cctcaaatca acctaatcct ccaaaagaag
     4441 aggattttga aaattatata gaattttaat tactcaataa cgctttatct tttgcattga
     4501 ttaaagaatt tagaagagtt gcaagctctt ctttttcttt ttcattaatt tcacaaaaat
     4561 ctgcatcaat taattgtttc accaaagctt catttaacaa atccccatcg ccaaattctc
     4621 tagctttttg aatgattttt aacactctta aatcttttct ttcatacatc ttaatccttt
     4681 aaataaacca cgctcacaaa acgcttaggc gttttatcac gacgataaga aaaaaaactc
     4741 tcatcatcaa aactacaaat tccacaatct ttaatatttt caatgcctaa attttgagct
     4801 tgaaatttta ccaaggcttt taaatcaagt ttattatctt gaacaaattc tttaaattct
     4861 tttttagcaa attctaaaat gtctccatct atttcataat ttttagcaca aattccaggc
     4921 aggataaaaa gatgaaattt attcttatct aaatgtggac tttttgtaac aatttgatca
     4981 acgcattctt ttaggatatt ttcaaaactt ccttttctac ctgaatgcaa agctgctata
     5041 ataccatttt catgatataa aattaaaggt agacaatccg cacttaaaac acaaagagcg
     5101 gtattttttt ccttgcttat aagcccatca caactgagat tttttaaatt tttttcataa
     5161 atgataactt tatgagagtg aatttgatcc ataaaaacac atttttcaat atctttaaaa
     5221 cctaaatgag aaaataaatt ctcattatga attttagccc taaaaacatt ataatcctta
     5281 tcaaaagcac aaaaaatacc gactttatca ttttctaata aagataagaa attctttcca
     5341 cttcttccca tgataatcct ttgtttttac cttgtaattg tgcataaata taacgagcaa
     5401 gtaaatcgct ttctatgttg atttttctac ctacttgata gtctttaaaa agcgtttctt
     5461 taaaagtaat aggaataata gtaagcctaa tgccattttt taaaatttca ttgatagtaa
     5521 gacttactcc atcaacacct atactccctt tttctgctat aaatttcata gcttctttag
     5581 gtaaagatat ataaaaatct actccatttt catctttttg aatcttttca agtgtgccga
     5641 taaaatcaat atgtccttgc ataagatgtc catcaattct atcgccatac cttaaagcag
     5701 gttctatatg aactttatct tttaaatttt ctatagctat atgagtgcga ctttcacgag
     5761 aaagttccac ttcaaaacct ccctcataaa gttttgtcac actcaaacaa gccccattta
     5821 cggctatgct atcgccaaga tttgggcgat attttgcttt taagcttaaa gtattgtttt
     5881 gatatgattg aactttagca atttctctta tgagtccatt aaacattttt taccttaaaa
     5941 aatcttattt aataatttat tcaccgcttt atcaacttta tcgcccgtac ttttagcacc
     6001 atcactcaca ccgccaccta ctacattttt aatagaattt aacacacttc ctgcatttaa
     6061 attcacttta ggattttccg tagttcctgt aatacttcct ttaaaattgg ctctatcgag
     6121 tttaatatca aaaggcaaat ttaaagctcc gcttttagaa tttaaagctc ctgattgtac
     6181 taaaatataa gaacgatctg cttgcatatt aagatcaagt ttgatatttt cttttttaat
     6241 caaagcttta gcattagcag tgcgataaac atcattggta atatctttta gtgttaaaat
     6301 ttttaaagca ttggtaataa gatttggttt taatttaccc tctttcatat ccaaattaac
     6361 ctctccttct tcgcttaaaa gattgtaatt tgccttcaca tctgtcttac cttgataaac
     6421 atccataaaa tctaaacctt gagctagact acttaaatcc actccattta aatcagcaag
     6481 caaaaggtta tctttaagtg tgctttgaag cctcccttca aataaatttg gactatttac
     6541 aacaaaattt aaattcttat caaaacctac ctttccatta aattctgcct tacctttaag
     6601 ttttctatcc aacaaaaagc ctagttttga aaaatcattt atctttagat taaaatccga
     6661 atttaaaagc attttgctta tatcaaaact tccttgtagt tttgtaagat cagctaaaga
     6721 tgaatttaaa acagaatcaa attgagcgat attgttttta aaattaattt t
//
LOCUS       DAZBIH010000082         6716 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.083, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000082 DAZBIH010000000
VERSION     DAZBIH010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6716)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6716)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6716
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.083"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            31..2139
                     /gene="ppk"
                     /locus_tag="ACHFOB_001366"
     CDS             31..2139
                     /gene="ppk"
                     /locus_tag="ACHFOB_001366"
                     /EC_number="2.7.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA degradosome polyphosphate kinase"
                     /protein_id="HFN5800152.1"
                     /translation="MQLKKEKLMQTSPDMFINRELSWLRFNSRVLDQCSKNLPLLEKL
                     KFIAIYCTNLDEFYMIRVAGLKQLFSAGVNASSSDEMTPLQQLKAIRKYLHQEKELLE
                     RYFNEITSELEKENLFIKHYENLDENLKQKCDEYFFSNIFPVIVPIAVDATHPFPHLN
                     NLSFSLAVKICDKAHPELVKFGMIRIPRVLPRFYEVSANIYVPIESIVHQHAEEIFPG
                     YKLLASAAFRVTRNADMVIEEEEADDFMMILEQGLKLRRKGAFVRLQIQKDADEQIVE
                     FLNTHMKIFHKDVYEYSILLNLPSLWQIAGNKTFTHLLSPLYTPKTLPPFDENLSIFD
                     AVEKEDILIIQPFESFDPVYKFIKEASKDPEVISIRMTLYRVEKNSNIVQALIDAASD
                     GKQVTVMVELKARFDEENNLHWAKALENAGAHVIYGITGFKVHAKVSQVIRKQGDKLK
                     FYMHLSTGNYNASSAKIYTDVSYFTSKAEFARDTTSFFHILSGFSKNRRLQTLSMSPN
                     QIKEKVLEMIRIETSKKNEGVIVAKMNSLVDSDIIQALYEASMEGVQIDLIIRGICCL
                     KPDEEYSKNIRVRSIIGKYLEHARVFYFKHSEPNYFISSADWMPRNLERRLELMTPIY
                     DERSKAKLAQFLRLQLSDNVLAYELKNNGEYEKIPSSEKIIDSQQTLEEYVSKIYKTL
                     KKDTDQSRATHLASKLFKEN"
     gene            complement(2224..2582)
                     /gene="ssrA"
                     /locus_tag="ACHFOB_001367"
     tmRNA           complement(2224..2582)
                     /gene="ssrA"
                     /locus_tag="ACHFOB_001367"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.5"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
     gene            complement(2583..2993)
                     /locus_tag="ACHFOB_001368"
     CDS             complement(2583..2993)
                     /locus_tag="ACHFOB_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002820028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphotransferase"
                     /protein_id="HFN5800153.1"
                     /translation="MGILTKLELDYEIDDIEKFLQFFRTMCDRFEPLIIKLGSDSVRY
                     KEAIKELETLAHNTAWAARRLNLEEVTDFCVFCEEMMAQANRFNGPASDEFTDWMLLM
                     SDQFEKYCRSYENDDSVLAVFNPLIVNVPNIISK"
     gene            3084..4091
                     /gene="ruvB"
                     /locus_tag="ACHFOB_001369"
     CDS             3084..4091
                     /gene="ruvB"
                     /locus_tag="ACHFOB_001369"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009378 - four-way junction helicase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HFN5800154.1"
                     /translation="MDRIVEIEKYSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAA
                     AKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEKSGDLAAILTNLS
                     EGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTR
                     AGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR
                     IALRLLKRVRDFADVNDEEIITEKRANEALNSLGVNELGFDAMDLRYLELLTAAKQKP
                     IGLASIAAALSEDENTIEDVIEPYLLANGYIERTAKGRIASAKSYSALKLNYEKTLFE
                     E"
     gene            4095..5138
                     /gene="amaA"
                     /locus_tag="ACHFOB_001370"
     CDS             4095..5138
                     /gene="amaA"
                     /locus_tag="ACHFOB_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015562 - efflux transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:1905887 - autoinducer AI-2 transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HFN5800155.1"
                     /translation="MQNGKFFLISFILVILFLLLYLFKGFLLVIIIASLMAVATSNIN
                     AKFLNLTKGHKFLASILTTTCMVLLFFAPFVYAMIELAKALKNFDINLVTQTLDYVKN
                     YQFTLPESFNFLEPKIKEFLASIDLNSISKQILSYASSFTKSGAKFLIDMVLICVFYF
                     FANLYGTELVIYLKSIIPIDKKELDDVLSEVGNVMAVVLYSMVIVAIFQGALFGLITI
                     FYGYDGILMGVIFAVSSLIPAIGGALIYMPVSLYEFASNNLNSALVIFIYSVIVISFI
                     ADTLIKPLIIKWINKKLVKTPTKINELLIFLAMIAGISTFGFWGIILGPAILTFFVST
                     LRMYVILKDKNLI"
     gene            complement(5168..6559)
                     /gene="fumC"
                     /locus_tag="ACHFOB_001371"
     CDS             complement(5168..6559)
                     /gene="fumC"
                     /locus_tag="ACHFOB_001371"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0045239 - tricarboxylic acid cycle
                     heteromeric enzyme complex [Evidence IEA];
                     GO_function: GO:0004333 - fumarate hydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006106 - fumarate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HFN5800156.1"
                     /translation="MEYRVEHDTMGEVKVPNDKYWGAQTERSFENFKIGCEKMPKVLI
                     YAFANLKKSLALVNNKLGKLDDAKKNAIVQACDEIIAGKFDDNFPLAIWQTGSGTQSN
                     MNMNEVIANRATEIMGGDFRKEKLVHPNDHVNMSQSSNDTFPTAMSIVAVEQVEKKLI
                     PALDELIATFEKKVKEFDSIIKIGRTHLQDATPLTLAQEFSGYLSMLLHSKEQIIASL
                     PTLRELAIGGTAVGTGLNAHPELSQKVSEELTQLIGTKFVSSPNKFHALTSHDAINFT
                     HGAMKGLAANLMKIANDIRWLASGPRCGLGELIIPENEPGSSIMPGKVNPTQCEAVTM
                     VAVQVMGNDAAIGFAASQGNFELNVFKPVIIYNFLQSLDLLADSMHSFNIHCAVGIEP
                     NRAKIDHNLHNSLMLVTALNPYIGYENAAKVAKNAHKKGISLKESAMELGLVSEEDFN
                     KFVDPTKMIGPKA"
BASE COUNT         2281 a         1135 c         1060 g         2240 t
ORIGIN      
        1 ttattcaata atttcaaaat aaatgataaa atacaactaa aaaaggaaaa attaatgcaa
       61 acaagtcctg atatgtttat caatcgcgaa ctttcttggc ttcgctttaa ttctcgtgtt
      121 ttagaccaat gttctaaaaa tttacccttg ttagaaaaat taaaatttat agctatatat
      181 tgcactaatt tagatgaatt ttatatgata cgcgtcgcag gcttaaaaca acttttttca
      241 gctggagtta atgcaagcag tagcgatgaa atgaccccgt tacaacaatt aaaagccata
      301 cgcaaatatt tacaccaaga aaaagaactt ttggagcgtt attttaatga aatcacaagt
      361 gaattagaaa aagaaaatct tttcataaaa cattatgaga atttagatga aaatttaaaa
      421 caaaaatgtg atgagtattt tttctctaat atttttcctg ttattgttcc aatagctgtt
      481 gatgctactc acccttttcc gcatttaaac aacttatctt tttcactagc ggttaaaatt
      541 tgcgataaag cgcatcctga acttgtaaaa tttggaatga ttagaattcc aagagtttta
      601 cctcgttttt atgaagtaag tgcaaatatt tatgttccta tagaaagtat agtccatcaa
      661 cacgcagaag aaatttttcc aggctataaa ctcttagctt cagcagcatt tagagtgact
      721 agaaatgcag atatggtaat agaagaggaa gaagctgatg attttatgat gattttagaa
      781 caaggcttga agcttcgcag aaaaggagct tttgtaagat tgcaaattca aaaagatgca
      841 gatgagcaaa tcgtagaatt tcttaatact cacatgaaaa tttttcataa agatgtttat
      901 gaatattcta ttttactcaa tctccctagc ctttggcaaa tcgcaggaaa taaaaccttt
      961 acgcatcttt taagcccact ttacacgcct aaaactttac caccttttga tgagaattta
     1021 tctatttttg atgctgtaga aaaagaagat atactcatta tacaaccttt tgaaagtttt
     1081 gatccagttt ataaatttat caaagaagca agcaaagatc ctgaagtaat ttccataaga
     1141 atgacacttt atagagttga aaaaaattcc aatatagttc aagctttaat tgatgctgca
     1201 agcgatggaa aacaagtaac tgtgatggta gaattaaaag cacgctttga tgaagaaaac
     1261 aatcttcatt gggcaaaagc tttagaaaat gccggagctc atgttattta tggcattaca
     1321 ggttttaaag tccacgctaa ggtttctcaa gtcatacgca aacaaggaga taaacttaaa
     1381 ttttatatgc atttaagtac gggaaattat aatgcaagca gtgctaaaat ctatactgat
     1441 gtgagttatt ttacaagcaa agcagaattt gcaagagata cgacaagctt ttttcacatc
     1501 ttatcgggct ttagcaaaaa tcgtcgcctt caaactcttt caatgagccc aaatcaaatc
     1561 aaagaaaaag ttttagaaat gatacgcatt gaaacaagca agaaaaatga aggtgtgatt
     1621 gtagctaaaa tgaattctct tgtagatagt gatatcatac aagcgcttta tgaagcaagt
     1681 atggaaggag tgcaaatcga tcttatcata cgcggaattt gttgcttaaa acctgatgaa
     1741 gaatacagca aaaacatacg cgttagaagc atcataggaa aatacttaga acatgctaga
     1801 gtattttatt ttaaacatag tgagccaaat tattttatat cgagtgcaga ttggatgcca
     1861 agaaatttag agcgtcgctt agaacttatg actcctatat atgatgaaag aagtaaagct
     1921 aaattagctc aatttttacg cttgcaactt agtgataatg ttttagctta tgagcttaaa
     1981 aacaatggag agtatgaaaa aattccttct tctgaaaaaa tcatagattc tcaacaaacc
     2041 ttagaagaat atgtaagtaa aatttataaa acacttaaaa aagatacaga tcaaagtcgt
     2101 gcaacgcact tagcttccaa actttttaag gaaaactaaa agtttttagg gttttacacc
     2161 ttaaaaactt taaactatga atttttatta atcttcaaat ttcaataaac attgatttaa
     2221 aactggtgga agcgagggga atcgaacccc tgtccaaaaa taatcccaca aagacctcta
     2281 catgcttagc aaagatgact acttcaccct acttcgctca tcttccaaaa ctcaaaagca
     2341 aggctaagac tttatttcac ctcaacgctt gtcaaacgca aggctacact atcaaaaatg
     2401 accgaaaatt aagctagata gtatgactta aatttcaggc tcaactgaac ttacgcagct
     2461 ttagcgtaag caggagcgaa tttaacgttg tttgcgttta attttatttg ggctttttac
     2521 gctttgccca aagcgacatg ccatctaagc agacttactc ctgtcgaagc caagtcgctc
     2581 ccttatttag aaataatatt tggaacatta acaattaaag gattaaaaac cgctaaaaca
     2641 gaatcatcat tttcatatga acgacaatat ttttcaaact gatcactcat caaaagcatc
     2701 caatccgtaa attcatcact agcaggccca ttaaagcgat ttgcttgcgc catcatctct
     2761 tcacaaaata cacaaaaatc agtcacttct tcaagattta agcgtcttgc tgcccaagcg
     2821 gtattgtgtg ctaaagtttc aagctctttt atggcttctt tataacgcac actatcgctt
     2881 ccaagcttga tgattaaagg ttcaaaccta tcgcacatgg ttctaaaaaa ttgtaaaaat
     2941 ttttctatat cgtcaatttc ataatctaat tctaattttg ttaaaattcc catttttaaa
     3001 ccataatcat taaagtttaa tgtaaattct agcaaatttt agctaaaatc ttattttaat
     3061 ttttccaaaa tataagcaaa gatatggata gaatagtaga aatagaaaaa tactcctttg
     3121 atgaaactta cgaaacttcg ttgcgtcctt caaattttga tggttatata ggtcaagaaa
     3181 gcattaaaaa aaatttaaat gtctttatag ctgcagccaa aaaacgcaat gaatgtttag
     3241 atcatatact ttttagtggt cctgcaggac ttggaaaaac aacactagct aatatcatct
     3301 cctatgaaat gagtgcaaat atcaaaacaa ccgccgctcc tatgatagaa aaaagcggag
     3361 atttagccgc tattttaacc aatcttagcg aaggggatat actttttatc gatgaaattc
     3421 atcgcttaag tcctgctatc gaagaagtgc tttaccctgc aatggaggat taccgccttg
     3481 atattatcat aggtagtggt ccagctgctc aaaccataaa aatcgattta ccaaaattta
     3541 ctcttatagg ggctacaacg cgtgcaggta tgcttagcaa tcctttgcgt gatcgttttg
     3601 gtatgcaatt tagattagaa ttttacaaag atagcgaact tgccctcatc ttgcaaaaag
     3661 cagctttaaa acttaataaa acttgcgaag aaaaagccgc acttgagatc gctaaaagaa
     3721 gtcgttcaac ccctagaata gctctaaggc ttttaaaaag agttagagat tttgccgatg
     3781 ttaatgatga agagattatc acagaaaaaa gggctaatga ggccttaaat tctttagggg
     3841 ttaatgagct tggttttgat gcgatggatt taagatatct tgaactttta accgctgcta
     3901 agcaaaaacc tatcgggctt gcaagtattg ctgcggcttt aagtgaagat gaaaatacca
     3961 tagaagatgt aatcgagcct tatttattag ctaatggcta tatagaacgc actgcaaaag
     4021 ggcgtatagc aagtgcaaaa agttatagtg ctttaaaact aaactatgaa aaaactttat
     4081 ttgaggagta aattttgcaa aatggaaaat tctttcttat aagctttatt ttagtcattt
     4141 tatttctttt gctttacctt tttaaaggtt ttttacttgt aattatcata gctagtttaa
     4201 tggcggtagc tacctcaaat atcaatgcga aatttttaaa tcttactaaa gggcataaat
     4261 ttttagcttc cattcttaca acaacttgta tggttttgct tttctttgca ccttttgttt
     4321 atgctatgat agaacttgcc aaagctttaa aaaattttga tattaattta gtcacacaaa
     4381 ctcttgatta tgtcaaaaat tatcaattta ccttgcctga aagctttaat tttttagaac
     4441 ctaaaatcaa agaattttta gcatctatag atttaaatag tatttctaaa caaattctaa
     4501 gttatgcttc aagttttaca aaatcaggag ctaaatttct tatagatatg gttttaattt
     4561 gcgtatttta tttctttgca aatctatatg gaacagaact tgttatctat cttaaatcca
     4621 tcattcctat tgataaaaaa gaacttgatg atgttttaag cgaggtgggt aatgttatgg
     4681 ctgttgtact ttactctatg gtgattgtag cgatatttca aggtgcgctt tttggtttaa
     4741 tcacaatatt ttatggttat gatggaattt taatgggagt aatttttgct gtaagttctc
     4801 tcatacctgc tataggaggt gctttaattt atatgcctgt aagtctttat gaatttgcct
     4861 caaacaatct taactcagct cttgttattt ttatttattc tgtaattgta atttctttta
     4921 tagcagatac tttaatcaaa cctttaatca tcaaatggat caacaaaaaa cttgtaaaaa
     4981 ctcccactaa aatcaacgaa cttttaattt tcttggccat gatagcagga atttcaacct
     5041 ttggtttttg gggtattata ctaggtcctg cgattttaac tttttttgta tcaactttaa
     5101 gaatgtatgt gattttaaaa gataagaatt taatttaact tgccttaaaa aaggcaagtt
     5161 ttatgttcta ggcttttggg cctatcattt tagtaggatc aacaaattta ttgaaatctt
     5221 cttcgctaac caaaccaagc tccattgcgc tttcttttaa agaaatacct tttttatggg
     5281 catttttggc tactttagca gcgttttcat aacctatgta tgggtttaga gcggtaacta
     5341 gcattaaaga attatgaaga ttatgatcga tttttgcacg atttggttct atgcctacag
     5401 cacaatggat attgaatgaa tgcatagaat cagctaacaa atcaagactt tgcaagaaat
     5461 tataaataat cacaggctta aacacattaa gttcaaaatt tccttgactt gctgcaaatc
     5521 cgatagctgc atcatttccc atcacttgta cagcaaccat agtaacagct tcacactggg
     5581 taggatttac cttacctggc ataatcgaac ttcctggctc attttcaggg atgataagct
     5641 caccaagacc gcatcttggg cctgaagcta accatcttat atcatttgca attttcatta
     5701 aatttgcagc caaacccttc atagctccat gagtaaaatt gatcgcatca tgacttgtta
     5761 aagcatgaaa tttatttgga cttgaaacaa atttcgtacc tataagttga gttagctctt
     5821 cacttacttt ttggcttaat tctggatgcg cattaagccc tgttcctact gcggttcctc
     5881 ctatggcaag ttctcttaaa gttggtaaag aagcgatgat ttgctctttt gaatgcaaaa
     5941 gcatagaaag atatccacta aattcttgtg ctagagtaag tggagtagca tcttgtaaat
     6001 gcgtgcgtcc tatcttgata atactatcaa attcttttac ttttttttca aaagttgcaa
     6061 taagctcatc aagcgcaggg ataagctttt tctctacttg ctcaaccgca acgatactca
     6121 tagctgttgg aaaagtatca tttgaacttt gactcatatt aacatgatca tttggatgta
     6181 caagcttttc tttgcgaaaa tccccgccca tgatttcagt ggcacgattt gcaataactt
     6241 cattcatatt catattgctt tgtgtgcctg aacctgtttg ccaaatcgca agtggaaaat
     6301 tatcatcaaa tttacctgcg ataatctcat cgcaagcttg aactatagca tttttcttag
     6361 catcatcaag tttgccaagt ttgttattga ccaaagctaa agatttttta agatttgcaa
     6421 aagcatagat taaaaccttt ggcattttct cgcaaccgat tttgaaattt tcaaaacttc
     6481 tttcagtttg agctccccaa tatttgtcat ttgggacctt aacttcaccc atggtatcat
     6541 gttcaactct gtattccata attttttcct ttgattaaaa ttttatttat tataagctaa
     6601 aaaaataaat actttcaaaa acgttttcct actgaactca ttaaatgcaa ttcataggca
     6661 ttatgagaaa atctattcat taacataaac tgccaaaata cattgttttt atataa
//
LOCUS       DAZBIH010000083         6699 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.084, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000083 DAZBIH010000000
VERSION     DAZBIH010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.084"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            59..343
                     /locus_tag="ACHFOB_001372"
     CDS             59..343
                     /locus_tag="ACHFOB_001372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF362 domain-containing protein"
                     /protein_id="HFN5800157.1"
                     /translation="MAVKITDICIACGSCIDECPVSAIVDDANNPEGEDRYYVYANKC
                     VECVGHNDQPACASACPTDGCIVWSAVESGQPSRDNIGADMRSGDTPVFA"
     gene            456..869
                     /gene="ndk"
                     /locus_tag="ACHFOB_001373"
     CDS             456..869
                     /gene="ndk"
                     /locus_tag="ACHFOB_001373"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HFN5800158.1"
                     /translation="MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQ
                     AENFYAVHKERPFFKDLVEFMISGPVVVSVLEGEGAVLKNRDLMGATNPKEAKAGTIR
                     ADFAESIDANAVHGSDSLENAKIEIEFFFKPNEIC"
     gene            870..1223
                     /locus_tag="ACHFOB_001374"
     CDS             870..1223
                     /locus_tag="ACHFOB_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800159.1"
                     /translation="MKIPFSKINTKEYPFKLNLENMIFEGNLVKINPKLVKINAIMQG
                     FIYRPCDSCGTELELEIKENLELFASDGIFKDEANELSNTIEFFDGHIDLIEVAISEL
                     EVYLSDYFYCINCNN"
     gene            1248..1394
                     /gene="rpmF"
                     /locus_tag="ACHFOB_001375"
     CDS             1248..1394
                     /gene="rpmF"
                     /locus_tag="ACHFOB_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0015934 - large ribosomal subunit
                     [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HFN5800160.1"
                     /translation="MAVPKRRVSKTRAAKRRTHYKVSLPMPIKDKDGSYKMPHRANPT
                     TKEY"
     gene            1400..2386
                     /gene="plsX"
                     /locus_tag="ACHFOB_001376"
     CDS             1400..2386
                     /gene="plsX"
                     /locus_tag="ACHFOB_001376"
                     /EC_number="2.3.1.274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043811 - phosphate:acyl-[acyl carrier
                     protein] acyltransferase activity [Evidence IEA];
                     GO_process: GO:0008610 - lipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HFN5800161.1"
                     /translation="MINIAIDAMGGDFGEKPIIEGVLKALEAKPFNAILVGNSKILKP
                     LIPKKLEQYIQYEEASEIFSMNENATDALKNKETTIYKAINLLKEKKVDAVVSAGHSG
                     ASMSLATLRLGRLKGISRPAIATLMPNIVNKTLLLDVGANTDCKAENLFQFAIMGEVY
                     AREIMQIQKPRLALLSNGEEECKGNELTKESHQLMKKIPNFIGNAEGRDIFNGEIDVL
                     VCDGFDGNVILKACEGVATAIFQLLKNEVKQSFISKIGALLMKPSFKKLKKHTDWQEY
                     GGAPLLGVNGCVIISHGKSDSRAIKNAIFQAINFSQSHINKLIENELGKYNA"
     gene            2379..3353
                     /locus_tag="ACHFOB_001377"
     CDS             2379..3353
                     /locus_tag="ACHFOB_001377"
                     /EC_number="2.3.1.180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004315 - 3-oxoacyl-[acyl-carrier-protein]
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0033818 -
                     beta-ketoacyl-acyl-carrier-protein synthase III activity
                     [Evidence IEA];
                     GO_process: GO:0006633 - fatty acid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFN5800162.1"
                     /translation="MLKASLKSIASYIPEKILSNADLEKMVDTTDEWITRRTGIKERR
                     IASENENTSDLGTKAALKAIERANLKPEDIDAILVATLSPDYFTMPSTACKIASNLGL
                     VNISAFDISAACSGFIYLLEQAKALVESGLKKNVLIIGAEKTSSIMDYNDRSICILFG
                     DGAGAGVVSLDNENHILDVHTASNGNYGDLLMTQRSQKSSLCQTLSMQMKGNEVFKIA
                     VNTLSNDVVEILAKNNILAQEIDLFIPHQANLRIIKAVQEKLNLSDEKCVITVQKYGN
                     TSAASIPMAMNDAYEEGRLKKGNLILLDAFGGGFTWGSALLKFGGENF"
     gene            complement(3350..3700)
                     /locus_tag="ACHFOB_001378"
     CDS             complement(3350..3700)
                     /locus_tag="ACHFOB_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HFN5800163.1"
                     /translation="MIKRFDECDRMSQIIVFDKYFKTAGQVAFEPSGDIKKQTKEALA
                     ELDALFEKIGASKGDLIQIQIWLANMQDFDAMNEIYDAWIKNYPKPVRACVGSALAEG
                     YLVEIQAFGKLREN"
     gene            complement(3697..4773)
                     /gene="serC"
                     /locus_tag="ACHFOB_001379"
     CDS             complement(3697..4773)
                     /gene="serC"
                     /locus_tag="ACHFOB_001379"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004648 -
                     O-phospho-L-serine:2-oxoglutarate aminotransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006564 - L-serine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoserine transaminase"
                     /protein_id="HFN5800164.1"
                     /translation="MRKINFSAGPSTLPLEILEQAQKELCDYQGRGYSIMEISHRTKV
                     FEEVHFGAQEKAKKLYGLNDDYEVLFLQGGASLQFAMIPMNLALNGVCEYANTGVWTK
                     KAIKEAQILGVNVKTVASSEESNFNHIPRVEFRDNADYAYICSNNTIYGTQYQNYPKT
                     KTPLIVDASSDFFSRKVDFSNIALFYGGVQKNAGISGLSCIFIRKDMLERSKNKQIPS
                     MLNYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKAAMLYECIDL
                     SNGFYKGHADKKDRSLMNVSFNIAKNKDLEPLFVKEAEEAGMIGLKGHRILGGIRASI
                     YNALNLDQIKTLCEFMKEFQGKYA"
     gene            complement(4783..5946)
                     /gene="xseA"
                     /locus_tag="ACHFOB_001380"
     CDS             complement(4783..5946)
                     /gene="xseA"
                     /locus_tag="ACHFOB_001380"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009318 - exodeoxyribonuclease VII
                     complex [Evidence IEA];
                     GO_function: GO:0008855 - exodeoxyribonuclease VII
                     activity [Evidence IEA];
                     GO_process: GO:0006308 - DNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HFN5800165.1"
                     /translation="MTPTELNLKAKALLETHFDDIVLSGEISKITLHGSGHWYFDLKD
                     ERSSIACAMFKGANLKVGFKPAVGDFLELCGSVSLYPESGRYQFIATSMKKAGFGDLE
                     AQFLALKERLQKEGLFDPRFKKSLPKFPKKVGIITSKTSAALQDMLKLIHQKEYFLAK
                     IYIFDALTQGNNAPFSLIQALKKADDMDLDVLIIARGGGSREDLFCFNDENLAREIFK
                     AKTPIISAIGHEIDYVISDFVADFRAPTPSAAIDTLFYSKLDIEQSLDLMEEKLMQLW
                     NYKIQNYENLLLNLSKFFKFNSLPKIIDEKIKQSHNIEKQLNHLLANQMRYNELKLDK
                     LQNAYLQHENFFNKSKKFICIRKNGKIANLEDLKSDDIVILSSQTSQKEAKIL"
     gene            complement(5943..6650)
                     /gene="ubiE"
                     /locus_tag="ACHFOB_001381"
     CDS             complement(5943..6650)
                     /gene="ubiE"
                     /locus_tag="ACHFOB_001381"
                     /EC_number="2.1.1.163"
                     /EC_number="2.1.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052624 - 2-phytyl-1,4-naphthoquinone
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0042372 - phylloquinone biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional demethylmenaquinone
                     methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol
                     methylase UbiE"
                     /protein_id="HFN5800166.1"
                     /translation="MQKQEKIIEMFNQIAPTYDKANRILSFGADVAWRKKACQRVMSL
                     YLKKDLKIADIACGTGDMIEIWQESALKMEKNILNIKGIDPSSGMLNVAKEKFPNVEF
                     IKAGAQNLPLESQSLDILSISYGIRNVVERQKALSEFARVLQKDGILVVLEFTKREKG
                     GFIAACRDFYLKNILPSIGGIISKNKSAYEYLPNSIEGFLSKKEFILELKNAGFEMLD
                     YKSFSFGVSSMFIAKKL"
BASE COUNT         2333 a         1085 c          995 g         2286 t
ORIGIN      
        1 attatttaag aattttatgc taaaatcttt taaatcttaa tattaaaaag gagaaaaaat
       61 ggctgtaaaa attacagata tatgtattgc ttgtggttct tgtattgatg agtgtccagt
      121 gagtgctatc gttgatgatg ctaacaatcc agaaggtgaa gatagatatt atgtttatgc
      181 aaacaaatgc gttgaatgcg taggacataa tgatcaacca gcttgtgcca gtgcttgccc
      241 aacagatgga tgtatagttt ggagtgctgt agaatcagga caaccaagtc gtgataatat
      301 tggcgctgat atgagaagtg gggacactcc agtttttgca taattttaaa aaattaaaaa
      361 gctagagatt cctagctttt tcttttaatt taactttctt taaacaaatt caagtataat
      421 tttaagcttt attaaaataa ggagttatta caaagatgga aaaaacttta tctataatta
      481 aacctgatgc tgttaaaaaa ggtgttatag gaaaaatttt agatcgtttt gaaagcaatg
      541 gattaagaat cgctgcaatg aaaaaagttc aacttagtaa agaacaagct gaaaattttt
      601 atgctgttca taaagaaaga ccttttttta aagacttggt tgaatttatg attagcggtc
      661 ctgttgttgt ttctgtacta gaaggagaag gtgctgtatt aaaaaataga gatttaatgg
      721 gagcgacaaa tcctaaagaa gctaaagcag gaacaattag agccgatttt gctgagagta
      781 ttgatgctaa tgctgttcat ggaagtgaca gcttggaaaa tgcaaaaata gaaattgaat
      841 ttttctttaa accaaatgaa atttgctaaa tgaaaatccc tttttctaag attaatacaa
      901 aggaatatcc ttttaaactt aatcttgaaa atatgatttt tgagggaaat ttagtaaaaa
      961 taaatcctaa gcttgttaaa ataaatgcta ttatgcaagg ttttatctat agaccttgtg
     1021 atagttgtgg aactgagtta gaacttgaaa ttaaagaaaa tttagaactt tttgcaagtg
     1081 atggtatttt taaagatgaa gcaaacgaat tgagcaatac tatagaattt ttcgatggac
     1141 atattgattt aatagaagtt gctattagcg agcttgaagt ttatttgagt gattattttt
     1201 attgcataaa ttgcaataat taaattaaat tttataaagg agaaaaaatg gcagtaccaa
     1261 agagaagagt gagcaaaact cgtgcagcta aacgcagaac tcactataaa gttagtcttc
     1321 ctatgcctat aaaagacaaa gatggaagct acaaaatgcc tcaccgtgcg aatccaacaa
     1381 ctaaggaata ttaaaatcaa tgattaacat tgccattgat gcaatgggtg gtgattttgg
     1441 agaaaaaccc attatagaag gcgttttaaa ggcactagaa gcaaaacctt ttaacgctat
     1501 cttagtggga aattctaaaa ttctaaaacc tttaatacca aaaaaattag aacaatatat
     1561 acaatacgaa gaagctagtg aaattttttc gatgaatgaa aatgccacag atgctttaaa
     1621 aaataaagaa acaaccatat acaaagctat taatttatta aaagaaaaaa aagtagatgc
     1681 tgtagtttca gcgggtcata gtggagcaag tatgtctttg gctaccttaa ggcttggaag
     1741 acttaaaggt atttcaagac ctgctattgc cactttaatg ccaaatatcg ttaacaaaac
     1801 tttacttttg gatgttggag ctaatacaga ttgcaaagct gaaaatttat ttcaatttgc
     1861 cataatgggt gaagtttatg ctagagaaat catgcaaatt caaaaaccac gccttgcttt
     1921 actttctaat ggtgaagaag aatgcaaagg taatgaactt accaaagaaa gtcatcagct
     1981 tatgaaaaaa attccaaatt ttataggcaa tgctgaaggt agagatattt tcaatggtga
     2041 aatagatgtt ttagtctgcg atggttttga tggaaatgtt atcttaaagg cttgtgaagg
     2101 tgtggcaaca gctatttttc aacttctaaa aaacgaagta aagcaatctt ttatttctaa
     2161 aataggtgct ttacttatga agccatcttt taaaaaatta aaaaaacaca cagattggca
     2221 agaatatggc ggagcacccc ttcttggagt taatggctgc gtgatcataa gtcatggaaa
     2281 aagcgattct agagctatta aaaatgcaat ttttcaagct ataaatttta gccaatctca
     2341 tatcaataaa cttatagaaa atgaacttgg gaaatacaat gcttaaagcc agtcttaaaa
     2401 gtatagcttc ttatattcca gaaaaaattt taagcaatgc tgatcttgaa aaaatggtag
     2461 ataccaccga tgaatggatc actagacgca caggtattaa agaaaggcgc attgctagtg
     2521 aaaatgaaaa tactagcgat ttgggcacaa aagctgcatt aaaagccata gaaagagcaa
     2581 atttaaaacc tgaagatatt gatgcgattc ttgtagctac tttaagtcct gattatttta
     2641 ctatgccttc aacggcttgt aaaattgctt caaatttagg acttgtaaat attagcgctt
     2701 ttgatatttc agcagcttgt tctggtttta tctatttgct tgaacaagct aaagccttag
     2761 tagaaagtgg tttgaaaaaa aatgttttaa tcataggagc tgaaaaaaca agttcaatta
     2821 tggattacaa tgacagaagt atttgcatac tctttggaga cggtgcaggt gctggagttg
     2881 taagtttgga taatgaaaat catatccttg atgtacatac tgcaagcaat ggtaattatg
     2941 gagatctttt aatgactcaa agatcgcaaa aatcaagcct atgtcaaaca ctttctatgc
     3001 aaatgaaagg caatgaagtt tttaaaatag cagtaaacac gcttagtaat gatgttgtag
     3061 aaattttagc taaaaataac attttagcac aagaaattga tctttttatt cctcatcaag
     3121 ctaatctacg catcattaaa gccgtccaag aaaaactcaa tctaagcgat gaaaaatgtg
     3181 tgatcactgt acaaaaatat ggcaatactt cagctgcttc tatacctatg gcaatgaatg
     3241 atgcctatga agaaggtcga cttaaaaaag gaaatctgat cttactagat gcttttggcg
     3301 gtggttttac ttggggatct gcgcttttaa aatttggagg agagaatttt taattctctc
     3361 ttagctttcc aaaagcttga atttctacca aataaccctc tgctaaagca cttcctacac
     3421 aagctctaac aggtttagga taatttttaa tccaagcatc ataaatttca ttcattgcat
     3481 caaaatcttg catattagct aaccagattt gaatttgaat caaatctcct ttgcttgcgc
     3541 ctattttttc aaacaaagca tcaagttctg caagtgcttc tttggtttgt tttttaatat
     3601 ctccgctagg ttcaaaagcc acttgtcctg cagtcttaaa atatttatca aaaacaataa
     3661 tttgcgacat tctatcgcac tcatcaaaac gctttatcat gcatattttc cttgaaattc
     3721 tttcataaat tcacacaagg tttttatctg atccaaatta agcgcattat aaatacttgc
     3781 acgaattcct cctaaaattc tatgtccttt aagtcctatc attccagctt cttcggcttc
     3841 ctttacaaaa agaggctcta aatctttatt tttagcaata ttaaaactca cattcattaa
     3901 agatctgtcc tttttatctg catgtccttt ataaaatcca ttacttaaat caatacactc
     3961 ataaagcata gcagcttttt gagaattttt ctcatgtact ttatcaagtc cgccttgatt
     4021 taaaagccaa tccatttcaa gattaaacat ataaatggca aaggttggag gcgtattaaa
     4081 caaggactga ttctcagcat gagtcaaata atttaacata ctaggaattt gtttattttt
     4141 agatctttct aacatatctt tacggataaa aatacaactt aaacccgaaa ttccagcatt
     4201 tttttgcact ccgccataaa aaagagcaat atttgaaaaa tctacttttc tagaaaaaaa
     4261 atcactcgat gcatccacaa tcaaaggagt tttagtttta ggataatttt gatattgagt
     4321 gccgtaaata gtattgttag aacaaatata agcataatca gcattatctc taaattccac
     4381 tctaggaata tgattaaaat tactttcctc gctacttgct acggttttaa cattgacacc
     4441 taaaatttgt gcttctttaa ttgctttttt tgtccaaact cctgtatttg catattcaca
     4501 aaccccattt aaagccaaat tcataggaat catagcaaat tgtaaacttg ctccaccttg
     4561 taaaaataat acttcataat catcatttaa cccgtaaagt tttttagctt tctcttgtgc
     4621 tccaaaatgc acttcttcaa atacttttgt gcggtgagaa atttccatta tagaataacc
     4681 cctaccctga taatcacaga gttctttttg agcttgctct aaaatttcta aaggtaaagt
     4741 cgatggccct gcactgaaat tgatttttct cataatctat ccttataaaa tttttgcttc
     4801 tttttgagaa gtttgagaac ttaaaataac gatatcatca ctcttaagat cttctaaatt
     4861 tgctatttta ccattttttc tgatacaaat aaactttttg cttttattaa aaaaattctc
     4921 atgttgcaaa taagcatttt gcaatttatc taattttaat tcattataac gcatttgatt
     4981 tgccaataga tgatttaatt gcttttctat attatggctt tgttttattt tttcatctat
     5041 tatttttggc aaagaattaa atttgaaaaa tttgcttaaa tttaaaagca aattttcata
     5101 attttgtatt ttataattcc aaagttgcat taatttttct tccattaaat ccaaactttg
     5161 ctctatatcc aacttagaat aaaacaaagt atctatagca gctgaaggcg ttggagctct
     5221 aaaatctgca acaaaatcac taataacata atcaatctca tgtcctatgg ctgaaataat
     5281 aggagttttt gctttaaaaa tctctcttgc taaattttca tcattaaaac aaaaaagatc
     5341 ttccctgctt cctccaccac gtgctataat aagaacatct aaatccatat catcggcttt
     5401 ttttaaagct tgtataagag aaaaaggagc attatttcct tgagttaaag catcaaaaat
     5461 ataaattttt gccaaaaaat attctttttg atgaataagt tttaacatat cttgcaaagc
     5521 agcagaagtt tttgaagtta taatacctac ttttttagga aattttggca aagatttttt
     5581 aaagcgtgga tcaaaaagtc cttctttttg caaacgctct tttaaagcca aaaactgtgc
     5641 ttccaaatcc ccaaaacctg cttttttcat actagtagcg ataaattgat aacgaccgct
     5701 ttcaggatat aaactcacac ttccacaaag ctctaaaaaa tcccccaccg ctggtttaaa
     5761 cccgactttt aaattagctc ctttaaacat agcacaagca atgcttgatc tttcatcttt
     5821 taaatcaaaa taccaatgcc ctgaaccatg caaagtaatt tttgaaattt ctccacttaa
     5881 aactatatca tcaaaatgtg tttctaataa agcctttgct ttaagattta attctgttgg
     5941 tgtcatagtt tttttgctat aaacattgaa ctcacgccaa agctaaaact tttataatca
     6001 agcatttcaa aaccagcatt tttaagttct aagatgaatt ctttcttact taaaaatcct
     6061 tcaatagagt ttggcaaata ctcataagca cttttatttt tactgattat cccacctata
     6121 cttggtaaaa tatttttaag ataaaaatct ctacaagctg ctataaatcc acccttttct
     6181 ctttttgtaa attccaaaac taccaaaata ccatcttttt gaagtactct agcaaattcg
     6241 cttaaggctt tttgtctttc tacaacattg cgaatgccat aactaatact taaaatatct
     6301 aaactttgac tttctaaagg taaattttgc gcccctgctt ttataaattc gacatttgga
     6361 aatttttctt ttgcaacatt tagcatgcca ctacttggat caataccttt aatatttaaa
     6421 atattttttt ccatttttaa agcactctct tgccaaatct ctatcatatc ccctgtgcca
     6481 caggcaatat cagcgatttt taaatctttt tttaaataca aactcatcac tctttgacaa
     6541 gcttttttgc gccacgctac atcagctcca aagcttaaaa ttctattcgc cttatcataa
     6601 gtaggtgcaa tttgattaaa catttctata attttttctt gtttttgcat ttttatcctt
     6661 tgtaaatttt caaattttta cttgattttt taagcaatt
//
LOCUS       DAZBIH010000084         6451 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.085, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000084 DAZBIH010000000
VERSION     DAZBIH010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6451
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.085"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            258..2519
                     /locus_tag="ACHFOB_001382"
                     /pseudo
     CDS             258..2519
                     /locus_tag="ACHFOB_001382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344364.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            2664..2792
                     /locus_tag="ACHFOB_001383"
     CDS             2664..2792
                     /locus_tag="ACHFOB_001383"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800167.1"
                     /translation="MQKNKEDFKLSSIDRLKKMNLQKLSYEVRISQDGKSIYAKIK"
     gene            2889..4550
                     /locus_tag="ACHFOB_001384"
     CDS             2889..4550
                     /locus_tag="ACHFOB_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="filamentous hemagglutinin N-terminal
                     domain-containing protein"
                     /protein_id="HFN5800168.1"
                     /translation="MKKLNKLSLSLVVGSLLFTQSYALPSGGKFTHGTSGSISSSNGT
                     MNISGSKTNSVIQWGGGFNIASGETVNFKGSGYNYLNIVYGSKSSHIDGKLEGGSNNI
                     FLINPNGIVVGKGGSINANRVYLSTSSVSNEDMQRFANGVSDTDAIFGLGLSLSPVIA
                     KLNGNVINLGVIEGKSDVTLIGNEVAHHDENKNVGLFISDNPISFRANLLYFILKSNY
                     SIASGSMNYGIQKGSPVEQFVANNQVVYETNDKITSTDIDANVMNSIFNDLKFNSSVN
                     IEDLSKFYKDGKLLTADDLASINQSMDFITALYGQTQDSNNATFANALKEVLGNSYGN
                     LGKANQAIIKTKEILSQIPKITEQQKNIQKAYDQAVDAYNEAVKKYNAALSGVTGSNA
                     SETITALKTVLDKAYNDLKNAEANLESTTASNNSSLKSSNETLASVSIDGYKLTVNGE
                     YLADYKTVNKPNDNNSGSNNGNDGTDSGDINNGNNNVSNNNPNDTIGQQEPDIATALL
                     MQTTDEDPNINEDDKQASIDEASTQLSGNTCIVSDNFKAGNPCSR"
     gene            4538..4678
                     /locus_tag="ACHFOB_001385"
                     /pseudo
     CDS             4538..4678
                     /locus_tag="ACHFOB_001385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344369.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4737..6451
                     /locus_tag="ACHFOB_001386"
                     /pseudo
     CDS             4737..6451
                     /locus_tag="ACHFOB_001386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344370.1"
                     /note="internal stop; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology.
                     GO_component: GO:0046930 - pore complex [Evidence IEA];
                     GO_function: GO:0015288 - porin activity [Evidence IEA];
                     GO_process: GO:0006811 - monoatomic ion transport
                     [Evidence IEA];
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ShlB/FhaC/HecB family hemolysin
                     secretion/activation protein"
BASE COUNT         2491 a          887 c          970 g         2103 t
ORIGIN      
        1 tcattttatt tagggctttt aaatatagtt tttatagtat ttaaaagcca atcatgtatt
       61 tatttttttg tttaaaatat ggatattata tttcaatgag aataaaataa taaattttaa
      121 tttaatttat aattaagcta aatttaatta gaattgcact cgttttttgc gatgttacaa
      181 aacattgtta ttttaatttt attttccaag gacatctatg ccagctatta agctttttaa
      241 cttcactggg agggggtata gagaaatttt gttttaaact ttccattgtt accttcttaa
      301 gcatcaacgc ttttgcagcc actcaagcaa atactacaga caatcgaaat ttcaatattc
      361 caaagcatta ttttaatgat aacgaacttt atgataaaac caattctact tataaaaaat
      421 tccaaggtat aaattattat gctaagagtt ctaaacaata tattaacaat atttaacaat
      481 cataaaccaa atattacaaa tataaacgat ttaaatttta aacattattt acttactcct
      541 gatatgagag aagatgaatt tctttctttt aaagcaaggc atggtgttaa tacagccgat
      601 cgtagtataa aaaacagtta gagtgcttcc ttttttaatc acagtaaaaa ccgatcatgc
      661 tgatgcaagt tataacaaac ttatattaga acaaggagaa cttagttcag ttttttatct
      721 taaacctaaa gatactcata taaaaaccct agtaattcta aaagcaatca acgcatgaat
      781 ttcttaatga gttctacctt tactcattat agtaatgcaa gctataacca aaccatactt
      841 caaaaagatg cccatattag tatgggagtt gagaacactt atgatttagc cttaaatggt
      901 tctccttatt taatcggagc tataaccact tatggagatt ctacaaataa tagtttaaat
      961 ataaaagcaa gtagcagtgt agagtttttt acttccttgc ctaaaaaaga taaaaatggt
     1021 aataatacct ttgatgaaag aatcactcac cttgtaggtg gtttagctta tcaaggtaat
     1081 gtaaaaaaca ataaaatctt tatcaaagat gctaatatga ttatccatgg tccaagcaaa
     1141 gcttatgcta gtttagctgc tgctcatatt agcgcaggtt atataataaa aactttcaag
     1201 ccagtaaaaa ccttttagac atagatagtt ttaatcttga tatgtatatg aaccatgata
     1261 aacaaccctt agcttataat tctgttttat ttgctgattt tttgggtgga aaaaccgaac
     1321 aaggacaagc cttagataat actatcaata ttaaaagata ttaaaaacct aaaaaaataa
     1381 aaacaatgag aacatttttg ctcaagcttt gtttaacttc tacgcaggag cttataataa
     1441 tggagaagta aattataata ccttaaacat agaattaaaa catcctttag aaatcgctaa
     1501 taacttctta ggttataacc aacattcttt ttatggtgac tttgcaacta aaggagttaa
     1561 tcataatacc attaacatta aaaacgatct taccacaacc gatctttctc aaagctataa
     1621 agatgcttta aatattgtag ctgctagaac cttagaaggc agtgcggatt ataataaagt
     1681 ttatattaat aattctatgt caaccttacc tgtatacatt tatacagcta agaaaaatat
     1741 tcttaataat caagactttt atcctagtag tgctaataac aataaagtat cgattaaaga
     1801 ttttgcttct tttagaaatc taactgtatt aacagaagcc aaagaagctt cttataatac
     1861 tataaattat aacaatgttc aaagcattac tgatgcaagt aatacagata aaggttctaa
     1921 aatcatcata agagctttag ataaagctaa tcataatatc atagatataa aaaactattc
     1981 ttctaatgca gctgataatg cttatttgat tatggcttat aatgaagctg cttataataa
     2041 aatcattatc aatgatactt tatttggtgt agcttcagat aaaagagaag gaattttaag
     2101 tattatagct ggactttcaa acaatggcca tgataatacc ttaatcataa acaatctcaa
     2161 tcttgatgag tataaaaata acaattctgt ttttatagct ccttcggcca ttacaggttt
     2221 aagtgaagct aaatcttata ataatacctt atataggcgg gaatttaaat atatttaaaa
     2281 acactttcat gatatattag caggagcctt agtacattat gaagataatt atagtgcttc
     2341 taatgctata actccttcag atatcagttt aagtaaaaac aatagactga ttttaaatac
     2401 taaagttgaa gctagaatta ttaataactt tgagcattat tatcttctta tatccaataa
     2461 aatcaacaca actccccttt ttgaagtcat acgatgctcc tattaatatt tctagctaag
     2521 gagtattagc tctttacacc ctcaaagagt aataccccta tattaaaaat aaagaaatct
     2581 taatcttata aagtgagcaa ggttttatag atgaaaattc taatacttta aatcaagaag
     2641 aacttcaaag ctttattgaa aaaatgcaaa aaaacaaaga agattttaaa ctaagttcta
     2701 tagatagatt aaaaaagatg aatttacaaa aactttctta tgaagtaaga atatcccaag
     2761 atggtaaaag catttacgca aagataaaat aaatcattcc tatcttaaag ataggaatct
     2821 tttgcttgta tttttataaa tataaacaaa agattcttaa atcttaatct tacaaaaagg
     2881 agcaagtcat gaaaaagtta aataaacttt ctttgtcttt agttgtaggt tctttacttt
     2941 ttacacaaag ctatgcttta ccaagtgggg gtaagttcac tcatggaaca agtggaagta
     3001 taagttcaag caatggcact atgaatatct caggaagtaa aacaaactct gttatccaat
     3061 ggggtggtgg ttttaatata gcaagtggtg aaactgtaaa ttttaaaggt agtggctata
     3121 actacttaaa tattgtctat ggttctaaaa gctctcatat agatggaaag ctagaaggtg
     3181 gaagcaataa tatcttttta atcaatccta atggtatagt agtgggtaaa ggtggaagta
     3241 ttaatgcaaa tagagtgtat ttgtccactt catcagttag caatgaagat atgcaaagat
     3301 ttgcaaatgg tgtaagtgac acagatgcaa tatttggttt aggattaagt ttgtctcctg
     3361 taattgcaaa attaaatggc aatgttatta atctaggagt tatagaaggt aaaagcgatg
     3421 tcactttgat aggaaatgaa gtggctcatc atgatgagaa taaaaatgta ggtttattta
     3481 tatctgataa cccaatttca tttagggcaa atttattata ttttatattg aaatctaatt
     3541 attctattgc aagtggaagt atgaattatg gtattcaaaa aggttctcca gtcgaacagt
     3601 ttgttgctaa taaccaagtt gtttatgaaa ccaatgataa aataacttca acagatatcg
     3661 acgctaatgt tatgaattct atatttaatg acttaaaatt taattctagt gttaacattg
     3721 aagatttaag caaattttat aaagatggaa aactattaac agctgatgat ttagcaagca
     3781 ttaatcaaag tatggatttt attactgctt tatatggaca aactcaagat agcaataatg
     3841 caacatttgc aaacgcttta aaggaagtat tgggaaattc ttatggtaat ctaggaaaag
     3901 ctaatcaagc cattattaaa acaaaggaaa ttctttctca aattcctaaa ataaccgaac
     3961 aacaaaaaaa tattcaaaaa gcttacgatc aagctgtaga tgcttacaat gaagcagtga
     4021 aaaaatacaa tgctgcttta agtggagtaa cgggtagtaa tgctagtgaa actataactg
     4081 ctttaaaaac tgttttagat aaagcatata atgatttaaa aaatgctgaa gccaaccttg
     4141 aaagcactac agcaagtaat aattctagct taaaaagttc taatgaaact ttagcaagtg
     4201 taagcataga tggttataaa ctcacagtta atggagaata tcttgcagat tataaaactg
     4261 ttaacaagcc taatgataac aatagtggtt ccaacaacgg aaacgatgga accgattcag
     4321 gtgatattaa caatggtaac aacaacgttt ctaataataa cccaaatgat accataggac
     4381 aacaagaacc tgacattgct acagctttgc ttatgcaaac tacagatgaa gatccaaata
     4441 tcaatgaaga tgataaacaa gcaagtatag atgaagccag tactcaatta agcggtaata
     4501 cttgtatagt atcagataat tttaaagcag gaaatccttg ctcaagatga ttaaactcca
     4561 aaaggttaaa agccttttgg atcttgttaa aaattaataa aacaaacaaa atttaaagat
     4621 taaaaatcaa acaaacacta aggaaaattt aaatgaaacg cattatctta ctatctagtt
     4681 tagctatctt aagcctttat gctagtgata ctaaagataa taaaaaaacc atacaaatgt
     4741 tagaataatc tccttataaa gaagatgcta acttaaaaaa ctacaataac actttaaaag
     4801 taaaagatgg agtgattatc atagatcatt ctaatactag tgatgataat aattcaaaaa
     4861 ccatcaacac aaagaaaaac actcaaaaag ataataacaa cactcaaaaa aatcagccta
     4921 acttgtctaa tgataatact ttaaaaacta aaaccccaaa ttcaaacact ccttctttaa
     4981 aaaatacttc taaagaagaa tcaattcata aagttagctt tagctttcat attaccaata
     5041 aaaacataaa ctttaaagat ctaggtttag atgagcaagt tttacaagaa gccttaaacg
     5101 attacaaaaa agaaagtatt tcagttcaag acttacaaga tatagccaat atcatttctt
     5161 attatgttca agttagtggc tatcctgctg ctacagctta tatcccacaa caagaactaa
     5221 aagatcaaat tcaaatcaat atcaccttag gtgttttagg taaatatgtg gttcaaaaca
     5281 attctagtgt aagagattat gctatagaaa gtaaattacc taatcataaa ggtgaaatca
     5341 tcactactaa attagtagaa gatgcagttt ataaagtcaa tgaaatgtat ggtatacaaa
     5401 cccttgcttc tttaaaagca ggagataatc caggtgaaac agatgtagtg atagaaacta
     5461 cccctagtga tagctttgtt tctgtattgt tttatgggga taattacggt ataaaagaat
     5521 caggcagata taggggtggt gctagtatga gttttaataa catagctcat caaggagata
     5581 gtcttaatgc ttatttgcaa agaagcgatg aagcacaaac taactatggt ataagctata
     5641 ctactttctt agggaattta aaaatcactc caagttattc taaaggaaac tatgctttag
     5701 ggggaatttg gagagaattt gactttatag gaacttctga aaatctaggt gtagatttaa
     5761 aatatccttt gtggattacg acttataatt ctttttattt aacttcaagc tattatcata
     5821 aaaaacttag tgattctaaa tttgatattt taacctttga taaaagctct gatacgataa
     5881 gctttggtat agaaggagtt tataatggca ttagcaatga tagtttttct tatagtgcta
     5941 atgtaagcta tggtaatgtt aaagatgaag gtatgactat agtaggtata ggaacaagca
     6001 aagtaggtgg agtagaattt ggaaaatttg ctaaactcaa tgtcaatctt aacaatgctt
     6061 atttctttaa tgataccttt actcatcttt ttagtttaaa ttatcaacaa gttatcaatg
     6121 gagctacatt agatagtagt gaaactatat ctttaggagg tccttatgga gtaagggctt
     6181 ataataatgg agatggagaa ggagataatg ctgtagtggc tagctttgga cttagaatgg
     6241 ctactccttt aaaagatttt tatatcactc ctttttatga tataggttat tcttggtatg
     6301 agaatgattc ttatacaaac tatatggatg cttatggttt acaactgctt tataataaaa
     6361 cagggaattt ttatgttaag cttgatttag ctagagcttt aaagaagtat aagctagatg
     6421 atgattatag ttctaaagct tatgtaagct t
//
LOCUS       DAZBIH010000085         6287 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.086, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000085 DAZBIH010000000
VERSION     DAZBIH010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6287
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.086"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1149
                     /locus_tag="ACHFOB_001387"
     CDS             <1..1149
                     /locus_tag="ACHFOB_001387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800169.1"
                     /translation="KEGKMKNTLIIFENSLSNLSKDEASDLLEDLSFNLAYKQISHNP
                     HETKKVLNSLLVEFLTILKKLDFFDDENVTKVIKALVKASIVDAQNSLYEYISEAELL
                     NKQIENQKNLIKNQISDNFFEFENILQECSFCDEFSGGLNDAILFDIEMLGILKETAE
                     SAFLTTLEKAEDIELTSSEIAKNLVYNAICEAHFEKERILKISSIILNTAFEIANESM
                     AYAKDLCLGVIKGTRDGIVLAMEKFKASLTYANFEEDVSLKSKELIGIEDDFIALLKK
                     EIQLQNDPCKSIVENLLEHELDNLFAKFRRLAGESREQLILVLNDIKKNPKINDFNKL
                     TQRKLNRFKQEIFELEKIASEKYKDLNSKKAKKLGVRLWEKAKKIVKK"
     gene            complement(1169..1927)
                     /locus_tag="ACHFOB_001388"
     CDS             complement(1169..1927)
                     /locus_tag="ACHFOB_001388"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HFN5800170.1"
                     /translation="MKLLSWNVNGLRAICDKNALDWIAQEKIDFIGFQEIKAHEDKFP
                     KKIYEYPFKQMYFNSAKRAGYSGVMSLCNFDSEVKKCEFFDDEEGRVLEHRFKNIALF
                     NIYFPNGQKDEERLNFKMKFYADFLVYLDKLLKDGFEIIICGDVNTAHKEIDLTHPKA
                     NANTSGFLPIERAWIDDLLKLGFIDTFREINGEIKEKYSWWSYRMKARERNVGWRIDY
                     FFISKGLKDKLKNAFIRDDIFGSDHAPVGIEIDI"
     gene            2045..3583
                     /gene="eptC"
                     /locus_tag="ACHFOB_001389"
     CDS             2045..3583
                     /gene="eptC"
                     /locus_tag="ACHFOB_001389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipid A/FlgG phosphoethanolamine transferase
                     EptC"
                     /protein_id="HFN5800171.1"
                     /translation="MLRLTWFQFTFFNSLMIVLLNFNLFYFVYEKNTQNWFITFVFIV
                     AYFALVHVICSLLFIKFFTKFFSILFIISSFLSVYFISFYGVLIDSDMIQNVVQTDIK
                     EVKDLLNLKLILFIVLALLLVFYVVKVKIDYYGSFKSHIKIKIINIISGLIVVCAVLI
                     PLSKTFLPFFRNYNEIRMYNTPFYQIYAVYRYYVRFVKAKPEFKTIANDAYRENNHTK
                     KLLVLVVGETARAANYSLGGYTKNDTNFYTKKDNVVFFDNFSSCGTATAVSLPCMFSI
                     SKRENYSSSEFQENAMDVLYKTGVDAAWFDNNSGGCKGVCDRLAYKQKLSSDLDENLL
                     IPFKEKLNHLSDQNIIVLHLQGSHGPTYYKRYPSEFKKFTPTCDTNELSKCDSEALIN
                     TYDNTLLYTDYLLSEIIKLLKEQKSYESSLFYLSDHGESLGENGIYLHGMPYAIAPSY
                     QTHIPAIFWSNDEKLMNLAKEHKGLKLSQDNLFSTLLGYFNVKTSVYEPEYDLLNPKL
                     KANP"
     gene            3580..3936
                     /locus_tag="ACHFOB_001390"
     CDS             3580..3936
                     /locus_tag="ACHFOB_001390"
                     /EC_number="2.7.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004143 - ATP-dependent diacylglycerol
                     kinase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006654 - phosphatidic acid biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HFN5800172.1"
                     /translation="MKPKYHFLNNARYALEGLFALFKNEMAFRIELCIIIPAIVFSFF
                     LKVSFLEHLLLISVLILILIVEALNSAIEACVDLITNKWHEKAKIAKDCASAAVFFSV
                     LLALFVWGFILYSIYL"
     gene            3933..4178
                     /locus_tag="ACHFOB_001391"
     CDS             3933..4178
                     /locus_tag="ACHFOB_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006276 - plasmid maintenance [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="replication/maintenance protein RepL"
                     /protein_id="HFN5800173.1"
                     /translation="MKFENLIREILGKKRFELLKFLCENADENGFIMIKISDLEEKLH
                     QSKPTIIATFKFLEEKKLFKRLKNGFYQLNIGDKNET"
     gene            4168..5175
                     /gene="pyrC"
                     /locus_tag="ACHFOB_001392"
     CDS             4168..5175
                     /gene="pyrC"
                     /locus_tag="ACHFOB_001392"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004151 - dihydroorotase activity
                     [Evidence IEA];
                     GO_process: GO:0019856 - pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HFN5800174.1"
                     /translation="MKLKNPLDMHLHLRDNQMLELIAPLSARDFCAAVIMPNLIPTLC
                     NLEDLKAYKMRILKACKDENFTPLMTLFFKNYDEKFLYSAKDEIFGIKLYPAGITTNS
                     NGGVSSFDIEYLKPTLEAMSDLNIPLLVHGETNDFVMDRESNFAKIYEKLAKHFPRLK
                     IVMEHITTKTLCELLKDYENLYATITLHHLIITLDDVIGGKMNPHLFCKPIAKRYEDK
                     EALCELAFSGYEKVMFGSDSAPHPRDTKECCGCAAGVFSAPVILPVLAELFKQNSSEE
                     NLQKFLSDNACKIYDLKFKEDKILTLEEKEWQVPNVYEDKYNQVVPYMAGEILKFQLK
                     Y"
     gene            complement(5207..5421)
                     /locus_tag="ACHFOB_001393"
                     /pseudo
     CDS             complement(5207..5421)
                     /locus_tag="ACHFOB_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343702.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            complement(5477..6196)
                     /locus_tag="ACHFOB_001394"
     CDS             complement(5477..6196)
                     /locus_tag="ACHFOB_001394"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HFN5800175.1"
                     /translation="MNLWDKKAKTYARYQNTLNTIQKQTFEYLQNLNISFQNKSIIDI
                     GCGTGVWTLHLAKEAKEILALDSANAMLEILQEDAKKLNLNNIKCKNLSFETWVQNNP
                     NTKFDLAFLSMSPALQNEKDYTNFLNLAKIKIYLGWADYRKSDFLDPIFKYFNTEFKG
                     FYKKDLENYLLEKNIFFHKIVFDETRKVQRTKEEAIENALWHLSMNKITASKETVSSF
                     VENDITETIESKIKLLIINNL"
BASE COUNT         2250 a          792 c          921 g         2324 t
ORIGIN      
        1 aaagaaggaa aaatgaaaaa tactttaatt atttttgaaa attctttatc aaatctcagt
       61 aaagatgaag caagtgattt acttgaagac ttgagtttta atcttgcata taagcaaatt
      121 tcgcataatc ctcatgaaac aaaaaaagtt ttaaattctc ttttggttga atttttaact
      181 attttgaaaa aacttgattt ttttgatgat gaaaatgtta caaaggttat caaagctttg
      241 gttaaggcga gtattgtaga tgctcaaaat tcgctttatg agtatattag cgaagctgaa
      301 ttattaaaca aacagattga aaatcaaaaa aatttgatta aaaatcaaat cagtgataat
      361 ttttttgaat tcgagaatat tttacaagaa tgttcttttt gtgatgaatt tagcggtggt
      421 ttaaatgatg ctattttatt tgatatagaa atgcttggaa ttttaaaaga aaccgctgaa
      481 agtgcttttt taactacatt agaaaaggct gaagatatag aacttacaag tagtgaaata
      541 gctaaaaatc tcgtatataa tgccatttgt gaagctcatt ttgaaaaaga aagaatttta
      601 aaaatttcaa gtattatttt aaataccgct tttgaaatag ctaatgaatc tatggcttat
      661 gcaaaagatc tttgcttagg tgtgattaaa ggcacaagag atggtattgt tttagcaatg
      721 gaaaaattta aagcttcatt aacttatgca aattttgaag aagatgttag tttaaaaagc
      781 aaagaactaa taggtataga agatgatttt attgctcttt taaaaaaaga gattcaattg
      841 caaaatgatc cttgtaagag tatagttgag aatttgctag aacatgaact tgataatctt
      901 tttgctaaat ttagacgtct tgcaggtgaa agcagagagc aactaatatt agttttaaat
      961 gatattaaga aaaatccaaa gattaatgat tttaacaaac ttactcaaag aaaattaaat
     1021 cgttttaaac aagaaatttt tgaattagaa aaaattgcta gtgaaaaata caaagattta
     1081 aattctaaaa aagctaaaaa gctcggtgta agactttggg aaaaagcaaa aaaaattgtt
     1141 aaaaaataat atcccatttt ttgggatatt aaatatctat ttctatacct acaggtgcgt
     1201 gatcagagcc aaaaatatca tctcttatga aagcgttttt aagtttatct tttaaaccct
     1261 ttgaaatgaa aaaataatca atcctccagc ctacatttct ttctcttgct ttcattctat
     1321 agctccacca cgagtatttt tctttgattt caccattaat ttctctaaaa gtatctataa
     1381 aaccaagttt taacaaatca tcaatccaag ctctttctat aggtaaaaaa cctgaagtat
     1441 tggcattggc ttttgggtgg gtaagatcga tttctttatg agcggtattg acatcaccgc
     1501 aaatgataat ttcaaaccca tcctttaaaa gtttatccaa atatactaaa aaatctgcat
     1561 aaaatttcat cttaaaattt aaacgctctt catctttttg accatttgga aaatagatat
     1621 taaaaagtgc gatattttta aaacggtgtt ctaaaaccct accttcttca tcatcaaaaa
     1681 attcgcattt ttttacttcg ctatcaaaat tacaaagact cattacccca gaatatcccg
     1741 ctcttttagc agaattaaaa tacatctgtt taaaaggata ttcataaatt tttttaggaa
     1801 atttatcttc atgtgctttg atttcttgaa aacctataaa atcaattttt tcttgtgcta
     1861 tccaatcaag tgcattttta tcacaaatag ctcttaagcc attgacattc catgaaagta
     1921 gtttcattat tttccttaaa attttcatta aaagtgtaaa tcataacata aaaagattta
     1981 aaactacaat ccatttaaaa aaattcaata aaattaaaag cttaaatttg aaggtgggat
     2041 ttatatgctt agattaactt ggtttcagtt tacttttttt aattctttga tgattgtatt
     2101 attgaatttt aatttatttt attttgtgta tgaaaaaaat acacaaaatt ggtttataac
     2161 ttttgttttt attgtggcct attttgcact tgttcacgtg atttgctctt tgctttttat
     2221 aaagtttttt actaaatttt tttctatatt atttataata tcatcttttt taagtgttta
     2281 ctttattagt ttttatgggg tgcttataga ttctgatatg atacaaaatg ttgttcaaac
     2341 agacattaaa gaagtaaaag atttgttaaa tttaaaattg atcttattta ttgttttggc
     2401 tttattattg gttttttatg ttgttaaagt aaaaattgat tattatggta gttttaaatc
     2461 ccatataaaa attaaaatta tcaatataat atcaggtttg attgttgttt gtgcagtttt
     2521 aatcccttta agtaaaactt tcttgccttt ttttagaaac tataatgaaa taagaatgta
     2581 taatactcct ttttatcaaa tttatgccgt atatcgctat tatgttcgtt ttgtgaaagc
     2641 taagccagaa tttaaaacca tagctaatga tgcttataga gaaaacaatc acactaaaaa
     2701 acttttagtt ttggtagtgg gtgaaaccgc tagagcggca aactactctt tgggtggata
     2761 tactaaaaat gataccaatt tttataccaa aaaagataat gtagtctttt ttgataattt
     2821 ttcatcatgt ggaacagcaa cagcggtaag tttaccttgt atgttttcta tttctaagcg
     2881 tgaaaattat tcaagttcag aatttcaaga aaatgcgatg gatgtgcttt ataaaacagg
     2941 tgtagatgct gcatggtttg ataataattc tggtggttgt aaaggggttt gtgatagatt
     3001 agcttataag caaaagcttt ctagtgattt ggatgaaaat ttactcattc cttttaaaga
     3061 aaaattaaat catttaagtg atcaaaatat aatagttctt catttgcaag gttctcatgg
     3121 gccaacttat tataaacgct atccaagtga atttaaaaaa tttactccaa cttgtgatac
     3181 taatgaactt tcaaaatgtg atagcgaggc tttaatcaac acttatgaca atactttgct
     3241 ttatacagat tatcttttaa gtgagattat aaaactatta aaagagcaaa aaagctatga
     3301 aagttctttg ttttatcttt cagatcatgg cgaaagtttg ggtgaaaatg gtatttatct
     3361 tcatggtatg ccttatgcta tagcgccaag ttatcaaact catattcctg ctattttttg
     3421 gagcaatgat gaaaaattaa tgaatttagc taaagagcat aaaggtttaa aactttctca
     3481 agataatctt tttagcactc ttttaggata ttttaatgta aaaacaagtg tttatgagcc
     3541 agaatatgat ttattaaatc ctaaacttaa ggcaaatcca tgaaacctaa atatcatttt
     3601 ttaaataacg caagatatgc tttagaaggg ctttttgctt tatttaaaaa tgaaatggcg
     3661 tttagaattg aactttgcat tattatccct gcgatagttt ttagtttttt cttaaaagtt
     3721 agttttttgg agcatttgtt attgataagt gtcttaatac ttatcttaat tgtagaagct
     3781 ttaaattcgg ctattgaagc ttgtgttgat ttgattacaa ataaatggca tgaaaaggca
     3841 aaaatcgcta aagattgtgc gagtgcggca gtgtttttta gtgtgctttt agctcttttt
     3901 gtttggggct ttattttata tagtatttac ttatgaaatt tgaaaattta atacgagaaa
     3961 ttttaggaaa aaagcgtttt gaattgttaa aatttttatg tgaaaatgcc gatgaaaatg
     4021 gttttattat gattaaaatc agtgatcttg aagaaaaatt acatcaaagt aaacctacca
     4081 tcatcgctac ttttaagttt ttagaagaaa aaaaactttt taagcgtctt aaaaatggat
     4141 tttatcagct aaatatagga gataaaaatg aaacttaaaa atcctttaga tatgcatttg
     4201 catttaagag ataatcaaat gttagaactt attgcacctt tgagtgcaag agatttttgt
     4261 gcagctgtga ttatgccaaa tttaatccct acactttgca atttagaaga tctaaaagct
     4321 tataaaatgc gtatccttaa ggcttgtaaa gatgaaaatt tcactccttt aatgacactt
     4381 ttttttaaaa attatgatga gaaatttctt tacagtgcta aagatgaaat ttttggcatt
     4441 aagctttatc cagcaggaat tacaacaaat tcaaatggtg gagtttcaag ttttgatata
     4501 gagtatttaa aacctacttt agaggctatg agtgatttaa atattccttt gttagtgcat
     4561 ggagaaacca atgattttgt aatggacagg gaaagtaatt ttgctaaaat ttatgaaaaa
     4621 ttagccaaac attttccacg acttaagatt gttatggagc atattaccac taaaacttta
     4681 tgtgaacttt taaaagatta tgaaaattta tacgcgacaa tcactttaca tcatttaatc
     4741 atcactttag atgatgttat cggaggtaaa atgaatcctc atcttttttg taagcctata
     4801 gccaagcgtt acgaagataa agaagccctt tgcgaacttg cttttagtgg ttatgaaaaa
     4861 gttatgtttg gaagtgatag tgcgcctcac ccaagagata ctaaagagtg ttgcggttgt
     4921 gccgcaggtg tatttagcgc cccagtgatt ttacctgttt tagctgaatt atttaagcaa
     4981 aatagctcag aagaaaattt gcaaaaattt ttaagcgata acgcttgtaa aatttatgat
     5041 ttaaaattta aagaagataa aattttaact ttagaagaaa aagaatggca agtgccaaat
     5101 gtttatgaag ataaatacaa tcaagtcgtg ccttatatgg ctggagaaat tttaaaattt
     5161 caattaaaat attgattttc caccttaaag gtggaaaatt taagctttat ttacaagagc
     5221 atctctgata tctataacaa gatagattac aaaaaaactt agaaataaag caataaaact
     5281 gactatcaat gacaataaac cagctaaaaa tccgatgcta aacatcataa aaagagaata
     5341 aagcaaagct acaacaaaac ttatcgctgc aattgcatca agaatcaagc gtccaaattt
     5401 gatgattaaa tttttaacca ctaaaaactc ctttgaaata atgagtgaaa ttgtaataaa
     5461 tataagctta atatttttat aagttattta taattaaaag ttttatttta gattctatag
     5521 tttcagtaat atcattttca acaaaagaac ttacagtttc tttagaagct gtgattttgt
     5581 tcatacttaa atgccataga gcattttcta tagcctcttc ttttgttctt tggactttgc
     5641 gtgtttcatc aaaaacaatc ttatgaaaaa atatattttt ttctagtaaa taattttcta
     5701 aatctttttt ataaaaacct ttaaattcag tattaaaata tttaaaaatc ggatctaaaa
     5761 aatcactttt tctataatca gcccaaccaa gataaatttt tattttggct agatttaaga
     5821 aatttgtata atctttttca ttttgcaaag caggggacat acttaaaaat gcaagatcaa
     5881 atttagtatt aggattgttt tgcacccaag tttcaaagct caaatttttg cattttatat
     5941 tgttaagatt tagtttttta gcatcttctt gtaaaatttc aagcatagca tttgcactat
     6001 ctagggctaa aatttcttta gcttctttag ctaagtgtaa agtccaaacc ccagttccac
     6061 atcctatatc tataatgctt ttattttgaa aagaaatatt taaattttgt aaatattcaa
     6121 aagtttgctt ttgtatggtg tttaaagtgt tttgatatct tgcgtaagtt ttggcctttt
     6181 tatcccataa attcatatat tttccttgat aaaatatata aaatcatagc ataaattttt
     6241 aaaattcaag cccttttttg ggcttgaatg attaattaaa atctttt
//
LOCUS       DAZBIH010000086         6281 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.087, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000086 DAZBIH010000000
VERSION     DAZBIH010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6281)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6281)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6281
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.087"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..696)
                     /locus_tag="ACHFOB_001395"
     CDS             complement(<1..696)
                     /locus_tag="ACHFOB_001395"
                     /EC_number="3.1.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008441 - 3'(2'),5'-bisphosphate
                     nucleotidase activity [Evidence IEA];
                     GO_process: GO:0006790 - sulfur compound metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3'(2'),5'-bisphosphate nucleotidase CysQ"
                     /protein_id="HFN5800176.1"
                     /translation="MLNLDKFLEIAINASNQASKAILEERKNFKTWEKEDKSPLTSAD
                     LASNKILNDILGSTDIKILSEEKLLSKEECEELKTFWLIDPLDGTSGFLKGSDEFCIM
                     ISLVHDNRPVLSLIQNPLKGDIFYAHAKTKVYKNDKPLQIDQQEYEKNKYKALLSVNH
                     LSKEDEDFAKEHQLEAINIGSGLKFCAILEARAGVYKRFEKLNIWDIVAGDFLINQNG
                     GFMGDFSKKYILYN"
     gene            complement(777..2045)
                     /locus_tag="ACHFOB_001396"
     CDS             complement(777..2045)
                     /locus_tag="ACHFOB_001396"
                     /EC_number="2.3.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HFN5800177.1"
                     /translation="MSNSVTITDNRNGKSYEFPIYDGTTGPSVVDMSSFYKQTGMFSY
                     DEGLTSTATCKSKITYIDGENGILMHRGYPIEWLAENKLYLDVVHLLLYKELPDATRL
                     EAFRYEMKKRSFIHEGMHRLFDSFPDNAHPMAVLQGAVSSLSAFYPDHLNMNVKEEYM
                     EMAARIVAKIPTIAATAYRYKHGFPMAYPNLDRGFTENFLYMLRTYPYDHVELKPIEV
                     KALDTVFMLHADHEQNASTSTVRAVGSTHAHPYACIAAGIGALWGHAHGGANEGVIRM
                     LEQIGSVDRVDEFIKRAKDKNDPFRLMGFGHRVYKNFDPRAKVLKKLRDQLIDELGID
                     TNLIKVATRIEEIALSDDYFVQRGLYPNVDFHSGLILKALGIPNEMFATLFVIGRTPG
                     WIAQWIEQKEQESLKIVRPRQLYLGETSKI"
     gene            complement(2160..3335)
                     /locus_tag="ACHFOB_001397"
     CDS             complement(2160..3335)
                     /locus_tag="ACHFOB_001397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation:proton antiporter"
                     /protein_id="HFN5800178.1"
                     /translation="MHQSVIDPQGLIDLKILIVIALCLLFSPHIARILRLPLSATEII
                     LGAIIAYFGFIGKSENFALLANVGFYYLMFIAGMEVNLRAFFNMDKEVAKKSFFYIFL
                     LYTLSSFIVWIFGLSLVFVIIIPVMSVGLLSLLFKDFGKECYWLNIAMIVATLAEVIS
                     IVLLTIAGAFLREGTGIIDVAQSILYLNIFLGLCLLGFKMLGVLFWWYPQLKVVLMPW
                     EDKNEKDIRFCMAIFILIIVAMVITKLEIVLGSFIAGSFIATFFDHKKDLEHKLSTFG
                     HGFLIPIFFIHIGSTFDLKMILDYKIVLQAFLLMFVMVGLRILCASVFLKRIGFKNMI
                     LFGLSHSMPLTLLIATATLGYSGKVIDEKLYSALILTALFEAVIVMSMIKFLSNSKK"
     gene            complement(3316..4152)
                     /locus_tag="ACHFOB_001398"
     CDS             complement(3316..4152)
                     /locus_tag="ACHFOB_001398"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase"
                     /protein_id="HFN5800179.1"
                     /translation="MQIMLCAISNIASGNCSEDCKYCTQSAHVKTDIQKYRRKELSQI
                     VLEAKMAKKNEALGFCLVTAGLGLDDEKLEYVCEAAKAVQKEVPNLLLIACNGMASVE
                     QLKELKKAGIFSYNHNLETSKEFFPQICTTHTWESRFQTNLNAKEAGLMLCCGGIYGM
                     GESEEDRLSFRKSLQELQPFSTPINFFIANENLKLQVPRLNADEALKIVRDTKEALPQ
                     SVVMVAGGREVVLRERQYEIFQAGAGAIVIGDYLTTKGEEPSQDIIKLKEMGFTFASE
                     CH"
     gene            complement(4154..6256)
                     /gene="topA"
                     /locus_tag="ACHFOB_001399"
     CDS             complement(4154..6256)
                     /gene="topA"
                     /locus_tag="ACHFOB_001399"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002345052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HFN5800180.1"
                     /translation="MKKNLIIVESPAKAKTIGNFLGKDYEVIASKGHIRDLPKSSFGI
                     KIEDDEFIPEYRITSDHSALVKELKSKAKDAKEVYLATDEDREGEAIAYHIAKAIGKD
                     ENTLPRIVFHEITKNAIENALKNPRKLDMHSVNAQQTRRLLDRIVGYKLSPLLGQKIQ
                     RGLSAGRVQSAALKIIVDREKEIRAFVPLEYFSIDMIFQKDLDAELVEFDKAKIEKLT
                     IANKDRAKLILEACKNEAYTISDIESKERKIAPPPPFMTSTLQQSASNRLGFNPKKTM
                     MIAQKLYEGVNTHEGVMGVITYMRTDSLNLAKEAIENARKFIQANFGKDYLPSKANVY
                     TTKAKGAQEAHEAIRPTNLSFTPEIAAKFLDKDELKLYTLIYNRFLACQMNPAISQTQ
                     NVFVKNDRAVFKISGRKILFDGYYKVYGDMDKDKILPNFKIGENLKIQNLEMNSHFTE
                     PPSRYSEAGLVKKLESLGIGRPSTYAPTISILTSRDYVKIDKKQLIPSDVAFNVTEVL
                     EKNFSDIVDSKFTSNLENTLDEIAEDKADWQETLKEFYYPFMRKIEEGKTKIASQKTV
                     TKLGESCPDCGGELAIRKGRFGEFVACLNFPKCKYSRNLKSESKNESENTAAKAKANG
                     TGITCPSCQKGEIVERFSKRGKFYGCSAYPKCNFISKYKPSEEKCEECGETLVIKELK
                     KGIFLECLKCKIKKEMKD"
BASE COUNT         2028 a         1181 c          882 g         2190 t
ORIGIN      
        1 gttatataaa atgtattttt tagaaaaatc ccccataaat cctccatttt gattaatcaa
       61 aaaatctcct gctacaatat cccaaatatt aagcttttca aatcttttat aaactcctgc
      121 cctagcctct aaaatagcac aaaatttcaa tccagagcct atattaatag cttctaattg
      181 atgctctttt gcaaagtctt catcttcttt gctaagatga ttaacactca ataaggcttt
      241 atatttattt ttctcgtatt cttgctggtc aatttgcaaa ggtttatcgt ttttataaac
      301 cttggttttt gcatgagcat agaatatatc accttttaat gggttttgta taagcgataa
      361 aacagggcga ttgtcatgaa ccaaacttat cataatgcaa aattcatcac tgccttttaa
      421 aaaaccactt gttccatcaa gaggatcgat aagccaaaaa gtttttaatt cttcacactc
      481 ttctttgctg agtaattttt cttctgataa aattttaata tccgtagaac ctaaaatatc
      541 atttagaatt ttattagaag caagatctgc tgatgtaagc gggcttttat cttctttttc
      601 ccaagttttg aaattttttc tctcttctaa aatagcttta gaagcttgat tgctagcatt
      661 tatagcaatt tctaaaaatt tatcaagatt aagcatgatt ataagacttt ctataagatt
      721 ttttaaaatt atacaagaag attttgtgga atttttaatt tccacaaaaa ttttaattaa
      781 attttactag tttcacccaa ataaagttgt cttggacgga ctattttaag actttcttgc
      841 tctttttgtt ctatccactg agctatccat cctggggtgc gtcctataac aaataaagta
      901 gcaaacattt catttggaat acctaaggct tttaaaataa gtccactatg aaaatcaaca
      961 ttcggatata gccctctttg aacaaaataa tcatcgctta aagcaatctc ttctatacgc
     1021 gttgctactt taataagatt ggtatcaata cccaactcat caataagttg atcacgaagc
     1081 tttttcagta cttttgctct aggatcaaaa tttttataaa ccctatgccc aaagcccatc
     1141 aagcggaaag gatcgttttt atccttagct cttttgatga attcatctac cctatcaaca
     1201 ctacctattt gctcaagcat tctaataaca ccttcattag ctccaccatg tgcatgaccc
     1261 caaagcgcac caatacctgc tgctatacag gcataaggat gagcatgagt tgaacccaca
     1321 gcacgaactg ttgaagttga agcattttgc tcatgatctg catgaagcat aaaaaccgta
     1381 tcaagtgctt ttacttctat aggtttaagc tctacatgat cgtaaggata agttcttaac
     1441 atatataaga aattttctgt aaaaccacga tctaaatttg gataagccat aggaaagccg
     1501 tgtttatatc tataagcggt ggccgctata gtagggattt tagctactat tctagctgcc
     1561 atttccatat attcttcttt tacattcatg tttaaatgat caggataaaa agcactaagc
     1621 gatgaaacag caccttgtaa aactgccata ggatgagcat tatcagggaa agaatcaaaa
     1681 agacgatgca taccttcatg gataaaagaa cgttttttca tttcataacg aaatgcttca
     1741 agacgcgtag catcaggcaa ttctttataa agtaaaagat gaaccacatc taaataaagt
     1801 ttgttttcag caagccactc tataggatag ccacggtgca ttaaaattcc gttttctcca
     1861 tcaatataag tgatttttga tttacaagta gctgtagaag tcaagccctc atcataagaa
     1921 aacattcctg tttgtttata aaaacttgac atatctacaa cgcttggccc agttgtaccg
     1981 tcatatatag gaaattcata gctttttcca tttctattat cggttatagt aacggaattt
     2041 gacattttcg ctccttttat tgttactttt attaattcta acaaaaaagg acgattatga
     2101 gtttttttat tattaaattt ttaagatttt atttgctttt ttgagtaaaa aagtaacttt
     2161 cattttttag aattagaaag aaatttaatc atactcataa caataacagc ctcaaataac
     2221 gctgttaaaa taagtgctga ataaagcttc tcatcaataa ccttgcccga ataacccaga
     2281 gtagctgttg ctataagcaa ggttaaaggc atagaatgac taagaccaaa taaaatcata
     2341 tttttaaaac caattctttt taaaaaaaca cttgcacata aaattcttaa acccaccata
     2401 acaaacataa gtaaaaatgc ttgtaaaacg attttataat ctaaaatcat tttaagatca
     2461 aaggttgaac ctatatggat aaaaaaaata gggattaaaa acccgtgtcc aaaagtagaa
     2521 agcttgtgct caagatcttt tttatgatca aaaaaagtag ctataaatga acctgctata
     2581 aaagaaccaa gaacgatttc aagttttgta ataaccatag caacaatgat cagtataaaa
     2641 atggccatac aaaatcttat atctttttca tttttatctt cccatggcat aagcacaact
     2701 ttaagctgag gataccacca aaaaagcaca ccaagcattt taaatccaag caaacaaagc
     2761 cccaaaaaga tattaagata taaaatactt tgcgctacat caataatacc tgttccttcg
     2821 cgcaaaaaag ctcccgctat agtcaaaagc acaatagaaa tcacctcagc taaagtagct
     2881 actatcatag caatatttag ccaataacac tcttttccaa aatccttaaa aagtaaagat
     2941 aaaagcccta cactcatcac aggtataatg ataacaaata ctaaagaaag tccaaaaatc
     3001 catactataa aagaagataa agtataaagt aaaaaaatat aaaaaaaact ttttttggcg
     3061 acttctttat ccatattaaa aaaggctctt aaatttacct ccatacccgc tataaacatt
     3121 agataataaa aacctacatt ggctaaaagt gcaaaatttt cactttttcc tatgaaacca
     3181 aaatacgcta ttattgcccc taaaataatt tcagtagctg aaagaggcaa gcgtaaaatt
     3241 ctcgcaatat gcggagaaaa aagtaagcat aaagctataa caataagaat ttttagatca
     3301 attaaacctt gtggatcaat gacactctga tgcaaaagta aatcccattt cttttaattt
     3361 tattatatct tgacttggtt cttcaccttt agtggttaaa taatccccta taacaatagc
     3421 cccagcacct gcttgaaaaa tttcatactg cctttctcgc aacaccactt cacgcccacc
     3481 tgctaccatt accacgcttt gcggtaaagc ctctttggta tcacgaacaa tttttaaggc
     3541 ttcatcagca ttaagtcttg gaacttgtag ttttaaattt tcattggcta taaaaaaatt
     3601 aataggcgtt gaaaaaggct gtaattcttg caaagatttt ctaaaactta gtctatcttc
     3661 ttcactctca cccataccat aaattccacc acaacaaagc ataagtcctg cttctttagc
     3721 gtttaaattg gtttgaaatc tactttccca agtatgagtg gtgcaaattt gtggaaaaaa
     3781 ttccttagaa gtttcaagat tgtgattata agaaaaaatt cctgcttttt taagttcttt
     3841 gagttgttcc acgcttgcca taccattaca ggcaattaaa agcaaattag gcacttcttt
     3901 ttgcacagcc ttagcagcct cacaaacata ctcaagcttt tcatcatcaa gcccaagtcc
     3961 tgctgtaacc aaacaaaaac ccaaggcttc atttttcttt gccattttcg cttctaaaac
     4021 gatttgtgaa agttctttac gacgatattt ttgaatatct gtttttacat gggcactttg
     4081 ggtgcagtat ttacagtctt ctgaacaatt tccactcgct atatttgaaa tagcacaaag
     4141 catgatttgc attctaatcc ttcatttctt ttttgatttt gcactttaag cattctaaga
     4201 atataccttt tttaagctct tttatcacta aagtttcgcc acactcttcg catttttctt
     4261 cacttggttt gtatttgctt ataaaattgc attttggata agcactacaa ccataaaatt
     4321 taccgcgttt tgaaaagcgt tctacgattt cacctttttg acaacttgga caagtaatac
     4381 ctgtaccatt agctttagct tttgcagcag tattttcgct ttcattttta ctttcacttt
     4441 ttaaatttct tgaatactta cattttggga aatttaaaca cgctacaaat tctccaaaac
     4501 gcccttttct aatagcaagc tccccgccac aatcaggaca actttcgcct agctttgtga
     4561 cagttttttg actagctatt tttgtttttc cttcttcgat ttttctcata aaaggatagt
     4621 aaaattcttt taaagtttct tgccaatctg ccttatcttc tgcgatttca tctaaggtat
     4681 tttcaaggtt tgaagtaaat ttactatcta ctatatcgct aaaatttttt tcaagcactt
     4741 cggttacatt aaaagcaaca tcgctaggaa tgagttgttt tttatctatt tttacataat
     4801 cacggcttgt aagtatagaa atggttggcg cataggtaga agggcgacct atgcctaaac
     4861 tttcaagttt ttttacaagt cctgcttctg aataccttga aggtggttcg gtaaaatgtg
     4921 agttcatttc taaattttgt atttttaaat tttcacctat tttaaaattt ggtaaaattt
     4981 tatccttatc catatcacca taaactttat aatatccatc aaaaaggatt tttctaccgc
     5041 ttattttaaa aactgctcta tcatttttta caaatacatt ttgagtttga gagatagcag
     5101 gattcatctg acaggctaaa aagcgattgt aaataagtgt gtaaagtttt aactcatctt
     5161 tgtctaaaaa tttggccgca atttctggag taaaacttaa atttgtagga cgtatagctt
     5221 catgagcttc ttgagcacct ttggcttttg tagtgtatac atttgcttta cttggaagat
     5281 agtctttgcc aaaatttgct tgtatgaatt ttcttgcatt ctctatagct tctttggcca
     5341 aatttaaact atcggttctc atgtaggtaa taacccccat cacgccttca tgggtattta
     5401 ctccctcata gagtttttga gctatcatca tggttttttt agggttaaaa ccaaggcgat
     5461 tgctagcact ttgctgcaag gttgaagtca taaaaggagg cggtggagcg atttttcttt
     5521 ctttactttc aatgtcgctt atagtataag cttcattttt acaagcctct agtatgagtt
     5581 tagcacgatc tttgttagca atggtaagtt tttctatctt ggctttatca aactcaacta
     5641 gttctgcatc taaatctttt tgaaaaatca tatctatgct aaagtattct aggggtacaa
     5701 aggcacgaat ttctttttca cgatcgacta tgatctttaa agctgcactt tgaacacgcc
     5761 cagcactaag tcctctttga attttttgtc ccaataaagg gctgagctta taccctacaa
     5821 tgcgatctaa aaggcgtcta gtttgctgag catttacaga gtgcatatct aattttcttg
     5881 gattttttaa agcattttct atagcgtttt tagtgatttc atgaaaaaca atacgtggta
     5941 aggtgttttc atcttttcct atagcttttg caatatgata ggctatagcc tctccttctc
     6001 tatcctcatc cgttgcaaga tagacttctt tggcatcttt ggctttgctt ttaagttctt
     6061 taactaaggc gctatgatca cttgtgattc tatactcagg gataaattca tcatcttcta
     6121 ttttaatccc aaagcttgat ttaggcaaat ctctaatatg tcctttggaa gcgataactt
     6181 cataatcttt tcccaaaaaa tttcctatgg ttttagcttt tgcaggagat tctactatga
     6241 ttaaattttt cttcattttg cacccttgtt aaataaaaag c
//
LOCUS       DAZBIH010000087         6271 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.088, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000087 DAZBIH010000000
VERSION     DAZBIH010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6271)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6271)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6271
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.088"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..821)
                     /locus_tag="ACHFOB_001400"
     CDS             complement(<1..821)
                     /locus_tag="ACHFOB_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002924067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN5800181.1"
                     /translation="MFKISIILPTYNVEQYIARAIESCINQTFKDIEIIVVDDCGNDN
                     SINIAKEYSKKDKRIKIIHNEKNLGLLRARYEGVKVANSPYIMFLDPDDYLELNACEE
                     CIKILDEQDEVDLVFFNAIVESNVISYKKFDFNSGFYSKKEFVKKIIAKKNLYWTMWG
                     KLIRKKLYLEAFASLRLEKDVKINMAEDVLLYYPMLSQAQKIAYMNCNLYHYVPNNNS
                     ICNTKNEVLVKNNIQELQLVLNYLRQNYILNKYCSVLYVLIKYLLYIQIYKIKRT"
     gene            910..1785
                     /locus_tag="ACHFOB_001401"
     CDS             910..1785
                     /locus_tag="ACHFOB_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-2,3-sialyltransferase"
                     /protein_id="HFN5800182.1"
                     /translation="MKKVIIAGNGPSLKEIDYSRLPNDFDVFRCNQFYFEDKYYLGKK
                     CKAVFYTPNFFFEQYYTLKHLIQNQEYETELIMCSNYNQAHLENENFVKTFYDYFPDA
                     HLGYDFFKQLKEFNAYFKFHEIYFNQRITSGVYMCAVAIALGYKEIYLSGIDFYQNGS
                     SYAFDTKQENLLKLAPDFKNDRSHYIGHSKNTDIKALEFLEKTYKIKLYCLCPNSLLA
                     NFIELAPNLNSNFIIQEKNNYTKDILIPSSEAYGKFSKNINFKKIKIKENVYYKLIKD
                     LLRLPSDIKHYFKGK"
     gene            1786..2826
                     /gene="neuB"
                     /locus_tag="ACHFOB_001402"
     CDS             1786..2826
                     /gene="neuB"
                     /locus_tag="ACHFOB_001402"
                     /EC_number="2.5.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0016051 - carbohydrate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylneuraminate synthase"
                     /protein_id="HFN5800183.1"
                     /translation="MKEIKIQNIIISEEKAPLVVPEIGINHNGSLELAKIMVDAAFSA
                     GAKIIKHQTHIVEDEMSKAAKKVIPGNAKISIYEIMQKCALDYKDELALKEYTEKLGL
                     VYLSTPFSRAGANRLEDMGVSAFKIGSGECNNYPLIKHIAAFKKPMIVSTGMNSIESI
                     KPTVKILLDNEIPFVLMHTTNLYPTPHNLVRLNAMLELKKEFSCMVGLSDHTTDNLAC
                     LGAVALGACVLERHFTDSMHRSGPDIVCSMDTKALKELIIQSEQMAIMKGNNESKKAA
                     KQEQVTIDFAFASVVSIKDIKKGEVLSMDNIWVKRPGLGGISAAEFENILGKKALRDI
                     ENDTQLSYEDFA"
     gene            2823..3947
                     /gene="neuC"
                     /locus_tag="ACHFOB_001403"
     CDS             2823..3947
                     /gene="neuC"
                     /locus_tag="ACHFOB_001403"
                     /EC_number="3.2.1.183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008761 - UDP-N-acetylglucosamine
                     2-epimerase activity [Evidence IEA];
                     GO_process: GO:0006047 - UDP-N-acetylglucosamine metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HFN5800184.1"
                     /translation="MKKILFITGTRADYSKIKSLMYRVQNSSEFELYIFATGMHLSKN
                     FGYTVKELYKNGFKNIYEFINYDKYYQTDKALATTIDGFSRYVNELKPDLIVVHGDRI
                     EPLAAAIVGALNNILVAHIEGGEISGTIDDSLRHAISKLAHIHLVNDEFAKRRLMQLG
                     EDEKSIFIIGSPDLELLNDNKISLSEAKKYYDINYENYALLMFHPVTTEITSIKNQAD
                     NLVKALIQSNKNYIVIYPNNDLGFELILQSYEELKNNPRFKLFPSLRFEYFITLLKNA
                     DFIIGNSSCILKEALYLKTAGILVGSRQNGRLGNENTLKVNANSDEILKAINTIHKKQ
                     DLFSTKLEILDSSKLFFEYLLSGEFFKLSTQKVFKDIKHA"
     gene            3940..4884
                     /locus_tag="ACHFOB_001404"
     CDS             3940..4884
                     /locus_tag="ACHFOB_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
                     /protein_id="HFN5800185.1"
                     /translation="MLKKIISLYKRYSISKKLVLDNEHFIKENKNIYGKKHKGFFDFD
                     EKAKDVKSPLNPWGFIRVKNEALTLRVSLESILPALQRGIIAYNDCDDGSEELILEFC
                     KQYPNFIAKKYPYKVDLENPKNEENKLYSYYNWAASFIPLDEWFIKIDVDHYYDAKKL
                     YKSFYRIDQENKALCYPRINFIILNGNIYVQNSGNYGFIGGDQLLIKRRNSSFIERRV
                     SKKSQWIDPKGLIEELYSEQQVLSQGVKILQAPLLQWHFPALKYRRNDYQQYLDILSL
                     EEFQAFHRKSKEAKKIDFAMLKRPVIEQILKKFQGEIK"
     gene            4881..5546
                     /locus_tag="ACHFOB_001405"
     CDS             4881..5546
                     /locus_tag="ACHFOB_001405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylneuraminate cytidylyltransferase family
                     protein"
                     /protein_id="HFN5800186.1"
                     /translation="MSLAIIPARGGSKGIKNKNLVLLNNKPLIYYTIKAALNAKSISK
                     VVVSSDSDEILNYAKSQNVDILKRPISLAQDDTTSDKVLLHALKFYKDYEDVVFLQPT
                     SPLRTNIHIDKAFNLYKNSNANALISVSECDNKILKAFVCNDYGDLAGICNDEYPFMP
                     RQKLPKTYMSNGAIYILKIKEFLNNPSFLQNKTKHFLMDESSSLDIDCLEDLKKVEQI
                     WKK"
     gene            5534..>6271
                     /locus_tag="ACHFOB_001406"
     CDS             5534..>6271
                     /locus_tag="ACHFOB_001406"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0046677 - response to antibiotic [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CatB-related O-acetyltransferase"
                     /protein_id="HFN5800187.1"
                     /translation="MEKITLKCNKNILNLLKQYNIYTKTYIENPRRFSRLKTKDFITI
                     PLKNNQLESAAGLGIEEYCAFKFSNILHEMGSFSFSGSFLPHYAKVGRYCSIADGVSM
                     FNFQHPIDRISTASFTYETNHSFINDACQNHINKTFPIVNHNPSSSITHLIIQDDVWI
                     GKDVLLKQGITLGTGCVIGQRAVVTKDVPPYAIVAGIPAKIIKYRFDEKTIERLLKIQ
                     WWRYHFADFYDIDLNLKINQYLDLLEKK"
BASE COUNT         2384 a          880 c          953 g         2054 t
ORIGIN      
        1 tttgttcttt ttattttata tatttgaata tatagcaaat atttaattag cacatagaga
       61 acgctacaat acttgtttaa aatataattt tgccttaaat agtttaaaac caactgcaac
      121 tcttgaatat tatttttaac aagcacttca ttcttagtat tacaaattga attattatta
      181 ggcacgtaat gatataaatt acagttcata tatgctattt tttgagcttg acttaacatt
      241 ggataatata acaatacatc ttcagccata ttgattttaa catctttctc gagtcttaaa
      301 ctcgcaaaag cttctaaata caatttcttt cttataagtt tcccccacat agtccaatat
      361 aaatttttct ttgcaataat ttttttcaca aactcttttt tgctataaaa accagaatta
      421 aagtcaaact ttttatatga aataacatta ctttcaacaa tagcattgaa aaacactaaa
      481 tcaacttcat cctgttcatc taaaattttt atacactctt cacaagcatt tagttccaaa
      541 taatcatcag gatctaaaaa cattatataa ggagagtttg ctactttcac accttcatat
      601 cttgctctta aaagacctaa gtttttttca ttgtggatta tttttattct tttgtctttt
      661 ttagagtatt ctttggctat atttatacta ttatcatttc cacaatcatc aactacaatt
      721 atttctatat ctttaaaagt ctgattgata cagctttcta ttgcccttgc tatatattgt
      781 tccacattat aagttggtaa gatgattgaa attttaaaca tatttatttc ttattttatt
      841 ataatttaat tataacataa aatctatttt gataaaatcg ttaaaaataa atcttgatgg
      901 aaaataatca tgaaaaaagt tattattgct ggaaatggac caagtttaaa agaaattgat
      961 tattcaaggc taccaaatga ttttgatgta tttagatgta atcaatttta ttttgaagat
     1021 aaatactatc ttggtaaaaa atgcaaagca gtgttttaca cccctaattt cttctttgag
     1081 caatactaca ctttaaaaca tttaatccaa aatcaagaat atgagaccga actaattatg
     1141 tgttctaatt acaaccaagc tcatctagaa aatgaaaatt ttgtaaaaac tttttacgat
     1201 tattttcctg atgctcattt gggatatgat ttttttaaac aacttaaaga atttaatgct
     1261 tattttaaat ttcacgaaat ttatttcaat caaagaatta cctcaggggt ctatatgtgt
     1321 gcagtagcca tagccctagg atacaaagaa atttatcttt cgggaattga tttttatcaa
     1381 aatgggtcat cttatgcttt tgataccaaa caagaaaatc ttttaaaact agcccctgat
     1441 tttaaaaatg atcgctcaca ctatatcgga catagtaaaa atacagatat aaaagcttta
     1501 gaatttctag aaaaaactta caaaataaaa ctatattgct tatgtcctaa tagtctttta
     1561 gcaaatttta tagaactagc gccaaattta aattcaaatt ttatcataca agaaaaaaat
     1621 aactacacta aagatatact cataccttct agtgaggctt atggaaaatt ttcaaaaaat
     1681 attaatttta aaaaaataaa aattaaagaa aatgtttatt acaagttgat aaaagatcta
     1741 ttaagattac ctagtgatat aaagcattat ttcaaaggaa aataaatgaa agaaataaaa
     1801 atacaaaata taatcataag tgaagaaaaa gcacccttag tcgtgcctga aataggcatt
     1861 aatcataatg gcagtttaga actagctaaa attatggtag atgcagcctt tagcgcaggt
     1921 gctaagatta taaagcatca aacccacatc gttgaagatg agatgagtaa ggccgctaaa
     1981 aaagtaattc ctggtaatgc aaaaataagc atttatgaga ttatgcaaaa atgtgcttta
     2041 gattataaag atgagctagc acttaaagaa tacacagaaa aattaggtct tgtttatctt
     2101 agcacacctt tttctcgtgc aggtgcaaac cgcttagaag atatgggagt tagtgctttt
     2161 aagattggtt caggtgagtg taataattat ccgcttatta aacacatagc agcctttaaa
     2221 aagcctatga tagttagcac aggaatgaat agtattgaaa gtataaaacc aactgtaaaa
     2281 atcttattag acaatgaaat tccctttgtt ttaatgcaca cgaccaatct ttacccaacc
     2341 ccgcataatc ttgtaagatt aaacgctatg cttgaattaa aaaaagaatt ttcttgcatg
     2401 gtaggcttaa gcgaccacac aacagataat cttgcgtgtt taggtgcggt tgcacttggt
     2461 gcttgtgtgc ttgaaagaca ttttactgat agtatgcata gaagtggccc tgatatagtt
     2521 tgttctatgg atacaaaggc tttaaaagag ctaattatcc aaagtgagca aatggctata
     2581 atgaaaggaa ataatgaaag caaaaaagca gctaagcaag aacaagttac aattgatttt
     2641 gcctttgcaa gcgtagttag cattaaagat attaaaaaag gcgaagtttt atctatggac
     2701 aatatctggg ttaaaagacc tggacttggt ggaattagtg cggctgaatt tgaaaatatt
     2761 ttaggcaaaa aagcattaag agatatagaa aatgatactc agttaagcta tgaggatttt
     2821 gcgtgaaaaa aatccttttt ataacaggca ccagggctga ttattctaag attaaatctt
     2881 taatgtatag ggtgcaaaac tcaagcgaat ttgagcttta catctttgca acaggaatgc
     2941 acttaagcaa aaattttggc tatacagtta aagagcttta taaaaatggc tttaaaaata
     3001 tttatgaatt tataaattat gataaatatt atcaaactga taaggcttta gccactacaa
     3061 ttgatggatt ttcaaggtat gtaaatgagt taaaacctga tttaatcgta gtacatggag
     3121 atagaatcga gcctttagca gcagctattg ttggagcatt aaataatatc ttagtagcgc
     3181 atattgaagg cggagagatt tcaggaacta ttgacgatag cttacgccac gctatatcaa
     3241 aactagctca tattcattta gtaaatgatg agtttgcaaa aaggcgttta atgcagcttg
     3301 gagaagatga aaaatctatt tttatcatag gttcgcctga tttagaactt ttaaacgata
     3361 ataaaatttc acttagcgaa gcaaaaaaat attatgatat aaattatgaa aactacgctt
     3421 tgcttatgtt tcatcctgtt acaactgaaa ttactagcat taaaaatcaa gcagataatt
     3481 tagtaaaagc actgatacaa agtaataaaa attatattgt tatttatcca aataatgatt
     3541 taggttttga attaatcttg caaagctatg aagagcttaa aaacaatcct agatttaagc
     3601 tttttccatc gcttagattt gagtatttta taactttgtt aaaaaatgct gattttataa
     3661 taggtaattc aagttgcatt ttaaaagagg ccttatactt aaaaacagca gggattttag
     3721 ttggctcaag acaaaatgga agacttggca atgaaaatac actaaaagtt aatgcaaata
     3781 gtgatgaaat actaaaagct attaacacca ttcataaaaa acaagattta tttagcacta
     3841 agttagagat tttagatagc tcaaaattat tttttgaata tttattaagc ggagaatttt
     3901 ttaaactcag cacacaaaaa gtttttaagg atataaaaca tgcttaaaaa aatcatttct
     3961 ttatataaaa gatactcgat ttctaaaaaa ttggttttag ataatgagca tttcattaag
     4021 gaaaataaaa acatctatgg aaaaaaacat aagggctttt ttgactttga tgaaaaggct
     4081 aaggatgtga aatcacccct taatccttgg ggatttatca gggttaaaaa tgaagcttta
     4141 accctaagag tttctttaga aagtatacta cctgctttac aaagaggaat tatagcttac
     4201 aacgactgtg atgatgggag tgaagagctt attttagaat tttgcaagca atatcccaac
     4261 ttcattgcta aaaaatatcc ttataaagta gatctagaaa atcctaaaaa tgaagaaaat
     4321 aaactttact cttattacaa ttgggcagca tcttttatac ccttagatga gtggtttata
     4381 aaaatcgatg tggatcatta ctacgatgcc aagaagcttt ataagagttt ttataggatt
     4441 gatcaagaaa ataaagcctt atgctaccca agaattaatt ttataatctt aaatggaaat
     4501 atttatgtgc aaaatagtgg aaattatgga ttcatagggg gggatcaact cttgattaaa
     4561 agaagaaata gtagctttat agaaagaagg gtttcaaaaa aaagccaatg gatagatcct
     4621 aagggactta tagaagaact ctactccgag caacaagtct tatctcaagg agtgaaaata
     4681 ctacaagctc ccctacttca gtggcatttt cctgccttaa aataccgccg aaacgattac
     4741 caacaatatt tagatatctt gagtttagaa gaatttcagg cctttcatcg taagagcaaa
     4801 gaggctaaaa aaatagactt tgccatgcta aaacgccctg taatcgagca aatattaaag
     4861 aaatttcaag gagagataaa atgagcttag caataatccc tgctcgtggt ggctcaaagg
     4921 gtattaaaaa taaaaatttg gttttattaa ataataaacc tttaatttat tacaccatta
     4981 aagctgcact aaatgctaaa agcattagta aagttgttgt aagcagtgat agtgatgaaa
     5041 ttttaaatta tgcaaaaagc caaaatgttg atattttaaa acgcccaatt agccttgcac
     5101 aagatgatac tacaagcgat aaagtgcttt tacatgctct aaaattttac aaagattatg
     5161 aagatgtagt ttttttacaa cccacttcgc cgctaagaac aaatattcat attgataaag
     5221 cttttaatct ttataaaaat agcaatgcaa atgccctaat tagcgtaagc gaatgtgata
     5281 ataaaattct aaaagccttt gtttgtaatg attatggcga tttagcaggg atttgtaatg
     5341 atgaatatcc ttttatgcca aggcaaaaat tgcctaaaac ttatatgagc aatggtgcaa
     5401 tttatatttt aaagataaaa gaatttttaa acaatcctag ctttttgcaa aacaaaacca
     5461 agcatttttt aatggacgaa agctcaagtt tagatattga ctgtttagag gatttaaaaa
     5521 aggttgaaca gatatggaaa aaataacctt aaaatgcaat aaaaatatat taaatttatt
     5581 aaagcaatat aatatttata caaaaactta catagaaaat cctagaagat tttcaagact
     5641 aaaaaccaaa gattttataa ccattccatt gaaaaacaat caattagaga gtgcggcggg
     5701 gctggggata gaagaatatt gtgcttttaa atttagcaat atcttacatg aaatgggttc
     5761 attttctttt agcggatctt ttctacctca ttatgcaaaa gttggaaggt attgttcaat
     5821 tgctgatggg gtttctatgt ttaactttca acaccctata gatagaatca gcactgcaag
     5881 ttttacctat gaaacaaatc atagttttat taacgatgct tgccaaaatc acatcaacaa
     5941 aacatttcct atagttaacc ataatccaag ctcatcaata acgcatttaa ttatacaaga
     6001 tgatgtttgg ataggaaaag atgttttgct taaacagggt atcacacttg ggactggatg
     6061 tgtcatagga caaagagctg tagttactaa agatgtacca ccttatgcta tagttgcagg
     6121 aattccagcc aaaattatca aatatagatt tgatgaaaaa acaatagaaa gattattaaa
     6181 aattcaatgg tggagatatc attttgctga tttttatgat attgatctta atttaaaaat
     6241 aaaccaatat cttgacctac tagaaaaaaa a
//
LOCUS       DAZBIH010000088         6125 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.089, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000088 DAZBIH010000000
VERSION     DAZBIH010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 6125)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6125)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6125
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.089"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..196)
                     /locus_tag="ACHFOB_001407"
     CDS             complement(<1..196)
                     /locus_tag="ACHFOB_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800188.1"
                     /translation="MSLLKNSSYILTLLSLFGFLLTWQRTVFSLFFLIPIFLTLFWEF
                     FLFLKLRKNIIKEATLIKGSL"
     gene            complement(177..2120)
                     /gene="ligA"
                     /locus_tag="ACHFOB_001408"
     CDS             complement(177..2120)
                     /gene="ligA"
                     /locus_tag="ACHFOB_001408"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003911 - DNA ligase (NAD+) activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HFN5800189.1"
                     /translation="MKKEEYLEKVALANLWMRAYYEKDEPLASDEEYDVLIRELRVFE
                     EQNKDEISKDSPTQKIAPTIQSEFKKIAHLKRMWSMEDVFDESELRAWAKRAKCEKNF
                     FIEPKFDGASLNLLYENGKLVSGATRGDGEVGEDITLNVFEIENIPKNIAYKERIEIR
                     GEVVILKDDFEKINEKRALLNQSLFANPRNAASGSLRQLDTSITKERNLKFYPWGVGE
                     NTLNFTKHSEVMQFIRELGFLKDDFIKLCANLDEVLKAYDELLALREKKPMMMDGMVV
                     RIDDLALCEELGYTVKFPKFMAAFKFPALEKTTRLIGVNLQVGRSGVITPVAVLEPVN
                     LDGVVVKSATLHNFDEIARLDVKINDFVSVIRSGDVIPKITKVFKDRREGLEMEISRP
                     KLCPTCQSELLDEGTLIKCQNIDCEDRLVNSIIHFVSKKCLNIDGLGENIVELLYKHK
                     KITTLESIFHLKFSDFEGLEGFKEKKINNLLNAIEQARECELFRFITALGIEHIGEVA
                     AKKLSLSFGKEWHKQSFEAYANLEGFGEQMALSLCEFTRVNHVRIDEFYKLLNLKIEK
                     LEIKSDGVIFGKTFVITGTLSRPRDEFKALIEKLGGKVSSSVSKKTDYVLFGEEAGSK
                     LIKAKELEVKCIDESAFNELVKE"
     gene            complement(2121..3263)
                     /gene="folP"
                     /locus_tag="ACHFOB_001409"
     CDS             complement(2121..3263)
                     /gene="folP"
                     /locus_tag="ACHFOB_001409"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HFN5800190.1"
                     /translation="MKFFKINPNTDFNLLCSFINPHKMGQKIMSEKTKIHFIFIKDIS
                     TPAANILKQDALRVGAELITHKEVITAKITHSNALLMASKEQIQKLIAKEKLQDFGLK
                     NLALFLQKDFLKPKKAELMAVINVNEDSFNAKSRVSEEDFEKRLNDFLALKPEYIDIG
                     AVSSRPGSEYCGKEEEFKRLKKVLDLIYEKNYYEQAIFSLDSFDEYCLEYALNKGFKL
                     INDITSLRNLNLAKLASKYGAKYCLMHMQNNPNNMQDNPFYEDLLDEMTLFFKEKLEL
                     LESFGVKESILDVGIGFGKSAGHNMILIKHLEHFLQFNKPLLIGASRKSVINAYFQSE
                     IKDRLAGTLYLHLKAFENGASIIRVHDLYEHKQLFALAQAMDNIGV"
     gene            complement(3265..3864)
                     /locus_tag="ACHFOB_001410"
     CDS             complement(3265..3864)
                     /locus_tag="ACHFOB_001410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HFN5800191.1"
                     /translation="MFISKIIISEDFLGIKEEMINNFGIKKLRFFMPQNEFLLDDARA
                     VEKESYIAETEEKIIVLMADSYRIEAQNFLLKLLEEPPKNIKFLIVIPSKNLLLPTIK
                     SRLICEKRKVEKEVKKLDLDLKRMDLRMLFDFLQKNENLDKNELMDQIALLAKECVKY
                     KDFNAEELEFFYESYELAKLNSKSGVLLATLLLNYYTKK"
     gene            complement(3870..4406)
                     /locus_tag="ACHFOB_001411"
     CDS             complement(3870..4406)
                     /locus_tag="ACHFOB_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HobA family DNA replication regulator"
                     /protein_id="HFN5800192.1"
                     /translation="MSDFLSFTLENIRNGGAFMAWLESRRLEWAPLMAARLKYLLEGR
                     TFVLMCDEQRSWYEEYFLKNINSKAARPMLPFVSLNSLCKKKVQSSEDIALLNDLLDI
                     SFPNGYVYFYIGSASDNKSLIAKSRDDSLLWLFDEQLQDSFYLNSKDKDLDIKLISLY
                     QLFDVSLDAILFSRVQLG"
     gene            complement(4407..5609)
                     /locus_tag="ACHFOB_001412"
     CDS             complement(4407..5609)
                     /locus_tag="ACHFOB_001412"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004072 - aspartate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HFN5800193.1"
                     /translation="MLIVQKYGGTSVGTLERIEAVANRVIQSAQQGNQLVVVVSAMSG
                     VTNTLIEQAEYFSKTPNGKDMDMLLSSGERVTSALLSIALNEKGYPAISFSGRKAGII
                     TDSVFTKARIHHIDTKAIKSELQNGKIVVIAGFQGVDEEGNVTTLGRGGSDLSAVAVA
                     GALNADLCEIYTDVDGVYTTDPRIEPKAKKLDKISYEEMLELASLGAKVLQNRSVELA
                     KKLNVNLVTRSSFNNNEGTMITKEDGMEQALVSGIALDKNQARVTLRNVEDKPGIAAE
                     IFSVLANENINVDMIIQNVGVDGATNLGFTVPQNELELAKNAMQKILSSKTTIESDSA
                     VVKVSIVGVGMKSHSGVASKAFKALADEGINIGMISTSEIKISMIVHEKYGELAVRAL
                     HECYGLDK"
     gene            complement(5611..6081)
                     /locus_tag="ACHFOB_001413"
     CDS             complement(5611..6081)
                     /locus_tag="ACHFOB_001413"
                     /EC_number="3.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA pyrophosphohydrolase"
                     /protein_id="HFN5800194.1"
                     /translation="MENEKNYRPNVAAIVLSSSYPFECKIFIAKRSDMDNIWQFPQGG
                     IDKGESVKNALFRELKEEIGTDEVEIIAEYPEWLSYDFPSKIVKKMYPYDGQIQKYFL
                     VRLKHGATININTKHPEFDDYQFVSVKQIFEMINHFKKNIYVKVIKYFEEKGYI"
BASE COUNT         2002 a         1229 c          702 g         2192 t
ORIGIN      
        1 acaaacttcc cttaatcaaa gtagcttctt ttataatatt ttttctaagc tttaaaaata
       61 aaaagaattc ccaaaaaagt gttaaaaaaa taggaattaa aaaaaataaa gaaaaaacag
      121 tcctttgcca agttagcaaa aagccaaaaa ggcttaaaag cgttaaaata taagaactat
      181 tctttaacaa gctcattaaa agcactttca tctatacatt ttacttcaag ctctttagcc
      241 ttaatcagct tagaacctgc ctcttctcca aaaagcacat agtcagtctt tttagaaacc
      301 gaactactta ccttacctcc aagcttttct attaaagcct taaactcatc tcttgggcgt
      361 gaaagagtgc ctgtaatcac aaaagtttta ccaaaaatca cgccatcgct tttgatttca
      421 agtttttcta ttttcaaatt taaaagcttg taaaactcat caattcttac atgattaaca
      481 cgcgtaaatt cgcaaagact taaagccatt tgctctccaa aaccttctaa attggcataa
      541 gcttcaaagc tttgcttgtg ccactcttta ccaaaactta agcttaattt tttagccgca
      601 acctcgccaa tatgctctat tcctaaagct gtgataaaac gaaaaagctc acactctctt
      661 gcttgttcta tagcatttaa aagattgtta attttctttt ccttaaagcc ttccaaacct
      721 tcaaaatcac taaattttaa atgaaaaatg ctctcaagag tagtgatttt tttgtgtttg
      781 tataaaagct ctactatatt ttctccaagc ccgtcgatat taagacattt tttagaaaca
      841 aaatgaatga tagaatttac aagtctatct tcacagtcta tattttgaca ttttattaaa
      901 gttccttcat ccaaaagctc actttggcaa gtaggacaaa gcttagggcg tgaaatttcc
      961 atctctaaac cttctctacg atctttaaaa accttagtga ttttagggat aacatcgcca
     1021 cttcttatca cgcttacaaa atcattgatt ttaacatcaa gtcttgcaat ctcatcaaaa
     1081 ttatggagtg tggctgattt tactacaacc ccatctaaat ttacaggttc taaaaccgcc
     1141 acaggagtga tcactccact tcttcccact tgtaaattta cacctattaa acgcgtggtt
     1201 ttttcaagtg caggaaattt aaaagctgcc ataaattttg gaaattttac cgtataacct
     1261 aattcttcac aaagtgcaag atcatcaatt cttaccacca ttccatccat catcataggc
     1321 tttttttctc ttagagctaa aagctcatca taagctttta aaacctcatc taaattagca
     1381 caaagcttaa taaaatcatc ttttaaaaaa ccaagctctc tgataaattg catcacctcg
     1441 ctatgcttgg tgaaatttaa ggtattttcc cctactcccc aaggataaaa tttcaaattt
     1501 ctttctttag tgatgcttgt atcaagctgc cttaaactcc cgcttgcagc attgcgtgga
     1561 ttggcaaata aactttgatt taaaagggct cttttttcgt tgattttctc aaaatcatct
     1621 tttaaaatca ccacttctcc acgaatttct atcctttctt tataggctat atttttaggt
     1681 atattttcta tctcaaaaac attaagcgtt atatcctcac ccacttcgcc atcgccccta
     1741 gtggcaccgc ttactaattt accattttca taaagcaaat ttaaactcgc tccatcaaat
     1801 ttaggctcta taaaaaagtt tttttcacat tttgcgcgtt ttgcccaagc cctaagctca
     1861 ctctcatcaa acacatcttc catcgaccac atacgcttta aatgagctat ttttttaaac
     1921 tcgctttgta tagtaggggc tattttttgc gttggagagt cttttgaaat ttcatcttta
     1981 ttttgttctt caaaaactct taattctctg attaaaacat cgtattcttc atcgctagcc
     2041 aagggttcat ctttttcata atatgccctc atccacaaat tggctaaagc aactttttct
     2101 aaatactctt cttttttcat ctaaactcct atattatcca ttgcctgcgc taaagcaaaa
     2161 agttgtttat gttcatataa atcatgcact cttataatac tagcaccatt ttcaaaagcc
     2221 tttaaatgca aatacaaagt tcccgctaaa cgatctttaa tctcactttg aaaatacgca
     2281 ttaatcacac ttttacgact cgcacctata agtaaaggtt tattaaattg caaaaaatgt
     2341 tctaagtgtt tgattaaaat catattatgc cccgcactct ttccaaagcc aatacccaca
     2401 tctaaaatac tttcttttac tccaaaactt tccaaaagct caagtttttc tttaaaaaac
     2461 aaagtcatct catcaagcaa atcttcataa aaaggattat cttgcatgtt atttggattg
     2521 ttttgcatgt gcattaagca atattttgcc ccatatttac ttgcaagttt ggctagatta
     2581 agatttctta aacttgtaat atcattaatg agtttaaaac ccttatttaa agcatattct
     2641 agacaatatt catcaaaact atctaaacta aaaattgctt gttcgtaata atttttctca
     2701 taaattaagt caagtacttt tttcagtctt ttaaattcct cttccttacc acaatactca
     2761 ctcccaggtc ttgaactaac cgcacctata tcgatatatt caggctttaa agcaagaaag
     2821 tcattaagcc ttttttcaaa gtcttcttca ctcacacgac tttttgcatt aaaactgtct
     2881 tcattgacat taatcactgc cataagctca gctttttttg gttttaaaaa atctttttgc
     2941 aaaaaaagag ccaaattttt aagtccaaaa tcttgaagtt tttctttagc aataagcttt
     3001 tgaatttgct ctttacttgc cattaaaagt gcatttgaat gagtgatttt tgcagtaatt
     3061 acttctttat gagtaataag ttcagctcct actcttaaag catcttgttt taaaatattt
     3121 gccgcaggag tagaaatatc tttgataaaa ataaaatgaa tttttgtttt ttcactcata
     3181 atcttttgtc ccattttatg agggtttatg aaagaacaaa gcaaattaaa atcggtgttt
     3241 ggattgattt taaaaaattt cattttattt ctttgtatag taatttagca aaagagtagc
     3301 taaaagcacc ccgcttttag aatttaattt tgcaagctca taactttcat aaaaaaactc
     3361 taattcttca gcgttaaaat ctttatattt cacacattct ttagcaagca atgcgatttg
     3421 atccataagt tcatttttat ccaaattttc atttttttgc aaaaaatcaa aaagcattct
     3481 taaatccatt cttttaagat ctaaatcaag ttttttaact tccttttcaa cttttctttt
     3541 ttcacaaata agacgtgatt ttatagtagg taaaagtaaa tttttagaag gtatcacaat
     3601 aagaaattta atattttttg gaggttcttc aagaagttta agtaaaaaat tttgtgcttc
     3661 tatcctataa gaatccgcca ttaaaacaat aattttttct tcggtttctg cgatatagct
     3721 ttctttttca actgctcttg catcatcaag taaaaattca ttttgtggca taaaaaatct
     3781 taatttttta ataccaaaat tattaatcat ttcttcttta atacctaaaa aatcttcact
     3841 gataataatc ttactaataa acaaaatatt tatcctaatt gcaccctgga aaataatatt
     3901 gcatccaaac ttacatcaaa aagttgatat aaactaataa gcttgatatc caagtcttta
     3961 tctttagaat ttaaataaaa actatcttgt aactgctcat caaaaagcca caataaacta
     4021 tcatctcttg atttagcgat taaagattta ttatcagaag cacttcctat ataaaaatac
     4081 acataaccat taggaaaaga aatgtcaagc aagtcattaa gtaaagctat atcttctgaa
     4141 ctttgtactt tcttcttgca taaagaattt aacgacacaa aaggaagcat gggacgagcg
     4201 gcttttgaat ttatattttt taaaaaatac tcttcatacc aagatctttg ttcatcgcac
     4261 attaagacaa aagtgcgtcc ctctaaaaga tatttaagtc ttgcagccat caaaggagcc
     4321 cattctaaac gacgcgactc caaccatgcc ataaaagctc cgccattgcg aatattttca
     4381 agagtaaaac ttaaaaaatc actcatttat ttatcaagtc cgtagcactc atgtagtgct
     4441 ctaactgcaa gttctccgta tttttcatga actatcattg aaatttttat ttcactagta
     4501 gaaatcatac cgatattaat cccctcatca gctaaagctt taaaagcttt acttgccact
     4561 cctgaatgtg atttcatgcc tacgccgact atagaaactt ttactacagc actatcactt
     4621 tctatagttg tttttgagct taaaattttt tgcatagcat ttttagctaa ttcaagttca
     4681 ttttgaggaa ccgtaaaacc caaatttgta gcgccatcaa ctccaacatt ttgtataatc
     4741 atatctacat taatattttc atttgctaaa acagaaaaaa tttcagctgc gattccaggc
     4801 ttatcttcta catttcttaa agtcactctt gcttgatttt tatccaaagc aataccactt
     4861 actaaagctt gttccattcc atcttccttt gttatcattg ttccttcgtt attgttaaaa
     4921 ctacttctag ttactaagtt aacatttaat ttttttgcaa gctctacaga gcgattttgc
     4981 aaaacttttg cacccaaact tgcaagttca agcatttctt cataagaaat tttatccaat
     5041 ttctttgcct ttggttcaat tcttggatct gttgtataaa ccccatcaac atcggtataa
     5101 atttcacaca aatccgcatt taaggcacct gctaccgcca cagcacttaa gtcgcttcca
     5161 ccacgcccta aggtagttac attaccttcc tcatctacac cttgaaaacc tgctataacg
     5221 actattttac cattttgaag ttctgatttt atcgcttttg tatcaatatg atgaattctt
     5281 gcctttgtaa aaacactatc cgtaataatt cccgcttttc ttccagaaaa tgatatagca
     5341 ggataaccct tttcatttaa agcaatagaa agtaaagcgc ttgttacacg ctctccgcta
     5401 cttaaaagca tatccatatc tttaccatta ggagttttac taaaatattc agcttgctcg
     5461 ataagagtat ttgtcacccc actcattgca gatactacaa caacaagttg attaccctgt
     5521 tgcgcacttt ggataaccct attggctact gcttcaatac gctcaagtgt tccaacgctt
     5581 gttccaccat atttttgaac tataagcatt ttagatataa cctttctctt caaaatattt
     5641 gatcacttta acataaatat tttttttgaa atgattaatc atttcaaaaa tttgtttaac
     5701 actcacaaat tgataatcat caaattcagg atgcttagta ttgatattga ttgtagcacc
     5761 gtgttttaaa cgcactaaaa aatatttttg aatctgtcca tcataaggat acattttttt
     5821 aacaatttta ctcggaaaat cataactcaa ccattctgga tactcagcaa tgatttcaac
     5881 ctcatcagtg cctatttctt cttttagttc tctaaataaa gcgtttttga cactttcacc
     5941 tttatcaata cctccttgtg gaaattgcca aatattatcc atatcacttc ttttagctat
     6001 aaaaatctta cactcaaaag gataagaact tgataaaaca atagctgcaa catttggtct
     6061 ataatttttc tcgttttcca caatattttt ccttaaatct caagaatata attttaacct
     6121 aaatc
//
LOCUS       DAZBIH010000089         5842 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.090, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000089 DAZBIH010000000
VERSION     DAZBIH010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5842
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.090"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..658
                     /locus_tag="ACHFOB_001414"
     CDS             <1..658
                     /locus_tag="ACHFOB_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004305554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800195.1"
                     /translation="FFSKMKERKKEENKKTKKIFSFGRKKINEIKNIQTKPKIQTKND
                     QNPIQDKKEKKESIKSIEKIQKTEPKIQNSQTIEKRSDIKKQPDIKQSLENLQKKITP
                     QENKQELPKSSNQAQEKQQNDEDAQKAKNVLLEGFSNATKEDRNLNFNHLLFAALLVS
                     FALFLFAPQIYIRNQIYYLSREIATLRTEESVLNEENKDLKRRLENMRFQNQILDYLE
                     "
     gene            complement(646..1137)
                     /locus_tag="ACHFOB_001415"
     CDS             complement(646..1137)
                     /locus_tag="ACHFOB_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800196.1"
                     /translation="MKKFKEFSLRFLFKVSEQPVLVKDLLEANALFNDGMLVDPSKLN
                     FNFKILNSYIYFGVFCAVVLLPLLLITHYFLTKLDFHISIVSAVMVTACVFIGYDIFK
                     VYTRKIISKKIIQKAWALHFPYFAYEKYSIMAGEIYKEALKEEIPKANLEQYVLDKII
                     HSR"
     gene            complement(1208..2395)
                     /locus_tag="ACHFOB_001416"
     CDS             complement(1208..2395)
                     /locus_tag="ACHFOB_001416"
                     /EC_number="2.7.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008776 - acetate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006085 - acetyl-CoA biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HFN5800197.1"
                     /translation="MKILVLNSGSSSIKFKFFDNKVVKASGLVEKIGEQNSKVVLKNT
                     LNNESFERELTINNHEEGLSIVNELFKESGILADLNALDGCGHRIVHGGRNLSEHCLV
                     DDYVLKEIDRVSIFAPLHNPAHLAGIKTMIKAAPSVANAAIFDTAFHRTIPDFAYMYA
                     LPYDFYDKHNIRRYGFHGTSHAYVSSRAAKFLQKDQNELNVISAHLGNGASVCAIEKG
                     KSMDTSMGFTPLEGLIMGTRCGDIDPAILPFISHLKGLTIEEIDTLMNKKSGVYGICG
                     YNDFRDIEREIEQGNDKARLALDMFCYRLVKYIGAYFAILPKTDAIIFTGGIGENDSL
                     VRQKVCERLAHLGIELDFELNKQRISGERMINHVNSKVKVLVIPTDEELEIARITEEL
                     ISN"
     gene            complement(2409..3914)
                     /gene="pta"
                     /locus_tag="ACHFOB_001417"
     CDS             complement(2409..3914)
                     /gene="pta"
                     /locus_tag="ACHFOB_001417"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016407 - acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HFN5800198.1"
                     /translation="MMANLYLMRSRSDELNTIISTNLLKNYSKIYKNIAIYCPVIYIH
                     RVPVLQGWLEEFNINQTVKSAYGFTFREAMEEFSKDPHNFFNVILEEYEELKRKYDFV
                     LVNSFCEFGILDGFDLSIKLAKNLNTPIAAIINDEDKLIAQKYFDHALDGRNYVLINE
                     NFNFEEVQKLEEYDFITPHRFKYELIKQSVKNKKTVVLPESNDERILKAAEILLKSKV
                     VDLILLGDEEKIKQDATRLSLDLSAMQIMNPLNSEYNQEFTSILYEARKSKGMSLEEA
                     KMLVQDKTYFGTLLIHTGKADAMVSGASTTTAETIRPALQLIKTKEGISSVSGIFFMG
                     LEDQVLAFADCAVNPSPTAEQLATSAYVSAMTAKSFGLEPRIALLSYSSGDSGKGESV
                     DLVKEALKIAKEKYPELNIDGPMQFDCAYDPKTAAKKMPNSKIAGHANVYIFPDLNAA
                     NICYKAVQRTANALAIGPILQGLKKPVNDLSRGCLVDDIVDTVILSAIQAQ"
     gene            4004..4702
                     /gene="flgH"
                     /locus_tag="ACHFOB_001418"
     CDS             4004..4702
                     /gene="flgH"
                     /locus_tag="ACHFOB_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body L-ring protein FlgH"
                     /protein_id="HFN5800199.1"
                     /translation="MKKVLFYVLPFAFFGCSATVDPQISMKPPAYVEELAPKQSNNVE
                     SAPGSLFGKGDNPLFSDKKAMNVNDLVTVVIQESTTQSTQANKATSRTNTSNLGGGAL
                     TGSSGVVANALNKVNAYSNIGFQTNSSNNYTGTGSQSRNESFNTTISTRVIKILSNGN
                     YFIEGSRELLINGEKQIIQLSGVIRPYDIGQDNTIDSKYIADAKILYKTEGEVDRSTR
                     KPWGSKVIEAIWPF"
     gene            complement(4732..5805)
                     /gene="ispG"
                     /locus_tag="ACHFOB_001419"
                     /gene_synonym="gcpE"
     CDS             complement(4732..5805)
                     /gene="ispG"
                     /locus_tag="ACHFOB_001419"
                     /gene_synonym="gcpE"
                     /EC_number="1.17.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl
                     diphosphate synthase activity (ferredoxin) [Evidence IEA];
                     GO_process: GO:0044237 - cellular metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HFN5800200.1"
                     /translation="MEYKRFKTRQIKVGNVLIGGDAPISVQSMLFTKTRDIEGSLEQI
                     NRLYFAGANIVRLACLDMADARALKEIKAKSPLPLIVDIHFNHNLAVYCAEFIDGVRI
                     NPGNIGSKENIKEVVKACKERGIPIRIGVNHGSIEKQFSDKFGYGVDAMLESAMYNIK
                     LLEDLDFFDIKISMKTSDAQKTIEAYERLRPLCDYPFHLGVTEAGTKFHSTVKSSIAL
                     GNLLLKGIGDTMRVSMTGELEEEIRVARAILQDSGVQKSGVNIISCPTCGRIQSDLLS
                     AIKIVEEKTKHIKEPLNISVMGCVVNALGEAKGADVAIAFGKNQGLVIRHGEVVAKLK
                     ESELVDRFLAEVEDEVKSRAVKE"
BASE COUNT         2088 a         1053 c          761 g         1940 t
ORIGIN      
        1 atttttttcc aaaatgaaag aaaggaaaaa agaagaaaat aaaaaaacta aaaagatttt
       61 ttcgtttgga agaaaaaaaa taaacgagat aaaaaatatt caaaccaaac caaaaattca
      121 aacaaaaaat gatcaaaacc ctatccaaga taaaaaagaa aaaaaagaat ctataaaatc
      181 tatagaaaaa attcaaaaaa ctgaacctaa gatacaaaat tctcaaacta tagaaaaacg
      241 atctgatatt aaaaaacaac ccgatattaa acaaagtttg gaaaatttac aaaaaaaaat
      301 aacaccacaa gaaaataaac aagaacttcc aaaatcatct aatcaagctc aagaaaaaca
      361 acaaaatgat gaagatgctc aaaaggcaaa aaatgtttta ctagaaggct tctctaatgc
      421 caccaaagaa gatagaaacc taaatttcaa tcatcttctt tttgcggctt tacttgttag
      481 ttttgcgtta tttttatttg ctccacaaat ttatatcaga aatcaaattt attatcttag
      541 tagagaaatt gctacattaa gaacagaaga aagtgtttta aacgaagaaa ataaagactt
      601 aaaaagaaga cttgaaaata tgcgatttca aaatcaaatt ttagattatc tagaatgaat
      661 aatcttatct aaaacatact gctctaaatt tgcttttgga atttcttctt ttaaggcttc
      721 cttataaatt tcacctgcca ttatagagta tttttcataa gcaaaataag ggaaatgcaa
      781 agcccaggct ttttgtatta ttttttttga gattatttta cgagtataaa ctttaaaaat
      841 atcatatcct ataaatacac aagcagtaac cataacagca ctcactatgc ttatatgaaa
      901 gtcaagtttt gttaaaaaat aatgagtaat taaaagcaat ggcaacaaaa ccacagcaca
      961 aaaaacacca aaataaatat aagaatttag aattttgaaa ttaaaattta gcttagaagg
     1021 atctacaagc ataccgtcat taaaaagtgc atttgcctct aataaatcct tcactaaaac
     1081 aggttgttct gatactttaa ataaaaaacg aaggctaaat tctttaaatt ttttcataat
     1141 ccatgcttta ttttttaatt aaaattttat ctaaacaaaa ttaattttta ctaaatataa
     1201 acctctttca attgcttatt aattcttctg taattctagc gatttctaat tcttcatctg
     1261 taggaataac aagcacttta actttagaat ttacatgatt tatcattctt tcgcctgaaa
     1321 tcctttgttt gttaagttca aaatctaact cgataccaag atgagctaat ctctcgcata
     1381 ctttttgtcg aaccaaacta tcattttctc ctataccacc agtaaaaata atagcatcgg
     1441 tttttggtaa tatagcgaaa taagctccta tgtattttac aagacgataa caaaacatat
     1501 caagagccaa gcgtgcttta tcattacctt gttctatctc tctttctata tctctaaaat
     1561 cattataacc acaaattcca tatactccgc tttttttatt cattagagta tctatttctt
     1621 ctatagttaa acccttaaga tgactaataa aaggtaaaat agcaggatct atatctccac
     1681 aacgcgttcc cataataagt ccttcaagcg gagtaaagcc catagaagta tccatactct
     1741 tacctttttc tatagcacat acacttgcac catttccaag atgagcagag atgacattta
     1801 attcattttg atctttttga agaaattttg ccgctctaga actaacataa gcatgagaag
     1861 tcccatgaaa accatatctt ctaatattat gcttatcata aaaatcataa ggcaaagcat
     1921 acatataagc aaaatcaggt atagtgcgat gaaaagctgt atcaaaaata gctgcattag
     1981 caacactagg tgcagctttg atcattgttt ttatacctgc taaatgcgca ggattatgca
     2041 aaggagcaaa aatactaacc ctatctatct ctttaagaac atagtcatct actaaacaat
     2101 gctcgcttaa atttcttccc ccatgaacta tacgatgacc gcagccatca agcgcattta
     2161 aatctgctaa aattcctgat tctttaaaaa gctcattaac tatactaagg ccttcttcgt
     2221 gattatttat tgttaattct ctttcaaaac tttcattatt taaagtattt tttaatacaa
     2281 cctttgaatt ttgctctcca attttctcta ctaagccact cgctttaacg actttattat
     2341 caaaaaattt aaatttaatc gatgaagaac ctgaatttaa aactaaaatt ttcatttatc
     2401 attcctttct attgagcttg tattgcactt aaaattacag tatctacaat atcatctacc
     2461 aaacatccac gacttaaatc attaacaggt tttttaagac cttgcaaaat aggaccgatt
     2521 gctaaagcat tagcagttct ttgaactgct ttgtaacaaa tatttgctgc gttaagatca
     2581 ggaaaaatat acacatttgc atgacctgct atcttagaat ttggcatttt ctttgctgca
     2641 gtttttggat cataagcgca gtcaaactgc ataggaccat ctatattcaa ctcaggatat
     2701 ttttctttag caatctttaa tgcttctttt acaagatcta cgctttctcc tttaccgcta
     2761 tcaccactag aataagaaag caaagctatt cttggttcaa gtccaaaaga tttagcagtc
     2821 atagcactta cataagcact agttgcaagc tgttcggcag ttggacttgg atttacagca
     2881 caatcagcaa aagctaaaac ttgatcttca agccccataa agaaaattcc tgaaacggaa
     2941 ctaatacctt ctttggtttt aataagctgt aatgctgggc gaatcgtttc agctgtagta
     3001 gttgatgctc cactaaccat agcatcagct tttccagtat gtataagcaa agttccaaaa
     3061 taagttttat cctgaactag catcttagcc tcttctaaac tcatgccttt agattttctt
     3121 gcttcataaa gaatagaagt aaattcttga ttatattctg aattaagtgg attcataatt
     3181 tgcatagcac ttaaatcaag acttaatcta gtagcatctt gtttgatttt ttcttcatcg
     3241 cccaataaaa taagatcaac aactttactt tttaataaaa tttcagcagc ttttaaaatt
     3301 ctctcatcat tactttctgg taaaacaaca gtttttttat tttttacgct ttgtttaatc
     3361 aattcatatt taaaacgatg cggagttata aaatcatact cttcaagctt ttgcacttct
     3421 tcaaaattaa aattttcatt aatcaaaaca taattacgac catctagggc atgatcgaaa
     3481 tatttttgag ctataagttt atcttcatcg ttaataatag cagcgatagg ggtattaaga
     3541 tttttagcta attttatact aagatcaaat ccatcaagta ttccaaattc gcaaaaacta
     3601 tttacaagca caaaatcgta tttgcgtttt aactcttcgt attcttctaa aataacatta
     3661 aaaaaattat gaggatcttt gctaaattcc tccattgctt ctctaaaggt aaaaccatag
     3721 gcgcttttta cagtttgatt gatattaaat tcttccaacc aaccttgtaa aacagggacg
     3781 cgatgtatgt atattacagg gcaataaatt gcgatatttt tgtaaatttt gctataattt
     3841 ttaagcaaat ttgtactaat aatagtattt aactcatcac ttctagatct catcaaataa
     3901 agatttgcca tcattttctc cttgaattta taaatgtgga acactctttg ctttttctaa
     3961 ttttaacaaa gaaaaataaa aattcatatt ttaaaggacg aaaatgaaaa aagttttatt
     4021 ttatgtgtta ccgtttgcat tttttggttg ttctgcaacg gttgatccgc aaatttcaat
     4081 gaaaccacct gcttatgtag aagaacttgc accaaaacaa agcaataatg tagaaagtgc
     4141 accaggatcg ctttttggca aaggggataa tcctttattt tcagataaaa aagctatgaa
     4201 tgtaaatgat ttagttacag ttgttataca agaaagtacc actcaaagca cacaagctaa
     4261 taaagcaaca agtagaacta atacctcaaa tttaggcgga ggtgctttaa caggaagttc
     4321 aggagtggta gctaatgctc ttaataaagt caatgcttat tctaatatag gctttcaaac
     4381 caatagttca aacaattaca caggaacagg ctcacaaagt agaaatgaaa gtttcaatac
     4441 tacaatttca acacgtgtaa ttaaaatttt atcaaatggt aattatttta tcgaaggttc
     4501 aagagagctt ttaatcaacg gagagaagca gatcatacaa ttaagcggtg ttattcgtcc
     4561 ttatgacatc ggtcaagaca atactataga tagtaaatat atagcagatg ctaaaattct
     4621 atataaaaca gaaggagaag tggatagaag cacaagaaaa ccttggggta gtaaagttat
     4681 agaagcgata tggccattct aaaagcaagg ttaaaccttg cttttaggct tttattcttt
     4741 tacagccctg cttttaacct catcttcaac ttcagctaaa aatctatcta caagttcact
     4801 ttcttttaat ttagctacaa cttcaccatg tcttatgaca agtccttgat ttttcccaaa
     4861 ggctatagcc acatcagcgc ccttagcttc gcctaaagca tttaccacac aacccatgac
     4921 actgatgttt aaaggttctt ttatatgctt ggttttttcc tctacgattt taatcgcact
     4981 taacaaatca ctttgaatcc taccgcaagt tggacatgaa ataatattta ctccgctttt
     5041 ttgtactccg ctatcttgca aaattgctct tgctacacga atttcttctt caagctcacc
     5101 cgtcatagaa acacgcatag tatcgcctat acctttaaga agtaaatttc ctaaagctat
     5161 agaacttttt acagtgctat gaaatttagt tcctgcttca gttaccccta agtgaaaagg
     5221 ataatcacaa agcggtctta atctctcata agcttctata gttttttgag catctgaagt
     5281 cttcatggaa attttaatat caaaaaagtc taaatcctct aaaagcttga tattatacat
     5341 cgcactttct agcatggcat cgacaccata accaaattta tcactaaatt gtttttctat
     5401 ggagccgtga tttacaccga tgcgtatagg gataccccgt tctttacatg cttttaccac
     5461 ttctttaata ttttctttag agcctatatt gccaggattt atacgcacgc catcgataaa
     5521 ttcagcacaa tatacagcca aattatgatt aaaatgaata tctacgatta aaggtagagg
     5581 acttttagct ttaatctctt ttaaagccct tgcatcagcc atatccaagc acgccaaacg
     5641 cactatgttt gctcctgcaa aataaagacg attgatttgt tctaaagaac cttctatgtc
     5701 tcttgtttta gtaaaaagca tagattgaac tgaaatgggt gcatcaccgc ctattaaaac
     5761 atttcctact ttgatttgtc tggttttaaa tcttttatac tccataactt cactctttga
     5821 aaaattttaa tatcaaattt ta
//
LOCUS       DAZBIH010000090         5804 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.091, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000090 DAZBIH010000000
VERSION     DAZBIH010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5804)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5804)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5804
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.091"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..552
                     /gene="folE"
                     /locus_tag="ACHFOB_001420"
     CDS             <1..552
                     /gene="folE"
                     /locus_tag="ACHFOB_001420"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HFN5800201.1"
                     /translation="CVKTMLEIIGENPNREGLIKTPNRVFKTYEFLTSGYTQNVKEIL
                     NDALFESSNNEMVLVRDIEFYSLCEHHLLPFFGRAHVAYIPNKKVVGLSKIPRLVEVF
                     ARRLQIQEQLTEQIAQALMENVDAKGVGVVIEARHMCVEMRGVQKANSTTTTSALRGI
                     FLKNEKTREEFFSLINSAKQVRF"
     gene            552..1937
                     /gene="fliI"
                     /locus_tag="ACHFOB_001421"
     CDS             552..1937
                     /gene="fliI"
                     /locus_tag="ACHFOB_001421"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030257 - type III protein secretion
                     system complex [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0030254 - protein secretion by the type III
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HFN5800202.1"
                     /translation="MNLEKLRSKLGKENLSAIFGEITKISATSIEIRGLKTGVGDIVK
                     LVSNENENLNTLAMVVEIKEQFSYLSPFSFIEGFKIGDRAFISDAGMQIGVSDELLGR
                     VVDPFMRPKDGKGAIEVSKYMPIMRAPIDAMKRGLIEEVFPVGVKTIDALLTCGVGQK
                     LGIFAGSGVGKSTLMGMIVKNSKAPIKVVALIGERGREIPEFIQKNLGGKLDDTVIIV
                     ATSDDSALMRKYGAFCAMSVAEYFKEQGKDVLFIMDSVTRFAMAQREIGLALGEPPTT
                     KGYPPSVLSLLPQLMERTGKEEGKGTITAFFTVLVDGDDMSDPIADQSRSILDGHIVL
                     SRELTDFGIYPPINIQNSASRVMSDIISPEHKLWARKFKRLNSLLKENEVLLRIGAYQ
                     KGSDKELDEAISKKEFMQKFLGQNPEESFEFNQTLELLSQIDTPNTPLPPTQNINVGS
                     ASATLPNPNLK"
     gene            complement(1940..3277)
                     /gene="purF"
                     /locus_tag="ACHFOB_001422"
     CDS             complement(1940..3277)
                     /gene="purF"
                     /locus_tag="ACHFOB_001422"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004044 - amidophosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009113 - purine nucleobase biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HFN5800203.1"
                     /translation="MCAVVGVINSKNASTYAYYALFAMQHRGQEASGISVSNGKNIKT
                     IKAKGEVSQIFNPDNLKTLEGEIAIGHNRYSTAGNSSLNDAQPIAATSVLGDIALAHN
                     GNLVNKEEVRSRLIQDGAIFQTNMDTENVVHLIARSKQESLKDRFIESLKECIGAYCF
                     VLASKDKLYVVRDPHGVRPLSLGRLKDGGYIVASETCAFDLIEAEFIRDVKPGEMLIF
                     TQGNDKFESIELFSQTPRICAFEYIYFARPDSIVEGKSVYEVRKKMGEALAKKFAYKA
                     DFVVPVPDSGVSAAIGFAQYLQIPLEMAIVRNHYVGRTFIEPTQELRNLKVKLKLNPM
                     RKVLEGKEIVVIDDSLVRGTTSKKIISLLRAAGASKIHLAIACPEIKFPDTYGIDTPT
                     FEELISANKNAEEVREYVEADTLSFLSIEELTQSIGDERKYSLISFDGDYFIK"
     gene            complement(3279..4007)
                     /gene="dapB"
                     /locus_tag="ACHFOB_001423"
     CDS             complement(3279..4007)
                     /gene="dapB"
                     /locus_tag="ACHFOB_001423"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008839 - 4-hydroxy-tetrahydrodipicolinate
                     reductase [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HFN5800204.1"
                     /translation="MIKIGIYGAKGRMGKQIEECLKSETQARISILYDKGGNLGELFE
                     KSDVIIDFSSPSGTHELLNYARTMPKPLVIGTTGLDEKILHLMQSASEVMPIFYATNM
                     SLGVAVLNYLASKASQMLRNFDIEILEMHHRHKKDAPSGTAMTLAQSVAKARNLELEK
                     VRVSGRDGIIGERSKDEIAVMSLRGGDIVGRHTVGFYEDGEFLELNHTATSRATFAKG
                     AIKIAIWLSKQEAKMYSINDFLGI"
     gene            complement(4070..5251)
                     /locus_tag="ACHFOB_001424"
     CDS             complement(4070..5251)
                     /locus_tag="ACHFOB_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5800205.1"
                     /translation="MSLALTFRPENFDDILGQYELIEIFKKFTALQKLPHSIFFGTAG
                     SGKTTFARVVAKEFGLDFYEFDGGNFKLEELRKILDNYKNSLYKPLIFIDEIHRLSKT
                     QQEMLLIPMENYRLILIGASTENPYFVLSSGIRSRSMLFEFKSLGAKELETLLLRVQE
                     KMKFSIDKEAKDFLLKSADARAMLNLLEFVLVLDEKHISLENLKKLRNTINSEGVSSK
                     DTHYILASAMIKSLRGSDVDAAIYYLARLIDAGESADFIARRLVIFSSEDVGNADPNA
                     LNLAVSTLDAVKNIGYPEARIILAQCVVYLASTIKSNASYKAINEALNYVKNNEALEI
                     PNYLNNNHQEKQNYLYPHDFGGWVEQKYLSKNLKFYHSKGLGEEAKLLDNLYKLKNHK
                     A"
     gene            complement(5251..>5804)
                     /locus_tag="ACHFOB_001425"
     CDS             complement(5251..>5804)
                     /locus_tag="ACHFOB_001425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800206.1"
                     /translation="NLFSKSQQQINFDYLVLDNNKINSFYSKNLVNFNEENSTINLNI
                     QGKSNEIDIDLKSLLGQNLNFDKTKFNITINKFLNSNFNISHFIQKNLDLEIQNLILE
                     KNKQNISLQGNLNINNSYQAKLQVISSDEPDEIFPWTKDYGGLNQYFLKENNNFFLNL
                     SYDSLANPQLKINGSEFSNMDLN"
BASE COUNT         1908 a          989 c          909 g         1998 t
ORIGIN      
        1 tgtgttaaaa ctatgcttga aattatagga gaaaatccaa atcgtgaagg gcttattaaa
       61 acaccaaatc gtgtttttaa aacttatgaa tttcttacta gtggttatac gcaaaatgtc
      121 aaagaaattt taaatgacgc tttatttgaa agctctaata atgaaatggt tttagtgcgt
      181 gatatagaat tttatagtct ttgcgaacat catcttttac ctttttttgg gcgtgctcat
      241 gtagcctata ttcctaataa aaaagtagta ggtttaagca aaattccacg ccttgtagag
      301 gtgtttgcaa gaagacttca aatccaagaa caactcaccg aacaaatcgc acaagcttta
      361 atggaaaatg tcgatgcaaa aggtgtaggt gtagtcatag aagcaagaca tatgtgtgtt
      421 gaaatgcgtg gagtgcaaaa agctaattca accactacaa cttcagcttt gcgtggaatt
      481 ttcttgaaaa atgaaaaaac cagagaggaa tttttttctc tcataaactc tgctaaacag
      541 gtaagatttt aatgaatctt gaaaaactac gctccaaact tggtaaagaa aatttaagtg
      601 ctatctttgg agagattaca aaaatttctg ctacgagtat agaaattcgt gggcttaaaa
      661 caggggttgg agatatagta aagctagttt ccaatgaaaa tgaaaattta aacactctag
      721 ctatggtcgt agaaatcaaa gaacaattta gctatttaag cccattttct tttatagaag
      781 gttttaaaat aggtgatcgt gctttcataa gtgatgcagg tatgcaaata ggcgttagcg
      841 atgaactttt aggcagagta gtagatcctt ttatgcgtcc aaaagatggt aaaggagcta
      901 tagaagtaag taaatatatg cctataatgc gtgcacctat tgatgcgatg aaaagagggc
      961 ttatagaaga agtttttccc gtgggtgtta aaaccataga cgcgctttta acttgtggtg
     1021 tagggcaaaa acttggtatt tttgcaggaa gcggagtagg aaaatccact cttatgggaa
     1081 tgatagttaa aaattccaaa gctcctataa aggtagtggc actcatagga gaaagggggc
     1141 gtgaaattcc tgaatttata caaaaaaatt taggtggaaa gctcgatgat acagtgatta
     1201 ttgttgctac aagtgatgat agtgctttaa tgcgtaaata cggtgctttt tgcgcaatga
     1261 gtgtggcaga gtactttaaa gaacaaggta aagatgtact ttttatcatg gatagtgtaa
     1321 cacgttttgc tatggcgcaa agagaaatag gactagctct tggggagcct cctacaacca
     1381 aaggttatcc accaagtgtt ttaagtcttt tgcctcaact catggaaaga acgggtaaag
     1441 aagaaggtaa aggcactata acggcctttt ttaccgtttt ggtggatggc gatgatatga
     1501 gtgatccaat cgccgatcaa agtcgttcta tcttagatgg acatattgtt ttaagtcgtg
     1561 aattaacaga ctttggaatt tatcctccta ttaatataca aaactctgct tcaagggtaa
     1621 tgagtgacat tataagtcct gagcataaac tttgggcaag aaaatttaag cgtttaaact
     1681 cgcttttaaa agaaaatgaa gtattgcttc gcatcggtgc ttatcaaaaa ggaagtgata
     1741 aagaacttga tgaagctatt tctaaaaaag aatttatgca aaaattctta ggacaaaatc
     1801 ctgaagaaag cttcgaattt aatcaaactt tagagctttt aagtcaaatt gatacaccaa
     1861 atactccttt gccaccaact caaaatataa atgtaggaag tgcaagtgca accttgccta
     1921 atcctaattt aaaataaaat tatttaataa aataatctcc atcaaaactg attaaagaat
     1981 atttcctttc atcgcctatg ctttgagtta gctcttctat gcttaaaaaa cttagcgtat
     2041 cagcttctac atattcacgc acttcttcag catttttatt tgcactgata agttcttcaa
     2101 aagttggagt atctatgcca taagtatcag gaaatttgat ctcaggacaa gctatggcaa
     2161 gatggatttt gctcgctcct gcagcacgaa gcaaagaaat tattttttta gaagtagtgc
     2221 cacgcaccaa gctatcatca atgactacga tttctttgcc ttctaaaact ttacgcatag
     2281 gattaagttt taattttact tttaaatttc taagctcttg agttggctct ataaaagttc
     2341 ttcctacata atgatttctt actattgcca tttcaagagg gatttgtaaa tattgcgcaa
     2401 aacctatagc tgcacttact ccactatctg gcacaggcac gacaaagtct gctttataag
     2461 caaatttttt agctaaagct tcgcccattt ttttacgcac ttcatacacg cttttgcctt
     2521 ctactatact atcaggtcta gcaaaataaa tgtattcaaa agcgcaaatt ctaggagttt
     2581 gagaaaaaag ttctatgctt tcaaatttat catttccctg agtaaaaata agcatttccc
     2641 ctggtttaac atcacgaata aattcagcct ctataagatc aaaagcacaa gtttcactag
     2701 caactatata gcctccatct tttaaacgcc ctaaagacaa aggacgcacc ccatgaggat
     2761 ctcttacaac ataaagttta tctttgcttg ctaaaacaaa acaataagct cctatacatt
     2821 cttttaaact ctcaataaat ctatctttta gactttcttg cttacttctt gcgataagat
     2881 ggacaacatt ttctgtatcc atattggttt gaaaaatagc cccatcttga ataagtcttg
     2941 atcttacctc ttctttattg actaaatttc cattatgcgc taaagcaata tcacctaaaa
     3001 ccgaagtagc tgctatgggc tgagcgtcat ttaaacttga atttcctgct gtagaatagc
     3061 gattatgccc tatagcgatt tcaccttcta aagtttttag attatcagga ttaaaaattt
     3121 gactcacttc acctttagct ttaatagtct taatattttt accattactc acactaatgc
     3181 cacttgcttc ttgcccacgg tgttgcatag caaaaagcgc ataatacgca taagtgctag
     3241 cattttttga attgataact cctacaactg cacacatttt aaattcctaa aaaatcattg
     3301 attgaataca tttttgcttc ttgcttgcta agccaaatag cgattttaat cgcaccttta
     3361 gcaaaagtcg cccttgaagt agcggtatga ttaagttcta aaaactcacc atcttcgtaa
     3421 aaacctaccg tatggcgtcc tactatatcg ccacccctta aactcatcac ggcaatctca
     3481 tctttacttc tttcacctat aatgccatct cttccactta ctcttacttt ttcaagttct
     3541 aaatttctag cttttgctac actttgagct aaagtcatag ctgtaccact tggggcatct
     3601 tttttatggc gatgatgcat ttctaaaatt tctatatcaa aatttcttag catttgactg
     3661 gctttactag caagatagtt taaaaccgca acacctaaag acatattggt cgcataaaaa
     3721 atcggcatca cttcactagc actttgcatc aaatgtaaaa ttttctcatc aagccctgtt
     3781 gtacctatta ccaaaggttt aggcatagtt cttgcataat ttaaaagctc atgagttcca
     3841 cttggggaag aaaaatcaat aatcacatcg cttttttcaa aaagctctcc taaatttcca
     3901 cccttatcat aaagtatcga aattcgtgct tgtgtttcgc tttttaaaca ttcttcaatc
     3961 tgttttccca ttcgtccttt agcgccataa attcctattt taatcatctt tttccttgaa
     4021 aataaaatat tgattttagc atttattttg taaattttaa ataataaaat taagctttat
     4081 ggttttttaa tttatataaa ttatctaaca attttgcttc ttctcctaag cccttgctat
     4141 gataaaattt taaattttta ctaagatatt tttgctctac ccagccacca aaatcatgtg
     4201 gataaagata gttttgtttt tcttgatgat tgttgttaag ataattaggt atttctaaag
     4261 cttcattatt ttttacatag tttaaagctt cattgatagc tttgtagctt gcattggatt
     4321 tgattgtgct tgctaaataa actacgcatt gggctaggat aattcttgct tcaggataac
     4381 ctatattttt aacagcatct agagtcgaaa ctgctaaatt taaagcattt ggatcggcat
     4441 ttccgacatc ttcacttgaa aaaatcacca aacgcctagc gataaaatcc gcactttctc
     4501 ctgcatcaat aagtcttgca agataataaa tagctgcatc aacgtcactt ccgcgtaaac
     4561 tttttatcat tgcacttgct aaaatataat gtgtatcttt tgagctaaca ccttcactat
     4621 ttatggtgtt gcgaagtttt ttaagatttt caagactgat atgtttttca tctaaaacca
     4681 agacaaattc aagcaaattt agcatagctc ttgcatcagc acttttaagt agaaaatctt
     4741 tagcttcttt atcaatacta aatttcattt tttcctgtac gcgtaagagt aaagtttcaa
     4801 gttcctttgc ccctaaagat ttaaattcaa aaagcatgga gcgacttctt ataccagaac
     4861 ttaaaacaaa atagggattt tcagtgcttg caccaattaa aattaaacgg taattttcca
     4921 taggaattaa aagcatttct tgttgggttt tgctaaggcg gtgaatttca tcaataaaaa
     4981 ttaaaggctt ataaagacta tttttataat tatctaaaat ttttcttagt tcttcgagtt
     5041 taaaatttcc tccatcaaat tcataaaaat ctaagccaaa ttctttggct acaactctag
     5101 caaaagttgt ttttccagaa cctgccgttc caaaaaaaat actatgagga agtttttgta
     5161 aagcagtaaa ttttttgaaa atttctataa gctcatattg tcctaaaata tcatcaaaat
     5221 tttcagggcg aaaggtcaaa gctaggctca ttaatttaaa tccatatttg aaaattcact
     5281 accattaatt tttagttgag gattggctaa gctatcataa gataaattta gaaaaaagtt
     5341 attattttct tttaaaaaat attgatttaa acctccataa tcttttgtcc aaggaaaaat
     5401 ttcatcaggc tcatctgaac tgataacttg taattttgct tgataagagt tgttaatatt
     5461 taaattgcct tgtaaactga tattttgttt atttttttca agaattaaat tttgtatttc
     5521 tagatcaaga tttttttgaa taaaatgaga gatattgaaa tttgagttaa gaaatttatt
     5581 tatggttata ttaaattttg ttttgtcaaa atttaaattc tgacccaata aagatttaag
     5641 atcaatatca atttcattgg attttccttg tatgtttaag tttattgttg aattttcttc
     5701 attaaaattt actagatttt tgctataaaa agaattgatt ttattgttat ctaacacaag
     5761 ataatcaaag ttgatttgtt gttggctttt gctaaataaa ttta
//
LOCUS       DAZBIH010000091         5773 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.092, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000091 DAZBIH010000000
VERSION     DAZBIH010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5773
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.092"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..427
                     /locus_tag="ACHFOB_001426"
     CDS             <1..427
                     /locus_tag="ACHFOB_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800207.1"
                     /translation="IISLSGVEKFDLEEFKRFLESTEAKEKGMGSEVKKALENLEVPK
                     TQVPSVEKITAPSVPNLEAKQVEQLFKDSDEENKNDNGEINIDNLNTPKMTPDIEEKI
                     KRDLIANPPQIFKENNASKPYHLPQIGYDIKLDENSTQN"
     gene            complement(424..933)
                     /gene="lolA"
                     /locus_tag="ACHFOB_001427"
     CDS             complement(424..933)
                     /gene="lolA"
                     /locus_tag="ACHFOB_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LolA-like outer membrane lipoprotein chaperone"
                     /protein_id="HFN5800208.1"
                     /translation="MKKTFLIFFIFIGQLFALELNFNTFSSNFTQIVKSKNSTLSYSG
                     HFILSKDQAYWSYDTPSKKEIYINKNQVTIVEHDLEQVIFSHLDNIPNLNEIFKKASL
                     IDKDKLVAKYDNINYTIKLNQEQIQSISYKDEFENDVIINLNNQIKNPKINSDVFKAK
                     IPQNYDIVR"
     gene            1033..3621
                     /gene="secA"
                     /locus_tag="ACHFOB_001428"
     CDS             1033..3621
                     /gene="secA"
                     /locus_tag="ACHFOB_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006605 - protein targeting [Evidence IEA];
                     GO_process: GO:0006886 - intracellular protein transport
                     [Evidence IEA];
                     GO_process: GO:0017038 - protein import [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HFN5800209.1"
                     /translation="MFLNTLKAVFGTKNDREVKKYFKRVTQINALEGKYQNLSDDELK
                     AEFAKFKEQILSGEKNENDILNDVFAIVRETGKRTLNMRHFDVQLIGGMVLHDGKIAE
                     MKTGEGKTLVATLPVVLNAMSGKGVHVVTVNDYLAKRDAEQMSAIYNFLGFSVGVILS
                     SQNSDIEHKQAYDCDITYGTNNEFGFDYLRDNMKFSKVEKVQREHNFVIVDEVDSILI
                     DEARTPLIISGPTNRTLDGYIKANEVAKQMQKGEAVLPPAKPEGDFVVDEKNRNILIT
                     EAGIAKAEKLFGVENLYSLDNAILAHQLDQALKAHNLFEKDVHYVLRNNEVIIVDEFT
                     GRLSEGRRFSEGLHQALEAKENVKIQEESQTLADITFQNYFRMYNKLAGMTGTAQTEA
                     TEFSQIYSLDVISIPTNIPIKRQDKDDLIYKTQNEKFKAVIEEIKKANAKGQPVLVGT
                     ASIERSEVFHNMLVKEKIPHHVLNAKNHEQEALIIQDAGKKGAVTIATNMAGRGVDIK
                     IDDEIRALGGLYIIGTERHESRRIDNQLRGRAGRQGDPGISRFYLSLEDNLLRIFGGD
                     RIKSIMDRLGIEEGESIESRIVTRAVENAQKKVESLHFESRKHLLEYDDVANEQRKTI
                     YRYRNELLDENYDVRAKISQNIAEYSANVMNDYILDESGSNVNFENLKAKILYECSTQ
                     ISEKDFENLSVIEMQDKLSQILENSYNEKMSRLEIKELRNIERILYLQVLDNAWREHL
                     YQMDILKTGIGLRGYNQKDPLVEYKKESYNLFLELVNRIKFDSIKLLFSVQFNQEEVQ
                     NLENKANEENEKLLQSSVEMGASEDNLGEAEFKKVPRNAPCPCGSGKKFKECHGKSGP
                     KQGILA"
     gene            3618..4823
                     /locus_tag="ACHFOB_001429"
     CDS             3618..4823
                     /locus_tag="ACHFOB_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5800210.1"
                     /translation="MNKSVLKYLLFKYLRFDKEQPFINLSMLLTFLGVCVGLCVLLVA
                     MAIMNGFDKEFEKRFFVMNYPITILPKFYAPVNDEFIDELRKTFPNLLFSPYISTQVV
                     VKGDNRFEGGVLFGVNFNDEKKINEVVAKALKDENLSGFDILVGSALIDEFGLHKNDK
                     LSLIFSNLNPSGFSLVPQTKRFDVKARFTSGLAFYDKAYMYTDVDALKKVLGMPKNPN
                     YDGVHVYSDNAFKDVEKIKSYLKDDYAVVGWWEQNKNFFSALELEKRALFIVLMLIIL
                     VASLNIVSSLLMIVMNRRSEIALLLALGTSKNEVKKSFFALGMLIGGGGMIVGVVLAF
                     FALWLLGNFDIVTLPADVYGTSKLPLDLSLMDFSLTIVGALIIIALSSFYPAKKATQI
                     NILDTLRNE"
     gene            4846..5631
                     /locus_tag="ACHFOB_001430"
     CDS             4846..5631
                     /locus_tag="ACHFOB_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HFN5800211.1"
                     /translation="MSLFTQKNKDFKPLKPLSKSKIITNLILLILFLILFCYCSFSIS
                     AYHFDFSAIATYKEKFLQGFLNTLIISFFSLLLSIILGGVFCAFSLSSIVFLRFLSTF
                     YIELIRGTPLLVQVLLMYYIIANNLGLDNRYVAGVIILSCFSAAYLAEIFRAGILSIS
                     ISQLESARALGLKEMQVFAYVIFPQALKNILAPLSGQFANLIKDSSLLSVIAVNELTQ
                     SAQEINSYTFATLEAYVILAITYLILTLPISIFSRYLERKCQK"
     gene            5693..5768
                     /locus_tag="ACHFOB_001431"
     tRNA            5693..5768
                     /locus_tag="ACHFOB_001431"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5726..5728,aa:Lys,seq:ttt)
BASE COUNT         2010 a          709 c         1072 g         1982 t
ORIGIN      
        1 tatcatatct ttaagcggag tggaaaaatt tgatttagag gagtttaaac gctttttaga
       61 aagcactgag gctaaagaga aaggtatggg tagtgaggta aaaaaagcac ttgaaaactt
      121 agaagttcct aaaactcaag ttcctagtgt tgaaaagatc acagctccta gtgttccaaa
      181 tttagaagcc aaacaagttg aacagctttt caaagattca gatgaagaaa ataaaaatga
      241 caatggagaa atcaatatag ataatttaaa tacacctaaa atgactccag atatagaaga
      301 aaaaattaaa agagatttaa tcgccaatcc tccacaaata ttcaaagaaa ataatgcaag
      361 caagccttat catttgccac aaataggcta tgatataaag cttgatgaaa attcaacgca
      421 aaattagcga actatatcat aattttgcgg aatttttgcc ttaaaaacat cggaattaat
      481 ttttggattt ttaatttgat tgtttagatt gattataaca tcattttcaa attcatcttt
      541 atatgatatg ctttgaattt gctcttgatt gagtttaatt gtataattta tattatcata
      601 ttttgctaca agtttatctt tgtctataag acttgctttt ttgaaaattt cattaagatt
      661 tggaatgtta tcaagatgag agaaaatgac ttgttctaga tcgtgctcta ctatggttac
      721 ttgatttttg ttaatataaa tctctttttt actaggagta tcataactcc aatatgcttg
      781 atctttactc agtataaaat gtccagaata agaaagtgta gagtttttgg atttcactat
      841 ttgggtaaaa ttgcttgaaa aggtattaaa attaagttca agggcaaaaa gttgtcctat
      901 aaaaataaaa aatatcaaga atgttttttt catttatttt ccttaaaaaa ttatattttt
      961 tatatcattc tagctaattt taattaaata atcgttataa tgatagtttg aaaaatttat
     1021 aaaggtttaa aaatgttttt aaatacctta aaagccgttt ttggaacaaa aaatgatcgt
     1081 gaagttaaaa aatacttcaa gcgtgtaaca caaatcaatg ctttagaagg caaatatcaa
     1141 aatttaagcg atgatgaatt aaaagccgaa tttgcaaaat ttaaagagca aattttaagc
     1201 ggagaaaaaa atgaaaatga tatcttaaat gatgtttttg ctatagttag agagacaggt
     1261 aagagaactt taaatatgcg tcattttgat gtacagttaa tcggtggtat ggttttgcac
     1321 gacggaaaaa tcgcagaaat gaaaacaggg gagggtaaaa ctcttgtagc gactttgcct
     1381 gtagttttaa atgccatgag cggaaaaggc gtacatgttg ttacggtaaa tgattattta
     1441 gctaaaagag acgctgagca aatgagtgcg atttataact ttttaggttt tagtgtaggc
     1501 gtgattcttt cttctcaaaa cagtgacata gagcacaagc aagcttatga ttgcgatatt
     1561 acttatggaa ccaataatga gtttggtttt gattatttgc gtgataatat gaaattttca
     1621 aaagttgaaa aagttcaaag agagcataat tttgttattg tagacgaggt agatagtatt
     1681 ttaattgatg aggcaagaac tccgcttatc atcagcggtc ctacaaatcg cactttagat
     1741 ggttatatta aagccaatga agtagctaag caaatgcaaa aaggcgaagc agttttaccc
     1801 cctgcaaaac ctgagggtga ttttgtagta gatgagaaaa atcgtaatat tttaatcacg
     1861 gaagcaggta ttgctaaggc tgaaaaactt tttggtgtag aaaatttata cagtcttgat
     1921 aatgctatct tagcacatca gcttgatcaa gctttaaagg cgcataatct ttttgaaaaa
     1981 gatgtgcatt atgttttaag aaataatgaa gttatcatcg ttgatgaatt tacagggcgt
     2041 ttaagtgaag gacgtcgttt tagcgaagga ttgcatcaag ctttagaagc caaagaaaat
     2101 gtaaaaattc aagaagaaag ccaaactcta gcagatatta cttttcaaaa ttattttaga
     2161 atgtacaata aacttgcagg tatgacagga actgcgcaaa cagaagcgac tgaattttct
     2221 caaatttata gtttagatgt tatttctata ccgacaaata ttcctattaa aagacaagat
     2281 aaagatgatc ttatctataa aactcaaaat gaaaaattta aagctgtaat tgaagagatc
     2341 aaaaaagcca acgccaaagg tcagcctgtt cttgtgggaa ctgcaagtat agaacgcagt
     2401 gaagtttttc acaatatgct tgtaaaagaa aaaatccctc atcatgtttt aaatgctaaa
     2461 aaccacgagc aagaagcttt gattatccaa gatgcaggta aaaaaggtgc tgtaactatc
     2521 gctacaaata tggcaggtcg tggtgtggat ataaaaatcg atgatgagat tagggctttg
     2581 ggtgggcttt atatcatcgg tacagaaaga catgaaagcc gccgtattga taatcaactt
     2641 cgtggtcgtg caggaaggca gggcgatcct ggaataagtc gtttttatct aagtttagaa
     2701 gataatcttt taagaatttt tggcggggat cgtatcaaaa gcattatgga tcgtctaggc
     2761 atagaagagg gcgaaagcat agagtcaaga atcgttacaa gagcggttga aaatgcacag
     2821 aaaaaagtag aaagcttaca ttttgaaagc agaaagcatt tgttagaata tgatgatgta
     2881 gcaaatgaac aaagaaaaac tatttatcgt tatcgcaatg agcttttaga tgaaaattat
     2941 gatgttagag ctaaaatttc tcaaaatatc gctgaatata gtgcaaatgt aatgaatgat
     3001 tatatacttg atgaaagcgg ttctaatgta aattttgaaa atttgaaagc aaaaatttta
     3061 tatgaatgtt caactcagat tagtgaaaaa gattttgaga atttaagcgt cattgaaatg
     3121 caagataagc taagtcaaat tcttgaaaat tcttataacg aaaagatgtc aagacttgag
     3181 attaaagaat tgcgtaatat agagcgtatt ttatatttgc aagttttgga taatgcttgg
     3241 agagagcatt tgtatcaaat ggatatttta aaaacaggaa tagggcttcg tggatacaat
     3301 caaaaagatc ctcttgtgga atataaaaaa gaaagttata atcttttctt ggagttggtt
     3361 aatcgtatta aatttgatag cattaaacta ctttttagcg tgcaatttaa tcaagaagag
     3421 gtacaaaatt tagaaaataa agccaatgaa gaaaatgaaa agctgcttca aagctcagta
     3481 gaaatgggcg caagcgaaga taatcttggc gaagctgagt ttaaaaaagt tccacgcaat
     3541 gctccttgtc cttgcggaag tggaaaaaaa tttaaagaat gccatggaaa aagtggtcct
     3601 aagcaaggaa ttttagcttg aataaaagcg ttttaaaata tttacttttt aaatatttaa
     3661 gatttgataa agagcaaccc tttatcaatc tttctatgct tttgaccttt ttaggagttt
     3721 gtgtaggact ttgcgttttg cttgtagcta tggcaattat gaatggtttt gataaagaat
     3781 ttgaaaaacg cttttttgtg atgaattatc ctattactat tttgcctaaa ttttacgctc
     3841 ctgtaaatga tgaatttata gatgagttaa gaaaaacatt tccaaatttg ttatttagcc
     3901 cttatataag cactcaagtt gttgtaaagg gagataatcg ttttgaaggt ggtgtgcttt
     3961 ttggcgttaa ttttaatgat gaaaaaaaaa taaacgaagt ggttgctaaa gctttaaagg
     4021 atgagaattt aagtggtttt gatatacttg taggatcagc acttattgat gaatttggtt
     4081 tgcataaaaa tgacaaactt tcacttattt tttcaaatct taatcctagt ggattttctt
     4141 tagtaccgca aactaaacgt tttgatgtta aagcgcgttt tacttcaggg cttgcatttt
     4201 atgataaagc ttatatgtat acagatgttg atgcattgaa aaaagtactt ggaatgccta
     4261 aaaatccaaa ttatgatgga gttcatgtat atagtgataa tgcttttaag gatgttgaaa
     4321 aaattaaatc ttatttaaaa gacgattatg ctgtagtagg ttggtgggaa caaaataaaa
     4381 atttcttttc agccttagag cttgagaaaa gagcgctttt tatagtgttg atgcttatta
     4441 ttttggttgc aagtttaaat atagtaagtt ctttattgat gatagtaatg aatcgtcgca
     4501 gtgaaatagc acttttactt gctctaggta caagcaaaaa tgaggtaaaa aagagttttt
     4561 ttgccttagg tatgcttatt ggtggcggtg gtatgatagt gggtgtggtg cttgcatttt
     4621 ttgctttatg gcttttggga aattttgata ttgtaacttt acctgctgat gtttatggaa
     4681 ccagtaaatt accacttgat ttgtctttaa tggatttttc tttaaccatt gtgggtgctt
     4741 taataatcat agctttatca tctttttatc ctgcaaaaaa agcaactcaa attaatattt
     4801 tagatacttt aagaaatgaa taaattgtaa ttttggagat ttttattgtc tttgtttact
     4861 caaaaaaata aggattttaa acctttaaaa cctctatcaa agtcaaaaat aatcactaat
     4921 ttaattcttt tgattttatt tttaatattg ttttgttatt gtagttttag tataagtgct
     4981 tatcattttg attttagtgc aattgcgacc tataaagaaa aatttcttca aggtttttta
     5041 aatactttaa taatcagttt tttttcttta ttactgagta taattttggg tggagttttt
     5101 tgtgcttttt ctttaagttc aattgttttt ttaagatttt tatctacatt ttacatagag
     5161 cttatcagag gaaccccttt actagtgcag gtattattga tgtattatat cattgcaaat
     5221 aatttaggac ttgataatcg atatgtggct ggagttatta ttttatcatg tttttctgct
     5281 gcttacttag ctgaaatatt tagagctgga attttaagta tttctatatc tcagcttgag
     5341 agcgctaggg ctttagggtt aaaagagatg caggtttttg cgtatgtaat ttttccccaa
     5401 gctttaaaaa atattttagc accgctgagt ggacaatttg caaatttaat taaagatagt
     5461 tccttattaa gtgttattgc tgtaaatgaa ttaacccaaa gtgcgcaaga gataaattct
     5521 tatacttttg ctactcttga agcttatgta attttggcta ttacatatct tattttgact
     5581 ttacctataa gtatattttc tcgttatttg gagagaaaat gccaaaaatg atttaaaaaa
     5641 gcttgacaaa tagagctaat tttggcataa tcacattttt atttcagaaa atgtctcgtt
     5701 agctcagccg gtagagcatc tcccttttaa ggagggggcc gttggttcga atccaacacg
     5761 ggacaccatt ata
//
LOCUS       DAZBIH010000092         5742 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.093, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000092 DAZBIH010000000
VERSION     DAZBIH010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5742)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5742)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5742
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.093"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            20..715
                     /locus_tag="ACHFOB_001432"
     CDS             20..715
                     /locus_tag="ACHFOB_001432"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HFN5800212.1"
                     /translation="MTQEELDALMNGDVDLDSETEAEVKTEESNTEEDALMLEDVKIA
                     DYKPNPSVVWPPPPPNQEHKVVHQLDDVTKDSELKATEMMDKLESINNFFADSESLLK
                     EINKAIEKNIDIFSKLNEKFPNVESFSEVLELNNQAKKSSKEIVGNLQSGQDEVMMAM
                     DAMQYQDIHRQKIERVINVMRALSRYMSSLFEGKIDDKKRVSSAVHIEGDSTADVVSN
                     DDIEALIASLGQK"
     gene            712..1965
                     /locus_tag="ACHFOB_001433"
     CDS             712..1965
                     /locus_tag="ACHFOB_001433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase U32 family protein"
                     /protein_id="HFN5800213.1"
                     /translation="MIIPEIVAPAGNFTKLKIALAYGADAVYAGVNNFSLRSRTAREF
                     NYESFEEAIKYTHERGKKIYVTLNGFHLSFQIEGLKRHILKLREMKPDAFIVASVGAM
                     RLVKELAPEISLHVSTQANILNYLDAQVYKDMGAKRVVIARELGLKDAKALKENCDIE
                     LEAFVHGSMCFAYSGRCLISSVQSGRMSNRGSCANDCRFNYELYAKNPENGTLFRLEE
                     DENGTHVFNSKDLNLCSYIEKIMQENCISAFKIEGRTKSEYYVALTTRTYKMAIQDAL
                     EGKFESSKYEKEIATLKNRGFTDGYLVSRPLEKTDTQNHNTSIEEGSHQVHAISEDGS
                     FFKCKGKIVLNTPYEILAPLGDVIQTCDNELGKIYQKEDKYFIEFKKLIAKNNKEFSE
                     IHSGNEHEIQLPNKISALSFLRKEI"
     gene            1966..2460
                     /gene="purE"
                     /locus_tag="ACHFOB_001434"
     CDS             1966..2460
                     /gene="purE"
                     /locus_tag="ACHFOB_001434"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009320 - phosphoribosylaminoimidazole
                     carboxylase complex [Evidence IEA];
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HFN5800214.1"
                     /translation="MNFVSILMGSKSDYETMKEAVKTLESFGVKYELIISSAHRSPKR
                     TKEYIANAEEKGAKVFIAAAGMAAHLAGAVAAYTTKPVLGVPMSGSNLASMDSLFSTV
                     QMPSGIPVGTLAIGKAGAINAAYLAMQILAIYDVDLAQKLKEDRLEKEKKLVSDSKEV
                     EVLL"
     gene            2470..3006
                     /locus_tag="ACHFOB_001435"
     CDS             2470..3006
                     /locus_tag="ACHFOB_001435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3972 domain-containing protein"
                     /protein_id="HFN5800215.1"
                     /translation="MQTYLELEEFCKLVHLNEDVVKGMMANGALNFKEEEGKIYIEAH
                     QGTFSVVPSSAKSQTAMVNSMTLAGESFVEKTIGTILNLHEKVLDAKDETLEALKNEN
                     KFLKDALYSMQELYDEDRKTIETLNNELKHAREEIEFLKRKYKLMWSKTAEIFGAKTE
                     PDLEMNKNLEKPIENMEQ"
     gene            3018..3881
                     /gene="glyQ"
                     /locus_tag="ACHFOB_001436"
     CDS             3018..3881
                     /gene="glyQ"
                     /locus_tag="ACHFOB_001436"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HFN5800216.1"
                     /translation="MTFSQMILNLQNYWQEQGCAIMQPYDMPAGAGTFHPATFLRSLG
                     KKPWAAAYVAPSRRPTDGRYGENPNRLGAYYQFQVLIKPSPDNIQELYLKSLENLGFD
                     LKSHDIRFVEDNWESPSLGAWGLGWEVWLDGMEVTQFTYFQQVGGIAVDLVSAEITYG
                     LERIAMYLQNVDNVYDIVWSEFNGEKIKYADVHKQSEYEFSKYNFEVSDVKILNEQFE
                     NSYKECKNILEQGLALPAYDYCMLAAHTFNLLDARGAISVAQRQDYMLKIRELSKNCA
                     EIYKKNLNEAE"
     gene            3868..4593
                     /locus_tag="ACHFOB_001437"
     CDS             3868..4593
                     /locus_tag="ACHFOB_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0051540 - metal cluster binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HFN5800217.1"
                     /translation="MKLSEIYNFLDQLSPFDIQESWDNSGILLGDRDSEISTVYLSLD
                     IDENIIKEASENSLIITHHPLIFKGLKDLYDKTYPRAFIKEMICKNISLISMHTNYDL
                     SHLNIYFTEEILGFKISFKDEFLIYVENSISFEALCDWVKKKLNLQILRVSNCGKKDI
                     KRIAICTGSGGDLISKVDADCFLSGDFKYHQALEALSNQISLIDLGHFESERYFSQCL
                     AKDLKNLPLQVIITVSKNPFQYF"
     gene            4603..5319
                     /locus_tag="ACHFOB_001438"
     CDS             4603..5319
                     /locus_tag="ACHFOB_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HFN5800218.1"
                     /translation="MNKYLEQLVLLSKIDQEIDSYEPKIDSINRTLKDAELKIGKINT
                     DLEKIDEEIKDIENQKVQNNAHISEFSAKIKELSKKSGAVKTEKEANALKIEEDIAKE
                     QLDAANDEIVRLDKILENKETYKKELEEEKIKQEQNINEIRVSIKSEMEVLEKDRMSV
                     YDKKTKLVGEMNQKVLSFYEKIRKWAKNTAVVPVKKQACYGCFMKIYDKTYLSVVKGE
                     EIVTCPHCGRILYKEQEEQN"
     gene            5316..>5742
                     /locus_tag="ACHFOB_001439"
     CDS             5316..>5742
                     /locus_tag="ACHFOB_001439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase N-terminal domain-containing
                     protein"
                     /protein_id="HFN5800219.1"
                     /translation="MIFFYYFLTWAAFLFCAVFILLLSFLKSKYKTSLKSRFFLYKNL
                     HQEKADVHFHACSYGEVRSIKTLVLKFDSRITTITQTGFEYAKEFCKKVNYLAFENFL
                     PFWFKPCKVLVIFEAEYWLMLVFMAHIYKTKIILLNARIS"
BASE COUNT         2131 a          664 c         1099 g         1848 t
ORIGIN      
        1 atttaaaaaa gggaaaaaaa tgactcaaga agagcttgat gctttgatga atggtgatgt
       61 tgatcttgat tcagagacag aagcagaggt aaaaaccgaa gaatcgaata ccgaagaaga
      121 tgctttgatg ttagaagatg tcaaaatagc cgattacaaa cctaatccta gtgtagtatg
      181 gccaccaccc ccaccaaatc aggagcataa agttgtacat cagttagatg atgttacaaa
      241 agatagcgag cttaaagcaa cggaaatgat ggataagctt gaaagtatta ataatttttt
      301 tgcggattct gaaagtttac tcaaagaaat aaataaagca atagaaaaaa atattgatat
      361 tttttctaaa cttaatgaaa aatttcctaa tgtggaaagt ttcagtgaag ttttagaatt
      421 aaacaatcaa gctaaaaaaa gttctaagga gattgtcgga aatcttcaaa gcggacaaga
      481 tgaagtgatg atggcaatgg atgcaatgca gtatcaagat atacatcgtc aaaaaatcga
      541 acgtgttatt aatgtaatgc gtgctttaag ccgttatatg agttctttat ttgaaggtaa
      601 aattgatgat aaaaaacgtg taagttctgc agtgcatatt gaaggtgata gtactgctga
      661 tgttgtaagt aatgatgata tagaagcttt aattgcaagt ttagggcaaa aatgatcatt
      721 cctgaaatag tagctcctgc aggaaatttc acaaaattaa aaattgcttt agcttatggt
      781 gcagatgcgg tttatgcagg tgtgaataat ttttctttaa gatcacgcac tgcaagagaa
      841 tttaattatg aaagttttga agaagctatc aaatatactc atgagcgtgg taagaaaatt
      901 tatgttactt taaatggttt tcatttgagt tttcaaattg aaggtttaaa aagacatatt
      961 ttaaaattgc gtgagatgaa acctgatgct tttatcgtag cttctgttgg cgctatgcgt
     1021 cttgttaaag agcttgcacc tgaaatttct ttacatgttt ctactcaggc aaatatttta
     1081 aattatttag atgctcaagt ttataaggat atgggtgcta aaagggttgt aattgcgaga
     1141 gaattaggac ttaaagatgc taaagcttta aaagaaaatt gcgatattga acttgaagct
     1201 tttgtgcatg gttctatgtg ttttgcttat tcagggcgtt gtttaataag ctctgtgcaa
     1261 agtggaagaa tgagcaatcg tggatcttgt gcaaatgatt gcagatttaa ttatgagctt
     1321 tatgctaaaa atccagaaaa tggtacttta tttcgtttag aagaagatga aaatggtact
     1381 catgtgttta attctaagga tttaaatctt tgttcttata tagaaaaaat catgcaagaa
     1441 aattgtatca gtgcttttaa aatagaaggg cgtactaaaa gcgaatatta tgttgcgctt
     1501 acaacaagga cttataaaat ggccatacaa gatgctttag agggtaaatt tgagtcaagt
     1561 aagtatgaaa aagagattgc tacacttaaa aatcgtggtt ttacagatgg ctatcttgtt
     1621 tcgcgtcctt tggaaaaaac cgacacgcaa aatcataata caagcataga agaaggttct
     1681 catcaagtgc atgctataag cgaagatgga agctttttta aatgtaaagg gaaaatcgtt
     1741 ttaaacacgc cttatgaaat tttagcccct ttaggcgatg tgattcaaac ttgcgataat
     1801 gaactaggta aaatttatca aaaagaggat aaatatttta tagagtttaa aaaactcatt
     1861 gctaaaaaca ataaagaatt tagcgaaatt catagtggca atgaacatga aatccaatta
     1921 ccaaataaaa tcagtgcatt aagtttttta agaaaggaaa tatagatgaa ttttgtttct
     1981 attttaatgg gaagcaagag tgattatgag actatgaaag aggctgttaa aactttagaa
     2041 agttttgggg taaagtatga acttatcatc tcatcagctc atcgtagtcc aaaaagaaca
     2101 aaagagtata ttgcaaatgc tgaagaaaaa ggtgcgaaag tttttatagc agcagctgga
     2161 atggcagcgc atttagctgg agctgttgca gcttatacaa caaaacctgt tttgggagtg
     2221 cctatgtcag gaagcaatct tgcaagtatg gattctttat tttctacggt gcaaatgcct
     2281 agtggaattc ctgtaggaac tttagctatt ggtaaggctg gagcgatcaa tgctgcttat
     2341 ttggctatgc aaattttagc tatttatgat gttgatttag cacaaaagct taaagaagat
     2401 cgtcttgaaa aagaaaaaaa acttgtatct gattcaaaag aagtagaagt tttattataa
     2461 gggataaaaa tgcaaaccta tcttgaactt gaagaatttt gtaaacttgt gcatttaaat
     2521 gaagatgtgg ttaagggtat gatggccaat ggggctttaa attttaaaga agaagagggt
     2581 aaaatttaca tcgaagctca tcaaggtact tttagtgtag tacctagttc tgcaaaatct
     2641 caaactgcaa tggtaaattc aatgacttta gcaggagaaa gttttgttga aaaaacaata
     2701 ggaactattt taaatttgca tgaaaaagtt ttagatgcta aagatgaaac acttgaagca
     2761 ttaaaaaatg agaataaatt tttaaaagac gctctttatt ctatgcaaga actttatgat
     2821 gaagatagaa aaactataga aaccttaaac aatgagctaa aacatgcgcg tgaagagata
     2881 gaatttctca agcgtaaata taaattaatg tggagtaaaa ccgcagaaat ttttggagct
     2941 aagacagagc ctgatttgga aatgaataaa aatttagaaa aacctattga aaatatggag
     3001 caataaagag agatacaatg actttttcac aaatgatact taatttacaa aattattggc
     3061 aagagcaagg ttgtgcgatt atgcaacctt atgatatgcc agcaggtgca ggaacctttc
     3121 atccagcaac ttttttaaga agtttaggaa aaaaaccttg ggcagctgct tatgtggctc
     3181 caagtagaag gcctactgat ggacgttatg gtgaaaatcc taatcgctta ggtgcttatt
     3241 atcaatttca agttttgatt aaacctagtc ctgataatat ccaagaatta tatcttaaaa
     3301 gtcttgaaaa tttgggtttt gatttaaaaa gtcatgatat tcgttttgtt gaagataatt
     3361 gggagagtcc aagtttgggt gcttggggtt taggctggga agtatggctt gatggtatgg
     3421 aagtcactca atttacttat tttcagcaag ttggcggtat agcagtagat ttagtaagtg
     3481 ctgaaattac ttatggtctt gaaagaatag ccatgtatct tcaaaatgtt gataatgttt
     3541 atgatatagt ttggagtgaa tttaatggag aaaaaattaa atacgcagat gtgcataagc
     3601 aaagtgaata tgaatttagt aaatacaatt ttgaagtaag tgatgttaag atcttaaatg
     3661 agcagtttga aaattcttac aaagaatgta aaaatatttt agaacaagga ctagctttac
     3721 ctgcttatga ttattgtatg cttgctgcac atacttttaa tcttttagat gcaagaggag
     3781 caatttctgt agcacaaaga caagattata tgttaaaaat tcgtgaactt tcaaaaaatt
     3841 gtgctgaaat ttataagaaa aatttaaatg aagctgagtg aaatttataa ttttttagat
     3901 caattaagtc cctttgatat ccaagaatca tgggataata gtggaatttt gcttggagat
     3961 agggatagtg aaatttcaac tgtttattta agcttagata ttgatgaaaa tatcattaaa
     4021 gaagcgagtg aaaattcttt aattatcaca caccatcctt tgatatttaa aggtttaaaa
     4081 gatttatatg acaagactta tcctagagct tttattaaag aaatgatttg taaaaatatt
     4141 tctttaatca gcatgcatac aaattacgat ttaagtcatt taaatattta ttttacggaa
     4201 gaaattttag gttttaaaat ttcttttaaa gacgaatttt taatttatgt agaaaattct
     4261 atatcttttg aagctttgtg tgactgggtg aaaaaaaagt taaatttaca aattttacgt
     4321 gtaagcaatt gtggtaaaaa agacattaag cgtattgcta tatgtactgg aagtggcggg
     4381 gatttaattt ctaaagtaga tgcggattgt tttttaagcg gagattttaa atatcatcaa
     4441 gctttagagg cgcttagtaa tcaaatcagt cttattgatt tgggtcattt tgaaagtgag
     4501 agatattttt ctcaatgttt agcaaaagac ttgaaaaatt tgccgctaca agttataata
     4561 acagtttcaa aaaatccatt tcaatatttt taaggaaaat aaatgaataa atatctcgaa
     4621 caattagtgc ttttatcaaa aatagatcaa gaaattgata gttatgaacc aaaaatagac
     4681 agtattaata ggactttaaa agatgctgag ttaaaaatag gaaaaatcaa cacagattta
     4741 gaaaaaatcg atgaagaaat caaagatata gaaaatcaaa aagtacaaaa taatgctcat
     4801 atttctgagt tttcggcaaa aattaaagag ctttctaaaa aaagtggtgc agtaaaaaca
     4861 gaaaaagaag ctaatgcttt aaaaattgaa gaagatattg caaaagagca attagacgct
     4921 gcaaatgatg aaattgtaag actggataaa attttagaga ataaagaaac ttataaaaaa
     4981 gaacttgaag aagaaaaaat taaacaagag caaaatatta atgagattag agtaagcatt
     5041 aaatctgaaa tggaagttct tgaaaaagat agaatgagtg tttatgataa aaaaaccaaa
     5101 cttgtgggcg agatgaatca aaaagtttta agtttttatg aaaaaattcg caaatgggcg
     5161 aaaaatactg ctgtagttcc tgttaaaaaa caagcatgct atggatgttt tatgaaaatt
     5221 tacgataaga cttatctgtc tgttgtaaaa ggtgaagaga ttgtaacttg ccctcattgt
     5281 ggaagaattc tttataaaga gcaagaagaa caaaattgat ctttttttat tattttttaa
     5341 cttgggcggc atttttattt tgtgccgtct ttattctttt gctttctttt ttaaaatcca
     5401 aatacaaaac tagtttaaaa tcccgatttt ttctttataa aaatttacat caagaaaaag
     5461 ctgatgtaca ttttcatgct tgttcttacg gggaggtaag aagtattaaa actttggttt
     5521 tgaaatttga ttcaagaata actactatta ctcaaacagg ttttgaatat gcaaaagaat
     5581 tttgtaaaaa ggtaaattat cttgcttttg aaaatttttt gcctttttgg tttaagcctt
     5641 gtaaggtttt ggtaattttt gaagcagaat attggcttat gcttgttttc atggcacaca
     5701 tttataaaac taagattatt ttgcttaatg caagaatatc tg
//
LOCUS       DAZBIH010000093         5659 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.094, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000093 DAZBIH010000000
VERSION     DAZBIH010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5659)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5659)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5659
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.094"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            866..1093
                     /locus_tag="ACHFOB_001440"
     CDS             866..1093
                     /locus_tag="ACHFOB_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002881942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003729 - mRNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicA family
                     toxin"
                     /protein_id="HFN5800220.1"
                     /translation="MSKKDKIIKDLKNNPNNVRFETLKILLESEGYECFNKGGSHYQF
                     RKEECDLIAIPFKRPIKAIYVKMVLKAITGE"
     gene            1097..1456
                     /locus_tag="ACHFOB_001441"
     CDS             1097..1456
                     /locus_tag="ACHFOB_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002779573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HFN5800221.1"
                     /translation="MKDLDYYLNLPYEIIIKKLDEKDGGGYFARYKDFPYIMGDGENE
                     IEALKDLKEAFKGALEVMLEKGDYIKEPIDNEAKIRINITLPKSLVEAIDTISDNRSK
                     FLADLANSAIKSYKIST"
     gene            complement(1788..1919)
                     /locus_tag="ACHFOB_001442"
     CDS             complement(1788..1919)
                     /locus_tag="ACHFOB_001442"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800222.1"
                     /translation="MFKDKIESKIAQFTEKAIKNNDNIKTNAIKAITTDLTVVNTPK"
     gene            complement(1924..2808)
                     /locus_tag="ACHFOB_001443"
     CDS             complement(1924..2808)
                     /locus_tag="ACHFOB_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011812748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800223.1"
                     /translation="MEKGDEAFKKAFANNIGQEIQNRTDLTSEEKAEIALAASAHAGF
                     SVLGNGAEIQSSASSKRGIGNVETFSEAQKAAYNEIMERASLKTLSTTKGMSSWSNTL
                     SGGDSTAYSKMVGYAQSYTQTEQGIQSVSTNNIDNTLNVVARDLAAGDNKDFSNLNTA
                     QQNEYFAKADNYVSDMVKNDPAQLAQYNSQYGAQSIVSPNNTTMPHAAGMNFKTIDGS
                     ERSVLTQSNLNQDQVNQSSKRTSNTTTMPDSQEVKSGATHSQIAQDNKKEVMLLGKLL
                     KIGILLEKILLLFKQKAL"
     gene            complement(3083..4662)
                     /locus_tag="ACHFOB_001444"
                     /pseudo
     CDS             complement(3083..4662)
                     /locus_tag="ACHFOB_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002807409.1"
                     /note="frameshifted; internal stop; incomplete; partial in
                     the middle of a contig; missing C-terminus; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraG N-terminal
                     domain-containing protein"
     gene            complement(4931..5422)
                     /gene="traN"
                     /locus_tag="ACHFOB_001445"
     CDS             complement(4931..5422)
                     /gene="traN"
                     /locus_tag="ACHFOB_001445"
                     /inference="COORDINATES: protein motif:HMM:NF018666.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="conjugal transfer protein TraN"
                     /protein_id="HFN5800224.1"
                     /translation="MFNGQDNRCKNWDMFGGGCCDKDNVFLGLVACKEDEKKLAKLND
                     AGKCHEVGTYCSKKVSLGFTKICVEKKKSFCCFNSKLGRIFNEQGCPQLGKGWGSEEG
                     PQCKGFTPEEFQKLDFSEIDLSEFIADIVGSFDTGKIQADSVKIQEKIQNNIENATKK
                     PTN"
BASE COUNT         1979 a          909 c          831 g         1940 t
ORIGIN      
        1 aaaaagacat aataaaaaag ataaaaacta tttttataag aagttttttg tatttgatta
       61 taaagatatc caaaaataag aaaattaaca agagactaaa agtattaagg tacattgatt
      121 tgcggaaagg aaattctatc acacaaataa tcaataagat gataaaacat ttattcaaaa
      181 atactataat taaagcatat taggcatggc tactctttcg gttgcaagaa agagacatga
      241 tgagtaagat cattgaattt ttagttcttg tcttagaatt aattaatgag ataatcaagc
      301 tcatttgata taaccattga aaaattttat aaaaaccacg cttagtctaa gcttaataca
      361 tttatactaa aaaacattta accgaaagag acgtggcttt cggttatgag aaattcatag
      421 caaaaatact tttacaaaaa aaatagaaaa gattggcaaa aaattagaaa agcaaaaaac
      481 aagattcgct ataataaaaa atccgccttg agttttcact cttggcggaa atttagcaat
      541 caaggctaac tatgaaacga catagtaagc gttttgtgag attatatcta aactttaggt
      601 tttttaagtt taaaatggaa gtatttttaa caaaaccgca ggacagaaaa gccccttgcc
      661 tttgttagta catgaaacta caaattctta ttcatttttc caagtcaaat aaaaaagaaa
      721 tccgtttcaa aacgcagctc aataatctca gtcttaatac tttcaattaa acatacaaag
      781 acaacaagat taaaagaatt gcgatcggtt tataagtgat acttaataaa aagtgtgtat
      841 aatacatact cataaggata ttatagtgag taaaaaagat aaaattatta aagatttaaa
      901 aaataatcct aacaatgtgc gctttgaaac gcttaagatt ttattagaaa gcgaaggtta
      961 tgaatgtttt aataaaggcg gatcacatta tcaattcaga aaagaagaat gtgatcttat
     1021 tgctattcca tttaaacgcc ctataaaggc catatatgtc aaaatggttt taaaagctat
     1081 aacaggagaa tgaattatga aagacttaga ttactatctt aatctacctt atgaaattat
     1141 tataaaaaaa cttgatgaaa aagatggcgg aggatatttt gcaagatata aagatttccc
     1201 ttatattatg ggagatggtg aaaatgaaat agaagcctta aaagatctca aagaagcatt
     1261 taaaggagca ttagaagtta tgcttgaaaa aggtgattat attaaagaac ctattgataa
     1321 tgaagcaaaa attagaatta atattacctt gcctaaaagc ttagtagaag caatagatac
     1381 aataagcgat aatagaagca aattcttagc cgatcttgca aatagtgcta taaagtctta
     1441 taaaattagc acttaaaaat tgacatagtt aaataaaaaa agaaatccgt ttcaaaccac
     1501 taaaaaatag gcattttata gcaaaaatac tttcaaaatt gattaaaata tggtataatt
     1561 ttattaaaaa tatgaataag ttattaatca aggagtaata ttatgctttc cacatactta
     1621 gttgttagct ttttaatatt tattgtgttg tttttttcaa ttttaagttt ttatatggtt
     1681 tttctaaaaa acagaaatac agaaaaaagg gaaactaaaa taattaataa aattttattt
     1741 ctcttatgtt ttctcttgct aatttcaatt tcgattttaa ttggagttta tttaggagta
     1801 ttaacaactg ttaaatctgt cgtaattgct tttattgcat tagtttttat attatcgttg
     1861 ttttttatag ctttttctgt aaattgtgct attttagatt ctattttatc tttaaacaaa
     1921 aggctataaa gccttttgtt taaatagaag gagtatcttt tccaatagga ttccaatttt
     1981 tagaagtttc cctaatagca ttacctcctt tttattatct tgagctattt gtgagtgagt
     2041 tgctccgctt ttaacttctt gactatctgg cattgttgta gtgttgcttg ttcttttact
     2101 actttgattt acttgatctt gatttaaatt agattgagtt aaaacacttc tttctgatcc
     2161 atcaatggtt ttaaaattca tacctgcagc gtgtggcata gtagtgttat ttggactaac
     2221 aatgctttga gcgccatatt gactattata ttgtgcaagt tgtgcaggat cattcttaac
     2281 catatcggat acataattat ctgcttttgc aaagtattca ttttgttgag ctgtattaag
     2341 attgctaaag tctttattat ctccagcagc aagatctctt gcaaccacat taagtgtatt
     2401 gtcaatatta ttagtactaa cagattgaat accttgttct gtttgggtat agctttgagc
     2461 atatccaacc atttttgaat aagctgtaga atcgccacct gaaagcgtat tactccaaga
     2521 agacatacct tttgtggtag atagagtttt aagagaagct ctttccatta tttcattata
     2581 tgcagctttt tgagcttctg aaaaagtttc aacatttcct atacctcttt ttgaacttgc
     2641 acttgattga atttcagcac catttccaag aacgctaaaa cctgcatgag cagaagctgc
     2701 taatgcaatt tccgcctttt cttcgctagt taaatcagtt ctattttgaa tctcttgtcc
     2761 aatattattt gcaaaagcct tcttaaatgc ttcatctcct ttctccataa atcctttagc
     2821 ttcatttaaa tgcacttgct ctaccgcttt gactcatatg tgaatattga tcattaaagt
     2881 ttttattcca agcatcagaa tttgcttgag atacgctatt aacagttgtc atagttcctg
     2941 cgctaagttt ggcgcctgac atcataccat caacatttgt tcctgtcata tttgcattag
     3001 aggtttcaga attctttgta ttatcaccca taactgattg agtattaaat ttagtaacca
     3061 caccatctat atttcttgca tattgaagcg atgctacccc tgcacccaca gcccaaactt
     3121 catctcctct aggagcagca atgctagttt gtgtagataa ggcttgctga tttgcaaagc
     3181 ttccagcagt tcttgaagca cctgttagag cttgagataa tccagaagca aaactcacaa
     3241 atccttgttc gcttgcttta gctatggcat aagctaaaac aggagtactc attacaaggt
     3301 aattcatgaa atttgatcta tttgctactt ctttaaagat aagcatgtta tctcctaagc
     3361 ttaaagctgc ttttcccctg ttattacttg cgcaacattc ataagattaa aatcatttat
     3421 aaaattaata atacaaagta taggagtcca aagcactatc caaatacata gagtaaaaaa
     3481 catcttaata tgtgcgtaag agccaaacac aatagaaagc aaagcaacaa gtcaagacaa
     3541 acctatgatg atagctgtta aataagcttt agctaaaggc aaataagttt gtgccaagtg
     3601 tccttgtgct tgcatacttg cgtaaaattg ctgatccgca taagcagtat ttgcagccac
     3661 agaagcagga tttaaaccta ctgatttagc ggtattaatg attgcatctt gagaagcaag
     3721 cattatcatg gattgttgca aataagatct agcactcaca gcttgtttgt tatagatttg
     3781 tgcagcgcct aagaactttt gctcataatt tgccatatca ttcgccatac caagcaaagc
     3841 agtatgaatt tttatagctt catctgtatc tttttgaatc atttcaacga tttgaggact
     3901 tgcatcagaa caaggcacaa cactttgttc ttcaatatta ttgttatttt taaacaaagg
     3961 agtgagctga aagccattgc ctatgtttgt gaaaagatct tgcattaaat tatcagagtt
     4021 ttgaaaaaga tttctacctt gttgattaag caagatacct actgaaacgc agtttctaaa
     4081 gtaaaaatca atattttttt gtaaagttgc atcaatagcc gaaagcttta cgcttggtaa
     4141 agtactcatc acttgaagtg aaaaacctaa acctgcgtta gaaaaatttg tagattgtgg
     4201 agttgaaaaa tgtttttcca tagcttctag gataaccttc tcaaattgtg ttattaatgc
     4261 aaagcttttt cctatgccta tagaaatttg agaaatgaca taatctttac tagtgacttc
     4321 atcgtgaatc ataaagcggt gattattgtc atttggtgtt tttaaaaaca tgacccacac
     4381 tacagcaaaa agtacaaaca tttttccaaa ttcaaacaca gggtttgttt gtccatccat
     4441 tgctttttta atactaaaaa gtaataatga aatagctaag gccgcattaa cgatataact
     4501 tgtttcagtg gttattcctt taaccgcttg catgatttca ttcatcacat cgccgtaacc
     4561 ccaagtataa attagatttc cattagctat ttcagttgca ccaaataaaa atgaaggtgt
     4621 aaaaaacaaa gtgctaagga ataacaagta aaatcttttc atggactgtt ttaagaagtt
     4681 aaagagtttg tttttggtat aattataaaa ggtagatgcc aaaggcggct acctttggca
     4741 ttaatcataa cctagaaagg cggtgattaa attgctaaac attgttctta taattatact
     4801 cttaatgctt tgctatgtca aggcttattg agtatcccct gcttttgcag ggtttagaac
     4861 aatccctttg gcttacacca aacaaacttt taactaagct tctctccttt ctaataattt
     4921 attttctttt ttaatttgta ggttttttcg ttgcattctc gatattgttt tgaatctttt
     4981 cttgtatttt cacagaatca gcttgtattt ttcctgtgtc aaaacttcct acaatatcag
     5041 caatgaactc acttaaatca atttcactaa aatctaattt ttgaaattct tcaggagtga
     5101 agcctttgca ttgcggaccc tcctcactac cccacccttt tccaagctga gggcatcctt
     5161 gttcattgaa aattcttcct aatttagaat tgaagcaaca aaaacttttc tttttttcaa
     5221 cgcaaatttt agtaaaacct aaactaacct ttttagaaca ataagttcct acttcatgac
     5281 attttcctgc atcgtttaat ttagcaagct ttttctcatc ttctttacaa gctacaagtc
     5341 ctaaaaatac attatcctta tcacaacatc caccaccaaa catatcccaa tttttacaac
     5401 gattatcctg accattgaat atttatagat actgaactat ttgaaacctt attattaaaa
     5461 aatacaaaat cagtgcaaat gtgaaaaaac cgctatataa ccttaaagaa attgaaaaaa
     5521 ataatttcaa attcaaatga tgcacagtga aaataagaaa agcaataaga taaactttca
     5581 aaataaatct gtcttattgc gtgaatatta aaaataaaaa taactaaagt agatgatctc
     5641 cgcctaaata agtttaaaa
//
LOCUS       DAZBIH010000094         5641 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.095, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000094 DAZBIH010000000
VERSION     DAZBIH010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5641)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5641)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5641
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.095"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..2901
                     /locus_tag="ACHFOB_001446"
     CDS             <1..2901
                     /locus_tag="ACHFOB_001446"
                     /EC_number="3.1.21.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0009035 - type I site-specific
                     deoxyribonuclease activity [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I restriction endonuclease subunit R"
                     /protein_id="HFN5800225.1"
                     /translation="EKDLENFIESYLLENHAYIKRTNENYDKNLCLDVELFENFLQAT
                     QSVALEELKKRCGQNYKKELFDRIFSQIKAKGIVKALQGYVEIKGIKIYLAFAKPNTN
                     ANEESVKKYEQNTLSIIRQLYYSTQNKNSLDIVIFLNGLPLITIELKNHFTGQNVFHA
                     IKQYKKDRNPKEAIFNYTIVHFALDHDLCYMSTKLDQDATTFLPFNLGLNNGSGKIGL
                     ANGAGNPPSDGIKTAYLWEKIFKKDTLLNLFFNFVQVVKKKNEEIIIFPRYHQFDVVE
                     KLLAHAKENGTGQRYLIQHSAGSGKSNSISWLAHNLVSLHRLEKNIFDSIIVVTDRKV
                     LDSQIRENVKSFSQTKNLVEAITHGSKQLKNALEEGKKIIITTIQKFPFILDEIKTLK
                     SKTFAIIIDEAHSSQSGSNAQKMAEAIRDKSGDESQNLDDEILEIIKNKKLQSNASYF
                     AFTATPKPKTLEMFGMPCDVNGEQRFIPFHLYSMKQAIEEGFILDVLKGYTTYKSYYK
                     IISCTNDNPKYDKKRANTKLKAYVQNNIKTIEQKSQIMCEHFFQNSFKKINGKAKAMI
                     VTSSRENAVKYYLVFREYLRKNYPHFKAIVAFSGEVNLEGEIYSESGLNGFAENVLKD
                     EFKKDEYRFLIVAEKYQTGFDEPLLHTMYVDKALSGVSAVQTLSRLNRTCKNKENTFV
                     LDFVNTHEDIAKSFSVFYEQTYLSEATDDNRIFDLKANLNEYEIYTQEEIDDFANAIL
                     RKEKENIIHAKLDIMLDRFNQKSDDEKLDFYNKAKTYLKEYSFLAQILPYEDIELEKL
                     YILLKKLASKIILPKSEDLAKGILDNVDFDSYRLQLDKTQDIVLQGNGELKPSFADGS
                     SKSVEAELEELSNIIKDFNNKYANIDFNESDKIAKILYDIKDDIAKNERIRETFSKSD
                     IQNSRIEFDALLKDKIQDILELNLELFKQFNQNIEFKDKIANTMFNMVCNDF"
     gene            2928..3959
                     /locus_tag="ACHFOB_001447"
     CDS             2928..3959
                     /locus_tag="ACHFOB_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002886554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HFN5800226.1"
                     /translation="MFVSVDFFKTFDISNSERLKAKKVQGKKYEIFLNENEQSLITPK
                     VSFKEILRYYYLYPKNAIPSFKLPFFKPDLSDFNTPHITWLGHSSLFISFKEYKILID
                     PVFNTHASPISFINKAFKNAPVYNINDFNEIFAVIITHSHFDHLDAKSIKALKEKARF
                     FITPLKVGNYLKSYGVSEKKIIELDWWSGVEFDDLKIIATPAQHSSSRGDGKNKTLWA
                     SFVMEFLSVDKRVFFSADGGYFTHFKKIGEYFGSFDLACLESGQFNIAWPYSHSFPEQ
                     ILKEAKDLNAKAVMPIHWGRFLAGTHAWNEVVKFLYENLDLPLITPKMGEAYEIGAKF
                     KQDFWWKEG"
     gene            4029..4370
                     /locus_tag="ACHFOB_001448"
     CDS             4029..4370
                     /locus_tag="ACHFOB_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HFN5800227.1"
                     /translation="MKIIQWSRAEFSPKEVKINVLIDNEKGKEIQILLAKDSVMKEHK
                     APFAIHIQVLSGKIWFEVEKEKFELNALDMISLEANVAHSLGGLENSIIRLSLNKSDS
                     IQRVNAVLKKP"
     gene            complement(4420..5589)
                     /locus_tag="ACHFOB_001449"
     CDS             complement(4420..5589)
                     /locus_tag="ACHFOB_001449"
                     /EC_number="2.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HFN5800228.1"
                     /translation="MLTKRSQVLEESITLAITALANELKAKGEDIISFSAGEPDFDTP
                     QIIKNAAINAIEKGCGKYTAVAGIPEVLKAIQTKFKKDNNLDYETSEIITNVGAKHSL
                     FECIECLVEKDDEVIIPSPYWVSYPEMVKFAGGKPVFIEGLEENGFKITAEQLKKAIT
                     AKTKVLMLNSPSNPVGSIYSKEELTQIAKVLEGTQITVLSDEMYEKLRYDGFDFVAFA
                     SVSEDALKRTVTINGLSKCGAMPGWRFGYMASKNKALISAVKRLQGQSTSNICSITQH
                     AAIPALNGECDKDIEKMRQAFEKRRNLALDILKQIPNTSVYKPEGAFYLFVNIQKIEK
                     DSMKFCQKLLEQEKVAVVPGIGFGMDGYFRLSYATSDELIKKGLERIANFIKNYK"
BASE COUNT         2065 a          798 c          948 g         1830 t
ORIGIN      
        1 gaaaaagatt tagaaaattt catagaatca tatttgttag aaaaccatgc ctatatcaaa
       61 agaacaaatg aaaattacga taaaaattta tgtttagatg tagaactttt tgagaatttc
      121 ttacaagcta cgcaaagtgt agcacttgaa gagcttaaaa agcgttgtgg gcaaaactat
      181 aaaaaagaac tttttgatcg tattttctca cagatcaaag ctaaaggcat agtcaaagcc
      241 ttgcaaggct atgtggagat caaaggcatc aaaatttacc tagcctttgc taagccaaat
      301 accaatgcaa acgaagaaag cgtgaaaaaa tacgagcaaa acaccctttc tatcatacgc
      361 cagctttact atagcacgca aaataaaaac tcccttgata tagtgatctt tttaaatggc
      421 ttgcctctta tcaccataga gcttaaaaac catttcaccg gacaaaatgt ctttcacgcc
      481 ataaagcagt ataaaaaaga cagaaaccca aaagaagcta tatttaacta tacgatagtg
      541 cattttgcgc tagatcatga tctttgttac atgagtacga aattagatca agatgcgact
      601 acatttttac cttttaacct tggtttaaac aatggtagtg gcaaaatagg cctagcaaat
      661 ggagcaggta atccgccaag tgatggtata aaaacagctt atttgtggga gaaaatcttt
      721 aaaaaagata ctttgctaaa tttatttttt aattttgtgc aagttgtaaa aaagaaaaat
      781 gaagaaatca tcatatttcc tagataccat caattcgatg tagtagaaaa gctactcgcc
      841 catgcaaaag aaaacggcac agggcaacgc tacttgatcc agcatagtgc aggaagtggc
      901 aagagtaatt ctatatcttg gcttgcacat aatctcgtaa gcttgcatag acttgaaaaa
      961 aatatctttg attctatcat cgtagtaacc gatagaaaag tgcttgatag tcaaataaga
     1021 gaaaatgtaa aatccttttc gcagacaaaa aatttagtag aagctatcac tcatggaagc
     1081 aaacagctta aaaatgcttt agaagaaggt aagaaaatca tcatcacaac catacaaaaa
     1141 tttcctttta ttttagatga aatcaaaact ttaaaaagca aaacttttgc tatcattatc
     1201 gatgaagctc attcaagtca aagcggaagt aatgctcaaa aaatggcaga agccataagg
     1261 gataaaagcg gcgatgaaag tcaaaattta gatgatgaaa ttttagaaat cataaaaaat
     1321 aaaaaactcc aaagtaatgc ttcttatttt gcatttaccg ctacgcctaa gccaaaaacc
     1381 ttagaaatgt ttggtatgcc ttgtgatgtt aatggagaac aaaggtttat cccttttcat
     1441 ctttactcga tgaaacaagc catagaagaa ggatttatac ttgatgtact aaaaggttat
     1501 acaacctata aaagttatta taaaatcata tcttgtacaa atgataatcc aaaatacgat
     1561 aaaaaaagag caaacacaaa actaaaagcc tatgtccaaa acaatatcaa aacaatcgaa
     1621 caaaaatcac aaatcatgtg tgagcatttt ttccaaaata gctttaaaaa gataaatggt
     1681 aaagcaaaag ctatgattgt aacaagctca agagaaaatg ctgtaaagta ttatcttgtt
     1741 tttagggaat atttaagaaa aaattatcca cattttaaag ccattgtagc tttttcaggt
     1801 gaagtaaatt tagaaggtga aatttatagc gaaagtggtt taaatggttt tgcggaaaat
     1861 gttttaaaag atgagtttaa aaaagatgag tatcgttttt taatcgttgc ggaaaaatac
     1921 caaaccggat ttgatgagcc attattacat actatgtatg tggataaagc attaagtggg
     1981 gtaagtgcag tacaaactct atcaagacta aaccgaactt gcaaaaacaa agaaaacact
     2041 tttgtgctag attttgtaaa tactcatgaa gatatagcaa aatcttttag tgtgttttat
     2101 gagcaaactt atttaagtga agccacagat gataatagaa tttttgattt aaaggcaaat
     2161 ctaaatgagt atgaaattta tacccaagaa gaaatagatg attttgcaaa tgctatttta
     2221 agaaaagaaa aagaaaatat cattcatgca aaattggaca taatgctaga tagatttaat
     2281 caaaaaagtg atgatgaaaa attagatttt tataataaag caaaaactta tcttaaagag
     2341 tattcttttc ttgcacaaat attgccttat gaagacatag agcttgaaaa actctatata
     2401 ttgcttaaaa aacttgctag taagatcatc ttgcctaaat cagaggattt agctaaagga
     2461 attttagata atgtggattt tgatagttat cgcttacaac ttgataaaac acaagacatc
     2521 gttttacaag gaaatggaga gctaaagcct tcgttcgcag atggttcgag caaaagtgtt
     2581 gaagctgaat tagaagaact ttcaaacatc atcaaagatt ttaataacaa atacgcaaat
     2641 atagacttta atgaaagcga taaaatcgct aaaatcttat acgatataaa agatgatata
     2701 gcaaaaaatg aaagaatacg tgaaactttt agcaaatccg atatacaaaa ttctcgtatc
     2761 gagtttgatg cgcttttaaa agataaaatt caagatatct tggagttaaa tttagaactt
     2821 tttaaacaat ttaatcaaaa tatagaattt aaagacaaga tagcaaatac catgtttaat
     2881 atggtttgta atgattttta aagtataaaa ttgtcaaaaa aggataaatg tttgtgagtg
     2941 tagatttttt taaaaccttt gatatttcaa atagtgaaag attaaaagct aaaaaagtgc
     3001 agggtaaaaa atatgaaatt tttcttaatg aaaatgagca aagtcttata actcctaaag
     3061 tgtcttttaa agaaattttg aggtattatt atctttatcc aaaaaatgcc attccttctt
     3121 ttaaattacc ttttttcaag cctgatttga gtgattttaa tactccgcat attacttggc
     3181 ttggacattc ttcgcttttt ataagtttta aagaatataa aattttgatt gatcctgttt
     3241 ttaacactca tgcttcgccc atttctttta tcaacaaggc ttttaaaaat gctcctgttt
     3301 ataatataaa tgattttaat gaaatttttg ctgtgattat cacgcattcg cattttgatc
     3361 atttagatgc taagagtata aaagctttaa aagaaaaagc acgatttttt atcacacctt
     3421 taaaagtggg aaattatcta aaaagctatg gggtgagtga gaaaaaaatc atagagcttg
     3481 attggtggag tggagtagaa tttgatgatt taaaaatcat tgcaacacct gcacagcaca
     3541 gttcaagtag gggagatggt aaaaacaaaa ccctttgggc ttcttttgtg atggaatttt
     3601 taagtgtaga taagagagtg ttttttagtg cagatggagg atattttaca cattttaaaa
     3661 aaataggtga atattttgga agttttgatc tagcttgtct tgaaagcgga cagtttaata
     3721 tcgcttggcc atattcacat tcttttcctg aacaaatttt aaaagaggca aaggatctta
     3781 atgcaaaagc tgtcatgcct atacattggg ggagattttt agcaggaact catgcgtgga
     3841 atgaggtagt aaaatttctt tatgaaaatt tagatttacc ccttatcaca ccaaaaatgg
     3901 gcgaggctta tgaaataggg gctaaattta aacaggattt ttggtggaaa gaaggataaa
     3961 ttaacacaag tttataattt atattttggt ttttgctata gttttataaa actaaaaaag
     4021 gagattttgt gaaaatcatt caatggagta gggcggaatt tagcccaaaa gaagtgaaaa
     4081 tcaatgtttt aattgacaat gaaaaaggta aagaaattca aattttatta gctaaagata
     4141 gtgtgatgaa agagcataaa gctccttttg ctatacatat tcaagtttta agcggtaaaa
     4201 tttggtttga agtggaaaag gaaaaatttg aattaaatgc tttagatatg ataagcctag
     4261 aggcaaatgt agcgcattct ttaggtggat tagaaaattc tataataaga ttgagtttaa
     4321 ataaatcaga tagtattcaa agagtaaatg ctgtgcttaa aaagccttga ttttataagg
     4381 ttttaatttg cctaaataat tctaggcttt aacctagaat tatttatagt ttttaatgaa
     4441 atttgctatt ctttctaaac cttttttgat aagctcatcg cttgtggcat aagaaagtct
     4501 gaagtatcca tccattccaa aacctatacc tgggacaacg gcaacttttt cttgttcaag
     4561 caatttttgg caaaatttca tagaatcttt ttctattttt tgtatattta caaaaagata
     4621 aaaagcacct tctggtttat aaacactggt atttgggatt tgtttaagta tgtctaaggc
     4681 taagttacgg cgtttttcaa aggcttgacg cattttttct atatctttat cacattctcc
     4741 atttaaagca ggaatggctg catgttgagt gatggagcaa atatttgaag tgctttgtcc
     4801 ttgaagtctt ttaacggctg aaattagggc tttattttta cttgccatat agccaaaacg
     4861 ccatcctggc atagctccac atttgctaag tccgttaatg gtcacagtgc gttttaaagc
     4921 atcttcgctt acacttgcaa aagctacaaa atcaaaacca tcatagcgaa gtttttcata
     4981 catttcatca cttaaaacag tgatttgtgt tccttctaaa acttttgcaa tttgagttaa
     5041 ttcttcttta gaataaattg atcccacagg atttgaagga gaatttaaca tcaaaacctt
     5101 ggttttagct gtgatagctt tttttagttg ttcagcggta attttaaagc cattttcttc
     5161 caagccttct ataaatacag gttttccacc tgcaaatttt accatttcag gatagcttac
     5221 ccagtaagga ctagggataa tgacttcatc atctttttct actaaacatt ctatacattc
     5281 aaaaagagag tgttttgcgc ctacattggt gataatttcg cttgtttcat aatcaagatt
     5341 attatctttt ttaaatttgg tttgaatagc ttttaatact tcaggaattc ccgcaacagc
     5401 agtgtatttt ccacatcctt tttcaatagc atttatagcg gcatttttga tgatttgtgg
     5461 tgtgtcaaaa tcaggttcgc ctgctgaaaa actaatgata tcttcgcctt tagctttaag
     5521 ttcattggca agtgcagtga tggctaaagt gatagattct tctaaaactt gagatctttt
     5581 tgtaagcatt tttcaatcct taatagtttt tgtttaattt tagcagaaaa ttgcattttt
     5641 a
//
LOCUS       DAZBIH010000095         5498 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.096, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000095 DAZBIH010000000
VERSION     DAZBIH010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5498)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5498)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5498
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.096"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            31..2139
                     /gene="chuA"
                     /locus_tag="ACHFOB_001450"
     CDS             31..2139
                     /gene="chuA"
                     /locus_tag="ACHFOB_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009279 - cell outer membrane [Evidence
                     IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFN5800229.1"
                     /translation="MHPNKKAFKLSLFALLLITNLNAQESNKAINLQKVVVSTTGFEQ
                     DADSNLRNVISIEGKDLQNKGYVSLEQALERISGISFVNFGLGRNIDMRGQGNKSNIA
                     VKVMIDGHAINVLDNSHGVTPLDSINLDNVERIEIIPGGGSVLYGSGTRGGVINIITK
                     KQKSDAFAINLKSSAYDHGGLGGNLGINGAKQINENLAFSFDIQSFNLDGYQEGYNEK
                     GYFINTKTYIDINDNSDLTLGYNYFKSKNTSSGYLTKAQAQSNPTQKGKSDNITQINR
                     PEISLDYHYYFDDIWEFNLEAFWQNQKINYLKDEISMKGTTAYQNGSGFEDTLTGISL
                     KNKLNYANNSYFIFGYEFANHDAKRTSIIHYDVNAGRFQMSHTMTTLMDMDKQSHSIF
                     ALDSHEFNDIFSISGGARYEYSLYDTNRNYTSNMIIPGRPNIKTELFSTDDTSHNFAF
                     EITPNFKYSDTGKLYIKYERGFVSPSPAQFVNKDKNLQKYYSANLNPEIFDTFELGID
                     DFWWDFYGFNLTLFYTLSKDEISYLGNPHSTSGSWWKYYNIDQTRRLGVELSLSQNFL
                     DDDLIFRESLTYLDAKISKGVNDGMRIPYVSKIKATAGFEYAWNKNFSNFIDLTYFSR
                     AKDGGAIDENTGKMSKNSWIRDYFLTDIGMKYNYKKLQILAGIRNLFDKRYYTYQDSI
                     NDQYLVGNGRNYYVEFKYAF"
     gene            2114..3100
                     /gene="chuB"
                     /locus_tag="ACHFOB_001451"
     CDS             2114..3100
                     /gene="chuB"
                     /locus_tag="ACHFOB_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FecCD family ABC transporter permease"
                     /protein_id="HFN5800230.1"
                     /translation="MLNLNTHSKILVIIGLLVAYIIASFTALCLGDENLNPKELFSYI
                     FSQDEILRQIIIDGRLPRIIMAILIGMLLASSGAITQNVFSNPIADPYIIGIASAATF
                     GAVLAYLLKLNDYYYGILGFVCSAFFALGVFKISSKASIATLLIIGIAASSFLGAFTS
                     FFTYLIGEDSFKIVAWLMGNIGNASWFRVGILILPLIFCLFYFYAHKNELNILLSGDD
                     EARNLGVNAQKLKINLLIVSSLAVSFAVAFSGLIGFVGLIIPHTIRLLLKNYDNALVI
                     PLCTAFGGLFLLICDTLARTLLAPVQIPIGILTAFFGAPIFLYLALSARRFL"
     gene            3100..3876
                     /gene="chuC"
                     /locus_tag="ACHFOB_001452"
     CDS             3100..3876
                     /gene="chuC"
                     /locus_tag="ACHFOB_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HFN5800231.1"
                     /translation="MLKIHDLSFAYHQKDLLKNIHLELKNQAFIGILGPNGSGKSTLL
                     KLILKNLSPNKGEISLFNTNIKDFSLKEFAKICGFVPQKSELNTPLKVIDVLLMSKYA
                     NLKHAFSSYSKEDILEIKEFAKDLRLENFLERSILSLSGGEFQRMLLARALLKKPKIL
                     FLDEPTSALDLNYAIELLSLCEKLVKEKNIAVVAILHDLNLASMFCDKILFLKEGEIK
                     YFGTSKELFTQEILKEIYDLNCEIIYKNSKPYILALKEKK"
     gene            3873..4679
                     /gene="chuD"
                     /locus_tag="ACHFOB_001453"
     CDS             3873..4679
                     /gene="chuD"
                     /locus_tag="ACHFOB_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN5800232.1"
                     /translation="MKKILIIMSLFLITLNAKERLVVLDPASIETLFMLKAEDQIVGI
                     ATLQHSNIYPKDQTSKLTSVGTFSNPSLEKIVALKPSLVILSSYSLNLEEGLKNFGIK
                     SINLKAERLEDITKNITTLGQITKKEKEAELLKQEFTQNLKKLSDKPLNKSVIYLYSS
                     NPLMAFNDNSLIADILRLIGIKNLSPQSQISRPVISAEYILKQNPDILILGINAKNNL
                     LDTNALLKNTKAVKTGSIYFNKDTHILLRLSPKIIDRIQEFKTKLENNNF"
     gene            complement(4676..5497)
                     /locus_tag="ACHFOB_001454"
     CDS             complement(4676..5497)
                     /locus_tag="ACHFOB_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002937912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SPASM domain-containing protein"
                     /protein_id="HFN5800233.1"
                     /translation="MCGLKCDFCPSRKGIRGVMSEEKFQNLAHEISNKAELFTFHLLG
                     DPLLLPNLENYLKIAKSEAMKLEITTSGFYLNSKNQALLLGYENIHQINISLMSFLSQ
                     SKISLEQYFKPILELCKKHLEQKSLSFINLRLWNLDANFKAPKSNLKIYEFLAKEFEV
                     KIDTNLSKNRLQRHILLHQNKLFKWPNLKDEPLYKKGKCHALKEQIGILSDGSLVPCC
                     LDTKADINLGNVFENNFDKLFKSPRIKMMKKAFEEDKRIEKLCQTCEFFKARLGD"
BASE COUNT         1966 a          811 c          840 g         1881 t
ORIGIN      
        1 tcattattta ttttatttaa ggagtaaaat ttgcacccaa ataaaaaagc ttttaaatta
       61 tctttatttg cattattgct aataactaat ttaaatgcac aagaatcaaa taaagctatc
      121 aatctacaaa aagttgttgt tagtacaaca ggttttgaac aagatgcgga ttcaaattta
      181 cgcaatgtaa tcagcataga aggcaaagat ctacaaaata aaggttatgt ttccttagaa
      241 caagccttag aaagaatttc aggcattagt tttgtaaatt ttggacttgg acgcaatata
      301 gatatgcgtg gacaaggaaa taaatccaat atagctgtaa aagttatgat tgatgggcat
      361 gctattaatg ttcttgataa ttcccatggt gtaaccccac tagatagtat caatttagat
      421 aatgtagaac gcatagaaat catacctggg ggtggatctg tgctttatgg aagtggtact
      481 agaggtggcg tgattaatat cattacaaaa aaacaaaaat cagatgcttt tgctataaat
      541 ttaaaaagca gtgcttatga tcatggtgga ctaggtggaa atttaggtat caatggtgcc
      601 aaacaaataa atgaaaattt agcttttagc tttgatatac aaagttttaa ccttgatgga
      661 tatcaagaag gttataatga aaaaggttat tttatcaaca caaaaaccta tattgatatt
      721 aatgataata gcgatttaac tttgggttat aattatttta aaagcaaaaa taccagcagt
      781 ggctatctaa caaaagcaca agctcaaagc aatccaactc aaaaaggtaa gagtgataat
      841 atcacacaaa tcaatcgccc tgaaatttct ttggattatc attactattt tgatgatata
      901 tgggaattta acctagaagc tttttggcaa aatcaaaaga tcaattatct aaaagatgaa
      961 atttctatga agggaactac agcttatcaa aatggaagtg gctttgaaga cacacttaca
     1021 gggataagtt taaaaaataa gctaaattat gcaaataatt cttattttat ttttggttat
     1081 gaatttgcaa accatgatgc aaaaagaaca agcattattc attatgatgt aaatgccggc
     1141 agatttcaaa tgagtcacac catgacaacg cttatggata tggataaaca aagccattct
     1201 attttcgctc ttgattctca tgaatttaac gatattttta gtatttcagg tggagcaaga
     1261 tatgaatata gtctttatga cacaaataga aattacacta gcaatatgat aatacctgga
     1321 agacctaata ttaaaactga acttttttcg accgatgata caagtcataa cttcgccttt
     1381 gaaatcactc caaattttaa atactcagac acaggaaagc tttatatcaa atacgaaaga
     1441 ggttttgtct ctccaagtcc agcacaattt gtcaataagg ataaaaattt acaaaagtat
     1501 tattctgcaa atttaaatcc tgagatcttt gatacctttg aactaggaat tgatgatttt
     1561 tggtgggatt tttacggctt taatctaact ttattttaca ccctaagcaa agatgaaatt
     1621 tcttatcttg gaaaccctca ttctactagt ggatcttggt ggaaatatta taatatagat
     1681 caaactcgcc gtctaggagt agaattaagt ctgagtcaaa atttcttaga tgatgattta
     1741 atctttagag aaagtctaac ttatcttgat gctaaaattt ctaaaggcgt taatgacggc
     1801 atgagaattc cttatgtttc aaaaatcaaa gccacagctg ggttcgaata cgcttggaat
     1861 aaaaatttct caaattttat tgatttaacc tatttttcta gagcaaaaga tggtggagct
     1921 atagatgaaa atacaggaaa aatgtctaaa aattcttgga taagggatta ttttttaaca
     1981 gatattggta tgaaatataa ttataaaaaa ttacaaattt tagcaggaat tcgcaatctt
     2041 ttcgataaaa gatactacac ctatcaagac agtataaatg atcaatacct agttgggaat
     2101 ggcagaaact actatgttga atttaaatac gcattctaaa attttagtga ttatagggct
     2161 tttggtagct tatataatcg cttcttttac agcactttgt ttaggagatg agaatttaaa
     2221 cccaaaagaa cttttttcat atatctttag ccaagatgaa attttaagac aaatcatcat
     2281 agatggacgc ttgccacgca ttataatggc gattttaatc ggtatgcttc tagctagtag
     2341 tggggctatc actcaaaatg tattttcaaa tcctatagcc gatccttata tcataggtat
     2401 agcttctgcg gcaacctttg gagcggtttt agcgtatttg ttaaaattga atgattatta
     2461 ttatggaatt ttaggttttg tttgctctgc cttttttgcc ctaggagttt ttaaaatttc
     2521 ttctaaagct tctatagcga ctttactcat tatcggcata gcagcttcat cttttttagg
     2581 agcttttact tcttttttca cttatcttat aggcgaggat tcttttaaaa tagtcgcttg
     2641 gctcatggga aatataggca atgcttcttg gtttcgtgtg ggtattttaa tcttgccttt
     2701 aattttttgt ttgttttatt tttacgctca taaaaacgaa ttaaacatac ttttaagcgg
     2761 agatgatgaa gctagaaatc taggggtaaa tgctcaaaaa ttaaagataa atttactcat
     2821 tgtctcatcc ttggctgtat cttttgcggt tgcttttagt ggacttatag gctttgttgg
     2881 actcatcatt cctcatacta taagactttt gcttaaaaac tatgataatg ccttggttat
     2941 ccctttatgt acagcatttg gaggattatt tttacttatt tgtgatactt tagcaagaac
     3001 tcttttagcc cctgtacaaa ttccgattgg aattttaact gcattttttg gagctcctat
     3061 ttttttatat ttggctttaa gcgctaggag atttttataa tgctaaaaat acatgattta
     3121 agctttgctt atcaccaaaa agatttacta aaaaacattc atttagaact taaaaatcag
     3181 gcttttatag gaattttagg gccaaatggc tcaggcaaaa gcactctttt aaaacttata
     3241 cttaaaaatt taagtccaaa taaaggagag ataagtcttt ttaatacaaa tatcaaagat
     3301 ttttctctta aagaatttgc caaaatttgc ggctttgtgc cccaaaaatc agaattaaac
     3361 acccctttaa aagtcatcga tgtgctttta atgagcaaat atgcgaattt aaaacacgct
     3421 tttagttctt attctaaaga agatatttta gaaattaaag aatttgctaa ggatttaaga
     3481 cttgaaaatt ttctagaaag aagcatactt tctttaagtg ggggtgaatt tcaaagaatg
     3541 cttttggcaa gagctttgct taaaaagcca aaaattcttt ttttagatga acccacttca
     3601 gcccttgatt taaactatgc tatagagctt ttaagtcttt gcgaaaaact agttaaagaa
     3661 aaaaatatag ccgttgttgc tatcttgcat gatttaaatt tagcttctat gttctgcgat
     3721 aaaatccttt ttttaaaaga aggggaaata aagtattttg gaacgagcaa agagcttttt
     3781 actcaagaaa ttttaaaaga aatttatgat ttaaactgcg agattattta taaaaattct
     3841 aaaccttata ttttagcttt aaaggagaaa aaatgaaaaa aattttaatt attatgagtt
     3901 tgtttttaat cacactaaat gcaaaagaac gccttgtagt gcttgatcct gcaagcatag
     3961 aaaccctttt tatgcttaag gctgaagatc aaatcgtagg cattgccact ttacaacact
     4021 caaatatcta tcctaaagat caaacctcaa aacttacaag tgtaggcact ttttcaaatc
     4081 cttcacttga aaaaatagta gcattaaaac caagtttggt gattttaagc tcttattctt
     4141 taaatttaga agaaggactt aaaaattttg gtatcaaaag tatcaattta aaagccgagc
     4201 gtttagaaga tataacaaaa aatatcacaa ccttaggcca aatcaccaaa aaagaaaaag
     4261 aagcagagct tttaaaacaa gaatttaccc aaaatttaaa aaaattaagc gataaacccc
     4321 taaataaaag tgtgatttat ctttattcta gcaacccttt aatggccttt aatgacaatt
     4381 ctttaatagc tgatatttta agacttatag ggattaaaaa tttaagtccg caaagtcaaa
     4441 tttcaagacc tgttatatca gcagaatata tactgaaaca aaatccagac atactcattc
     4501 ttggaattaa tgctaaaaac aaccttttag atacaaatgc tttattgaaa aataccaaag
     4561 cagttaaaac aggaagtatt tattttaaca aagatacaca tatattatta cgtcttagtc
     4621 ctaagataat agatagaatt caagaattta aaacaaagct agaaaataac aatttttaat
     4681 cacccaatct tgctttaaaa aattcgcaag tttgacaaag tttttctatg cgtttatctt
     4741 cttcaaaagc ttttttcatc atctttatac gcggtgattt aaaaagctta tcaaagttat
     4801 tttcaaaaac atttcctaag ttaatatctg ctttagtatc caaacagcaa ggcaccaaac
     4861 ttccatcact taaaatccca atttgctctt ttaaagcatg acattttcct tttttataaa
     4921 ggggttcatc ttttaaattt ggccatttaa aaagtttatt ttgatgaagc aaaatatgtc
     4981 tttgcaagcg atttttactt aagtttgtat caatcttaac ttcaaattct ttggctaaaa
     5041 actcataaat ttttaaattt gacttaggtg ctttaaaatt agcatctaaa ttccaaagtc
     5101 ttagattgat aaaagaaagg cttttttgct ctaaatgctt tttgcaaagt tctaaaatag
     5161 gcttaaaata ctgttctaaa gaaattttgc tttgacttaa aaaagacatt aaagaaatat
     5221 tgatttgatg gatattctca taccctaaca ataaagcttg atttttagaa tttaaataaa
     5281 agccacttgt agtgatttca agcttcatag cttcactttt tgcgattttt agataatttt
     5341 ccaaattagg taaaagcaaa ggatcgccca aaagatgaaa ggtaaaaagc tcagccttat
     5401 tagaaatttc atgagctaag ttttgaaatt tttcttcact cattaccccg cgaattcctt
     5461 ttcgagaagg acaaaaatcg cattttaaac cacaaata
//
LOCUS       DAZBIH010000096         5367 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.097, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000096 DAZBIH010000000
VERSION     DAZBIH010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5367
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.097"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..87)
                     /locus_tag="ACHFOB_001455"
     CDS             complement(<1..87)
                     /locus_tag="ACHFOB_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800234.1"
                     /translation="MTYFSLEFSILMIAFFAIYWTFKNDYKIQ"
     gene            complement(130..633)
                     /gene="ctf"
                     /locus_tag="ACHFOB_001456"
     CDS             complement(130..633)
                     /gene="ctf"
                     /locus_tag="ACHFOB_001456"
                     /EC_number="1.16.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme ferritin"
                     /protein_id="HFN5800235.1"
                     /translation="MLSKEVVKLLNEQINKEMYAANLYLSMSSWCYENSLDGAGAFLF
                     AHASEESDHAKKLITYLNETDSHVELQEVKQPEQNFKSLLDVFEKTYEHEQFITKSIN
                     TLVEHMLTHKDYSTFNFLQWYVSEQHEEEALFRGIVDKIKLIGEHGNGLYLADQYIKN
                     IALSRKK"
     gene            813..1808
                     /gene="pstS"
                     /locus_tag="ACHFOB_001457"
     CDS             813..1808
                     /gene="pstS"
                     /locus_tag="ACHFOB_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HFN5800236.1"
                     /translation="MKKILSLSVTSLALCGALNAVDLKIAGSSTVYPFTSFVAEEYAS
                     IKNTKTPIVESLGTGGGFKVFCEGTTDISNASRPMKLSEFETCKKAGVTDIVGMMIGY
                     DGIVLAQNKTNAPLNITKKELFLALAKEIPQNGKLIPNPYTNWNQINKNLPNRKISVY
                     GPPSSSGTRDTIEELVMSDVSKKIPEYKGEYKTIRQDGAYIPSGENDNLIVSKLTIDK
                     DAFGIFGYSFLVSNSDKINAANIDGVTPSEESIADEKYELARSLFIYINAKKNPKEAF
                     DFAKIYMSDDLAKSGGELEKIGLVPLSDDKLKASQKHVEDRKILNDELVKAGKVF"
     gene            1818..2732
                     /gene="pstC"
                     /locus_tag="ACHFOB_001458"
     CDS             1818..2732
                     /gene="pstC"
                     /locus_tag="ACHFOB_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HFN5800237.1"
                     /translation="MLKEKIIKFALFLCAFVSVIVSFAIMLTILIEALKFFQKESVVT
                     FLFSSQWAADAAFMNADGTSKQGVFGALSLFWGTFYISLIAMLTALPLGVMCAIYLGV
                     FAGKKSKNYLKPILEIIAGIPTVVFGFFAAIVVAPFIVWFFSLFGIQASFQSALGAGF
                     IMGIMIVPIVASLSQDCIEAVSEKRINGAYALGMTKKEVVFAVILPEAIPGIVAACLL
                     GLSRALGETMIVVMAASLRPNLTLNFLEDMTTVTVKIVEALSGDQAFDSSLALSAFSL
                     GLVLFVITLIINMFSVYLINRFHKRKNL"
     gene            2729..3817
                     /gene="pstA"
                     /locus_tag="ACHFOB_001459"
     CDS             2729..3817
                     /gene="pstA"
                     /locus_tag="ACHFOB_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012857620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HFN5800238.1"
                     /translation="MKKLFKKRQKASKSFKRLCKMGLYINLIFLCIFLGSVAYLGFPA
                     FKQTYIFVEANRNSPSYDLLSRAEQRKIRTGQIAEKSWLLANSEVDQYMKQKYNRLSE
                     KQRTLVDDLVQKGEIELKFNSNFFLNGDSKSPENSGILSSVIGTLLVMLVCMVVSVPI
                     GVAAAIYLEEFAPQNILTHFIEVCINNLASIPSILFGLLGLGVFINLFGMPRSSALVG
                     GLTLAIMSLPIIIVSTKAALKSVDINMKNAAYALGMTKVQMVKGIMLPLAMPMILTGS
                     ILTLAGAIGETAPLMIIGMIAFIPDVASSIFDPTSVLPAQIYSWSAMPERAFLERTAA
                     GIIVLLGLLVVLNLSAILLRKYFQGKLK"
     gene            3814..4554
                     /gene="pstB"
                     /locus_tag="ACHFOB_001460"
     CDS             3814..4554
                     /gene="pstB"
                     /locus_tag="ACHFOB_001460"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009898 - cytoplasmic side of plasma
                     membrane [Evidence IEA];
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0015415 - ATPase-coupled phosphate ion
                     transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:0006817 - phosphate ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein
                     PstB"
                     /protein_id="HFN5800239.1"
                     /translation="MIAKTTNLNLFYGKKQALFDINMQIEQNKITALIGASGCGKSTF
                     LRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYA
                     PKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIK
                     PKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGE
                     LIEFGESKEFFENPKQEKTKAYLSGAFG"
     gene            4616..5191
                     /locus_tag="ACHFOB_001461"
     CDS             4616..5191
                     /locus_tag="ACHFOB_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800240.1"
                     /translation="MIINQIYSIDSCDDVELNIKRGSKLEFRLTYDDSKEIEAIICII
                     PGGAEDMNSYIYIDDYLTRNYKVAVININYHCIGNRPHLGSSFYLDDIDKFILDTSLK
                     AINLKCINVYGINSYENLNNAFIRIDQEIQKLKLNQQLHQNYKLKTHVSFLPFKNEYQ
                     NFGIMQAMDILNAIFYIKENSPFKLMRGGEY"
     gene            5199..>5367
                     /locus_tag="ACHFOB_001462"
     CDS             5199..>5367
                     /locus_tag="ACHFOB_001462"
                     /inference="COORDINATES: protein motif:HMM:NF022594.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800241.1"
                     /translation="MFGNSYGGYLANLCAKIAPWSIDFILDNSSFVNLFGNIFRLIGF
                     GKEIDFTRYHGT"
BASE COUNT         1826 a          700 c          966 g         1875 t
ORIGIN      
        1 ttgtatttta taatcatttt taaaagtcca ataaatagca aaaaaagcta tcattaaaat
       61 actaaattct agagaaaaat aagtcatacc ttcaatccaa agcgagattt gcccataata
      121 gggcaaagat tatttttttc tacttaatgc aatatttttg atgtattgat cagctaaata
      181 aagtccattt ccgtgttctc cgattaactt aatcttgtca actataccgc ggaaaagtgc
      241 ttcttcttcg tgttgttcgc ttacatacca ttgtaagaaa ttaaaagtag aatagtcttt
      301 atgtgttagc atgtgttcaa ctaaagtatt gattgatttt gtgataaatt gctcatgttc
      361 ataggttttt tcaaaaacat caagtaaaga tttgaaattt tgttcaggct gttttacttc
      421 ttgaagctct acatgagaat ctgtttcatt aagataagtg ataagctttt tagcatgatc
      481 gctttcttcg cttgcatgtg caaacaagaa ggctccagct ccatcaagac tgttttcata
      541 gcaccaagaa ctcatactaa gatataagtt tgctgcatac atttctttgt ttatttgttc
      601 attgagtaat tttacaactt ctttagaaag cattcttatc tccttattaa aatttaaaat
      661 gttttataat gatatattat ttttttaaaa acaagctaaa ttttttgata gttaaaaatt
      721 atatttaaga aaaatacaaa ataaaaaatg tttccaaaat gtttccaagt ttttttaaac
      781 ttccattact tttttaaagt taaggagaaa aaatgaaaaa aattctatct ttaagtgtga
      841 caagtcttgc actttgtggt gctttaaatg cagtagattt aaaaatcgca ggttcatcga
      901 ctgtgtatcc ttttacttct tttgtagctg aagaatatgc ttcgatcaaa aatacaaaaa
      961 ctcctatagt agagagcttg ggaacagggg gtggatttaa ggtattttgt gaaggaacta
     1021 ctgatatttc taatgcttca agacctatga aattaagcga atttgaaact tgcaaaaaag
     1081 caggggtaac tgatatagta gggatgatga taggttatga tggtatagtt ttagctcaaa
     1141 ataaaaccaa tgctccatta aatatcacaa aaaaagaact tttcttagca ttggcaaaag
     1201 aaattccaca aaatggaaaa cttataccaa atccttatac aaactggaat caaatcaata
     1261 aaaatttacc aaatcgtaaa attagtgttt atggtccacc atcaagttca ggaacaagag
     1321 atactataga agagcttgta atgagtgatg tgtctaaaaa aattcctgag tataaaggcg
     1381 agtataaaac catacgccaa gatggtgctt atatcccaag tggtgaaaat gataatctaa
     1441 tcgtttcaaa acttactatt gataaggatg cttttggaat ttttggttat agctttttag
     1501 tgagcaattc agacaaaatc aatgctgcta atatagatgg tgttacgcca agcgaagaaa
     1561 gcatcgcaga tgaaaaatac gaacttgcaa gaagtttgtt tatttatatc aatgctaaga
     1621 aaaatccaaa agaagccttt gattttgcaa aaatttatat gagtgatgat ttggcaaaaa
     1681 gtggtggaga gcttgaaaaa ataggacttg ttcctttgag tgatgataaa ttaaaagctt
     1741 ctcaaaaaca cgtagaagat agaaaaattt taaatgatga gcttgtaaaa gctggaaaag
     1801 ttttttaagg aaaaactttg ttaaaagaaa aaataatcaa atttgcactt tttttatgtg
     1861 cttttgtaag cgtgatagta agttttgcta tcatgcttac aattttaatt gaagctttaa
     1921 aattctttca aaaagaaagc gttgttacct ttttattctc aagtcagtgg gcagctgatg
     1981 cagcttttat gaatgcagat ggcacgagta aacaaggtgt ttttggggcg ctatcgcttt
     2041 tttggggaac tttttatatt tcattgattg ctatgctaac ggctttacct ttaggggtta
     2101 tgtgtgctat atatttaggt gtttttgctg gcaaaaaatc taaaaattac ttaaaaccta
     2161 ttttagaaat cattgcaggg attcctactg ttgtttttgg attttttgcg gctatagttg
     2221 tagcgccttt tatagtgtgg tttttttctt tatttggcat acaagcaagc tttcaaagtg
     2281 ctttaggcgc aggttttatc atggggatca tgatagtacc tatagtggct tcgttatctc
     2341 aagattgcat tgaagcagta agcgagaaaa ggattaatgg cgcttatgct ttaggtatga
     2401 caaaaaaaga agtggttttt gccgtgattt tacctgaggc tattcctggt atagttgcag
     2461 cttgtctttt aggactttca agagccttag gcgaaactat gatagtggtg atggcagctt
     2521 ctttgcgtcc aaatttaact ttaaattttt tagaagatat gacaacggta acggtaaaaa
     2581 tcgtagaagc tttaagtgga gatcaagctt ttgatagttc tttggcttta agtgcttttt
     2641 ctttaggttt ggtgcttttt gtcatcactt taatcatcaa tatgtttagc gtttatctta
     2701 tcaatcgctt tcacaaaagg aaaaatttat gaaaaaactt tttaaaaaaa gacaaaaagc
     2761 ttcaaagtct tttaaaagac tttgtaaaat ggggctttat attaatttaa tttttctttg
     2821 tatcttttta ggaagtgtgg cttatcttgg atttcctgct tttaagcaaa cctatatttt
     2881 tgtagaggct aatagaaatt ctccttctta tgatctttta tctcgcgcag aacaaagaaa
     2941 aataagaaca ggacaaatcg ctgaaaaatc ttggcttttg gcaaattcag aagtagatca
     3001 atatatgaag caaaaatata atcgccttag tgaaaaacaa agaactttag tcgatgatct
     3061 tgtacaaaaa ggcgagatag agcttaaatt taatagcaat ttctttttaa atggggactc
     3121 aaaatctcct gaaaattcag gaattttatc ttcagttata gggactttgc ttgttatgct
     3181 tgtttgtatg gttgtgagtg ttcctatagg cgttgcagcg gcaatttact tagaagaatt
     3241 tgcaccacaa aatatcctta cacattttat agaagtgtgt attaacaacc ttgcaagtat
     3301 tcctagtatc ttgtttggac ttttaggact tggagtgttt atcaatcttt ttggaatgcc
     3361 tcgttcaagt gctttagtgg gtgggcttac tttggcgatc atgagtttgc ctattatcat
     3421 tgtttcaacc aaagcggcct taaaaagtgt ggatatcaat atgaaaaatg ctgcttatgc
     3481 cttaggtatg acaaaggttc aaatggtaaa aggtattatg ttacctttgg ctatgcctat
     3541 gattttaaca ggttctattt tgactttagc aggggctata ggagagactg cacctttgat
     3601 gattatcggt atgatagcat ttatccctga tgtagctagt tcgatttttg atccaactag
     3661 cgttttacct gctcaaattt actcatggtc ggctatgcca gagcgtgcat ttttagaaag
     3721 aacagcagcg ggtattattg tgcttttagg acttttagtt gtgttaaatc ttagtgcaat
     3781 attattaaga aaatattttc aaggaaaatt aaagtgatag caaaaacaac aaatttaaat
     3841 ttattttatg gaaaaaaaca agctttattt gatatcaata tgcaaataga gcaaaacaaa
     3901 attactgcac tcatcggtgc ttcaggatgt ggtaaatcca cttttttgcg ctgttttaat
     3961 agaatgaatg ataaaattgc aaaaatcgat ggtttagtgg aaattgaagg aaaagatgtt
     4021 aaaaatcaag atgtagtagc cttgcgtaaa aatgtaggca tggtttttca acaacctaat
     4081 gtttttgtaa aaagcattta tgaaaacatc tcttatgcac caaaacttca tggtatgatt
     4141 aaaaacaaag atgaagaaga agctttggtg gtggattgct tgcaaaaagt ggggcttttt
     4201 gaagaggtta aagataaatt aaagcaaaat gccctagctc tttcaggcgg acaacaacaa
     4261 cgtctttgta tcgcaagagc tttagcgatc aaacctaaac ttttgctttt agatgagcca
     4321 acttctgcac ttgatcctat aagttcaggc gtgattgaag agcttttgaa agaattaagc
     4381 cataatcttt ctatgatcat ggttacgcat aatatgcaac aaggcaaacg cgtagctgat
     4441 tatacagcat tttttcacct aggtgagctt atagaatttg gagaaagcaa ggaatttttt
     4501 gaaaatccaa agcaagaaaa aaccaaagct tatttaagtg gtgcttttgg ataagattta
     4561 ttttttggaa atttgatgat ataattaatt aaaaatttcc aaaaaaaggt ttaatatgat
     4621 tataaaccaa atttattcta tagattcttg tgatgatgta gaattaaata tcaaaagggg
     4681 aagtaaatta gaatttagat tgacttatga tgatagtaaa gaaatagaag ctataatctg
     4741 cattattcca ggcggtgctg aagatatgaa tagttatatt tatattgatg attatttgac
     4801 tagaaattat aaagtcgctg ttattaatat taactatcat tgtataggaa atagacctca
     4861 tttgggttct agtttttatt tggatgatat agataaattc attttagata ctagtttaaa
     4921 ggctataaat ttaaaatgta taaatgttta tggtataaat tcttatgaaa atctaaataa
     4981 tgcttttata agaatagatc aagaaattca aaaattaaaa ttaaatcaac aattacatca
     5041 aaactataag ttaaaaacac atgtaagttt tttaccattt aaaaatgaat atcaaaattt
     5101 tggtataatg caagctatgg atattttaaa tgctattttt tatataaaag aaaattctcc
     5161 atttaaacta atgagggggg gggagtatta gaacgatttt gtttggaaat tcatatggtg
     5221 gatatctagc aaatttatgt gcaaaaatag ctccttggag tattgatttt atattagata
     5281 attcttcttt tgttaatttg tttggaaata tttttagact tataggtttt ggaaaagaaa
     5341 tcgattttac tagatatcat ggaacat
//
LOCUS       DAZBIH010000097         5319 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.098, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000097 DAZBIH010000000
VERSION     DAZBIH010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.098"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            105..650
                     /locus_tag="ACHFOB_001463"
     CDS             105..650
                     /locus_tag="ACHFOB_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002873064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN5800242.1"
                     /translation="MNKFSIVLTLLLYGSCALALDPNLEKTKSATGIDLPTAKWNLPK
                     ALNEDGTIDETKMPKNSEYSKMVILGNKILNETSKYVGPQAKDPKKRFAGNNLSCSSC
                     HANGGSVQNQSGFVGIWARFPQYNARGDKVITLADRINGCFERSMNGKRMPSDAPEMK
                     AMLTYMQWLSQGVPVGAKIEG"
     gene            672..1091
                     /locus_tag="ACHFOB_001464"
     CDS             672..1091
                     /locus_tag="ACHFOB_001464"
                     /inference="COORDINATES: protein motif:HMM:NF024834.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN5800243.1"
                     /translation="MSRAADPKKGKAIYMDKCAVCHQENGLGLKNEDSAGAYYLYPPL
                     WGDDSYNTGAGMYRLIKAASYIKENMPQGAPDLSLEDAYDVAAYMNSQARPIKANRDK
                     DFPDRKVKPLDMDVGPYDDSFSTTQHRYGPYTNMIKK"
     gene            complement(1125..1766)
                     /gene="dsbA"
                     /locus_tag="ACHFOB_001465"
     CDS             complement(1125..1766)
                     /gene="dsbA"
                     /locus_tag="ACHFOB_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFN5800244.1"
                     /translation="MRKFFCKFVLALVFYSSFALANNSFITLNPSLPNSENSVIEAFS
                     YKCIHCYNHHKFGTLEKLREAFPNLHFKLYPVSLMNGEFSKEMNELFAFAQYKDEQNG
                     KDASYSDSLSHKLADVYFVSYFLNKQRNFSNLDEFYDIGLKAMNVNKNEVLNFLNTQK
                     AKEILSEFQRANDIAKTYGTPAFVVNGKYQINPSAINSMQDLEDLVKKLSNMK"
     gene            complement(1852..3714)
                     /locus_tag="ACHFOB_001466"
     CDS             complement(1852..3714)
                     /locus_tag="ACHFOB_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004315485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aryl-sulfate sulfotransferase"
                     /protein_id="HFN5800245.1"
                     /translation="MRLSKTLCMALLAGSTLLAPNVLMAMGGPSGAKIDWQIQGQIGA
                     IKMNPYGLSPLTAIIMDNGYVLSDIKVTIVPKPNGQTISYNVNSKMAKTYGGIPIFGL
                     YPSYLNTVKVSYTKTANGKSQKVIDEIYKITTPGVSIEPSGSTDQRGTPFENVKVLKM
                     DPKFSDRLYLVNNAPGKQSGKGSQSVWNNPVGGAMEWDENSNVFIIDTKGEIRWYFDN
                     DKLMNWDNIYNRGIMMGFHQNKDGALTWGFGQRYVKYDILGREIFNRKLPAAYIDFSH
                     AMDNMQNGHYLLRVASANTLRPDGKHVRTVRDTIVEVDENGNVVDDWRLYEILDPYRS
                     TIIKALDQGAVCLNIDASKAGKTLSDEELAKMDESDKFGDIAGTGIGRNWAHVNSVDY
                     DPSDDSIIISSRHQSAVVKIGRDKKIKWILGAHKGWNKEFQKYLLQPVDKNGKKIVCD
                     DDYSKCPGYENDNGGFDFTWTQHTGWRIDSKSNKRYIYISVFDNGDARGAEQPAFASQ
                     KYSRAVIYKIDQQNKTVEQIWEYGKNRGNEWFSPVTSLTQYEPDKDSIMVYSATAGMA
                     FDLSKGVSLGEPKPEIDEFNWGAKEPSVQIQFSGSGTGYQAMPFSVDQAFNPKK"
     gene            complement(3802..4611)
                     /gene="dsbI"
                     /locus_tag="ACHFOB_001467"
     CDS             complement(3802..4611)
                     /gene="dsbI"
                     /locus_tag="ACHFOB_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-disulfide oxidoreductase DsbI"
                     /protein_id="HFN5800246.1"
                     /translation="MSCIKMKDNCRNFSLSKWQDTRKPWLILIIVTIGLTCIAHFLFQ
                     EYLFMEPCEQCVYIRFDMLVMAIGGMIALINPTNNIIKIFSYSLAFYGIWLGLEHCLT
                     LNHIHEVVHSENPFAGVDGCREIPIYPFNLPLHEWAPSWFLPIGECGMDTPVVPENAY
                     NHLNAFQKFFIGTPPDFENGLYSNGWYLIPSLKFINMAICCLIAFLCCFIVLFAMFIA
                     YVLDKNKPNAKIFALAIVILVLVLKFIGEPKNPNQNIASLNHLNQVVLRYS"
     gene            complement(4608..5270)
                     /locus_tag="ACHFOB_001468"
     CDS             complement(4608..5270)
                     /locus_tag="ACHFOB_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012661276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiol:disulfide interchange protein DsbA/DsbL"
                     /protein_id="HFN5800247.1"
                     /translation="MKFPVKLARSIVVCAFLAGISASALSEGKEYVILKNPIANADNS
                     LIEIFSYRCTHCYDHHKFNTMGKVKEKLPNLTYKFYPVSSMGDYGKQANEIFAFAAFK
                     DGVNKADPTDKNSLTHKVAEAYFNAYFKKKQRWENGKNPEAFYSVGLKAMNVSKADFE
                     NFLKTPEAAELLKSYEIANPISQNYGTPAFVVNGKYQIVPSAIKSPEALIEITKELSK
                     QK"
BASE COUNT         1831 a          923 c          761 g         1804 t
ORIGIN      
        1 taaggtttaa agcttttttc ttaaaatgta attaggtttt attgactttt tctaaataaa
       61 gtcttatact gaatttaaat tacgcaaaat aaggaggaaa attgatgaat aaattttcta
      121 tagttttaac tttgttgtta tatggaagtt gtgctttagc cttagatcca aatttggaaa
      181 aaaccaagag tgcaacaggt attgacctgc ctactgctaa atggaatttg cctaaggcat
      241 taaatgaaga tggcactata gatgaaacta agatgccaaa aaattcagaa tatagcaaaa
      301 tggttatttt aggaaataaa attcttaatg aaacaagcaa atatgtgggt ccacaggcca
      361 aagatcctaa aaaaagattt gcgggaaata atctttcttg ttcaagctgt catgctaatg
      421 gtggaagtgt gcaaaatcaa tcgggttttg taggaatttg ggcaagattt ccacaatata
      481 atgccagagg agataaagta attaccttag cagataggat caatggctgt tttgaacgct
      541 ctatgaatgg caaaagaatg cctagtgatg cgcctgaaat gaaagccatg ctaacttata
      601 tgcaatggtt atctcaagga gttccagtgg gagctaagat agaagggtag ggacttaaga
      661 aaatagattt catctcaaga gcagctgatc ctaaaaaagg caaggcaatt tatatggata
      721 aatgtgccgt ttgtcatcaa gaaaatggct tagggcttaa aaatgaggat agcgcagggg
      781 cgtattatct ttatccacca ctttggggtg atgatagtta taatacagga gctggaatgt
      841 atcgtcttat caaagctgct tcttatatta aagaaaatat gcctcaaggt gcgcctgact
      901 taagtcttga agatgcttat gatgtagcag cttacatgaa ttcacaagct cgtcctatta
      961 aagcaaatag agataaagac tttccggata gaaaagttaa gcctttagat atggatgtag
     1021 gaccttatga cgatagcttt tctacaaccc aacatcgcta tggaccttat acaaatatga
     1081 tcaaaaaata attttaaggc aatttttatt gccttaaaaa tttattattt catattactt
     1141 aattttttaa ctagatcttc taaatcttgc attgaattga ttgcgcttgg gttaatttga
     1201 tattttccat taacaacaaa agcaggggtg ccataggttt tagctatatc attagctctt
     1261 tgaaactcgc ttaaaatttc tttagctttt tgggtattta aaaaatttaa tacttcattt
     1321 ttatttacat tcatagcctt taaacctatg tcgtaaaatt catctaaatt tgaaaaattt
     1381 ctttgcttat ttaaaaaata agaaacaaaa taaacatcag caagtttatg agataaacta
     1441 tcagaataac tcgcatcttt accattttgc tcatctttgt attgagcaaa ggcaaaaagc
     1501 tcattcattt ctttggaaaa ttccccattc attaaactta caggatagag tttaaaatgt
     1561 aaatttggaa aagcttctct cagtttttca agagttccaa atttatgatg attataacaa
     1621 tgtatacatt tataagaaaa tgcttctatt acactatttt cagagttggg taaacttgga
     1681 ttaagagtaa taaaactatt atttgctaat gcaaaacttg aataaaatac aagagctaaa
     1741 acaaatttgc aaaaaaattt acgcatatta tatccttggt taaataaaat tttcaaagat
     1801 aattttattt aaaaaaaata aataagccca aatttatttt tgggcttatt gttatttttt
     1861 aggattgaat gcttgatcaa cactaaaagg cattgcttga taacccgtgc ctgaaccgct
     1921 aaattgaatt tgaaccgaag gctccttagc accccagtta aattcatcaa tttcaggttt
     1981 tggctctcca agacttacac ctttactaag atcaaaagcc attccagctg ttgcgctata
     2041 aaccataata gaatctttat ctggttcata ttgagttaaa gaagttacag gagaaaacca
     2101 ttcatttcca cgatttttac catattccca aatttgttcc acagttttat tttgctgatc
     2161 aattttataa attacagcac gagaatattt ttgacttgca aacgcaggtt gttcagctcc
     2221 tcttgcatca ccattatcaa aaacacttat ataaatataa cgcttgtttg atttactatc
     2281 aattctccag cctgtatgtt gcgtccaagt gaaatcaaat ccaccattgt cattttcata
     2341 acctgggcat ttgctataat catcatcaca aacaattttt ttgccatttt tatctacagg
     2401 ttgtaataaa tatttttgaa attctttatt ccatccttta tgtgccccta aaatccattt
     2461 tattttttta tcacgaccaa ttttaacaac agcactttga tggcgactag aaataataat
     2521 actatcatca cttggatcat aatcaacgct atttacatga gcccaattcc tacctatacc
     2581 tgtacccgct atatctccaa atttgtcgct ttcatccatt ttggcaagct cttcatcgct
     2641 taaagtttta cccgctttgc ttgcatctat atttaaacac actgcacctt gatccaaagc
     2701 tttgataatg gtacttctat aaggatctaa aatctcatac aatctccaat catcaacaac
     2761 attaccattc tcatctactt ctacaatagt atcacgcact gtgcgtacat gcttaccatc
     2821 tggacgcaaa gtatttgctg aagctactct taataaataa tgcccatttt gcatattgtc
     2881 catagcatga gaaaaatcta tataggcagc aggtaatttg cgattgaaaa tttctcttcc
     2941 taagatatcg tattttacat atctttgacc aaatccccaa gttaaagctc catctttgtt
     3001 ttgatgaaag cccatcataa ttccacgatt gtaaatatta tcccagttca ttagtttatc
     3061 gttatcaaaa taccatctga tttcaccctt ggtatctatg ataaagacat ttgaattttc
     3121 atcccattcc atagcaccac ctacaggatt attccataca gattgtgagc ctttgccaga
     3181 ttgttttcca ggagcattat ttactaaata tagcctatct gaaaattttg gatccatttt
     3241 taatactttc acattttcaa aaggagttcc tctttgatca gtacttccac ttggttctat
     3301 gctaacccct ggagttgtaa ttttataaat ctcatcaatg actttttgac ttttaccatt
     3361 tgcagtttta gtataactta cctttactgt atttaaataa gaaggataaa gtccaaaaat
     3421 aggaattcca ccataagtct tagccatttt agaattcaca ttataagaaa tagtttgacc
     3481 atttggttta ggaacaatgg ttacttttat atcacttaag acataaccat tatccataat
     3541 aatagcggtc aaaggagaca atccataagg attcatttta atcgcaccta tttgtccttg
     3601 aatttgccaa tctattttcg ctccactagg accacccatg gccattaaaa cattaggtgc
     3661 aagtagggta gagcccgcca aaagtgccat acaaagagtt ttgctaagtc tcatgatcaa
     3721 tcctttaaaa ttatttaagc cattctaaga tagcttaata aaattttaat aatacacaac
     3781 aaaaataatt tgttgcgtat tttaagagta tcttaaaacg acttgattta aatgatttaa
     3841 actagctata ttttgatttg gattttttgg ttcgcctata aatttaagca ccaaaaccaa
     3901 aataacaatc gccaatgcaa aaattttagc attaggttta tttttatcta aaacataagc
     3961 tataaacatt gcaaaaagca caataaaaca acataaaaat gctataagac agcaaattgc
     4021 catatttata aactttaaac taggaatcaa ataccaacca ttgctataaa gcccattttc
     4081 aaaatcaggt ggagttccta taaaaaattt ttgaaaagca ttaagatgat tataagcatt
     4141 ttctggaact acaggggtat ccatcccgca ttctcctatt ggcaaaaacc aactaggagc
     4201 ccattcatgc aaaggtaaat taaatggata aataggaatt tcacgacatc catctacacc
     4261 tgcaaaagga ttttcagaat gaaccacttc atgaatatga tttaaagtta gacaatgctc
     4321 caagccaagc caaattccat aaaaagctaa gctataagaa aaaattttta taatattatt
     4381 tgtagggttg attaatgcaa tcataccacc tatagccata acaagcatat caaatcttat
     4441 atacacacat tgttcgcaag gttccataaa aagatattct tgaaataaaa aatgtgctat
     4501 acaagtaagc cctatagtaa ctataatcaa aattaaccaa ggtttgcgcg tatcttgcca
     4561 tttagaaagt gaaaaatttc tgcaattatc tttcattttt atacaactca tttttgcttg
     4621 ctaagttctt tagtaatttc aatcaaagcc tctggagatt tgattgcact tggaacgatt
     4681 tgatattttc cattaacaac aaaagcaggg gtgccataat tttgcgaaat aggattggca
     4741 atttcataac tttttaaaag ctctgcagcc tctggagttt ttaagaaatt ttcaaaatca
     4801 gctttactta cattcattgc ttttaaaccg acactataaa aagcttcagg atttttacca
     4861 ttttcccatc tttgtttttt cttaaaatat gcattaaaat aagcttcagc aactttatga
     4921 gttaagctat ttttatccgt aggatcagct ttatttacac catctttaaa tgctgcaaaa
     4981 gcaaaaattt cattagcttg ctttccataa tctcccatag aacttacagg ataaaattta
     5041 taagttaaat taggtaattt ttctttaact ttacccatgg tattaaattt gtgatgatca
     5101 taacaatgag tacagcgata agaaaaaatt tcaatcaatg aattatcagc gttagcaata
     5161 ggatttttaa gaattacata ttctttacct tcacttaatg cactagcact tatacctgct
     5221 aaaaaagcac atacaacaat agatcttgct aattttactg gaaatttcat taccttctcc
     5281 ttgaaatttg gttttgataa aactttttat taagttttt
//
LOCUS       DAZBIH010000098         5255 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.099, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000098 DAZBIH010000000
VERSION     DAZBIH010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5255)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5255)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5255
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.099"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(19..429)
                     /locus_tag="ACHFOB_001469"
     CDS             complement(19..429)
                     /locus_tag="ACHFOB_001469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HFN5800248.1"
                     /translation="MMDLKEIAQFLDDNAPAFLATLGTCGNPRVRPIQSPLLVRDKIY
                     FCTANTKGLFKHIKNYNGIEFCSCAKDGTFLRLRANAVFEPNLEVKKMMFEKYPYLVN
                     LYETPQNPKFEVFYLDHLSARMQFMNGEFKLFKA"
     gene            complement(436..1179)
                     /gene="fabG"
                     /locus_tag="ACHFOB_001470"
     CDS             complement(436..1179)
                     /gene="fabG"
                     /locus_tag="ACHFOB_001470"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP reductase FabG"
                     /protein_id="HFN5800249.1"
                     /translation="MKFSGKNVLITGASKGIGASIAKTLAGFGLKVWINYRSKPELAD
                     ALKDEIIASGGVAAVIKFDASKEDEFENGVKIIVESDGELSYLVNNAGVTNDKLALRM
                     KLEDFSGVVDTNLSSAFLGCREALKTMSKKRFGAVVNIASIVGEMGNAGQVNYSASKG
                     GMIAMTKSFAKEGASRNLRFNCVTPGFIKSDMTEVLSDEIKQTYQDNIPLKRFAEPEE
                     VANCVAFLLSDYASYVTGDVLKINGGLYM"
     gene            complement(1169..1267)
                     /locus_tag="ACHFOB_001471"
     CDS             complement(1169..1267)
                     /locus_tag="ACHFOB_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-ketoacyl-ACP reductase"
                     /protein_id="HFN5800250.1"
                     /translation="MRLYFSLFAFFIRNLLRLQFLKLNLLRIDNEI"
     gene            complement(1251..2729)
                     /gene="gpmI"
                     /locus_tag="ACHFOB_001472"
     CDS             complement(1251..2729)
                     /gene="gpmI"
                     /locus_tag="ACHFOB_001472"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046537 -
                     2,3-bisphosphoglycerate-independent phosphoglycerate
                     mutase activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HFN5800251.1"
                     /translation="MKQKCVLIITDGIGYNKNSKFNAFEAAKKPSYEKLFKEVPNSLL
                     KTSGLAVGLPEGQMGNSEVGHMCIGSGRIIYQNLVRINKAIENKELEKNENLQKLLAK
                     CKRVHIIGLYSDGGVHSMDTHFKAMLEICAKNGNEVFAHAITDGRDVNPKSGLNFIKD
                     LKEFCENLGVHFATLCGRFYAMDRDKRWDRVKECYECLLGKAYKVPNLLEYLQKSYDE
                     NVTDEFIKAVQNENYKGMREEDGIIFINFRNDRMKQLVEVLNSKDFKEFEREKIFENL
                     LTMSVYDDKFKLPVLFEKEKIENTLAQVISKAGLSQLHTAETEKYAHVTFFFNGGKEE
                     LLENETRVLIPSPKVKTYDEKPQMSAFEVCDAVKKGIEKGEDFIVVNFANGDMVGHTG
                     DFNAAIKAVEAVDTCLGEIVECAKKHDYAFIITSDHGNCEAMQDEKGNLLTNHTTFDV
                     FVFVQAKGVSKIKDNMGLSNIAASVLKILDLEIPKEMNEALF"
     gene            2809..3870
                     /gene="mraY"
                     /locus_tag="ACHFOB_001473"
     CDS             2809..3870
                     /gene="mraY"
                     /locus_tag="ACHFOB_001473"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008963 -
                     phospho-N-acetylmuramoyl-pentapeptide-transferase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HFN5800252.1"
                     /translation="MYYLSDLSHYAFFTYISVRAGFAFFIALCLSLFLMPKFITWAKN
                     KNASQPIYEYAPETHKTKCHTPTMGGLIFISSAVIASLSCIKFDNIFAISALLCLILF
                     CLIGLIDDLGKVLKKDNHSGLSPRMKLLTQIIAGLICILPLYFSSELSTELFIPFYKH
                     PLFDMEIFAIAFWILVLISSSNAVNLTDGLDGLATVPSIFSLSTLGIFLYLSGNLNYS
                     EYLLLPKIQGLGEVVIICAALIGALMGFLWYNCYPAQVFMGDSGSLALGGFIGFLAII
                     SKNEILLLLIGFVFVLETVSVILQVGSFKIFNKRVFKMAPIHHHFEKVGWVENKIIVR
                     FWMIALLSNLLALASIKLR"
     gene            3870..5078
                     /gene="murD"
                     /locus_tag="ACHFOB_001474"
     CDS             3870..5078
                     /gene="murD"
                     /locus_tag="ACHFOB_001474"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008764 -
                     UDP-N-acetylmuramoylalanine-D-glutamate ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HFN5800253.1"
                     /translation="MKISLFGYGKTTRAIAENLVDKFGPFDIYDDHFIETKKDTLGNL
                     LLNPNDFDDNLSDIEIPSPGFPPKHKLIQKAKNLQSEYDFFYDIMPKSVWISGTNGKT
                     TTTQMATHLLSHIGAVMGGNVGTPLAELDPYAKLWILETSSFTLHYTHKAKPEIYALL
                     PISPDHLSWHGSFDNYVQDKLSVLKRMNECDVAILPKIYANTPTKAHKISYEDEKDLA
                     VKFGIDTEKISFKSPFLLDAIMALAIEKILLDTLSYELLNSFVMEKNKLEELKDSQNR
                     LWVNDTKATNESAVMAALNRYKDKKIHLIIGGDDKGVDLSNLFDFMKNFNIELYAIGI
                     STEKMLDYAKKANLKAYKCEVLSKAVNEISNHLRVNEVALLSPACASLDQFNSYAERG
                     KVFKECVNKI"
BASE COUNT         1724 a          957 c          709 g         1865 t
ORIGIN      
        1 aataaaatta tcaaatcatt aagccttaaa aagcttaaat tctccattca taaattgcat
       61 tctagcgctt aaatgatcaa gataaaaaac ttcaaatttt ggattttgcg gagtttcata
      121 aagatttaca agataaggat atttttcaaa catcattttt ttaacttcta aatttggttc
      181 aaaaaccgca ttagccctaa gtcttaaaaa agtcccatct tttgcacaag aacaaaattc
      241 aataccatta taatttttta tatgcttaaa aagtcctttt gtatttgctg tgcaaaaata
      301 aattttatct ctcacaagca atggactttg tataggacgc actctaggat ttccacaagt
      361 tcctaaagtg gctaaaaatg ctggtgcatt gtcatctaaa aattgtgcta tttcttttaa
      421 atccatcatt tttccttaca tatataaacc accattgatc ttaagcacat cgcctgtcac
      481 ataagaggca taatcactaa gtaaaaacgc tacacaatta gccacttctt caggttctgc
      541 aaagcgtttt aaagggatat tgtcttgata ggtttgtttg atttcatcac ttaaaacttc
      601 agtcatatcg ctttttatga aacctggagt tacacagtta aagcgtaaat ttctacttgc
      661 tccttcttta gcaaaagatt tagtcatagc tatcattcca cctttactag cagaataatt
      721 tacttgtcca gcattgccca tttctccgac aatagaagcg atatttacaa cagcaccaaa
      781 gcgtttttta ctcatggttt ttaaagcttc tctacaacct aaaaaagctg agcttaaatt
      841 cgtatccaca acgccactaa aatcttctaa tttcattctt aaagcaagtt tatcatttgt
      901 aacgcctgcg ttatttacaa gataacttaa ctctccatcg ctctccacta tgatttttac
      961 accattttca aactcatctt ctttgcttgc atcaaattta atcacagcag caacgccacc
     1021 acttgcaata atttcatctt ttaaagcatc tgcaagttca ggttttgaac gataattaat
     1081 ccaaacttta agtccaaaac ccgccaaagt ttttgcgata gaagcaccta ttcccttact
     1141 tgctccagta attaaaacat tttttccact aaatttcatt atctatcctt aataagttta
     1201 attttaaaaa ttgcaatctt aacaaatttc ttataaaaaa ggcaaacaaa ctaaaataaa
     1261 gcctcattca tttcttttgg aatttctaag tctaaaattt taagcacgct tgcagcgata
     1321 ttactaagcc ccatattatc tttaatcttt gaaactccct ttgcttgcac aaaaacaaaa
     1381 acatcaaaag tagtgtgatt ggtaagcaaa tttccttttt catcttgcat agcctcgcaa
     1441 tttccatgat cacttgtaat gataaaagca taatcatgct tttttgcaca ttctacaatc
     1501 tcgcccaaac aagtatccac cgcttcaaca gcctttatag cagcattaaa atcacctgta
     1561 tgtccaacca tatctccatt tgcaaaattt accactataa aatcctcacc cttttctatg
     1621 ccttttttca ctgcatcaca cacttcaaaa gcactcattt ggggtttttc atcataagtt
     1681 tttaccttgg ggcttgggat taaaaccctt gtttcatttt ctaaaagctc ttcttttccg
     1741 ccattaaaaa agaaagttac atgggcatat ttttcggttt ctgcggtatg aagctgacta
     1801 agccctgctt tagaaatcac ttgcgctaaa gtattttcaa ttttttcttt ttcaaaaagc
     1861 acagggagtt taaatttatc atcataaaca ctcatagtaa gtaaattttc aaagattttt
     1921 tcgcgttcaa actctttaaa atccttagaa tttaacactt caacaagttg tttcattcta
     1981 tcatttctaa aattgataaa gataatgcca tcttcttctc tcataccctt gtaattctca
     2041 ttttgcactg ctttgataaa ttcatcggta acattttcat cgtaagattt ttgcaggtat
     2101 tctaataaat ttggcacctt ataagcctta cctaacaagc actcataaca ttctttcacc
     2161 ctatcccaac gcttatctct atccatagca taaaaacgcc cacaaagtgt agcaaaatgc
     2221 acacctaggt tttcacaaaa ttcttttaaa tcttttatga aatttaagcc actttttgga
     2281 tttacatcac gcccatcagt gattgcgtga gcaaaaactt cattgccatt tttcgcacaa
     2341 atttcaagca tggctttaaa atgtgtatcc atagaatgca ccccgccatc actataaagc
     2401 cctataatat gcactctttt acattttgct aaaagttttt gtaaattctc atttttttca
     2461 agttctttgt tttcaatggc tttattaata cgcactaaat tttgataaat aatacgccca
     2521 ctgcctatac acatatgccc tacttcacta tttcccatct gcccttctgg caaacctaca
     2581 gctaaaccac tcgtttttag taaagaattt gggacttcct taaaaagctt ttcataactt
     2641 ggttttttag ctgcttcaaa agcattaaac ttactattct tattataccc tattccatct
     2701 gtaataatta aaacgcattt ttgcttcatt tttctctctt ttataagaat ttttttggtt
     2761 agattttact aaaattaaac ttttaaaaac caaaaagaag gctaggtttt gtattatctt
     2821 tcagatttaa gtcattatgc tttttttact tatattagtg tgcgtgcagg ctttgcattt
     2881 tttatcgctt tatgtttgtc tttattttta atgcctaaat ttattacttg ggctaaaaat
     2941 aaaaacgcta gtcaacctat ttacgaatac gccccagaaa ctcataaaac caaatgccat
     3001 actccaacta tgggtggact tattttcatc agttctgcag taattgcaag tttatcttgt
     3061 atcaaatttg ataatatttt tgctataagt gctttgcttt gtttgatact tttttgtttg
     3121 ataggactca tagatgattt gggcaaagtt ctaaaaaaag ataatcactc aggacttagt
     3181 ccaagaatga agcttttaac gcaaatcatc gctggactta tttgcatctt acctttatat
     3241 tttagttcag agcttagcac ggaacttttt ataccttttt ataaacaccc tctttttgat
     3301 atggaaattt ttgccattgc tttttggatt ttggttttaa tttctagctc taatgctgta
     3361 aatttaaccg atggacttga tggcttagct acagttccaa gtattttttc tttatctact
     3421 ttagggatat tcttatattt gagcggaaat ttaaattata gtgaatattt acttttgcca
     3481 aaaattcaag gacttggtga agtggtgatt atttgtgctg cattaatcgg tgctttaatg
     3541 ggatttttat ggtacaactg ttatcctgca caggttttta tgggggatag cggaagttta
     3601 gctttaggtg gatttatagg atttttagct atcattagca aaaatgaaat tttactttta
     3661 ctcataggtt ttgtttttgt tctcgaaact gtttctgtaa ttttacaagt tggaagtttt
     3721 aaaattttta ataaaagagt ttttaaaatg gcacctattc atcatcattt tgaaaaagtt
     3781 ggctgggtag aaaataaaat tatagtacgt ttttggatga tagccctact ttcaaattta
     3841 ctcgcacttg catcaataaa gctaagataa tgaaaatttc actttttgga tacggaaaaa
     3901 ccacacgtgc tattgctgaa aatttggtag ataaatttgg accttttgat atttatgatg
     3961 atcattttat agaaacaaaa aaagatacac taggaaattt acttttaaat cctaatgatt
     4021 ttgatgataa tttaagcgat attgaaattc ctagtccagg ttttccacca aagcacaaac
     4081 tcattcaaaa agcaaaaaat ttacaaagtg aatatgactt tttttacgat atcatgccaa
     4141 aatccgtttg gataagcgga accaatggca aaaccactac cactcaaatg gctacacatt
     4201 tattatcaca cattggtgct gttatgggtg gaaatgttgg aactccttta gcagagcttg
     4261 atccttatgc aaaactttgg atacttgaaa cttcatcttt caccctacac tacactcata
     4321 aagctaaacc tgaaatttat gcacttttac ctataagtcc tgatcatctt tcttggcatg
     4381 gaagttttga taattatgtt caagataagc taagcgtttt aaaaagaatg aatgaatgtg
     4441 atgtagcaat actgcctaaa atttatgcga atactccaac aaaagctcat aaaataagct
     4501 atgaagatga aaaagatcta gctgttaaat ttggcattga tacggaaaaa atttccttta
     4561 aaagtccttt tttactcgat gctatcatgg ctttagctat agaaaaaatt ctacttgata
     4621 ctttaagcta tgagctttta aatagctttg taatggaaaa aaataaactc gaagagctta
     4681 aagacagtca aaataggctt tgggtaaatg acactaaagc tacaaatgaa agtgcggtaa
     4741 tggctgcact taatcgctat aaagataaaa aaatccatct tatcataggg ggagatgata
     4801 agggtgtaga tcttagtaat ttatttgatt ttatgaaaaa ttttaacata gaactctatg
     4861 ctataggtat tagtactgaa aaaatgcttg attatgcaaa aaaagcaaat ttgaaagcct
     4921 ataaatgtga agttttatct aaagctgtaa atgaaatttc aaatcactta agagtcaatg
     4981 aagtggctct tttaagtccc gcttgtgcaa gtttagatca gttcaactct tacgcagagc
     5041 gtggaaaagt ctttaaagaa tgtgtgaata aaatttaatt tattttactt ttcatacaaa
     5101 tatattaaac tttccaaacc cctaaaaaca ccctattctc tctaaaaacc ctaaccagta
     5161 acaaactctt tttttaaaca cgattctaag caccatctaa aacaacaata aaaataaaca
     5221 taggatttat atatataaag taagtaatga agaca
//
LOCUS       DAZBIH010000099         5205 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.100, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000099 DAZBIH010000000
VERSION     DAZBIH010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5205)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5205)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5205
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.100"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            36..530
                     /gene="cetC"
                     /locus_tag="ACHFOB_001475"
     CDS             36..530
                     /gene="cetC"
                     /locus_tag="ACHFOB_001475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy taxis response protein CetC"
                     /protein_id="HFN5800254.1"
                     /translation="MKEIVLSENALITSKTDLKGNIIYANNDFLKYAGYKVDELLYKS
                     HNIVRHEDMPRTVFKCLWDYIQKGDEIFAFVKNKAKDGNFYWVFANVSASFDTNGNII
                     NYYSVRRAPNRKSLSIIEEVYKILLEKEQKSGINAGVSALMDIVSSYKMTYNELIFNL
                     QENN"
     gene            652..2031
                     /gene="cetA"
                     /locus_tag="ACHFOB_001476"
     CDS             652..2031
                     /gene="cetA"
                     /locus_tag="ACHFOB_001476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetA"
                     /protein_id="HFN5800255.1"
                     /translation="MVKNGLLLTIFLSVIGVLGVIFIHIFVGAIIFVLIAVLMIYLLR
                     QHKDEQIMIDKLLVLCRELKEGNFDNRIIYVKTKSKKLAEIADNLNNTIDGLEAYLRE
                     INTSISCSQKGEFYRKALPEGLKGIFAHNIEFINKALANIEVTARSTFKNALSRTLMD
                     LSLGNQNKDMSQISSSLNQDISMMKNVYDTVDAISHTATENGSEVDSLQSAMGSLMDV
                     VNSSKETVQTFVANSQNITSVVEVIRDIADQTNLLALNAAIEAARAGEHGRGFAVVAD
                     EVRKLAERTQRSTSEISIAIQTMQQDFVNIQSGSEQVFNIVSESEERINKFSQAFKRL
                     EENSSALGVNFGSFAKRLILSVVKIDHILYKSNIYLNLNGAQNFNLESVDPISNLCQD
                     ERAQGVINELSSETELNLAKEFIKDNAKKAIEESSQDYIDQKAYDAIVNDIKSLEQRS
                     AEILAKLKI"
     gene            2049..2546
                     /gene="cetB"
                     /locus_tag="ACHFOB_001477"
     CDS             2049..2546
                     /gene="cetB"
                     /locus_tag="ACHFOB_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bipartate energy taxis response protein CetB"
                     /protein_id="HFN5800256.1"
                     /translation="MSREIFLQEDSLITSKTDLKGKIVYANDDFLKYAGYTMGEVLNK
                     PHNIVRHEEMPKTVFKYLWDYMKEGKEIFAYVKNKTKDNNYYWVFANVTPSIDVNNNI
                     IGYYSVRRMPNKSAISTIESLYSDLLRAEQQQGLNKGVEMLKNFCKDADKTYNELIFS
                     LQEAK"
     gene            2634..4493
                     /gene="mnmG"
                     /locus_tag="ACHFOB_001478"
     CDS             2634..4493
                     /gene="mnmG"
                     /locus_tag="ACHFOB_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HFN5800257.1"
                     /translation="MFDVIVIGGGHAGVEASAAAARMGKKTLLLTTLIEQIGAASCNP
                     AIGGLAKGHLVKELDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRII
                     ARNKLLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHV
                     GENKLQAGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVN
                     PKAFSFRSRNFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIED
                     KINRFSDKESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVEGFENAKITRFG
                     YAIEYDYIEPTELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMK
                     EPLILRRDEAYIGVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLG
                     LLSEQDFTYIQNIANNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVA
                     RASFDIEKLKKLDPIFETMDHYSLREILNEAKYYHYISMQKAQVEKMKNLSELKIPEN
                     FDFKSVSGLSNEVVEKLNHHKPPTIFAASQISGITPAALDILQIYIKMQKKKA"
     gene            4494..>5205
                     /locus_tag="ACHFOB_001479"
     CDS             4494..>5205
                     /locus_tag="ACHFOB_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015105 - arsenite transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0015700 - arsenite transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ArsB/NhaD family transporter"
                     /protein_id="HFN5800258.1"
                     /translation="MLAFFIFLSTLVLLFWRPWNLPIWVFSSLGAFFVFIFQLVDFKD
                     ACFVFSLVWDSSLTLVGLIILSFSLEALGFFDFIASKILYFSREKNQEKIYISTKKMM
                     LFLLIFVFFLSAFFANDGAILIITPIIIALFSTLKDCKNHAFILSSFLLSLSFLCDAS
                     SNALVISNLTNIITANYFKIEFLEFAKNMFLPNFFVLLSTIVTVFVLYVRVLPKRLEF
                     KLIKKEQISLKLFFLCIVF"
BASE COUNT         1825 a          639 c          923 g         1818 t
ORIGIN      
        1 tttgatttat ttgttttatt gggatgtttt aaattatgaa agaaatagtt ttgtctgaaa
       61 atgctttaat tacttctaaa acagatctta aggggaatat catttatgcc aataatgact
      121 ttttaaaata cgcaggttat aaagttgatg aacttttgta taaatctcat aatatagtaa
      181 gacatgaaga tatgccacgc actgtattta aatgtctttg ggattatatt caaaaaggag
      241 atgaaatttt tgcatttgtg aaaaataaag ccaaagatgg taatttttac tgggtttttg
      301 caaatgtaag tgcttcattt gatactaatg gaaatatcat caattattat tctgttcgtc
      361 gtgcacctaa tagaaaatct ctttctataa ttgaagaagt ttataaaatt ttacttgaaa
      421 aagagcaaaa atcgggcatt aatgctggag tttcagcttt aatggatatt gtaagttctt
      481 ataaaatgac ttataatgaa cttattttta acttacaaga aaataattaa ataagatata
      541 tttaatcttt tttattgtat aattttcacc tagaaattaa agtaatatat tattaaagta
      601 ttgtgtttga tttatgactt caaaaaattt tcaatagaaa ggggtaaatt tatggtgaaa
      661 aatggattat tgttaactat ttttctaagt gttatcggtg ttttaggtgt catttttatt
      721 catatttttg ttggagcgat aatttttgtt ttaatcgctg ttttaatgat ttatttgctt
      781 agacaacaca aagatgagca aataatgata gataaacttt tggttctttg tagagagtta
      841 aaggagggta atttcgacaa tagaatcatc tatgtaaaaa caaaaagcaa aaaattagcc
      901 gaaatagcag ataatcttaa caatactatt gatgggctag aagcttactt aagggaaatt
      961 aatacttcta tttcatgttc tcaaaaaggt gaattttatc gtaaggcttt gcctgaaggt
     1021 ttaaaaggaa tttttgctca taatatcgaa tttataaata aagctttagc aaacatagaa
     1081 gtgacagcaa gatctacttt taaaaatgct ttatcaagaa ctttaatgga tttaagcctt
     1141 ggaaatcaaa ataaagacat gtctcaaatt tctagctcat taaatcaaga tattagcatg
     1201 atgaaaaatg tatatgatac agtggatgcc atttctcata cagctacaga aaatggttca
     1261 gaggtggatt ctcttcaaag tgctatgggt tctttaatgg atgttgtaaa ttcgagcaag
     1321 gagacagtac aaacttttgt ggctaattca caaaatatca cttcagtggt tgaagtaata
     1381 cgcgatatag ccgatcaaac caatcttcta gctttaaatg ctgctattga agctgcgcgt
     1441 gcaggagagc atggtagggg ctttgcggtt gtggctgatg aagttagaaa gttagcagaa
     1501 agaactcaaa gatctacaag cgaaatttct attgcaattc agactatgca acaagatttt
     1561 gtaaatatcc aaagtggcag tgagcaagtt tttaacattg ttagtgaatc tgaagaaaga
     1621 attaataaat tttctcaagc ttttaaacgt ctagaagaaa atagtagtgc tcttggtgtt
     1681 aattttggat cctttgcaaa gagattgatt ttgtctgtgg ttaaaatcga tcatattctt
     1741 tataaatcaa atatatattt aaatttaaat ggggctcaaa atttcaatct tgaaagtgta
     1801 gatccaattt ctaatctttg tcaagatgag agagctcaag gtgttattaa tgagcttagt
     1861 tctgaaactg agttaaattt agctaaagaa tttataaaag ataacgctaa aaaagcaata
     1921 gaagaatcaa gtcaagatta tatcgatcaa aaagcttatg atgcgattgt aaatgatatt
     1981 aaatcactag agcaaagaag tgctgaaatc ttagcaaaat taaaaatata aattaagagg
     2041 gtgggaaaat gtcaagagaa atttttttac aagaagatag tttaattact tctaaaacag
     2101 atttaaaagg taaaatagtt tatgcaaatg atgatttttt aaagtatgca ggttatacca
     2161 tgggtgaagt tttaaataaa cctcataaca tagtaagaca tgaagagatg ccaaaaactg
     2221 tttttaaata tttatgggat tatatgaaag aaggcaaaga aatttttgct tacgtaaaaa
     2281 ataaaaccaa agataacaat tactattggg tttttgcaaa tgtaacccca tcaatagatg
     2341 ttaataataa tatcataggc tattattccg ttcgtcgtat gccaaataaa agcgctattt
     2401 ctacaataga aagtctttat agcgatcttt taagagcaga acagcaacaa ggcttaaata
     2461 agggtgttga gatgcttaaa aatttctgca aagatgcaga taaaacttat aatgagctaa
     2521 tcttttctct tcaagaagct aaataaattt ttgttagact taaaacgagt ttgttttaag
     2581 tctaaatatt atataatctt tcttttaaaa attcacattt ttcaaggcaa aatatgtttg
     2641 atgtcattgt tataggtggt ggacatgcag gtgttgaagc aagtgctgct gctgctagaa
     2701 tgggtaaaaa aaccttactt ttaactacat tgattgagca aataggagcg gcaagttgta
     2761 atccagccat aggtggactt gctaaagggc atttggtaaa agaacttgat gccatgggtg
     2821 gtcttatggg tgaaatcacc gatgaagcag ggatacaatt tcgcatttta aatgaaagta
     2881 agggtgtagc cgttcaagga agtagggcac aaattgatat ggataaatac cgtatcattg
     2941 cacgtaataa acttttaaaa cttccaaatt tagaaatttc tcaagaacaa gcgagtgttt
     3001 taatcgtaga aaatgatgaa gttaaaggcg taaaaacaaa tttagaaaat atatattttg
     3061 ccaaaaaagt catcctaaca acaggaactt ttttaaatgg acttattcac gtaggtgaaa
     3121 ataaacttca agcaggaagg gtaggggagc ttgcttcggt aaatttagga aattatctgc
     3181 aaactttggg tttaaaaatg ggacgtttaa aaacaggaac ttgcccaaga gtggatgcaa
     3241 aaagcattga ttttagcgtg cttgaaattc aagatggtga tgtaaatcct aaagctttta
     3301 gttttcgttc aagaaatttc aatcctactc aacttccttg ttatatcgca cgcactaata
     3361 caactacaca tgagattatt aagaataatt tttatcgtgc tccgcttttt acaggacaga
     3421 ttgaaggtgt ggggccaagg tattgtcctt ctatagaaga taagatcaat cgttttagcg
     3481 acaaagaaag tcatcatctt tttatagagc ctcaaactat cgatgcgacg gagtattata
     3541 ttaacggttt ttctacttct ttaccttatg aagtacaaac tcaaatgttg cgttctgtag
     3601 agggttttga aaatgctaaa ataacccgtt ttggttatgc tatagaatat gactatatag
     3661 agccaactga acttaagcat actttagaac ttaaaaagat taaaaatctt tattgtgcag
     3721 gacagattaa tggaactaca ggttatgaag aggctgcagc acaaggcttt atggcgggaa
     3781 tcaatgcaag cttaagcata gatatgaaag agcctttgat tttaaggcgt gatgaagctt
     3841 atataggagt tttaatcgat gatttggtag taaaaggcac aaaagaacct tatagaatgt
     3901 ttacttcaag agcggaattt agactgcttt taagggaaga aaatgctata cttagacttg
     3961 gaaaatatgg ctatgattta gggcttttaa gcgagcaaga ttttacttat atacaaaata
     4021 tcgcaaacaa tcttcaaaaa ggacttgaat ttttactttc taaagaattt acgcctaaca
     4081 accaaaataa tgctttttta gagagtttag gagaagataa aatttcttct atagtcaatc
     4141 ttcaaaaaat tgttgcaaga gcaagttttg atatagaaaa attaaaaaaa cttgacccta
     4201 tatttgaaac catggatcat tactccttaa gagagatttt aaatgaggca aagtattatc
     4261 attacattag tatgcaaaaa gctcaagtag aaaaaatgaa aaatcttagt gagcttaaaa
     4321 ttcctgaaaa ttttgatttt aaaagtgtaa gtggtttgag taatgaggtt gtagaaaagc
     4381 ttaatcatca taaacctcca accatttttg ctgcaagtca aatcagtgga atcactcctg
     4441 cagcgttgga tattttgcaa atttatatca aaatgcaaaa gaaaaaagct taaatgcttg
     4501 ctttttttat ttttttatct actttagttt tacttttttg gcgtccatgg aatttaccta
     4561 tttgggtatt ttctagcttg ggggcttttt ttgtttttat ttttcaattg gtagatttta
     4621 aagatgcttg ttttgttttt tctttggttt gggatagttc tttaactttg gttgggttga
     4681 ttatcctttc ttttagcttg gaagctttgg gattttttga ttttattgcg agtaaaattt
     4741 tgtatttttc tagagagaaa aatcaagaaa aaatttatat cagtacaaaa aaaatgatgt
     4801 tatttttgtt gatttttgta ttttttcttt ctgcattttt tgctaacgat ggagcgattt
     4861 taatcattac acctattatt atagctttat tttcaactct taaagattgt aaaaatcatg
     4921 cttttatttt aagttctttt ttacttagcc tttctttttt atgtgatgca agttcaaacg
     4981 ctttggttat ttcaaattta accaatatca tcacagcaaa ttattttaag atagaatttt
     5041 tagaatttgc taaaaatatg tttttgccaa atttttttgt tttgctttct actatagtta
     5101 cggtttttgt gctttatgtg agagttttac ctaaaaggct tgaatttaaa ttaatcaaaa
     5161 aagagcaaat ttcattgaaa ttgttttttc tttgcatagt atttt
//
LOCUS       DAZBIH010000100         5178 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.101, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000100 DAZBIH010000000
VERSION     DAZBIH010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5178)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5178)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5178
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.101"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..623
                     /locus_tag="ACHFOB_001480"
     CDS             <1..623
                     /locus_tag="ACHFOB_001480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800259.1"
                     /translation="IEKTQEYDKLLNYRDLFRKLKSNRIAHHNLIDASELRAQELYAR
                     ELELKHKENKSLKEKIERWQLVFYRKLCDHHTDLLLNLKWLVVVIGLFALLYFVSRMI
                     QDISLLKALNQYGVCLSIVGVFNLLCLYWFGCIKKFDFFVYLNLIVVLWVICYMPKII
                     FGIVNIIGDKSYNGFENALITIYTILLALVLFSLQKTARKNSIVPS"
     gene            complement(653..1354)
                     /locus_tag="ACHFOB_001481"
     CDS             complement(653..1354)
                     /locus_tag="ACHFOB_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HFN5800260.1"
                     /translation="MKTNNIFMALAIVLASLILAFGFNKALSDFKTLERSVSVKGLSQ
                     KEVEADTLILPIKFTRSNNNLTNLYEELEQDKENIIEFLKEQGVKEDEISYNSPNIID
                     RLSDPYGNDTQATYRYIGTANLLIYTQNVKLGKSILENISSLAKFGIVTKIDNYDIEY
                     LYTKLNEIKPQMIEEATLNARNAAIKFAQDSNSHLGKIKKASQGQFSISNRDKNTPYI
                     KTIRVVSTIEYYLKD"
     gene            complement(1351..2553)
                     /locus_tag="ACHFOB_001482"
     CDS             complement(1351..2553)
                     /locus_tag="ACHFOB_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HFN5800261.1"
                     /translation="MQKHTKIHGFAKFKLIVILALMSSIAPLSTDMYLPALSHVEQSF
                     QTNSFLTQLSIASFFIAFALGQLIYGPLSDIFGRKIPALVGIFFFIVSSLFCVIIDDI
                     YAFIALRFFEALGGCAGVVIARAIVNDLFEIKEAAGIFALMMVFSSLAPMLSPTFGGI
                     LLEYFSWHSIFATLFALGILLFLMILFGLKESAPHLKNKKFSHHEAMKSYKFVLSDKR
                     FLVYILCASFALAAMFAYITGSSFVFTQFFSLSEQKFALLFGANALGFVICANINARL
                     VLKYESEKILAKALMIMFISTVILLANAFFHPNFLLFELSIFTSIAMLGFIAPNTTTL
                     AMARFKEHSGTASGVLGTVQFGFAGLISFVVGAINANTPIILAFVMCACVLVANMIYF
                     LIKIKEKK"
     gene            2656..4005
                     /locus_tag="ACHFOB_001483"
     CDS             2656..4005
                     /locus_tag="ACHFOB_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2130 domain-containing protein"
                     /protein_id="HFN5800262.1"
                     /translation="MQNLNQNEQIKCPSCGSFIDISTALYAQILDKAKQEMLKQKKEF
                     DDEVNAKRAEYIKALNDLKTQKIEQEKLINEQVSQKLLLEKQKFEQELLIQKQNFQKE
                     FSEKFNKEHENEMKIMQEELEKKSKELSEFLSIKAENERLKREQKENEERLKFQAKEE
                     AFKEFKEQENKNLEFEREKMRLEFQKSTQEQDLKYKELETNFKSVAQKLEDAQRRIEQ
                     GSQQLQGEAAELLIEEYIQSEYLSDEVKEVPKGVNGADCLHIVKDNFGNICGSILYES
                     KRTKEFNKEWLDKLKLDSIVAKSDIAVLITKTMPKDKEKTHFKEGILICTFNEFKGVL
                     AVLRESIINAYKLKNALQNKDEKNHILYEYLNSKEFNTQITFILKTYQNMKEELEAEK
                     RALQNIWKKRERAIENLSFNSTAIVSSLNAIFSDLQGGNLIGEEGIKSLDNLAKDED"
     gene            complement(4029..5072)
                     /locus_tag="ACHFOB_001484"
     CDS             complement(4029..5072)
                     /locus_tag="ACHFOB_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="c-type cytochrome"
                     /protein_id="HFN5800263.1"
                     /translation="MKKHILLLGLCLSLSLSAKSVSDYKVGEELSDKEGVEYFKELSK
                     RPVQEWPNKNLSINDVPKGKQGDLIRYGIELLSKTESTLGPYSKLKKTSNEVNCISCH
                     MDNDGNGLPGTKKYVIPFLNILNNYPRLDIETMKIISVEDRIRGMGGTDSHRFPNDSK
                     EMKAILAYFKWLKEAYGIKDGVKLEGDFFAKMNFPNRPADPVRGKKLFEENCVACHGE
                     RGLGVKNDNYEQGSGHLYPSLLIYPDGGHMAMIPFLARFLKSAMPFGASADNPILSDE
                     DALDIAAYVNTGFVRMPITTTENRAGLDTAYSKSPSLKPEYFASPQQNLDPKEYIKVK
                     YGPWKNPNHFPGE"
BASE COUNT         1863 a          828 c          855 g         1632 t
ORIGIN      
        1 agattgaaaa aacacaagaa tatgataaat tattaaatta tagagattta tttagaaaat
       61 taaaaagcaa tcgtatagct catcataatc taattgacgc ttcagaatta agagctcaag
      121 agctttatgc tagagaatta gaattaaaac ataaagaaaa caaaagttta aaagaaaaaa
      181 tagaacgatg gcaacttgtc ttttatcgca agctttgtga tcatcataca gatttgcttt
      241 taaatttaaa atggttggtt gtagtgatag gcttgttcgc tttactgtat tttgtttcac
      301 gaatgattca ggatattagc ttgttaaaag ctttaaatca atacggagta tgtttaagta
      361 tagttggtgt ttttaatttg ctttgtttgt attggtttgg atgtataaaa aaatttgatt
      421 tttttgtgta tcttaatttg attgtagttt tatgggtgat atgttatatg ccgaaaataa
      481 tctttggaat agtaaatatt ataggtgata agagttataa tggctttgaa aatgctttga
      541 ttacgattta taccatactt ttagctttag tccttttctc actccaaaaa accgcacgaa
      601 aaaattccat agtgccaagc taagccttaa agcttagctt gaaattttat catcagtcct
      661 ttaagtagta ttctatagta gaaaccactc ttatggtttt gatataaggg gtgtttttat
      721 ctctgttgct gatgctaaat tgtccttgag aagccttttt tatcttgcct agatggctgt
      781 ttgaatcttg tgcgaatttt atcgctgcat ttctagcatt gagtgttgct tcttctatca
      841 tttgaggttt tatctcattt agcttggtgt aaaggtattc tatgtcataa ttatcgattt
      901 tcgttactat gccaaatttt gcaagacttg aaatgttttc tagtatgctt tttccaagct
      961 ttacattttg cgtatagatg agtaaattcg cagtgcctat gtatcggtat gtagcttgag
     1021 tgtcgttgcc ataaggatcg cttaaacgat ctatgatatt tggcgagttg tagctgatct
     1081 catcttcttt tacgccttgt tcttttaaaa attcaatgat attttcttta tcttgttcta
     1141 gttcttcgta taaatttgta agattgttat ttgatcttgt gaattttata gggagtatca
     1201 aagtatccgc ttcgacttct ttttgactta aaccctttac acttacactt ctttcaagtg
     1261 ttttaaaatc acttaaagcc ttgttaaatc caaaagctag aatcaaactt gccaaaacta
     1321 tggctaaagc cataaagata ttatttgttt tcattttttc tcctttattt tgattagaaa
     1381 atatatcata tttgcaacca atacgcaagc acacattaca aaagcaagga ttatcggcgt
     1441 atttgcgtta atagccccaa ccacaaaaga aataagccct gcaaaaccaa attgcaccgt
     1501 tccaagcacc ccagaagcag ttccgctatg ttctttaaac cttgccatag ccaaagtcgt
     1561 ggtattgggt gcgatgaaac caagcatagc gatacttgta aaaatactaa gttcaaaaag
     1621 caagaaattt gggtgaaaaa aggcatttgc aagtaaaatc acagtcgata taaacattat
     1681 catcaaagct tttgccaaaa ttttttcgct ttcgtatttt aaaaccaatc ttgcattgat
     1741 atttgcacag atgacaaaac ctaaagcatt tgccccaaaa agcaaagcaa atttttgctc
     1801 acttaagcta aaaaactgcg taaaaacaaa gcttgatcct gtgatataag caaacatcgc
     1861 cgccaaagca aaagaagcac atagtatata aactaaaaag cgtttatcgc ttaaaacaaa
     1921 tttgtagctt ttcatcgctt catgatggga aaattttttg tttttaagat gaggtgcgga
     1981 ttcttttaaa ccaaaaagta tcatcaaaaa aagtaaaatt cctaaagcaa acaaagtcgc
     2041 aaaaatacta tgccatgaaa aatactctag caaaattccc ccaaaagttg gcgaaagcat
     2101 aggagcaaga gaactaaaaa ccatcatcaa agcaaaaatc cctgcagctt ctttgatctc
     2161 aaacaagtca ttgacaatag cccttgcgat aaccacacct gcacaacccc caagtgcttc
     2221 aaaaaatctc aaagcgataa aagcataaat atcatcgata atcacacaaa acaaactcga
     2281 aacgatgaag aaaaatatcc ccaccaaagc tggaatttta cgcccaaaaa tatcacttaa
     2341 aggcccatat ataagctgtc ctaaagcaaa agcgataaaa aaacttgcga tactaagttg
     2401 ggttaaaaaa gaattagttt gaaaactttg ctccacatga gaaagtgcgg gtaaatacat
     2461 atctgtagaa agtggcgcta tgcttgacat caaagcaagg ataacgatga gtttaaattt
     2521 agcaaagccg tgaattttgg tgtgtttttg catttgtaat cctaattatt ctaaaagaat
     2581 gattttaaca agtcaatctt agaataatct ttgtttttct atgttaaatt tagggaaaaa
     2641 ttctaaggaa attttatgca aaatttaaac caaaatgaac aaatcaaatg cccaagttgt
     2701 ggaagtttta tcgatatcag cactgcttta tatgctcaaa ttttagataa agctaagcaa
     2761 gaaatgctaa aacaaaaaaa agaatttgat gatgaggtaa atgctaaaag agctgaatat
     2821 atcaaagctt taaatgattt aaaaactcaa aagatagaac aagaaaaact cataaacgag
     2881 caagtaagcc aaaagcttct tttagaaaag caaaaatttg aacaagaact tcttatacaa
     2941 aagcaaaatt tccaaaaaga attcagcgag aaatttaaca aagagcatga aaatgaaatg
     3001 aaaatcatgc aagaagaact cgagaaaaaa agcaaagagc ttagcgagtt tttaagcata
     3061 aaggctgaaa atgaaagact taaaagagaa caaaaagaaa atgaagaaag actgaaattt
     3121 caagccaaag aagaggcttt taaagaattt aaagaacaag aaaacaaaaa tttggaattt
     3181 gaaagagaaa aaatgcgtct tgaatttcaa aaaagcactc aagagcaaga tcttaaatac
     3241 aaagaactag aaacgaattt taaaagcgta gcccaaaagc tagaagacgc acaacgcagg
     3301 atagaacaag gctcacagca actccaaggc gaagcagccg aactactcat agaagaatac
     3361 atacaaagtg agtatttaag tgatgaagta aaagaagtac caaagggcgt aaatggagct
     3421 gattgtctgc atatagtaaa ggataatttt ggaaatattt gcggaagtat tttatatgag
     3481 agtaaacgca ctaaagaatt taataaagaa tggcttgata aacttaaact agatagtata
     3541 gttgcaaaaa gtgatatagc ggttttgatt acaaaaacta tgccaaaaga taaagaaaaa
     3601 acgcatttta aagaaggaat tttgatttgt acttttaatg aattcaaagg cgttttagca
     3661 gtgcttagag aaagcattat caacgcttac aaactcaaaa atgccctgca aaacaaagat
     3721 gaaaaaaatc acattttata cgaatactta aattccaagg aatttaacac gcaaatcact
     3781 tttatactca aaacttatca aaatatgaaa gaagaattag aagctgaaaa aagagctttg
     3841 caaaatatat ggaaaaaaag agaaagagct atagaaaatc taagttttaa ttccactgcc
     3901 atagtgagtt ctttaaatgc gatatttagt gacttacaag gtggaaattt gataggcgaa
     3961 gaagggatta aaagtcttga caatttagcc aaagatgagg attaattttg ggcttagccc
     4021 aaaattaatc attctcctgg gaagtgattt ggatttttcc aaggtccgta ttttactttt
     4081 atgtattctt tagggtctaa attttgttgc ggtgaggcaa aatactcagg ttttaatgat
     4141 ggggatttgc tataagctgt atcaagtcct gcacgatttt ctgtagtggt tataggcatt
     4201 cttacaaaac ctgtattgac ataagctgct atatctagcg catcttcatc gcttaatata
     4261 ggattatccg cactcgcacc aaaaggcatg gctgatttta aaaatcttgc taaaaatggt
     4321 atcatagcca tgtgtccacc atcaggatag ataagtaaag atggatataa atgtccgcta
     4381 ccttgttcgt aattatcatt ttttacccca agtcctcttt cgccatgaca agcaacgcaa
     4441 ttttcttcaa agagcttttt cccacgcaca gggtcagctg ggcgatttgg aaaattcatc
     4501 ttagcaaaaa aatctccttc aagttttaca ccgtctttga taccataagc ttcttttagc
     4561 catttaaaat aagctaaaat tgctttcatt tctttagaat cattaggaaa tctatgagag
     4621 tcagttccgc ccattccgcg aattctatct tcaacagaga tgattttcat cgtttctatg
     4681 tcaagtcttg gataattgtt taggatattt aaaaatggaa taacatattt ttttgtccct
     4741 ggcaaaccat tgccgtcatt gtccatgtga caggaaatac aatttacttc gttgcttgtc
     4801 ttttttagct tgctataggg tcctagagta ctttctgtct tgcttaaaag ctctatgcca
     4861 taacggatta aatccccttg cttgcctttt ggaacatcat tgatgcttaa atttttattt
     4921 ggccattctt gcacaggtct tttggaaagt tccttaaaat actctactcc ttccttgtcg
     4981 cttaattctt ctcctacttt gtaatcactc acgcttttag cactaagact caaactaaga
     5041 cataagccaa gcaataaaat gtgttttttc atgattttcc tcctttttat ttgcagttca
     5101 aattgatttt aatgtatttt ttcttaaata ttaagcataa taagaataat ttaaataaaa
     5161 ttaaatttta aagtgtta
//
LOCUS       DAZBIH010000101         5069 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.102, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000101 DAZBIH010000000
VERSION     DAZBIH010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 5069)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5069)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5069
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.102"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..632
                     /locus_tag="ACHFOB_001485"
     CDS             <1..632
                     /locus_tag="ACHFOB_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800264.1"
                     /translation="NKELQANISDFDDLPEVEEQEKEMDFDDLPEDAEFLGQAKYNEE
                     SEENLEEFAPVVEEDIQDEIDDFASNLSTQDQIKEELAQLDELDYGIDSDNSSKVLED
                     FKDEPILDDKELGTNEEEVVVPNLNISDFDTLKESDIQEALGEEILEKNEEPIVSDVT
                     KDDNSEEIVNELSQSIAGAITSSIKDDTLKAALKGMNMNININISFKED"
     gene            629..1252
                     /gene="gmk"
                     /locus_tag="ACHFOB_001486"
     CDS             629..1252
                     /gene="gmk"
                     /locus_tag="ACHFOB_001486"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004385 - guanylate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0006163 - purine nucleotide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HFN5800265.1"
                     /translation="MKLQGFVLLISGPSGAGKSTLLKKLFDEFEDELYFSISSTTRKP
                     REGEKNGIHYHFISHEEFQKGIDSDHFLEWARVHENFYGTSLKHTQNALDNGKIVVFD
                     IDVQGFKIARKKMADKIVSVFITTKNKDELKKRLIKRNTDTIIQLEKRLQNASDEMKE
                     LSEYDYLIINDELKQSYEALRAILIAHKFRTKGQNLGQIQNIWNEGE"
     gene            1254..1493
                     /locus_tag="ACHFOB_001487"
     CDS             1254..1493
                     /locus_tag="ACHFOB_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HFN5800266.1"
                     /translation="MGGWSSPSHWLIILLIVVLLFGAKKIPELAKGLGKGIKTFKDEM
                     NNDDEVAKNTQKIEENKNTTNNTNADASIDETKKA"
     gene            1505..3097
                     /gene="argS"
                     /locus_tag="ACHFOB_001488"
     CDS             1505..3097
                     /gene="argS"
                     /locus_tag="ACHFOB_001488"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HFN5800267.1"
                     /translation="MKSIIFNEIKKILECDFALENPKDKNLAHFATPLAFSLAKELKK
                     SPMLIASDLASKFQNHDCFELVEAVNGYLNFRISKTFLNELANQALTNPNDFTKGEKK
                     QESFLLEYVSANPTGPLHIGHARGAVFGDTLTRLARHLGYKFDTEYYVNDAGNQIYLL
                     GLSILLSVKENILHENVEYPEQYYKGEYIADLAKEAFEKFGKEFFSEENIPSLADWAK
                     DKMLVLIKQNLEQVKIKIDSYVSERSYYDALNATLESLKEHKGIYEQEGKIWLASSQK
                     GDEKDRVIIREDGRGTYLAADIVYHKDKMSRGYGKCINIWGADHHGYIPRMKAAMEFL
                     GFDSNNLEIILAQMVSLLKDGEPYKMSKRAGNFILMSDVVDEIGSDALRYIFLSKKCD
                     THLEFDISDLQKEDSSNPVYYINYAHARIHQVFAKAGKKIDDVMKADLQSLNQDGVNL
                     LFEALNLKAVLNDAFEARALQKIPDYLKNLAANFHKFYNENKVVGSANENDLLKLFSL
                     VALSIKTAFSLMGIEAKNKMEH"
     gene            complement(3115..3423)
                     /locus_tag="ACHFOB_001489"
     CDS             complement(3115..3423)
                     /locus_tag="ACHFOB_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN5800268.1"
                     /translation="MYIFIIVLSALLDIVANLLLKKSDGFKNKIWGLAAIVNAILAFF
                     LLSFSLKYVPLSIAYSTWGAIGIIGTCLGGWILYKEKLNKIGILGIIIVIIAVFLLNY
                     "
     gene            complement(3423..3764)
                     /locus_tag="ACHFOB_001490"
     CDS             complement(3423..3764)
                     /locus_tag="ACHFOB_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HFN5800269.1"
                     /translation="MNIAKKELFVAWFFLITAIVFEVLGTSFLKMENQILGYIFMALF
                     IAFSYFFMGKAIKKIQVGIAYAVWELLGIILILLVSFIVFKESLTLTQILGIVLSIVG
                     IIMINIGEVKE"
     gene            3873..4580
                     /locus_tag="ACHFOB_001491"
     CDS             3873..4580
                     /locus_tag="ACHFOB_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HFN5800270.1"
                     /translation="MGRAFEYRRASKEARWDKMSKLFPKLAKAIQVAAKEGGTDPDMN
                     PKLRSAIATAKANNMPKDNIDAAIKRASGKDSADIKNIHYEGKAAHGALVIVECMSDN
                     PTRTVANVKAIFSKNGGEVLQNGSLGFMFTRKAVFHLEKFAGDLEELELDLIDAGLEE
                     LEQNEEELVISGDYTAFGELSSAIETKGLVLKKAGLEYIPNNPVSFSEEQLSDIEKLL
                     DKLEDDDDVQAVYTNID"
     gene            4590..>5069
                     /locus_tag="ACHFOB_001492"
     CDS             4590..>5069
                     /locus_tag="ACHFOB_001492"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA];
                     GO_process: GO:0000413 - protein peptidyl-prolyl
                     isomerization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HFN5800271.1"
                     /translation="MIKTIDTSKVNEYKFALIETEKGTMKLKLFGDEAPQTVCNFATL
                     ANEGFYKDLNFHRVIPNFVIQGGCPHGNGVGGPGYEIICECDDQEHKHERGTLSMAHA
                     GRDTGGSQFFICHSPQAHLDGVHTVFGQIDPKDEESLEVLDSIRQGDKILDIKICDKI
                     "
BASE COUNT         1917 a          647 c          960 g         1545 t
ORIGIN      
        1 ataataaaga attacaagct aatataagcg attttgatga tcttcctgag gttgaagagc
       61 aagaaaaaga aatggatttt gatgatcttc ctgaggatgc tgaattttta ggtcaagcaa
      121 aatataatga agaatcagag gaaaatttag aggagtttgc tcctgttgtg gaagaagata
      181 ttcaagatga aatagatgat tttgcttcaa atttgagtac tcaagatcaa atcaaagaag
      241 aactagctca acttgatgag cttgattatg gtattgatag tgacaatagt agcaaggtct
      301 tagaagattt taaagatgaa ccaattttag acgataaaga attaggaaca aatgaagagg
      361 aagtggttgt gccaaattta aatataagtg attttgatac attgaaagaa agtgatatac
      421 aagaagctct tggagaggaa atcttagaaa aaaatgaaga gcctatagta agtgatgtaa
      481 ctaaagatga taatagcgaa gagatagtta atgagcttag ccaaagcata gcaggagcga
      541 tcacttcaag tattaaagat gataccttaa aagctgctct taagggtatg aatatgaata
      601 taaatataaa cattagtttt aaagaggatt gaaattgcaa ggttttgttt tgttgatttc
      661 aggtcctagt ggtgctggaa aatcaactct tttaaaaaaa ctttttgatg aatttgaaga
      721 tgagctttat ttttctattt cttcaacaac tcgcaaacca agagagggtg aaaaaaatgg
      781 aatacattat cattttatat cccatgaaga atttcaaaaa ggtatagata gtgatcattt
      841 tttagaatgg gctagagtgc atgaaaattt ttatggtact tctttaaagc acactcaaaa
      901 tgctttagat aatggaaaaa tagttgtttt tgatattgat gtgcaaggat ttaaaatagc
      961 tagaaaaaaa atggctgata agattgtttc tgtttttatt actacaaaaa ataaagatga
     1021 gttaaaaaaa agacttatta agcgaaatac tgatacaata atacaactag aaaaaagatt
     1081 acaaaacgct agtgatgaaa tgaaagagct tagcgagtat gattatctta tcattaatga
     1141 tgagttgaag caaagttatg aagcattgcg agcgatttta atcgcccata aatttagaac
     1201 caaagggcag aatctagggc aaattcagaa tatttggaat gaaggagaat aaaatgggtg
     1261 gttggtcaag tccaagtcat tggttgatta ttttattgat tgttgtattg ctttttggag
     1321 caaaaaaaat tccagaactt gcaaagggtt taggcaaagg tattaaaact tttaaagatg
     1381 aaatgaataa tgatgatgaa gtagcaaaaa atactcaaaa aatagaagaa aacaaaaaca
     1441 caactaataa tacaaatgct gatgcaagta tagacgaaac aaaaaaagct taaggtttag
     1501 tcttttgaaa agtattattt ttaatgaaat taaaaagatt ttagagtgtg attttgcgct
     1561 tgaaaatcca aaggataaaa atttagcaca ttttgctacc cctttggctt tttcactggc
     1621 taaggaatta aaaaaatccc ctatgttgat cgctagcgac ttagcgagca aatttcaaaa
     1681 tcatgattgt tttgaattag ttgaagctgt aaatgggtat ttaaatttta gaatttccaa
     1741 aactttttta aatgaacttg caaatcaggc tttaacaaat ccaaatgatt ttactaaagg
     1801 agaaaaaaaa caagaaagtt ttttgcttga atatgtgagt gcaaatccta ctgggccttt
     1861 acacatagga catgcaagag gcgctgtttt tggagacacc ttaacaagac ttgcaagaca
     1921 tttgggctat aaattcgata cagaatacta tgtcaatgat gcgggtaatc aaatttattt
     1981 actagggctt tctattttac taagtgtgaa agaaaatata cttcatgaaa acgttgaata
     2041 tccagagcaa tattacaaag gcgagtatat agcggattta gcaaaagaag cttttgaaaa
     2101 atttggtaaa gaatttttta gcgaagaaaa tatccctagt ttggctgatt gggcaaaaga
     2161 taaaatgctt gttttgatta aacaaaattt agaacaagta aagattaaaa ttgacagcta
     2221 tgtaagcgaa agatcgtatt atgatgcttt aaatgcaact ttagaatctt taaaagagca
     2281 taaaggaatt tacgagcaag aaggtaaaat ttggcttgct tcttcgcaaa aaggcgatga
     2341 aaaagatagg gtaattattc gtgaagatgg acgtgggact tatttggcag cagatattgt
     2401 ttatcataaa gataaaatga gtcgtggtta tggaaagtgt attaatatct ggggagcaga
     2461 tcatcatggt tatatcccta gaatgaaagc tgcgatggaa tttttgggat ttgactctaa
     2521 taatcttgag attattttag cacaaatggt ttccctactt aaagatggag aaccttataa
     2581 aatgagtaaa agagcaggaa attttatctt gatgagcgac gtggttgatg agataggaag
     2641 tgatgctttg cgttatatct ttttgagtaa aaaatgcgat actcatttgg aatttgatat
     2701 tagtgatttg caaaaagaag atagctctaa tcctgtatac tatatcaact atgcacacgc
     2761 tagaattcat caagtgtttg ctaaagctgg taaaaaaatc gatgatgtaa tgaaagctga
     2821 tttgcaaagt ttaaatcaag atggcgtaaa tttgcttttt gaagctttga atttaaaggc
     2881 tgttttaaac gatgcttttg aggctagagc tttgcaaaaa attcctgatt atcttaaaaa
     2941 tttagctgca aattttcata aattctacaa tgaaaataaa gttgtaggct ctgcaaatga
     3001 aaatgatttg cttaaattat tttctttggt tgctcttagt attaaaaccg cattttcttt
     3061 aatgggtatt gaagcaaaaa acaaaatgga acattaaaac cgcattttgc tgttttaata
     3121 gtttagtaaa aatactgcta ttatcacgat aatgatacct aaaattccta ttttgtttaa
     3181 tttttcttta tataaaatcc atccaccaag acaagttcct atgatgccta tagcacccca
     3241 agttgagtaa gctatgctta aaggaacata ttttaaagaa aaagaaagta gaaaaaaagc
     3301 aagtatagca ttgacaatcg cagctaagcc ccaaatttta ttcttaaaac catctgattt
     3361 ttttagcaat aaatttgcta cgatatctaa caatgccgat agaacaataa taaaaatata
     3421 cattattctt taacctcgcc tatgttaatc atgataattc caacgataga aagaacaatg
     3481 cctagaattt gagttaaggt taaactctct ttaaaaacta taaaagaaac taaaagtata
     3541 agaataatcc ctaaaagttc ccatacagca taggctatgc ctacttgaat ttttttaatc
     3601 gccttgccca taaaaaaata agaaaaagct ataaataaag ccataaatat atagcctaaa
     3661 atttgatttt ccatttttaa aaaactagta cctaaaactt caaatacaat agcagtaatc
     3721 aagaaaaacc aagcaacaaa aagttctttt tttgcgatat tcaaaaagct tctccctaaa
     3781 aataaatggt aaaatcatac catttaaagc tttaattagc ctttttagtt tatactttta
     3841 agtttaaaaa tctttaaaga aagtgagaat ttatgggacg agcgtttgaa taccgaagag
     3901 cttctaaaga ggctagatgg gataaaatga gtaagctttt tcctaagctt gctaaagcca
     3961 tacaagtagc tgctaaagaa ggtggcactg atcctgatat gaatccaaaa ttaagaagtg
     4021 ctatagccac agcaaaagca aataatatgc caaaagataa tatagatgcg gctattaagc
     4081 gtgcgagtgg aaaagatagc gcagatatta aaaacattca ttatgaagga aaagctgcac
     4141 atggagcttt ggttatagtt gaatgtatga gcgataaccc tacgcgcacc gtggctaatg
     4201 ttaaagccat ttttagcaaa aatggtggag aagttttaca aaatggatct ttaggcttta
     4261 tgtttactag aaaagcggtt tttcatcttg aaaaatttgc aggagattta gaagaattag
     4321 aacttgattt gatcgatgca gggcttgaag aattagaaca aaatgaagaa gagttagtaa
     4381 ttagcggtga ttatactgcc tttggtgagc taagttctgc tatagagact aagggtttag
     4441 ttcttaaaaa agcaggactt gagtatatac caaacaatcc tgtaagcttt agcgaagaac
     4501 agcttagcga tatagaaaaa cttttagata agttagaaga tgatgatgat gttcaagctg
     4561 tttatacaaa tatagattaa ggagaaataa tgataaaaac aatcgacaca agcaaagtaa
     4621 atgaatacaa atttgctctt atagaaactg aaaaaggcac aatgaaatta aaactttttg
     4681 gcgatgaggc tccacaaacg gtttgtaatt ttgctacttt ggctaatgaa gggttttata
     4741 aagatttaaa ttttcatcgt gtgatcccaa attttgtcat acaaggaggt tgtccacacg
     4801 gcaatggtgt aggtgggcct ggatatgaaa tcatttgcga atgtgatgat caagagcata
     4861 agcatgagcg tggaacctta tctatggcac acgcaggacg cgatacgggt ggttctcaat
     4921 ttttcatttg tcacagccct caagctcatt tagatggagt tcatactgtt tttgggcaaa
     4981 ttgatccaaa agatgaagaa agtttagaag ttttggactc catacgccaa ggagataaaa
     5041 ttttagacat aaaaatttgc gataaaatt
//
LOCUS       DAZBIH010000102         4993 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.103, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000102 DAZBIH010000000
VERSION     DAZBIH010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4993
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.103"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..900)
                     /locus_tag="ACHFOB_001493"
     CDS             complement(<1..900)
                     /locus_tag="ACHFOB_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HFN5800272.1"
                     /translation="MKSVKLKVSLIANLIAVVCLIILGVVTFIFVKQAIFHEVVNAEI
                     NYVKTAKNSIESFKARNSLALESLAKSILKHPIEQLDSQDALMHYVGKDLKNFRDAGR
                     FLAVYIAQPNGELVVSDPDSDAKNLDFGTYGKADNYDARTREYYIEAVKTNKLYITPS
                     YIDVTTNLPCFTYSIPLYKDGKFIGVLAVDILAADLQAEFENLPGRTFVFDEENKVFV
                     STDKALLQKGYDISAIANLAKTKEDLEPFEYTRPKDGNERFAVCTKVSGIYTACVGEP
                     IEQIEAPVYKIAFIQTAIVIFTSI"
     gene            1099..1989
                     /locus_tag="ACHFOB_001494"
     CDS             1099..1989
                     /locus_tag="ACHFOB_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HFN5800273.1"
                     /translation="MKKILLFILSLGIFYTFTQAKNLEQEQNTSSNLVSVSIAPQAFF
                     VKKIAANTLDVNVILPPNSNEHNFEFKPSTMKKLEKSDIYFTIGLEFEKVFTDKFKQN
                     FSKLQVVNMQKNIALIQTHDTHEHSHEHEHHEHEHFDPHTWLDPILVQTMALNIYDTL
                     IQKYPQNENLYKENLDKFLAELDSLNLQIASKLEKLKNREFVVYHPSWTYFAKRYNLT
                     QIPVEILGKEPKSKDLQKLITLMKDKNLKVIFVQNGFPENAAKTLAKECDAKIYKIDH
                     LSYDWENELLKTADAFSHNL"
     gene            2002..2856
                     /locus_tag="ACHFOB_001495"
     CDS             2002..2856
                     /locus_tag="ACHFOB_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HFN5800274.1"
                     /translation="MLFFEISNLNYAYNNEIILKNINLSYDNKDFLSIIGPNGAGKST
                     LVKLILGLLKSKNEIHFKALQKKEIGYVPQHTLANPNFCPRVLEIVLMGLVSKKIFGF
                     YGKKDKEKAMQALKSVGMEKFWNKTIDSLSGGQRQRVFIARALASECKMLILDEPTAS
                     VDNKSAIQIFELLSSLHQKGMGILLICHDINLVLAYSDKIAHLNKELFLHTNTKEKEK
                     SSFLKHLYENHSHFCDVEMSLNTCFCDEKNCDSKKLCEQEFTRRNLKKTEFKKENFCL
                     KFSKENNA"
     gene            2849..3652
                     /locus_tag="ACHFOB_001496"
     CDS             2849..3652
                     /locus_tag="ACHFOB_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HFN5800275.1"
                     /translation="MLEILNFTFFQNALLGAILVSIACGIIGTLVMINRLFSMAGGIT
                     HGAFGGIGIAFYFSLPILLSTGIFTLFLAFLVAFLAKRYEHRSDSIIAVIWAFGMAVG
                     IILIDLSPSYNTDLMAYLFGSILAVGTQDLWLMALVDSVVVLLIFLFYRQFEALSFDA
                     EFAKVRGINTSFFHYLLIALMAFCIVISIRLVGLILVMALLSIPSFIAENFTKKLGFI
                     MVLASFLSMIFCVLGLILSYYLNLSSGACIIAVACFGFLMHLIGKFLKR"
     gene            complement(3641..4978)
                     /locus_tag="ACHFOB_001497"
     CDS             complement(3641..4978)
                     /locus_tag="ACHFOB_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011989537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrC family protein"
                     /protein_id="HFN5800276.1"
                     /translation="MKTSNTFSIIEHQAFSKEDLKEIFKEKAEGFYKELEDFAKNNEN
                     LLGFKNKNTLKAKNYVGIIQTKSGVLEILPKCTNLDSYKKEDSSSNHDKEKLKRYYEL
                     DNISKNNDFYEQDFKFNPKNLLINMLKTLKNFPFKKSQISSLQSSKIPLFEVFITMFL
                     DEFDSVYKKGLMRSYLSCEENRAFLKGKLLFNEHIKRNLIHKERFFTSNDEFVLDIAP
                     NRLIKSTLNFLKSKTSLNKFRLIKSMQILDEVEFSKNYEKDFSYKISRHFDYYENLLL
                     WCKIFLKNESFMPYHGKNEAFALLFPMEKIFEDYVAYMLKKVNPAQDIKVQNNGKYLI
                     SKNDENCFMLKPDLYIENKMILDTKWKIPNDSEDEKKQGIEQSDLYQMFAYACKFKIY
                     DIKLVYPLCEKTQDLQRKIAEKFFVFKASEHLYFKEQGQKDIKVQVCFAPLPF"
BASE COUNT         1730 a          735 c          671 g         1857 t
ORIGIN      
        1 aatacttgta aaaataacaa tcgcagtttg tataaatgca attttataaa ctggagcttc
       61 tatttgttct attggctctc caacgcaagc agtataaatt ccagaaacct ttgtgcatac
      121 agcaaatctt tcattaccat cttttggtct agtatactca aaaggttcaa gatcctcttt
      181 agttttagca agatttgcaa ttgcactaat atcataacct ttttgtaaaa gagctttgtc
      241 tgtagaaaca aatactttat tttcttcatc aaatacaaaa gttctacctg gtaaattttc
      301 aaattcagct tgcaaatctg ccgcaagaat atctacagcc aaaaccccta taaatttacc
      361 atctttataa agcggaatag aatatgtaaa gcaaggtaaa tttgtagtta catcaatata
      421 agatggggta atataaagtt tatttgtttt aactgcttct atataatact ctcttgttct
      481 agcatcataa ttatcagctt ttccataagt tccaaaatct aaatttttag catcagagtc
      541 tggatcgctt acaacaagtt cgccatttgg ttgagcaata taaactgcta agaatcttcc
      601 agcatctcta aaattcttta aatcttttcc aacataatgc attaaagcat cttgactatc
      661 taactgttct ataggatgct ttaaaatact tttagctaaa ctttcaagag ctaaagaatt
      721 tcttgcctta aaagactcta tagaattttt agccgtttta acataattta tttcagcatt
      781 cacaacttca tgaaaaattg cttgctttac aaatataaat gttacaacac ctaaaattat
      841 caaacacact actgcgatta aatttgcaat cagtgaaacc ttcaatttta cgcttttcat
      901 aatttaagcg ctcctttact aatattattt tatagagata tctacataaa gttttagaat
      961 tataaattaa aaaatctaga tttttactta aatataaaag taataaaaaa ttttatttaa
     1021 ataaatatcg cttcgaaaat tctatgtatt aagcttaata tcgttataat ttaaaaaatt
     1081 tatatcgaag gaaatatttt gaaaaaaatt ctattattta tcttatcttt agggatattt
     1141 tatactttca cacaagctaa aaatttagag caagaacaaa atactagtag caatttagtt
     1201 agtgtcagta tagcacctca agcatttttt gttaaaaaaa tagctgcaaa tactctagat
     1261 gtcaatgtta ttttgccccc aaatagcaat gagcataatt ttgaatttaa accaagtact
     1321 atgaaaaaac ttgaaaaaag tgatatttat ttcactatag gcttagaatt tgaaaaagtt
     1381 tttacggata aatttaaaca aaatttttca aaacttcaag ttgtaaatat gcaaaaaaac
     1441 atagctttga ttcaaactca tgatacacac gaacactctc atgagcatga acaccacgaa
     1501 catgagcatt ttgatcctca tacttggcta gatcctattt tagtccaaac tatggcttta
     1561 aatatttatg acaccttaat tcaaaaatat ccacaaaatg aaaatttata taaagaaaat
     1621 ttagataaat ttttagcaga attagatagt ttaaatttac aaattgcctc aaaattagaa
     1681 aaattaaaaa atagagaatt tgtagtttat catccttctt ggacatattt tgcaaaacgc
     1741 tataatctta cgcaaattcc tgtagaaatt ttaggtaagg aaccaaaaag caaagatttg
     1801 caaaaactta tcactctaat gaaagataaa aatttaaaag tcatttttgt tcaaaatggt
     1861 ttccctgaaa atgcagcaaa aacacttgct aaagaatgtg atgcaaaaat ttacaaaata
     1921 gatcatttat cttatgattg ggaaaatgag cttttaaaaa ctgctgatgc cttttctcat
     1981 aatttataat caggtttttt gatgcttttt tttgaaattt ctaatctaaa ctacgcttat
     2041 aataatgaaa tcatcttaaa aaacatcaat cttagctatg acaataaaga ctttctctct
     2101 atcataggtc caaatggcgc aggaaaatca acactcgtaa aacttatctt aggactttta
     2161 aaatccaaaa atgaaatcca tttcaaagct cttcaaaaaa aagaaatagg ctatgttcct
     2221 caacacactc tagccaatcc taatttttgt ccaagagtac ttgaaatcgt tcttatggga
     2281 cttgtaagta aaaaaatttt tggtttttat gggaaaaaag ataaagaaaa agctatgcaa
     2341 gctttaaaaa gtgtaggaat ggaaaaattt tggaacaaaa ccattgattc tctaagtgga
     2401 ggacaaagac aacgtgtttt tatcgcaaga gccttagcta gtgaatgcaa aatgcttatt
     2461 ttagatgaac ctaccgcaag cgttgataac aagtctgcta tacaaatttt tgaacttcta
     2521 agctctttgc accaaaaagg catgggaatt ttactcattt gtcacgatat caaccttgta
     2581 ttagcttata gcgataaaat tgcacattta aacaaagaac ttttcttgca tactaacact
     2641 aaagaaaaag aaaaaagttc atttttaaaa catttatacg aaaatcactc tcatttttgt
     2701 gatgtagaaa tgagtttaaa tacttgtttt tgcgatgaaa aaaattgcga tagcaaaaaa
     2761 ctatgcgaac aagaatttac aagaagaaat ttgaaaaaaa cagaatttaa aaaagaaaat
     2821 ttttgtttaa aattttcaaa ggaaaataat gcttgaaatt ttaaatttca ccttttttca
     2881 aaacgcttta ctaggagcga ttttagtcag tatagcttgt gggatcatag gtactttggt
     2941 gatgataaat cgcctttttt ctatggctgg aggtataaca catggggctt ttggtggtat
     3001 aggtatagct ttttatttct ctttgcctat tttattaagc acgggaatat ttactttatt
     3061 tttggctttt ttagtagctt ttttagctaa acgctatgaa cacagaagtg atagtattat
     3121 cgctgtaatc tgggcttttg gaatggctgt tgggattatt ttaatcgatt taagccctag
     3181 ttataacaca gatttaatgg cttatctttt tgggagcatt ttagctgtag ggacgcaaga
     3241 tttatggctt atggctttgg ttgatagcgt ggtggtgctt ttgatctttt tattttatag
     3301 acaatttgaa gcattaagct ttgatgcgga atttgcaaaa gttcgtggta tcaatacaag
     3361 tttttttcat tatcttttaa tcgcccttat ggctttttgt atagttattt ctatacgcct
     3421 tgtagggctt attttggtta tggctttact tagtatccca agctttattg ctgaaaattt
     3481 caccaaaaaa cttggcttta tcatggtttt agcaagtttt ttaagtatga ttttttgtgt
     3541 tttaggactt atacttagct attatcttaa cctctcaagc ggtgcttgta tcatagctgt
     3601 agcttgtttt ggttttttaa tgcatttgat aggcaaattt ttaaaaaggt aaaggtgcaa
     3661 aacacacttg cacttttata tctttttgcc cttgttcttt aaaatacaaa tgttcgcttg
     3721 ccttaaaaac aaaaaatttt tctgcgattt ttctttgtaa atcttgagtt ttttcacata
     3781 aaggatacac aagtttaata tcataaattt taaatttgca agcataagca aacatttgat
     3841 acaaatcgct ttgttctata ccctgttttt tctcatcttc actatcattt ggaattttcc
     3901 atttggtatc taggatcatt ttattttcta tatataaatc aggctttaac atgaaacaat
     3961 tttcatcatt ttttgagatt aaatactttc cattgttttg aactttaata tcttgagctg
     4021 gatttacttt ttttagcata taagctacat aatcttcaaa aattttctcc ataggaaaaa
     4081 gcaaagcaaa agcttcattt ttaccatgat aaggcataaa actttcattt tttaagaaaa
     4141 ttttacacca caaaagcaag ttttcataat aatcaaaatg tcttgaaatt ttataactaa
     4201 aatctttttc ataattttta gaaaattcta cctcatcgag aatttgcata gattttataa
     4261 gtctaaattt attcaaactt gtttttgatt ttaaaaaatt tagcgttgat tttatcaaac
     4321 gattgggtgc tatatctaaa acaaactcat cattgcttgt aaaaaatctt tctttgtgta
     4381 tcaaatttcg cttgatatgc tcgttaaata gtaattttcc ctttaaaaaa gccctatttt
     4441 cttcgcaact tagataagat ctcatcaagc cttttttata tacgctatca aattcatcta
     4501 aaaacatagt gataaacact tcaaataaag gaattttaga actttgcaaa gatgaaattt
     4561 gtgatttttt aaaggggaag ttttttaagg tttttagcat atttatcaaa agatttttag
     4621 gattaaattt aaaatcttgt tcataaaaat cattattttt agaaatattg tctaattcat
     4681 agtatctttt tagtttttct ttatcgtgat ttgaagagct atcttctttt ttatagctat
     4741 ctaaattcgt gcattttggc aagatctcca aaaccccact tttagtctgt ataatgccga
     4801 cataattttt agcttttaag gtatttttat ttttaaagcc tagaagattt tcattatttt
     4861 ttgcaaagtc ttctagctct ttataaaacc cttcggcctt ttctttgaaa atttctttta
     4921 aatcttcttt agaaaaagct tggtgttcga tgatagaaaa agtattactt gttttcatta
     4981 tttatatatt ttt
//
LOCUS       DAZBIH010000103         4978 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.104, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000103 DAZBIH010000000
VERSION     DAZBIH010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4978)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4978)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4978
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.104"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..330
                     /locus_tag="ACHFOB_001498"
     CDS             <1..330
                     /locus_tag="ACHFOB_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HFN5800277.1"
                     /translation="DEQKLKLCELLNSNLSGFNLKKIKKPIIKKDELKLDLNYSKMYA
                     KLGLNTKDQQGLMAYLMNVFNELELVLCAAKIQTIRQRTRNIFIFQKNEKLEHSEQKL
                     VNLLISE"
     gene            335..2131
                     /gene="glmS"
                     /locus_tag="ACHFOB_001499"
     CDS             335..2131
                     /gene="glmS"
                     /locus_tag="ACHFOB_001499"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:1901137 - carbohydrate derivative
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HFN5800278.1"
                     /translation="MCGIVGYIGNNEKKQIILNGLKELEYRGYDSAGMAVMQEGELSF
                     FKAVGKLENLANKCTDFESQGYGFAIGHTRWATHGKPTEINAHPHLGQYSCVIHNGII
                     ENYKEIKDKLEKEGVSFLSQTDTEVIVQLFEFYARNLGVFEAWQKTIKELRGAFATLL
                     VTKKDPNHVYFAKNAAPLIIGKNANKEWYFSSGDAPLIGSCDEVMYLEDLSLGYASKD
                     ELVVYENDILKSLCFSKLSGDKAYAKKDGFRFFMEKEIYEQSRVMSEVLMGRIQGDEV
                     VFDELNNEDLSQADEITLCACGTSYHAAMASAYLFERIAKVKAKVEIASEFRYREAII
                     KKDSLFIVISQSGETADTLEALKIAKEQGAKTFAICNVDNSNIVRLAHLSLLTRAGIE
                     KGVASTKAFATQVLTLWMLAIFMAQKRNLNVSAEIKALLHTPNCVSVKQALHEKIHRL
                     SKRYLDGHGFFFIGRDVFYPLALEGALKLKELSYLHAEGYPAGEMKHGPIALADSKLY
                     TIALMPKHMLYEKTKSNVEELIARDSTVLSISPLEFDLSDDFIKTNEQDHYMCEFFEM
                     MVITQLLAMEISIRLGNDVDMPRNLAKSVTVE"
     gene            2134..>4978
                     /locus_tag="ACHFOB_001500"
     CDS             2134..>4978
                     /locus_tag="ACHFOB_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HFN5800279.1"
                     /translation="MKKFFCLTLVCKLFALSEFELHHIDKVHKLGYSGDTIIIGVADD
                     AFNQDHISLKDKILKSTYPTDTAGKQLIPDLKKSTHGSHVAGIAVGAKIGDSKPYGVA
                     YGAKFYGAGVFPNGSYTQIPDIYNFFKDVSIINNSWGINFYPYFNLKASNSGLVDCTQ
                     TNQGTSYNICNTPLEYVMKADKVANDMMRLSKDKGVLNVFAAGNEGILSPALHAILPS
                     YDESLRAWLAVGALDANEITLESDGTLIIKSQGLADFSNGFKGATNFSLVAAGVNINN
                     VDSSTNDKFTKKSGTSMAAPMVSGTAALVKQNFPFLDGKQIADILLSTANKNYKAPKF
                     TVKQVTDGTNQPKFLIVYISQDPPRIEDEIKRDLKQLYNGIQVQVNGQWIDYSDYIWD
                     NRDSAQSQKLNTSTISSINGVVRVEKEELFGQGILDAQKALKGLSILDANRLSDQDVL
                     KYEQEPNTAYYTINTAGYDAEFSNDISQRKWDESTHLSSAINKPTHLANLNIGLSKEG
                     EGILIISGQNTYEGATLIKQGELKLKGKVKNNAYVEQKAILSGNGIVGQNLNNKGIVR
                     PGNEDLNDLTVQGTYTQEGVDSKLQLDFGNYKNSKLIAKTYDIRSGNLEYIPLPKYYI
                     LNKPVKINLGDLEKSLSSFNHVLIQNTYALNFDFVLSDDLVSINKTLIKPNLKPNAYE
                     IPNTSLGNALRQLRSRADLSQTYQEFFASLDNGIDVKTKLNRIEGSGYLSTFSNHNQS
                     NLMQNNMLFTLHPLNINNFAQNNNILLASTYLPRIFSNEEYFWHLTPSYKYYKDKDFS
                     GQKTGANISLGENFSSGFLAYALSLSSAKFNFNNGSDLKSYNMDLLLNYNHDLDFIKI
                     LSGLGIGVGFNTLNRFVVERPIEGKYKTLQTSAQLGVTKDIILGQDFIFNPLMYFTHS
                     FFYQEDFKENKSPFAKNYESLKHHSINVNLGFNL"
BASE COUNT         1771 a          616 c          939 g         1652 t
ORIGIN      
        1 gatgagcaaa aactaaaact ttgcgagctt ttaaattcaa atctttctgg ttttaatttg
       61 aaaaaaatta aaaagccaat cattaaaaaa gatgagttaa aattagactt aaattattct
      121 aaaatgtatg ccaaattagg tcttaatact aaagatcagc agggtttaat ggcgtatttg
      181 atgaatgttt ttaatgaact tgaacttgtt ttatgtgcag caaaaattca aaccataaga
      241 caaaggacgc gtaatatttt tatttttcaa aagaatgaaa aattagaaca tagcgagcaa
      301 aagttagtta atttattaat aagtgagtaa aaaaatgtgt ggaatcgtag gctatatagg
      361 aaataatgaa aaaaaacaaa ttatactaaa tggacttaaa gaattagaat atcgtggcta
      421 tgatagtgcg ggtatggcag tgatgcaaga aggagagctt agttttttta aagctgtagg
      481 aaaacttgaa aatttggcga ataaatgcac ggattttgaa agtcaaggtt atggttttgc
      541 tataggtcat acaagatggg caactcatgg taagcctact gaaatcaacg cacatcctca
      601 tttaggacag tattcttgtg tgattcacaa tggtattata gaaaattata aagaaatcaa
      661 agataaactt gaaaaagaag gcgtgagttt tttaagtcaa accgatacag aagttattgt
      721 ccagcttttt gaattttatg caagaaattt gggagttttt gaagcttggc aaaaaaccat
      781 caaagaactt cgcggtgctt ttgctacttt gttggtaaca aaaaaagatc ccaatcatgt
      841 gtattttgca aaaaatgctg ctcctttgat tataggtaaa aatgcaaata aagaatggta
      901 tttttcttca ggtgatgcgc ctttgatagg aagttgtgat gaggtaatgt atcttgaaga
      961 tttaagcttg ggatacgcga gtaaagatga gcttgtcgtt tatgaaaatg atattttaaa
     1021 atcactttgt ttttctaagc tttcaggcga taaggcttat gcaaaaaaag acggctttcg
     1081 tttttttatg gaaaaagaaa tttatgaaca aagtcgcgtg atgagtgaag ttttaatggg
     1141 gcgtattcaa ggcgatgaag tcgtttttga tgagctaaac aatgaagatt taagtcaagc
     1201 agatgaaatc acgctttgtg cttgtggaac aagctatcat gctgcaatgg caagtgctta
     1261 tttgtttgaa agaattgcta aagttaaagc taaagtagaa attgcaagtg aatttcgata
     1321 ccgtgaagca attataaaaa aagattcttt atttatcgtt atttctcaaa gtggagaaac
     1381 agcagacact ttagaggctt taaagattgc aaaagagcag ggtgctaaga cttttgcaat
     1441 ttgcaatgtg gataattcta atatagtgcg tttagcacat ctaagtcttt taactcgtgc
     1501 gggcatagaa aaaggagttg cttcaactaa agcttttgct actcaggttt taacactttg
     1561 gatgcttgct atttttatgg cacaaaaaag aaatttaaat gtttctgctg aaattaaagc
     1621 acttttgcat actccaaatt gcgtgagtgt aaaacaggct ttacatgaaa aaattcatcg
     1681 tttatccaag cgttatttag atggacatgg ctttttcttt ataggcagag atgtgtttta
     1741 tcctttggct ttagaaggag ctttgaaact taaagaatta tcttatcttc acgctgaggg
     1801 ttatcctgca ggagagatga aacatggccc tattgctttg gctgattcta agctttatac
     1861 tatagcttta atgccaaagc acatgcttta tgaaaaaaca aaatcaaatg ttgaagagct
     1921 tattgctagg gattctacag tgcttagcat ttcaccttta gaatttgatt taagtgatga
     1981 ttttataaaa accaatgagc aagatcatta tatgtgtgaa ttttttgaaa tgatggtcat
     2041 tactcaactt ttggcgatgg aaatttccat aagacttggc aatgatgtgg atatgccaag
     2101 aaatttggct aaaagcgtaa cggtagaata gaaatgaaaa aatttttttg tttaacttta
     2161 gtttgtaaac tttttgcttt aagcgaattt gaacttcatc atattgataa agtacataag
     2221 ctagggtata gcggagatac tattataata ggtgtagccg atgatgcttt taatcaagat
     2281 catattagtt taaaggataa gattttaaag tctacttatc ctactgatac agctgggaaa
     2341 cagcttatac ctgatttgaa aaaatcaaca cacggaagtc atgtagcagg tatagctgtt
     2401 ggagcaaaga taggcgatag caaaccttat ggagtggctt atggggcaaa attttatgga
     2461 gctggggtgt ttccaaatgg ctcttacact caaattcctg atatttataa ttttttcaaa
     2521 gatgtgagta ttattaataa tagctggggt attaattttt atccttattt taatcttaag
     2581 gcttcaaatt ctggattagt agattgtact caaactaatc aagggacaag ctataatatc
     2641 tgtaatactc ctttggaata tgttatgaaa gcagataagg ttgctaatga tatgatgagg
     2701 cttagcaagg acaagggagt attaaatgta tttgctgctg gtaatgaagg aattcttagc
     2761 cctgctttgc atgcgatttt accaagttat gatgaatctt taagagcttg gttggctgtt
     2821 ggagctttgg atgcaaatga gattacttta gaatcagatg ggactttaat aattaaaagt
     2881 caaggtttgg ctgattttag taatggtttt aagggagcta cgaatttttc tttagttgct
     2941 gctggagtaa atattaataa tgttgattca agcactaatg ataagtttac aaaaaaaagt
     3001 ggaacttcta tggcagcacc tatggtaagt ggaacagcgg cactggtcaa gcaaaatttc
     3061 ccctttttgg atggtaagca aattgctgat atactgttaa gtacagcaaa taaaaattat
     3121 aaggctccaa aatttactgt taaacaagta accgatggaa caaatcaacc taaatttctt
     3181 attgtgtata tttcgcaaga tccacctagg atagaagatg aaataaaacg ggatttaaaa
     3241 cagctttaca atggaataca agttcaagtt aatggacaat ggattgatta tagtgattat
     3301 atttgggata atagagatag tgcgcagtca caaaaactta atacttctac tattagttct
     3361 attaatggag tagttagagt tgagaaagaa gaattatttg gacaaggaat tttagatgca
     3421 caaaaggcgt taaaaggact gagtatttta gatgcaaaca gactcagtga tcaggatgta
     3481 ttaaaatatg agcaagaacc taatacagct tattatacta taaacactgc aggttatgat
     3541 gctgaatttt ctaatgatat tagtcaaaga aaatgggatg aaagtactca tttatcaagt
     3601 gctattaata aacctacaca tttagctaat cttaacatag gattatctaa agaaggtgaa
     3661 ggtattttga ttatcagtgg tcaaaatact tatgagggtg caactttaat caaacaagga
     3721 gaattaaagc ttaaaggaaa agttaaaaat aatgcttatg tagaacaaaa agcaatacta
     3781 agcggtaatg gtattgtagg gcaaaattta aacaataaag gcatagttag acctggaaat
     3841 gaagatttga atgatttaac cgtgcaagga acttatactc aagaaggagt tgactctaaa
     3901 ttacaacttg attttggtaa ttataaaaat tctaaactga ttgcaaaaac ttatgatatt
     3961 aggagcggga atttagaata tattccttta cctaaatact atatcttaaa taagccagtg
     4021 aaaattaatt taggagattt ggaaaaaagt ttatcatctt ttaatcatgt tttgatacaa
     4081 aatacctatg ctttaaattt tgattttgtt ttaagtgatg atttagtgag tattaataaa
     4141 accttaataa aacctaattt aaagccaaat gcttacgaaa ttcctaatac aagcttggga
     4201 aatgctttaa gacaattgcg atctagggca gacttgagtc agacttatca ggaatttttt
     4261 gcttctttag ataatggaat agatgtaaag actaaattaa atagaataga aggttcaggg
     4321 tatttaagca cttttagtaa tcataatcaa tctaatttaa tgcaaaataa tatgttattt
     4381 acccttcatc ctcttaatat taataatttt gcacaaaaca ataatatctt acttgctagt
     4441 acttatttac ctagaatttt tagcaatgaa gaatattttt ggcatcttac tccaagttat
     4501 aaatactata aagataaaga tttttcaggt caaaaaacag gtgctaatat ctctttagga
     4561 gaaaatttct catcaggctt tttagcttat gctttatctc tttctagcgc taaatttaat
     4621 tttaataatg gtagtgattt gaagagttat aacatggatt tattgcttaa ttataaccat
     4681 gatttagatt ttataaaaat attaagtgga ttaggtatag gtgtaggatt taatactctt
     4741 aatcgttttg tagtagagcg gccaattgaa ggcaaatata aaacattgca aacttcagcc
     4801 cagcttggtg taactaaaga tattatttta ggtcaagatt ttatttttaa tcctttaatg
     4861 tattttacac atagtttttt ttatcaagaa gattttaaag aaaataaaag tccttttgct
     4921 aaaaattatg aaagtttaaa acatcatagc ataaatgtaa atttaggttt taatcttg
//
LOCUS       DAZBIH010000104         4931 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.105, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000104 DAZBIH010000000
VERSION     DAZBIH010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4931
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.105"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(282..1472)
                     /locus_tag="ACHFOB_001501"
     CDS             complement(282..1472)
                     /locus_tag="ACHFOB_001501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030151 - molybdenum ion binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HFN5800280.1"
                     /translation="MLMSYEESLKILHSHIKTYEKIEKIALTECLGRILAQDIKAPKN
                     QPEFPTSAMDGYAIKFEDQDKPLKILGLTPAGTMPQFSVQNGTCVKTFTGSLMSEGSD
                     TLVPVENVRVENDTLFIEKKVPQAFAVRAVGENYKKDEILLKKGTKLNYSEIALLAEL
                     GFFHISVFIKPIVGVLSSGSEIKDLGEALENPAQIRSSNHIAIANLAKNLNCDTRVFP
                     LLKDDEKATFSTLESALQSCDILVTTGGVSMGDFDFLKKAIKEYEIIIDKADIKPGRH
                     IKIAKANEKFIIALPGFPYSAMVMFNLYAREILNSWLLQPKDYICKAFLQGSYKKKTP
                     YLEFVACNVEFKNGRILANLEGKKEGSSAIINNLNNKAALMVVLKECEMLENESLVDI
                     IFMP"
     gene            complement(1476..1922)
                     /locus_tag="ACHFOB_001502"
     CDS             complement(1476..1922)
                     /locus_tag="ACHFOB_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HFN5800281.1"
                     /translation="MEHFTLYQGSLDIPKIYSQWYEFAKDKNCGALLTFCGIVREEGG
                     IEALSFDIYEPLLKKWFDEWQKRVDFDGISLLFAHSIGDVAVHESSYFAGILSKQRKL
                     GLKLLNEFVEDFKASAPIWKYDVINKERIYAKERSTKLCGAGLLKG"
     gene            complement(1923..2144)
                     /locus_tag="ACHFOB_001503"
     CDS             complement(1923..2144)
                     /locus_tag="ACHFOB_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HFN5800282.1"
                     /translation="MVKVEFLGPINKENLELEVKNLKELKEILQKDESLKEWLELCAV
                     SLNDEIIFDENTKLKDGDKIALLPPVCGG"
     gene            complement(2146..3687)
                     /gene="cueO"
                     /locus_tag="ACHFOB_001504"
     CDS             complement(2146..3687)
                     /gene="cueO"
                     /locus_tag="ACHFOB_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase CueO"
                     /protein_id="HFN5800283.1"
                     /translation="MNRRNFLKFNALTLASMGVAYANPMHDMHSMHKNHSINHDLDTS
                     FINFAPKNLKLLDPKQFPQGEILKASPLLKNESKEKNIFRATLEIKENHIELIKGKKT
                     LFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTMHWHGIPVPPDQDGSPHDPILAG
                     EERIYRFEIPQDSAGTYWYHPHPHYTTSKQVFMGLAGAFVIKAKKDALSHLKEKDLMI
                     SDLRLDENAQIPNNNLNDWLNGREGEFVLINGQFKPKIKLATNERIRIYNATAARYLN
                     LRIQGAKFILVGTDGGLIEKAIYKEELFLSPASRVEVLIDAPKDGNFKLESAYYDRDK
                     MMVKEEPNTLFLANINLKKENVELPKNLKIFKPSEEPKEFKEIIMSEDHMQMHGMMGK
                     SESELKIALASMFLINGKSYDLKRIDLSSKLGVVEDWIVINKSHMDHPFHIHGTQFEL
                     ISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQDFKGLRMYHCHILEHEDLGMMGN
                     LEVKE"
     gene            3811..>4931
                     /gene="nspC"
                     /locus_tag="ACHFOB_001505"
     CDS             3811..>4931
                     /gene="nspC"
                     /locus_tag="ACHFOB_001505"
                     /EC_number="4.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0045312 - nor-spermidine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxynorspermidine decarboxylase"
                     /protein_id="HFN5800284.1"
                     /translation="MFYEKIQTPAYILEEDKLRKNCELLASVGEKSGAKVLLALKGFA
                     FSGAMKIVGEYLKGCTCSGLWEAKFAKEYMDKEIHTYSPAFKEDEIGEIASLSHHIVF
                     NSLAQFHKFQAKTQKKSLGLRCNVEFSLAPKELYNPCGRYSRLGIRAKDFENVDLNAI
                     EGLHFHALCEESADALEAVLKVFEEKFGKWIGQMKWVNFGGGHHITKKGYDVEKLIAL
                     CKNFSDKYGVQVYLEPGEAVGWQTGNLVASVVDIIENEKQIAILDTSSEAHMPDTIIM
                     PYTSEVLNARILATRENEKISDLKENEFAYLLTGNTCLAGDVMGEYAFDKKLKIGDKI
                     VFLDQIHYTIVKNTTFNGVRLPNLMLLNAKNELQMIREFS"
BASE COUNT         1567 a          791 c          784 g         1789 t
ORIGIN      
        1 caaaataaat tagtaaaatt ttaattaaaa ttaataattt agataagagt atggatttta
       61 aataattacg aatagtattt tataattttt aaagtattat cgggagttgt tacaagaata
      121 ttgccatttt ctataaatgt atatgtcaat aaattaatat tattctaagg tttatagata
      181 agattaatta catattatat ttttaaataa aataattata gttgtttaaa aaagtaattt
      241 ttattacaag aatttaaaaa agagaaatca tccccgccct tttaaggcat aaagataata
      301 tccactaaac tttcattttc taacatttca cattctttta gtactaccat aagggcagct
      361 ttattgttaa gattatttat aatcgcacta gagccttctt tcttgccttc aagattggct
      421 aaaatgcgtc catttttaaa ttccacatta caagcgacaa attccaaata aggtgttttt
      481 ttcttgtagc ttccttgtaa aaaggctttg caaatatagt ctttaggctg aagtaaccaa
      541 gagtttaaaa tttctcttgc gtaaagatta aacattacca tagccgagta aggaaaacct
      601 ggtaaggcga tgatgaattt ttcattagcc ttggctattt tgatatgtct acctggtttt
      661 atgtcggctt tatcgatgat gatttcgtat tctttgatgg ctttttttaa aaagtcaaaa
      721 tcccccatag aaaccccgcc cgttgtaact aaaatatcac aactttgcaa agcactttca
      781 agggtagaaa aagtggcttt ttcatcatct tttaaaagag gaaaaaccct tgtatcgcaa
      841 tttagatttt tagctaaatt agctatggcg atatgatttg aagagcggat ttgagcagga
      901 ttttccaagg cttctcctag atcttttatc tcacttccac tacttaaaac ccctacaata
      961 ggctttataa acacactaat gtgaaaaaat ccaagttcag ccaaaagagc tatctcgcta
     1021 taatttaact ttgtgccttt tttgagtaaa atttcatctt ttttatagtt ttctcctacc
     1081 gcacgcacgg caaaagcttg gggaactttt ttttctataa aaagagtatc attttctacg
     1141 cgtacatttt caacagggac taaagtatcg cttccctcgc tcatgagtga gcccgtaaag
     1201 gtttttacac aagtgccatt ttgcacgcta aattgtggca tagtgcctgc aggtgtgagg
     1261 cctaaaattt ttaaaggctt atcttgatct tcaaatttga tcgcataacc atccatagcc
     1321 gaggttggaa attcaggctg atttttaggg gcttttatgt cttgagctaa aatgcgtcct
     1381 aaacactctg taagggctat tttttcaatc ttttcatagg ttttaatatg agagtgtaaa
     1441 atttttaaac tttcttcata agacattaac attttttatc cttttaaaag tcctgcaccg
     1501 caaagtttgg ttgatctttc tttagcataa attctttctt tgtttatcac atcatacttc
     1561 caaataggtg cgcttgcttt aaaatcttca acaaattcat taagaagttt aagtcctaat
     1621 tttctttgtt tgcttaaaat tcctgcaaaa taagagcttt catgaaccgc cacatcgcct
     1681 atagagtgag caaaaagcaa gctaatacca tcaaaatcta ctcttttttg ccactcatca
     1741 aaccattttt ttaaaagcgg ttcataaata tcaaaactaa gtgcctcaat gcctccttct
     1801 tcacgcacaa taccacaaaa agtcagcaaa gcaccgcagt ttttatcctt ggcaaattca
     1861 taccattggc tataaatttt aggaatatct aaagaacctt gataaagtgt aaaatgttcc
     1921 atttaacccc cacaaactgg cggtaaaagt gctattttat caccatcttt taacttagtg
     1981 ttttcatcaa aaatgatttc atcgtttaaa gatacggcac aaagttctag ccattctttt
     2041 aaactctcat ctttttgcaa aatttctttt aattctttta aattttttac ctcaagctct
     2101 aaattttctt tatttatggg gcctaaaaat tccactttta ccattttatt cctttacttc
     2161 taaatttccc atcattccta aatcttcatg ttctaaaata tggcaatgat acattctaag
     2221 tcctttaaaa tcttgtttca ttctaagtct taattcttca ttaggacgca catttatagt
     2281 atctcttaag gctctaaatt cggctttttg aactttgcca ttgagttttg atgagatgag
     2341 ttcaaattgc gtgccatgta tatggaaagg atgatccatg tgagatttat ttatcactat
     2401 ccagtcttca actactccaa gtttggagct taaatcaatg cgttttaaat catagctttt
     2461 gccattgatt aaaaacatag acgcaagagc gatttttaat tcgctttcac tttttcccat
     2521 cataccatgc atttgcatat gatcttcact catgattatt tctttaaatt ccttaggttc
     2581 ttctgaaggt ttgaaaattt ttaaattttt tggaagttct acattttctt tttttaggtt
     2641 aatattggct agaaataggg tattaggttc ttcttttacc atcattttat ccctatcata
     2701 ataagcactt tctagcttaa aattcccatc ttttggagcg tcgattaaaa cttctacgcg
     2761 agaagcagga cttaagaaaa gttcttcttt ataaatagct ttttctataa gtccaccatc
     2821 agtaccaaca agtataaact tagctccttg tatgcgtaaa tttaaatatc ttgccgcagt
     2881 agcattataa atgcgtatgc gttcgtttgt ggcgagtttg attttaggtt taaattgtcc
     2941 attaatgagt acaaattctc cttctctacc atttagccaa tcatttaggt tgttgtttgg
     3001 aatttgagcg ttttcatcaa gacgcaaatc gctaatcatc aaatcttttt cttttaaatg
     3061 acttaaagca tctttttttg ctttgatcac aaaagcccct gctaaaccca taaaaacttg
     3121 tttagaagtg gtataatgag ggtgtggatg ataccagtaa gttcctgcgc tatcttgagg
     3181 aatttcaaaa cgatatattc tttcttctcc tgctaagata ggatcatgtg ggcttccatc
     3241 ttgatcaggt ggcacaggaa tgccatgcca atgcatagtt gtagcttcct tgagtttgtt
     3301 tttgactaaa atttcaagtt tatctccttc aaaaacttct atttttggag caggcacgag
     3361 gccattgtaa gtataaaata aggttttttt acctttgata agctctatat gattttcttt
     3421 gatttctagg gtagcacgaa aaatattttt ttctttactt tcatttttga gtaaaggcga
     3481 ggcttttaaa atttctcctt gggggaattg ttttggatct aaaagtttta aattttttgg
     3541 agcaaagttt ataaaagaag tatctaagtc atgatttata gaatgatttt tatgcatgga
     3601 gtgcatatcg tgcataggat ttgcataggc tacacccata cttgctagag taagtgcatt
     3661 aaattttaaa aaatttcttc tattcattag tttttccttt tacttgattt tttgtattat
     3721 agtcattatt tttttagttt tagtaaatat ttattttgaa aatttggttt aattttgtta
     3781 tgattttagc aatttaatca aggaaaaata atgttttatg aaaaaattca aactccagct
     3841 tatattttag aagaagataa gttaagaaaa aattgtgagc ttttagcgag tgttggcgaa
     3901 aagagtggtg ctaaagtgct tttagcttta aaaggttttg ctttttcagg agcgatgaaa
     3961 attgttggag aatacctaaa aggttgtact tgtagcggac tttgggaagc aaaatttgct
     4021 aaagaataca tggataaaga aattcatact tattcacctg cttttaaaga agatgaaata
     4081 ggtgaaatag ccagtttatc tcatcatata gtgtttaatt ctttagctca atttcataaa
     4141 tttcaagcta aaacacaaaa aaaatcctta ggtcttcgtt gtaatgttga attttctcta
     4201 gccccaaaag aactttacaa tccttgtgga agatactcaa gacttggaat tcgtgctaaa
     4261 gattttgaaa atgtggattt aaatgctata gaaggacttc attttcacgc actttgtgaa
     4321 gaaagtgctg acgctttaga agctgtttta aaggtctttg aagagaaatt tggtaaatgg
     4381 atagggcaaa tgaaatgggt gaattttgga ggaggacatc acatcaccaa aaaaggctat
     4441 gatgttgaaa aacttattgc tttgtgtaaa aatttcagtg ataaatacgg tgtgcaagtt
     4501 tatcttgaac caggcgaagc ggtgggttgg caaacaggaa atttggtggc tagtgtagta
     4561 gatatcatag aaaatgaaaa acaaattgct attttagata cttcaagcga agcacatatg
     4621 ccagatacta tcatcatgcc ttatacaagt gaagttttaa atgctagaat tttagccaca
     4681 agagaaaatg aaaaaatttc agacttaaaa gaaaacgaat ttgcctattt acttactgga
     4741 aatacttgtt tagcgggtga tgtaatggga gaatacgcct ttgataaaaa gcttaaaatc
     4801 ggcgataaaa ttgttttttt agatcaaatt cattacacca ttgtgaaaaa cacaactttt
     4861 aatggtgtaa gacttccaaa tctcatgctt ttaaatgcaa aaaatgaact tcaaatgata
     4921 agagaatttt c
//
LOCUS       DAZBIH010000105         4925 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.106, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000105 DAZBIH010000000
VERSION     DAZBIH010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4925
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.106"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(28..1992)
                     /locus_tag="ACHFOB_001506"
     CDS             complement(28..1992)
                     /locus_tag="ACHFOB_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN5800285.1"
                     /translation="MKFNLNQKELFNKNIEALDNIPLKESLKEIKSSKFKLILGKDNL
                     DINLQNTSDNTFLYENVIDELNTMLNTYNDKYLLYPVLYFYGFGNGILFKALLQNKNH
                     QHIVVFEKDIEIIWTMFHILDFSNELQKNNLIIINTNILSEFDLLNFYKKANSIFLQF
                     SRIYFLELISNYYERYNEEILKLNDTILSTIKISIIQYGNDSIDNLMGIKHFIYNLSK
                     LLTHPHSEIFLKKRYKLSDTAIIVSTGPSLTKQLPLLKQYANKATIFCADSAYPILAK
                     HNIKPDYVCMLERDDIVSKCFDNDFKEFDKGILFILASVVHKEVIEFLERNNREYMLV
                     PRAYDFFYYLNLAKYFQPIDGMVSVAHMNYWLAKFLSHKNIIFIGQDLAYSKDQSSHA
                     KDFIHEKLHEGHFQKDENLFTSIAYGGKGEVESSYFWKLFREIFEKWISHDNNFINIY
                     NCTEGGARIKGTIEKPFLWACENLLGKDLNKPFPKLNPLNINKQNELMLKAYNKIYKS
                     IYHCKDFNKKLLQEYNEIKELYLTLENLQIEESKELLNFIIQKIDTIKYQIDDAKNMQ
                     DLYEILGPLLVQFELNLARIYVLNPKTPEDSFNKSLIWIKEHLEWIEMIYGHIQAQEN
                     ALFENIIPLEQKLKERKMQKYLRRIKNANK"
     gene            complement(2013..3863)
                     /locus_tag="ACHFOB_001507"
     CDS             complement(2013..3863)
                     /locus_tag="ACHFOB_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN5800286.1"
                     /translation="MNKDLFLKNTQALFEVDQILAYKLRALEKNDFKILQNENGINFI
                     KDDIMLYKNPEQELLENLTLFQNKYKKYPVLFFYGFGNGMFYKTLCENKNHKHIIVFE
                     DELEILALALHLFDFSKELKNEKLILFHTPNITTAQLTTLFMYEHIQKSVKIFNLFIH
                     SDFYLKFYSHQIQELNKKLIENIRFIVLAKGNDPYDSIIGIKHMLNNLPKLLNHGVFQ
                     NFLKARKQKVKNAIIVSTGPSLTKQLPLLKKYANKATIFCADSAYPILAKHNIKPDYV
                     CMLERDDIVSKCFDNDFKEFDQGILFIISSVVHQEVIDFLEKNSRKYILVHRPLHFAV
                     SLNLKEFGYIGVGASVANMAYELAASLRHENIIFIGQDLAYAKDGSSHPREHIYGNQG
                     EKLRGEIYTLAYGGEKQVRTQLTWNLFRQAFEKDIFWAKEKLKINTYNCTEGGARIEG
                     AIEKPFQEVCETLLKENLKKPFDKPKILEKNKIKNKFLQTQKLLIKNVKQSEEFIKKC
                     QNELKKLDFELSKSQLNSQTLIKIKKNLLFFFNEFKRLKLFNELTQAIYYHNECEIMY
                     YEVLNDLEQDKKIEDFLTNQKKWWLQSFEYLNTQNQIIKETLKKYKNDDI"
     gene            complement(3860..4891)
                     /gene="pseI"
                     /locus_tag="ACHFOB_001508"
     CDS             complement(3860..4891)
                     /gene="pseI"
                     /locus_tag="ACHFOB_001508"
                     /EC_number="2.5.1.97"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid synthase"
                     /protein_id="HFN5800287.1"
                     /translation="MQIGNFNTDKKVFIIAELSANHAGSLEMALKSIKAAKKAGADAI
                     KIQTYTPDSLTLNSDKEDFIIKGGLWDKRKLYELYESAKTPYEWHSQIFETAQNEGIL
                     CFSSPFAKEDIEFLKRFDPIAYKIASFEANDENFVRLIAKEKKPTIVSTGIATEEELF
                     KICEIFKEEKNPDLIFLKCTSAYPTAIEDMNLKGIVSLKEKFNVEVGLSDHSFGFLAP
                     VMAVALGARVIEKHFMLDKSIESEDSKFSLDFDEFKAMVDAVRQAESALGDGKLDLDE
                     KALKNRVFARSLYASKDIKKGEIFSEENVKSVRPSFGLHPKFYQELLGKKASKDIEFG
                     DALKESDFR"
BASE COUNT         1584 a          718 c          629 g         1994 t
ORIGIN      
        1 atagcttcta aatttttttt aaaaatttca tttgtttgca ttttttatcc ttcttaggta
       61 tttttgcatt tttctttctt taagtttttg ctccaatggg ataatatttt caaataaggc
      121 attttcttgt gcttgtatat gcccataaat catttctatc cattctaagt gttcttttat
      181 ccaaattaac gatttattga aactatcttc tggtgttttg ggatttaaaa cataaattct
      241 cgctaaattg agttcaaact gaaccaataa tggtcctaaa atttcatata aatcttgcat
      301 atttttagca tcatcaattt ggtatttaat tgtatcaatt ttttgtataa taaaatttaa
      361 aagctcttta ctttcttcta tttgtaaatt ttctaaagtt aaatacagtt ctttgatttc
      421 attatattct tgtagtaact ttttattaaa atctttgcaa tgataaatgc ttttataaat
      481 tttattatat gcttttaaca ttaactcatt ttgcttattt atattcaaag ggtttaattt
      541 agggaaaggt ttatttaaat ctttacccag taaattctca caagcccaaa gaaaaggttt
      601 ttctatcgtt ccttttatcc ttgctccacc ttcggtgcaa ttataaatat tgataaaatt
      661 attatcatgg cttatccact tttcaaaaat ttctctaaaa agcttccaaa aatacgagga
      721 ttctacctcg ccttttccac cgtaagcgat gcttgtgaaa agattttcat ctttttgaaa
      781 atgtccttcg tgtagttttt cgtgtataaa gtctttagca tgagaggact gatctttgct
      841 gtaagctaaa tcttgtccta taaaaattat atttttatga gataagaatt ttgctaacca
      901 gtaattcata tgtgcaacgc ttaccattcc atcaataggt tgaaaatatt ttgctagatt
      961 aagatagtaa aaaaaatcat aagccctagg caccaacata tactccctat tatttctttc
     1021 aagaaattca ataacttctt tatgaactac cgaagctagg ataaacaaaa ttcctttatc
     1081 aaattcttta aaatcgttgt caaaacactt agaaactata tcatctcttt ctaacatgca
     1141 aacataatca ggcttaatat tgtgttttgc taaaatagga taagcgctat ctgcacaaaa
     1201 aatcgtagct ttatttgcgt attgttttaa taaaggaagt tgtttagtaa gacttggtcc
     1261 tgtagaaaca atgatggctg tatcgcttaa tttatatctt tttttgagaa aaatttcact
     1321 atgtggatga gtaagtaatt ttgaaagatt ataaataaaa tgttttattc ccatcaaatt
     1381 atctatagaa tcattgccgt attgtatgat agatattttt attgttgata aaatggtatc
     1441 attaagcttt aaaatttctt cgttatatct ttcataataa ttgcttataa gttctaaaaa
     1501 ataaattcta gaaaattgta aaaaaatact attagctttt ttgtagaaat ttaatagatc
     1561 aaattcgctt aaaatattgg tattgataat aattaaattg tttttttgta attcatttga
     1621 aaaatctaag atatgaaaca ttgtccaaat gatttctata tctttttcaa aaacaacaat
     1681 atgctgatga tttttatttt gcaataaagc tttaaataaa attccatttc caaaaccata
     1741 aaagtacaat acaggataaa gtaggtattt atcattgtaa gtatttaaca tagtgtttaa
     1801 ttcatcaata acattttcat aaagaaaagt attatcactt gtattttgta gatttatatc
     1861 tagattatct ttacctaaga taagtttaaa tttactagat ttgatttctt ttaaactttc
     1921 ttttaaagga atattatcta aagcttcaat atttttatta aagagctctt tttgatttaa
     1981 attaaatttc atatttctct ctctgctttt tatcaaatat cgtcattttt gtattttttt
     2041 aaagtttctt ttatgatttg attttgagta tttaagtatt caaaactttg taaccaccat
     2101 tttttttgat tggttaaaaa atcttcaatt tttttatctt gttctaaatc atttaaaact
     2161 tcataataca taatttcgca ttcattatga taatatatag cttgagtgag ttcattgaaa
     2221 agttttaacc ttttaaattc gttaaaaaaa aataaaagat tttttttaat ttttattaga
     2281 gtttgtgaat taagttgaga tttgctaagc tcaaaatcaa gtttttttag ttcattttga
     2341 cattttttta taaattcttc actttgtttg acatttttaa ttaatagttt ttgagtttgt
     2401 aaaaatttat tttttatctt atttttttcc aaaattttag gcttatcaaa tggtttttta
     2461 agattttcct taagtaaggt ttcgcatact tcttgaaaag gtttttctat agctccttct
     2521 atcctagcac ctccttcggt gcaattataa gtgttgattt ttaatttttc ttttgcccaa
     2581 aaaatatctt tttcaaatgc ttgtcggaat aagttccaag taagttgagt tcttacttgt
     2641 ttttctcctc cataagcaag tgtatagatt tcaccgcgta atttttcccc ttggtttcca
     2701 tagatatgct ctcttggatg agaacttcca tcttttgcat aagctaagtc ttgtcctatg
     2761 aaaatgatat tttcatgtct taagcttgca gctagttcgt aagccatatt ggcaacactc
     2821 gctccaaccc caatataacc aaattcttta agatttaaag atacagcaaa atgcaaaggg
     2881 cgatgtacta gtatatattt tctagagttc ttttcaagaa aatcaataac ttcttgatgt
     2941 accacagagc ttatgataaa taaaattcct tgatcaaatt ctttaaaatc attatcaaaa
     3001 cacttagaaa ctatatcatc tctttctaac atacaaacat aatcaggttt tatattatgt
     3061 tttgctaaaa taggataagc actatcagca caaaaaatag tggctttgtt tgcatacttt
     3121 tttagtaaag gcaattgttt ggttaagcta ggtcctgttg aaacaatgat ggcattttta
     3181 actttttgtt ttcttgcttt taggaaattt tgaaaaacac catggtttaa aagtttagga
     3241 agattattaa gcatgtgttt gataccgatg atagaatcat aaggatcatt tcctttagct
     3301 aaaacaataa aacgaatatt ttcaataagt tttttattaa gttcttgtat ctgatgagaa
     3361 tagaatttaa gataaaaatc actatgtata aaaagattaa aaattttcac acttttttgt
     3421 atgtgttcgt acataaaaag tgtcgtaagt tgtgcagtgg tgatatttgg agtatgaaaa
     3481 agtattaatt tttcattttt taattctttg ctaaaatcaa aaagatgtaa agctagagct
     3541 aaaatttcta actcatcttc aaaaactatg atgtgtttat ggtttttatt ttcacataag
     3601 gttttataaa acataccatt tccaaaaccg tagaaaaata atacaggata ttttttatac
     3661 ttattttgaa aaagagttaa attttctaaa agttcttgtt cgggattttt ataaagcatg
     3721 atatcatctt ttataaaatt gattccattt tcattttgca gtattttaaa atcatttttt
     3781 tctaaagcac gtaatttata cgctaaaatt tgatcaactt caaacaaagc ttgagtgttt
     3841 tttaaaaaaa gatctttatt catctaaaat cactttcttt taaagcatcg ccaaattcta
     3901 tatctttact agcttttttt cctaaaagtt cttggtagaa tttaggatgt agcccaaaag
     3961 aaggacgcac tgattttaca ttttcttcgc tgaaaatttc accttttttg atatccttac
     4021 ttgcatataa acttcttgca aaaacacggt ttttaagtgc cttttcatct aagtctaact
     4081 tgccatcgcc taaagcactt tcagcttgtc taactgcatc taccatagcc ttaaattcat
     4141 caaaatcaag actaaattta ctgtcttcac tttctatgct tttatctaac ataaagtgct
     4201 tttctatcac tctagctcca agtgctactg ccataacagg ggctaaaaaa ccaaagctgt
     4261 gatcgcttag tcccacttca acattaaatt tttcttttaa acttactatg ccttttaaat
     4321 tcatatcttc tatggcagta ggataagccg aagtgcattt taaaaagatt aaatcaggat
     4381 ttttttcttc tttaaaaatt tcacagattt taaaaagttc ttcttctgta gcaatgcccg
     4441 ttgaaacgat agtaggtttt ttttctttgg cgattaaacg cacgaaattt tcatcattgg
     4501 cttcaaaaga agcgatttta taggctatag gatcaaagcg tttaagaaat tctatatctt
     4561 ctttagcaaa gggacttgaa aaacaaagta tgccttcatt ttgtgcggtt tcaaagattt
     4621 gagaatgcca ttcataaggg gtttttgcac tttcataaag ctcataaagt tttcttttgt
     4681 cccaaagtcc tcctttgatg ataaaatctt ctttatcgct atttagtgtg aggctatctg
     4741 gagtgtaagt ttggattttt atcgcatcag cacctgcttt tttggctgct tttatgcttt
     4801 taagtgccat ttcaagactt cctgcgtgat ttgcactaag ttctgctatg ataaaaacct
     4861 ttttatcggt gttaaaattt cctatttgca tacttttctt tctttggtaa atttcctgac
     4921 taaaa
//
LOCUS       DAZBIH010000106         4897 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.107, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000106 DAZBIH010000000
VERSION     DAZBIH010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4897
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.107"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            89..538
                     /locus_tag="ACHFOB_001509"
     CDS             89..538
                     /locus_tag="ACHFOB_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA starvation/stationary phase protection
                     protein"
                     /protein_id="HFN5800288.1"
                     /translation="MSVTKQLLQMQADAHHLWVKFHNYHWNVKGLQFFSIHEYTEKAY
                     EEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPKVAKDCFTPLEVIELIKQDYEYL
                     LAEFKKLNEAAEKESDTTTAAFAQENIAKYEKSLWMIGATLQGACKM"
     gene            603..1640
                     /locus_tag="ACHFOB_001510"
     CDS             603..1640
                     /locus_tag="ACHFOB_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5800289.1"
                     /translation="MKVLNFFYENHPKFEVSYERKNQISKPNIIIKGPRFCGKKTLIF
                     NFLSQFKASEILFLDLYDTRFEKQSLERLADFLNENLQIKILCLYNLDFIPNLEKIKI
                     PIILSTNIKDLNINGFEELELDYFDFEEFISVSKKNLPINNLVGLFLQSGRSKFGEKN
                     ILLRQSFTLLELEILKYLALNLGQQISISKIFIELKKRLKTSKDSVYQAIKKLENTYV
                     IYTLKHDEKKLQKIYFKDFGLRNNLCISKDFSHLFENLVLSELFKFKEEFFYNKYFNF
                     YSQISKIAYISSPTLDIDLIKLRAKKILPKALELGIFHVIFITLSSEDNFFEQGVKFE
                     VISFDKFSLGF"
     gene            complement(1637..2368)
                     /locus_tag="ACHFOB_001511"
     CDS             complement(1637..2368)
                     /locus_tag="ACHFOB_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004040 - amidase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HFN5800290.1"
                     /translation="MKPIIIFLSLFLIPLFADDLKSGFGEEYYKLDIDQKRQIFFIKM
                     NEMFDQSFKKIEQERAFIEAFFKDAYKTGFRTSNQINLEKLITIKNKYRIENLYDFAE
                     YKKRIQKIPKSMGIAQALVESATGTSRFAREANNLFGEWTWGEKGLIPDLRHPDKKHK
                     IKIFDSLQDSVDSYVLNLNRHFAYEKFRDARAKFESEGKEITGLEAIKTLDSYSERKG
                     YYINLITKIIKRYNLEKYDTNSNNT"
     gene            complement(2343..3092)
                     /gene="dapF"
                     /locus_tag="ACHFOB_001512"
     CDS             complement(2343..3092)
                     /gene="dapF"
                     /locus_tag="ACHFOB_001512"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002855997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008837 - diaminopimelate epimerase
                     activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HFN5800291.1"
                     /translation="MKFYKYCASGNDFVITNADRKEDRSALAKELCNRYEGIGADGFI
                     VILPHEKYDFEWEFYNNDGSRAAMCGNGSRAAAHFAHHINKINPNMSFLTGAGVIKAK
                     VNQDKVEVSLGKIKSVQNTFEELGKTWQLCNTGVPHLVHFCQNLDEFDTMLCQKMRQK
                     YNANVNFVKILDENHLKVRTYERGVEDETLACGTGMGACFYLAFLNKKVQNKVKITPK
                     SGEEVGFAYKNEELFFEGKVKYCFEANYNFS"
     gene            complement(3089..3694)
                     /gene="coaE"
                     /locus_tag="ACHFOB_001513"
     CDS             complement(3089..3694)
                     /gene="coaE"
                     /locus_tag="ACHFOB_001513"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344902.1"
                     /note="Dephospho-CoA kinase (CoaE) performs the final step
                     in coenzyme A biosynthesis; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004140 - dephospho-CoA kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HFN5800292.1"
                     /translation="MKNAFFVTASIACGKSTFIEIANSLGFKSISADKIAHEILDENA
                     LELEKIFSPFSLKNLLTKEKKIDRKILGEIVFNNKEAKKILENFTHPKIRAKILEQMQ
                     ILDKENKAFFVEIPLFFESGAYENLGKVIVIYTPKELSLKRIMQRDKLSLEAAKARLD
                     SQIDIEEKLKKADFIIKNTNSYADFRQECVKVIQEISKGKM"
     gene            3755..4744
                     /gene="purM"
                     /locus_tag="ACHFOB_001514"
     CDS             3755..4744
                     /gene="purM"
                     /locus_tag="ACHFOB_001514"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004641 -
                     phosphoribosylformylglycinamidine cyclo-ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HFN5800293.1"
                     /translation="MKISYEDAGVSIDNGNAFVEAIKPLVKETFNDNVVGGIGSFAGA
                     FRMPSGFKKPVILGATDGVGTKLRLAIDAKKYDTIGQDLVAMCVNDLICNFATPLFFL
                     DYYATAKLEVEVAKAVVSGIAKGCKMANCALIGGETAEMPGMYAKDDFDLAGFAVGMA
                     EEDEIDRSKFVKNGDILLALPSSGLHSNGYSLARKVLFESLKLKFDDKIEGKNLIDIL
                     LEPTRIYVRDFLTLKPYISALAHITGGGLVENLPRVLPRGMGATIRKHHLKTPEIFYT
                     IGQAVEESEMYRSFNMGVGLVMVVDPSNVSKVLENSDAFIIGEICINEGIVLE"
BASE COUNT         1653 a          686 c          745 g         1813 t
ORIGIN      
        1 attataataa aaatttttaa ttaataataa taattattat ttaagaattt tatgttataa
       61 ttttaaaaat taaaaaaagg agtcaatcat gtcagttaca aaacaattat tacaaatgca
      121 agcagatgct catcatctat gggttaaatt tcataattat cactggaatg taaaaggttt
      181 gcaatttttt tctatacacg aatacacaga aaaagcttat gaagaaatgg cagaactttt
      241 tgatagttgt gctgaaagag ttttacaact tggcgaaaaa gctatcactt gccaaaaagt
      301 tttaatggaa aatgcaaaaa gtccaaaagt tgcaaaagat tgctttactc cgcttgaagt
      361 catagaactg atcaaacaag attatgaata tcttttagca gaatttaaaa aactcaatga
      421 agcagcagaa aaagaaagtg ataccacaac agctgctttt gcgcaagaaa atatcgcaaa
      481 atatgaaaaa agtctttgga tgataggcgc tactttacag ggtgcttgca aaatgtaatt
      541 taaggggctt tatgccccaa ttatacaaac taggttataa tatccttttt taaaggataa
      601 aattgaaagt acttaatttt ttttatgaaa accaccctaa atttgaagta agttatgaaa
      661 gaaaaaatca aatttcaaaa ccaaatatta tcataaaagg cccacgattt tgtggtaaaa
      721 aaacacttat ttttaatttt ttatctcaat ttaaagcaag tgaaattttg tttttagatt
      781 tatatgatac acgctttgaa aaacaaagtt tagaaagact tgctgatttt ctgaatgaaa
      841 atttacaaat taaaattctt tgcctttata atttggattt tatccctaat ttagaaaaaa
      901 ttaaaattcc tatcatctta agtacaaata taaaagattt aaatataaat gggtttgaag
      961 agcttgaact tgattatttt gattttgaag aatttattag tgtaagtaag aaaaatttac
     1021 ctataaataa tttagtgggt ctttttttgc aaagtggacg cagtaaattt ggagaaaaaa
     1081 acatacttct aagacaaagc ttcactcttt tagaattaga aattttaaag tatttagctt
     1141 taaatttggg tcagcaaatc agtatttcta agatatttat agaactcaaa aaaagattaa
     1201 aaacttcaaa agatagtgtt tatcaagcta taaaaaaatt agaaaatact tatgtgatct
     1261 atactttaaa acatgatgaa aaaaaacttc aaaagattta ttttaaagat tttggcctaa
     1321 gaaataatct ttgtatttca aaggattttt cacatttatt tgaaaattta gttttaagtg
     1381 agttgtttaa atttaaagaa gaattttttt ataacaaata ctttaacttt tatagccaaa
     1441 tatctaaaat tgcttatatt tcaagtccaa ctttagatat tgatttgatc aagctacgtg
     1501 ctaagaaaat tttaccaaag gctttagaac ttggaatttt tcatgtgatt tttatcactc
     1561 tttcaagcga ggataatttt tttgagcaag gggttaaatt tgaagtcata tcttttgata
     1621 aattttcact tggattttag gtgttgtttg agtttgtatc gtatttttca aggttgtatc
     1681 gtttgatgat ttttgtaata agattgatat aatatccctt gcgttcagaa taagaatcta
     1741 aagttttaat ggcctctagc cctgttatct ctttgccttc gctttcaaat ttagctcttg
     1801 catcgcgaaa cttttcataa gcaaaatgac gatttaaatt taaaacataa gagtcaacac
     1861 tatcttgcag actatcaaaa attttaattt tgtgtttttt atctggatgt cttaaatcag
     1921 gaattaaacc tttctcaccc caagtccatt ctccaaaaag attgtttgct tctcttgcga
     1981 agcgactggt acctgtagca ctttcaacta aagcttgggc tatacccatg gattttggaa
     2041 ttttttgaat acgtttttta tattctgcaa aatcataaag attttcaatg cgatatttgt
     2101 tttttattgt gataagtttt tcaagattta tttggtttga agtcctaaag cctgttttgt
     2161 aagcatcttt aaaaaaggct tcgataaagg ctctttcttg ttcaattttt ttaaagcttt
     2221 gatcaaacat ttcattcatt tttataaaaa aaatttgtct tttttgatct atatcaagtt
     2281 tgtaatattc ctctccaaat ccactcttta gatcatcagc aaaaagtggg attagaaaaa
     2341 gactaagaaa aattataatt ggcttcaaaa caatacttta cctttccttc aaaaaacaat
     2401 tcttcatttt tatatgcaaa ccctacctct tcaccacttt taggagttat tttaacttta
     2461 ttttgtactt ttttatttaa aaatgccaga taaaaacaag cccccattcc tgtgccacaa
     2521 gctaaggttt catcttcaac tccgcgttca taggtgcgaa cttttaaatg attttcatct
     2581 aaaattttta caaaattaac attggcatta tatttttgtc tcattttttg acaaagcatt
     2641 gtatcaaatt catctaaatt ttgacaaaaa tgtactagat gtggaactcc agtgttgcaa
     2701 agttgccaag tttttcctaa ttcttcaaaa gtattttgca cgctttttat tttgcctaaa
     2761 gatacttcaa ctttatcttg atttaccttt gcttttatta ctcctgcacc agttaaaaaa
     2821 ctcatgttag gatttatttt gttaatatga tgtgcaaaat gtgccgcagc ccttgagcca
     2881 ttgccacaca tagcagccct tgagccatcg ttattataaa attcccattc aaagtcgtat
     2941 ttttcatgag gtaatatcac gataaagcca tccgcaccta taccctcata acgattacaa
     3001 agttctttag ctaaagcact tctatcttct tttctatcag catttgttat gacaaaatca
     3061 ttcccacttg cacaatattt ataaaatttc acatttttcc tttagaaatt tcttgtatta
     3121 ctttaacaca ttcttgccta aaatcggcat aagaattagt atttttaatg ataaaatctg
     3181 cttttttaag tttttcttca atatctattt gagaatcaag tcttgctttt gcagcttcta
     3241 agctgagctt atctctttgc atgattcttt taaggcttaa ttctttaggt gtgtaaatta
     3301 caatgacttt gcctaaattt tcataagcac cgctttcaaa aaaaagagga atttctacaa
     3361 aaaaagcttt attttcctta tctagaattt gcatttgttc taaaatttta gctcgaattt
     3421 taggatgagt gaaattttct aagatttttt tagcttcttt gttgttaaaa acaatttctc
     3481 caaggatttt tctatcgatt ttcttttctt ttgtgagtaa attttttaaa ctaaagggag
     3541 aaaaaatctt ttcaagctct aaagcatttt catctaaaat ttcatgagcg attttatctg
     3601 cactaatgct tttaaagcct aaagaattcg ctatttctat aaaggtgctt ttaccacaag
     3661 caattgaagc ggttacaaaa aaagcatttt tcatcttatg ccttattaaa acttttttcg
     3721 ttaaaatacc tttttagttc ttaaaggaaa ataaatgaaa atttcatatg aagatgcagg
     3781 cgtaagtata gataatggaa atgcctttgt agaggctata aaacctttgg ttaaagaaac
     3841 ttttaatgat aatgttgtag gcggaattgg ttcttttgct ggtgctttta gaatgccaag
     3901 tggttttaaa aagcctgtga ttttaggtgc aacagatggg gttggtacca agcttcgctt
     3961 ggcaattgat gctaaaaaat atgatactat agggcaagat ttagtagcaa tgtgtgtgaa
     4021 tgatttgatt tgtaattttg ctacaccttt gtttttccta gattattatg ctacagccaa
     4081 gctcgaagta gaagtagcaa aggctgttgt atcaggcatt gccaagggat gtaagatggc
     4141 aaattgtgca ttaatcggcg gagaaactgc tgaaatgcct ggaatgtatg caaaagatga
     4201 ttttgatctt gcgggttttg cagtgggtat ggctgaagaa gatgagattg atagaagtaa
     4261 atttgttaaa aatggtgata ttttgttggc acttcctagt tcaggacttc attcaaatgg
     4321 ttattcttta gctagaaaag tactttttga aagtttaaaa ttaaaatttg atgacaagat
     4381 agagggtaaa aatttaatcg atattttatt agaacctaca aggatttatg tgcgtgattt
     4441 tcttacacta aagccttata tcagtgctct agctcatatt acagggggtg gtttagtaga
     4501 aaatttacca cgcgttttac ctcgtggtat gggtgcaact atacgcaaac atcatcttaa
     4561 aactcctgaa attttttata ctataggaca ggctgtagaa gaaagcgaaa tgtatagaag
     4621 ctttaacatg ggagtgggtt tagtaatggt tgtagatcct tctaatgtaa gtaaggtttt
     4681 agaaaattca gatgccttta ttatcggcga aatttgcatt aatgaaggta ttgttttaga
     4741 atgaaaataa agcgtcaata cgctttattt ttgtagttct tattttttat actaggaaaa
     4801 ggcaatgcta taaactttca tatcactttg gttaaaattt aactataggt attttttatt
     4861 taaaattcca ctctttttat attatgatta taagtaa
//
LOCUS       DAZBIH010000107         4699 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.108, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000107 DAZBIH010000000
VERSION     DAZBIH010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.108"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            46..3558
                     /locus_tag="ACHFOB_001515"
     CDS             46..3558
                     /locus_tag="ACHFOB_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-[ACP]--phospholipid O-acyltransferase"
                     /protein_id="HFN5800294.1"
                     /translation="MQKKSFLKIYGLIPFLLIVFINAFVDLGHKIIIQNTIYKAYEGS
                     EQLFLNAIVNALILLPFILMLSPSGFLADKYPKNIVMKISAIFNVILTLIICICYYSG
                     AFWMAFIFTFIMGAQAAIYSPSKYGFIKELVGKDFLAMGNGVINAVSIVAILAGMALF
                     SLSFESLYSSMYNQTDEILKEVAPLGIVLILFSCIEVFFACRLPKLKQTNKDLVFNKK
                     DYIRGKLLINNLKLVFKNKTIWFCIIGISFFWAISQLYLVSFPVFAKNELFIENTFYV
                     QISLAFSGIGVILGSLVAGKFSKNYIELGLIPLGASGMFLMVFLMPCFISLLSYSFLF
                     FFFGFCGALFIIPLNTLIQFHAKENELGQILAGNNFFQNIAMLGFLLLATLFAKFEIN
                     VVYLFYFIALVTFIGSFYILLKLPFSLVRILLSIAFLQRYRLLVEGFENIPEKGGALL
                     LGNHISFIDWAVVQMAIPRKIYFVMERSIYSKWYIKFFLDKFGIIPVSSTGSKTSLEL
                     IAKHIKEGNLVCLFPEGTLSRHGQLNEFKAGFELACEYLSEDDGKIIPFYIRGLWGSA
                     FSRSDEEFSARNRTLNKRKIAIAFGKAMPLHSKKDEVKAKVFELSFMAWKSQCEAMHT
                     IARAWIDTAKKNLNQIAIIDTLAGDISYRKMLTLSLFLNFFIKRKSKELNINPQRGSY
                     APKEEAIGILLPASFASSLTNLSVLIAEKIAVNLNFTAGEKALKAAIKNAQISQIYTS
                     KTFLEKLANKGINLNFDTNIHLIYFEDIIEDFKMQKTKIFSMMLAVSIMPSFILKSIF
                     TPSKNNLAIAAILFSSGSEGSPKGVMLNNRNILSNIAQISDVLCTRNNDVILSSLPPF
                     HAFGLTVTTFLPLLEGIKSITFADPTDALGVAKAVAKNNITIMCGTSTFLGIYARNKK
                     LDALMFESLRIVVSGAEKLKNEVRTAFEMKFKKSIFEGYGATETTPVASVNLPNRFDA
                     DYWLIHRANKEGSVGMPLPGTAVRIVDPNNYENLKTNEDGLILIGGHQVMVGYLNDKE
                     KTDEVIKEIDGIRWYNTGDKGHLDKDGFLYIVDRYSRFAKIGGEMISLGAIEEEITKF
                     VDTEVVKFCATSLEDEKKGEQIVLLIECNNEIFERVCEAIKNSNIPTLFKPRYYFQIE
                     KIPLLGSGKVDLKKVKELAKNLAL"
     gene            complement(3566..4477)
                     /locus_tag="ACHFOB_001516"
     CDS             complement(3566..4477)
                     /locus_tag="ACHFOB_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HFN5800295.1"
                     /translation="MFVFIPLFTIFILLAGGYFAKRIGVLKQKQARTFLDFAIIFALP
                     CLIFDKAYHLNFDFSLIIFIFIGLFSCILAAFFAILIGKVFHFSKVTLVSMFLLSCFG
                     NTIFVGMPIVAGVFNDPQFSAEVIFYDALATTLPISLFGPFILSLGNGEKVSLLANVK
                     KILSFPPFLALLFGFLCKLITLPEFIFSPIRLFGASATPVALFAIGLGLGFMAIKTSY
                     KPTVIVIFAKMILAPLFFVFCLKIFNLELKDSTIVAIIESAAPTMTLAGAMVMKAKLD
                     SNLAVSAVAFGVLFAFVSMPILIWALL"
BASE COUNT         1704 a          619 c          751 g         1625 t
ORIGIN      
        1 ataaattctt ttgtaaaata agtgctaatt gacgaggttt aaataatgca aaaaaaatct
       61 tttttgaaaa tttacggatt aattcctttt ttacttatag tattcatcaa tgcttttgtg
      121 gatttgggac ataaaattat tattcaaaat actatttata aggcctatga aggaagtgag
      181 cagttatttt taaatgctat agttaatgct ttgattttac ttccttttat tcttatgctt
      241 tctccttcgg gttttttagc ggataaatat ccaaaaaata ttgtaatgaa aatttcagca
      301 attttcaatg ttatactcac tttaataatt tgcatttgtt actatagcgg tgctttttgg
      361 atggctttta tttttacttt tataatggga gcacaagcag cgatttattc accaagtaaa
      421 tacggtttta ttaaagaact cgtaggaaaa gactttcttg ctatgggtaa tggtgtaatt
      481 aatgcggtaa gcattgtggc aatcttagcg ggaatggctt tattttcttt aagctttgaa
      541 agtctttata gttctatgta taatcaaaca gatgaaattt taaaagaagt agcaccttta
      601 ggaattgtgt taattttatt ttcttgtatc gaagtatttt ttgcatgtcg tttacctaag
      661 ctcaaacaaa caaataaaga tttagttttt aataaaaaag attatatccg tggaaaactt
      721 ctaataaata atcttaagct tgtttttaaa aataaaacta tttggttttg cataattgga
      781 atttcatttt tttgggctat atctcaactt tatcttgtca gctttcctgt ctttgccaaa
      841 aatgaacttt tcatagaaaa tactttttat gtgcaaattt cactcgcttt ttctggtata
      901 ggagtgattt taggctcttt agtagctggt aaattttcaa aaaattatat agaacttgga
      961 cttattccac ttggtgcatc gggtatgttt ttaatggttt ttttaatgcc ttgttttata
     1021 agtttattaa gttatagttt tttatttttc ttttttggat tttgcggagc cctttttatc
     1081 attcctttaa atactttaat ccaatttcat gccaaagaaa atgaattggg acaaattctt
     1141 gcaggaaata atttttttca aaatattgcc atgttaggat ttttactctt agcaacttta
     1201 tttgcaaaat ttgaaatcaa tgtggtttat ttgttttatt ttattgcttt agtaaccttt
     1261 ataggaagtt tttatatact tttaaaactt cccttttctt tagtgcgtat acttttaagc
     1321 atagcttttt tacaacgata ccgcttactt gtagaaggtt ttgaaaatat accagaaaaa
     1381 ggtggagctt tacttttggg taatcatatt tcttttattg attgggctgt tgtacaaatg
     1441 gcaattccaa gaaaaattta ttttgttatg gaaagaagca tttattctaa atggtatatt
     1501 aaattttttc ttgataaatt tggtattatt cctgtatcaa gtacaggaag taagacgagt
     1561 ttagaactga tagcaaagca tatcaaagaa ggtaatttag tttgcttatt tcctgaaggt
     1621 acactttcac gacatggaca attaaatgaa tttaaagcag gatttgaatt agcttgtgaa
     1681 tatttaagcg aagatgatgg aaaaattatt cctttttata taagaggact ttggggtagt
     1741 gctttttcaa gaagcgatga agaattttca gcaagaaacc gcactttaaa taaaagaaaa
     1801 attgctatag cttttggtaa agctatgcct ttgcattcta aaaaagatga agttaaagct
     1861 aaagtttttg aactttcttt tatggcttgg aaatcacaat gcgaagctat gcatactata
     1921 gcaagagctt ggatagatac agctaaaaaa aatctaaatc aaatagctat tatcgataca
     1981 ctagctggag atatttctta tagaaaaatg ttgactctta gtttatttct taattttttt
     2041 attaaaagaa aatccaaaga attaaacatt aaccctcagc gtggaagtta cgctcctaaa
     2101 gaggaagcta taggaatttt actacctgct tcttttgcaa gttctttaac caatctatct
     2161 gttttaatcg cagaaaaaat tgcagtaaat cttaatttca cggctggaga aaaagctcta
     2221 aaagcagcta taaaaaatgc gcaaatttca caaatttata cttctaaaac ttttttagaa
     2281 aaattagcaa ataaaggcat aaacctaaat ttcgatacaa atatacattt aatttatttt
     2341 gaagatatta tagaagattt taaaatgcaa aaaactaaaa tttttagcat gatgttagca
     2401 gttagtataa tgcctagttt tatactcaaa agtatcttca ctccttcaaa aaacaatctt
     2461 gccatcgcag ctattttatt tagcagtgga agcgaggggt ctccaaaagg tgttatgcta
     2521 aataaccgta atattttaag caatatagca caaatttctg atgtactttg cacaagaaac
     2581 aatgatgtta ttctctcgtc tttaccacct tttcatgctt ttggacttac cgtaactaca
     2641 tttttgcctt tgcttgaagg tattaaaagt atcacttttg cagatccaac tgatgcctta
     2701 ggggttgcca aagctgttgc taaaaataat atcactatta tgtgtggaac ttcaaccttt
     2761 ttaggaattt atgcaagaaa taaaaaactt gatgctttaa tgtttgaaag cttaagaata
     2821 gttgtatcag gtgctgaaaa actaaaaaat gaagtaagaa ctgcttttga aatgaagttt
     2881 aaaaaaagca tttttgaagg ttatggagct acggaaacta cacctgtagc gagtgtaaat
     2941 ttaccaaatc gttttgatgc ggattattgg cttatacatc gtgccaataa agaaggaagt
     3001 gtaggaatgc ctctacctgg aactgcagtg cgtattgttg atccaaataa ttatgaaaat
     3061 ttaaaaacaa atgaagatgg actcatactt ataggcggtc atcaagttat ggtaggctat
     3121 cttaatgaca aagaaaaaac cgatgaagtg attaaagaaa ttgatggtat aagatggtac
     3181 aacacgggag ataaagggca tttagataaa gatggttttt tatatattgt cgatcgttat
     3241 tctcgctttg caaaaattgg cggagagatg atttctttgg gtgcaataga agaagaaatt
     3301 accaaatttg tagacactga agtggttaaa ttttgtgcca catctttaga agatgagaaa
     3361 aaaggagaac aaattgtttt actcatagag tgtaataatg aaatttttga aagagtatgt
     3421 gaggctataa aaaattctaa tatacctaca ctttttaaac ctagatatta ttttcaaata
     3481 gaaaaaattc ccctcctagg ttcaggaaaa gttgatctaa agaaagttaa agaattagct
     3541 aaaaatttag ccctataatt tgagcttata ataaagccca aattaaaatt ggcatagaaa
     3601 caaaagcaaa aagaactcca aaggctacag cacttacggc taaattacta tctagtttag
     3661 ctttcattac catagctcct gctaaagtca tagtaggagc tgcactttct ataatagcaa
     3721 cgatggtaga atcttttaat tctaaattaa atatttttaa acaaaataca aaaaataaag
     3781 gagctaaaat cattttagca aagatgacaa ttactgtagg tttgtaagag gttttaatcg
     3841 ccataaagcc aagtcctaaa cctatggcaa aaagtgcgac aggggttgca gaagcaccaa
     3901 ataaacgaat aggagagaaa ataaattcag gtaaagtaat caatttacac aaaaaaccaa
     3961 aaagcaaagc taaaaaaggt ggaaagctaa gaattttttt aacattagca agcaaactga
     4021 ctttttctcc atttcccaaa gaaagtataa aaggtccaaa aagtgatata ggtaaagttg
     4081 tggctaaagc atcgtaaaat ataacttcag cgctaaattg cgggtcatta aatacaccag
     4141 caacaatagg catacccaca aatatagtat ttccaaaaca agaaagcaaa aacatactga
     4201 ctaaagttac tttagaaaaa tgaaaaactt ttccaataag aatagcaaaa aaagctgcta
     4261 gtatacagct aaacaatcca ataaaaataa aaataatcaa tgaaaaatca aaatttaaat
     4321 gatatgcttt atcgaaaatc aaacaaggta aagcaaaaat aatagcaaaa tctaaaaaag
     4381 tcctagcttg tttttgcttt aaaacgccaa ttcttttggc aaaatatccg cctgcaagta
     4441 aaataaaaat tgtaaataat ggtataaaaa caaacattga ataatccttt ttaagggatg
     4501 gtttttgaaa acggatagaa ttatattctt tatacttaaa aaaaatctta atatttttta
     4561 agttttttaa aaaaaccaat attttttatt ttttgtaact ttaagaaatt gtaagttgaa
     4621 atttgatttt gaatagttgg tattttaagt tgaatgatta taattttaaa taatggtgcg
     4681 gtttaatctt aattaaaat
//
LOCUS       DAZBIH010000108         4640 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.109, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000108 DAZBIH010000000
VERSION     DAZBIH010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4640
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.109"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1321)
                     /locus_tag="ACHFOB_001517"
     CDS             complement(<1..1321)
                     /locus_tag="ACHFOB_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HFN5800296.1"
                     /translation="METNIYEIELEIPNSGIFIMGLENENLIISLNIMKFIEINAEKI
                     ATLDGKLDVGGLAKPLHPYIIYEVLEKNNKNNFNDVEIIDKIEDENNIIYHFNFGLIL
                     NTFIGENEDNKDKEALKTLSFMQNFIPACFFSYQIIGDSKAIPKNVLEDLKNRYGYEG
                     KNYKSIFKKEVYINCNCLERLNFSHCEFESKVSLRFLKDNKYKEFHNGIDFSNCIFKN
                     EVDFSYFVSGAPLPDNKYYNNAQNTLFKDCIFENKVDFHNSKITNNIYFNNAHFKDYV
                     DFHECEFEKTANFYGVRFEKAPNFSACYFKEPKAVNLTNVNIDKLDFKSLEQYIEDNY
                     KDESYKNETKGIQDEKEIFKIQNEHQLRYAKNLKDSFRVIKDVLITQNNKLEVQEWHK
                     LELYAKEKELEIQLSKNKNDNLKKESKNQVYNPKDYEKFNYSKIIPLI"
     gene            complement(1321..4640)
                     /locus_tag="ACHFOB_001518"
                     /pseudo
     CDS             complement(1321..4640)
                     /locus_tag="ACHFOB_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
BASE COUNT         1434 a          723 c          600 g         1883 t
ORIGIN      
        1 ttataagagg tataattttt gaataattaa atttttcata atccttagga ttatatactt
       61 gatttttaga ttcttttttt aaattgtcat ttttattttt acttaattga atttccaatt
      121 ctttctcttt cgcataaagt tctaatttat gccattcttg aacttctaat ttattgtttt
      181 gagtaattaa aacatctttt ataaccctga aagagtcttt taaatttttg gcatatctta
      241 attggtgttc gttttgaatt ttaaaaatct ctttttcatc ttgtattcct ttggtttcgt
      301 ttttgtaact ttcatcttta taattatctt ctatatattg ttctaatgat ttaaaatcta
      361 atttgtctat atttacattt gttaaattta cagcttttgg ttctttaaaa taacaagcac
      421 tgaaattcgg agctttttca aatctcactc cataaaaatt agcagttttt tcaaattcac
      481 actcgtgaaa atcaacataa tctttaaagt gagcattgtt aaaataaata ttattggtaa
      541 ttttagaatt atggaaatca accttattct caaaaataca atctttaaat aatgtatttt
      601 gtgcattatt atagtattta ttatcaggca atggtgcacc tgatacaaaa taactgaaat
      661 caacttcatt tttaaagata caatttgaaa aatcaattcc attgtgaaat tctttatatt
      721 tattatcttt taaaaaacgc aaagatactt tggattcaaa ttcgcaatga gaaaaattta
      781 atctttctaa gcaattacaa tttatataaa cttctttctt aaaaatactt ttataatttt
      841 tcccttcata accatatcta ttttttaaat cctcaagaac atttttagga atagctttgg
      901 aatctcctat aatttgataa gaaaaaaaac aagcaggaat aaaattttgc ataaatgaga
      961 gcgtctttag tgcttcttta tctttattgt cttcattttc tcctataaat gtatttaata
     1021 tcaatccaaa attaaaatga tagataatat tattttcatc ttctatttta tctataattt
     1081 ctacatcatt aaaattgttt ttattatttt tttctaaaac ttcataaatg atatatgggt
     1141 gcaatggttt agctaatcct ccaacatcta actttccatc taaagttgca attttttctg
     1201 cattgatttc tataaatttc ataatattta aagaaataat taaattttca ttttctaaac
     1261 ccattataaa aataccgcta tttggtattt ctagttcgat ttcatatata tttgtttcca
     1321 ttatttccct tctatgattt ttatttcttc ttcggttaag ttatagagtt tataaacgat
     1381 ggaattgatt ttattttcta actcttgggt gtttgcgttt ttatcttgct ctttggcttt
     1441 taaaatctca tcgactagac ttattagctc atttgctaat ttttcatttt ttgaatttat
     1501 ttttggtata ggaagtcttt ctattttatc tttggctcca taagcataag aacctgtttg
     1561 tattaaattt gtttttaaag taattagcca tttataacaa ttagaattca taaaagctaa
     1621 tatatacttc aaactaaaaa catctaaagt catcataaac aaagaattat taaaaaatat
     1681 atgttcttta atataagaaa ataaatattc tccgcttact gggttccaaa ctatcttttc
     1741 cttttcaaat tcatctaaat aagcacaatt tctaagatta taaggagtca agcctttatc
     1801 agctcttttt tctagttgtg gataaaattc atcaaaatgc ttttttaaac taggataatg
     1861 ctctatattt atcgcttcta ctttttctcc attttgattt ttgtaaccat tgtgagtatt
     1921 tatcacccaa agtcctgccc attcataact atatcttttt atatcgcgtc cgcgtagcat
     1981 tttgcgtatg agtttggcgg tgcgttcttt ttcagcttca tctttgcaat ttgctaaaat
     2041 ttcatttctt ttttcagtgg tgatgataaa ggcttcattt aaacccgttt ttatcccata
     2101 gttgatatta agcccatacc attctttaag tggagttcct atgcgttcta tcttggcctt
     2161 taaagcacta gtattctcat cgctaaaagt gaagctttct ttgcttaaag aattttgcga
     2221 aaattctgca aagtccttat ataagccaat gtcataagca caagttttta aaatttcatt
     2281 gcttagggca aggtatttga atttattatc tttgcttttt gatttttcaa aacaaagtat
     2341 ggaagtatcc actgtagcac tatcaaaaac ttttatgcca tttaaatcag tgtattctaa
     2401 aaacttaaca tttttaagca aaaattcacg caaagcttcc ccatatcctg cacgcgtgta
     2461 tttgttagaa gtgatatagc tcaatacccc cccccctatc ttttaaaaca ttaaatccta
     2521 gttcataaaa ataagtataa atatcgctcg tgcctttata aaccttataa tttttagcta
     2581 aatggggctt gagttcttta agctcctctt gtcttatata aggcggattg ccgatgatga
     2641 gatcaaagcc tttgaaattt ccatcatcgt ccaaaatttc agggaattca aaacgccatt
     2701 caaaaggatg attgctttct agattaaaga tattgtcgta ttctttttta agatttgcaa
     2761 attcttttgt ggcttctttt tcatcaaagt caaaaagagt caaattcgca ctaacaaaga
     2821 atttcaaatt ttcatcatct acggctaaga aatttccgta ttttttagag tatttttcac
     2881 atttatcgtt aaagcctttc atttcttttt taaatttatc tgcaaagcag aaatttttaa
     2941 aagaaatttt gagatttttt atctcttgat tgatgtggct tttatctgtg taaaagcctt
     3001 ctttatagtc ttttactatg cgtttgtatt tgcccatacg ttctttgatg ttaggatagt
     3061 ggtttaggct tttgcctgtt tcaaagtaag acaccaaaga atttccgcat tttatgttta
     3121 tatcgatgtt tggcagggtt ttaagatcgt gataattctc atcatcaaag ctttgataaa
     3181 agctatgttt taaaagctct atccaaagcc ttagcttggt gatctcgcat gagttagggt
     3241 tgatatcgac tccaaaaagg ttgttttcta tgatgtcttt tttagtgtaa aaaagctctt
     3301 gctggataag atgggcttta tctttaggtg ttgttgggcg tttatactct ataaactcgc
     3361 cttttctacc cgtgatgaga atttcatcgt tttgcacttc taggtaaaac tcttcatcaa
     3421 aaagatttag ctcatcataa atgcttaaca taacatttaa agcagaaact aaaaaatgcc
     3481 cgcttcccac cgcaggatcg caaattttta taaagtttaa aagctctttt tgtgcttttt
     3541 tgtcttcttt tcttaaagac tttcttagtt cgcttatatc tttagcatca agatcaaatt
     3601 gagcgttgaa tttatcaagc acaacttttg tgatgctttc tttgcacata taagaagtga
     3661 taaagcttgg cgtgtaaaag cttccttctt tgtagccatt gagtttttca aacacatttc
     3721 ctaaaacact tgaacttatg agttcttttt ggcttaaaat ttcgctttgc tcatcatcgc
     3781 taccaaaatc aaaactatcc aaaaattcaa acaagtattc taaaagcccc acttgtcctt
     3841 ttttagcctt gcatttatca tcttttagca cggtgttttt atagtaaaaa agctttaagt
     3901 cattacttaa gcttgaaatt tcaagcgtgt tttctatgct ttgtttttca aacaaagaag
     3961 aatttagata aggcagataa gcaaattcgc ttttctttcg cgtgcttttt tctttggcta
     4021 aaacttcaaa gaaaagttcg ctaagcttgt caaaatcagg gatttttttg aaatttaaaa
     4081 atttcaaatt tttatcatca ttaaaacgca ccaaatttga ctctataagc tttaaaaaca
     4141 aaatgcgatt aagccataag atcaaaagtt ttaagatggt ttcaaaattt tcttctttaa
     4201 gcttagaatt tatagcggtg tagaaagtgc cttgctcttc tttgctttct tcactttttg
     4261 cgatgatgag ttttgagttt tgtttgctct cacaaagccc taagatatat aaaagctctt
     4321 tgtaaaaagc gttgttgagt gaatttgcat cgttggggtt aaactcactt agcaaaaagt
     4381 ctctatgaaa agttttataa atacttgcta ggtttttaaa atttgatttt tgtttgtctt
     4441 ttaaaaacgt caagtcaatc aaaaagcctt ttaagttttc tttggaattt tctatgagtt
     4501 tggctacttc tttatagaat tcttcagtat tgcctttgaa aagtgaattt ggattacaaa
     4561 attcttcaaa aagtttttta aaacttggat ttttataaaa aagctcttca aactcactaa
     4621 ttttaaaaat gtaaaattta
//
LOCUS       DAZBIH010000109         4620 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.110, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000109 DAZBIH010000000
VERSION     DAZBIH010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4620)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4620)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4620
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.110"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..594)
                     /locus_tag="ACHFOB_001519"
     CDS             complement(<1..594)
                     /locus_tag="ACHFOB_001519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFN5800297.1"
                     /translation="MLKVCNLSKFYELKKHWYLKKERHIIFDNVNFSLNENDNLIILG
                     KSGAGKSTLARILCFLEDPSEGEVWYENLNLHKLDKNKQRLLRKQIQYCFQDQKMALN
                     PYKKIKNLIQDGLENFNLQKNDDLILEFFDFFSLKKQILEQKSYELSGGEATRVGLIR
                     ALVLNPKLLILDEITSAFDIKISKEILTFLYDYQQKNN"
     gene            complement(587..1297)
                     /locus_tag="ACHFOB_001520"
     CDS             complement(587..1297)
                     /locus_tag="ACHFOB_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HFN5800298.1"
                     /translation="MKVRNLNISLKNNLLLKDINLDIKTGKTLMILGQSGVGKSLLGK
                     VLVRLLDSNFTISFDELSFHNSCIFNFNKEELRNFRSKVALVLQDAELSLYPYLDIGN
                     LCHLVLKTHTKLKQKERKDYAFSYFQKLGFENLDRLWHSYANELSLGMARRVSLALAL
                     LNQPQILICDEITASLDKENASKIISILKELKNTTALVCITHDLNLVNSLADEILMLE
                     KNSSNLYSLDEFLRYYNA"
     gene            complement(1294..2088)
                     /locus_tag="ACHFOB_001521"
     CDS             complement(1294..2088)
                     /locus_tag="ACHFOB_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5800299.1"
                     /translation="MILFKFLIILAPLIFLFLCALFAPFLAPFDILSTHLENLYQAPN
                     FTYILGTDFLGRDLFSRLLFALRNSLIIGVGGSLLSIIFALCYLFLARCFFYVFWMRI
                     LEFFLALPAFLLMMFFQSMITSDVFLMIFLIALIHWCFIARIIESELKRLENLDFYKA
                     NIVLGRTKFRAFFKDLIPALKTLIFTLFIFNIVHAIATEATLSFFGLGLGFEIPTLGT
                     LLSESSKAVFIGAWWIILFPLLSLLLLFLPLLWLGNFLQKIWGIRS"
     gene            complement(2075..3019)
                     /locus_tag="ACHFOB_001522"
     CDS             complement(2075..3019)
                     /locus_tag="ACHFOB_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HFN5800300.1"
                     /translation="MLKRLVFSIVVAFFSTFLCFVLLYFSKGSIAYTNGVNSQSKEFV
                     QRIEQNLGLDKPLLEQYKIWLFKALKGDLGVSFLSGESVLKLIKERIFNTFILGFNAL
                     MLLFLLSVFLALLGYYYKESFIDKIITFLAFNFFALPPFVLALLFVLIFGIFWKILPV
                     MGSSDIGFEDDFLNRLEHLILPVLVLVLSHLALFLRIARNFINESFSQIFIQNLYARA
                     LREKDIYFLVLKYSLSPIVAYFGGSALSFMMGTYVVESVFAYEGLGSLLFKSIIFKDY
                     PVVLALIFFSVLLAAFFTFLSDIVARILNPRLRRLDFV"
     gene            complement(3019..4554)
                     /locus_tag="ACHFOB_001523"
     CDS             complement(3019..4554)
                     /locus_tag="ACHFOB_001523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HFN5800301.1"
                     /translation="MLRFLIFAMLLFVNLEAKIPKDTLIIAVENEIARINPAYSEDHD
                     AVINLVFSGLTRFDENMSLKPDLAKSWDVSKDGLVYDIFLRDDVLWHDGVKFSADDVK
                     FSIEAFKNPKNNSSVYVNFEDIKSVEILNPSHVKITLFKPYPAFLDALSIGMLPKHLL
                     ENENLNTSSFNQNPIGTGPYKFVKWKKGEYVEFKANEHFYLDKVKTPRLIIKHIFDPS
                     IASAQLKNGKIDAALIDVSLLNIFKNDENFGILREKSADYRALMFNFDNEFLKDLKVR
                     QALNYAVDKESIVKNLLHDYAFVANHPLERSWANSKNFKIYKYDPKKAEDLLVSAGFK
                     KNKDGNFEKDGKILEFEIWAMSNDPLRVSLAGILQSEFRKIGVVSKVVAKPAGSFDYS
                     KVDSFLIGWGSPLDPDFHTFRVFESSQDSALNDEGWNFGHYHDKKVDIALQKARNTSN
                     LEERKKYYKDFIDALYENPPFIFLAYLDFALVYNKDLKGIKTRILGHHGVGFTWNVYE
                     WNK"
BASE COUNT         1838 a          812 c          485 g         1485 t
ORIGIN      
        1 attatttttt tgctgatagt catataaaaa agttaaaatt tctttagaaa ttttaatatc
       61 aaacgctgaa gtaatttcat ctaaaatcaa caatttagga tttaaaacca aagcacggat
      121 aagacctaca cgtgtggctt ctcctccgct taactcatag gatttttgtt ctaaaatttg
      181 tttttttaga ctaaaaaaat caaaaaattc taaaatcaag tcatcattct tttgtaaatt
      241 aaaattttcc aaaccatctt gtataagatt tttgattttt ttataagggt ttaaagccat
      301 tttttgatct tgaaagcaat attgaatttg ctttcttaaa agtctttgtt tgtttttatc
      361 aagcttgtgt aagttaagat tttcatacca tacctcaccc tcacttggat cttctaaaaa
      421 acaaagaatt ctagctaatg tgcttttacc tgcaccactt ttacctaaaa ttattaaatt
      481 gtcattttca tttaaagaaa aattgacatt atcaaaaata atatgtcttt ctttttttaa
      541 ataccaatgc tttttaagct cataaaactt acttaaatta caaactttaa gcattataat
      601 accttaaaaa ctcatctaag ctatataaat ttgaactatt tttttctagc ataagaattt
      661 catctgctaa agaatttacc aaatttaaat catgagtgat acaaactaag gctgtagtat
      721 tttttaattc ttttaaaatc gatataatct tagaagcgtt ttctttatcc aaagaagctg
      781 tgatttcatc acaaattaaa atttggggtt gatttaataa tgccaaagct aggctcaccc
      841 ttcttgccat acccaaactt aattcattag cataagaatg ccacaaacga tcaagatttt
      901 caaatcctaa tttttgaaaa taagaaaaag cataatcttt tctttctttt tgttttaatt
      961 ttgtatgagt ttttaaaaca agatgacata aatttccaat atccaaataa ggataaagac
     1021 taagctctgc atcttgcaaa acaagtgcca ccttagaacg gaaatttcta agctcttctt
     1081 tgttaaaatt aaaaatacaa gaattatgaa aacttaattc atcaaaactt attgtgaaat
     1141 tagaatctaa aagtcttacc aaaacttttc ctaacaaact tttgcccact ccactttgtc
     1201 ctagtatcat taaagtttta cctgttttta tatctaaatt aatatcctta agcaataaat
     1261 tattcttcaa actgatattt aaatttctta ccttcaagat cttatacccc aaattttttg
     1321 taaaaaatta cccaaccata aaagaggtaa aaacaacaaa agcaagctta aaagtggaaa
     1381 aagtattatc caccaagcac ctataaaaac cgcttttgaa gactcactca aaagagtacc
     1441 taaagttgga atttcaaatc ctaaacccag tccaaaaaaa ctcaaagtag cttctgtggc
     1501 tatagcatga acgatattaa atataaaaag tgtaaaaatc agtgttttta aagcaggtat
     1561 taaatcttta aaaaaagctc taaatttagt tcttccaagc actatatttg ctttgtaaaa
     1621 atctaaattt tcaagtcttt ttaattcact ttctataatt cttgctatga aacaccaatg
     1681 aattaaagcg attaaaaaaa tcatcaaaaa cacatcagaa gttatcatac tttgaaaaaa
     1741 catcataagt aaaaaagcag gcaaggctaa aaaaaactct aaaatacgca tccaaaaaac
     1801 gtaaaaaaaa catcgcgcta aaaacaaata gcacaaagca aagataatag acaataaaga
     1861 tccaccaaca cctataatca aagaatttct caaagcaaaa agcaaacgag aaaacaaatc
     1921 tctgcctaaa aaatcagtcc ctaaaatata agtaaaatta ggagcttgat acaaattttc
     1981 taaatgagtg cttaaaatat caaaaggagc caaaaaaggt gcaaacaagg cgcataaaaa
     2041 caaaaaaatt aaaggcgcaa gaatgataag aaatttaaac aaaatcaagc cttcttaatc
     2101 taggatttaa aatcctagct acaatatcac ttaaaaatgt aaaaaatgct gcaagcaaaa
     2161 cactaaaaaa tataagtgca agtacaacag gataatcttt aaaaataata cttttaaaaa
     2221 gtaaagaccc aagcccctcg taagcaaaga cactttctac cacataagtt cccatcataa
     2281 aacttaaagc acttccccca aaataagcca caataggact taaagaatat ttcaaaacta
     2341 aaaaataaat atctttctcc cttaaagctc tagcgtataa attttgaata aaaatttgag
     2401 aaaaactttc attgataaaa tttctagcaa tccttaaaaa taacgccaaa tgtgataaaa
     2461 cgagcaccaa aacaggcaaa atcaaatgct ctaaacgatt taaaaaatca tcttcaaaac
     2521 ctatatcact gcttcccata acaggcaaaa ttttccaaaa aattccaaaa atcaaaacaa
     2581 acaataaagc caaaacaaaa ggaggtaaag caaaaaaatt aaaagctaaa aaagtgatga
     2641 ttttatctat aaaactttct ttataataat atcctaaaag tgctaaaaaa acactgagta
     2701 aaaataaaag cattaaggca ttaaaaccca aaataaaagt attaaaaatt ctttctttta
     2761 taagctttaa aacactttct ccacttaaaa aagaaactcc taaatctcct tttaaagcct
     2821 taaaaagcca aattttatac tgctctagca aaggcttatc aagccctaaa ttttgttcta
     2881 ttctttgaac aaattcttta ctttgtgaat taactccatt agtataagct atactgcctt
     2941 tactaaaata aagcaaaaca aaacataaaa aagtgctaaa aaatgctacg acaatactaa
     3001 aaactaagcg ttttagcact atttattcca ctcataaaca ttccaagtaa aacccactcc
     3061 gtgatgacct aaaatccttg ttttgatacc ttttaaatct ttattataaa ctaaagcaaa
     3121 atcaagataa gctaaaaaaa taaaaggagg attttcatac aaagcatcta taaaatcttt
     3181 ataatatttt tttctctctt ctaaatttga agtatttctt gctttttgca aggctatatc
     3241 cactttttta tcatgataat gtccaaaatt ccaaccctca tcatttaaag cactatcttg
     3301 cgaactttca aataccctaa aagtgtgaaa atcaggatct aaaggacttc cccagcctat
     3361 taaaaaacta tctactttag aataatcaaa acttccagca ggtttagcca ccaccttgct
     3421 tacaactcct atttttctaa attcgctttg caaaattcca gctaaactta cccttaaagg
     3481 atcattactc atcgcccaaa tttcaaattc taaaattttc ccatcttttt caaaatttcc
     3541 atctttattt ttcttaaaac ctgcacttac aagcaagtcc tcggcttttt taggatcata
     3601 tttgtaaatt ttaaaattct tagaatttgc ccaagaacgc tctaaagggt gattggctac
     3661 aaaagcataa tcatgtaaaa gattttttac tatactttct ttatcaactg cgtaatttaa
     3721 ggcttgtctt acttttaaat cttttaaaaa ttcattatca aaattaaaca ttaaagcccg
     3781 ataatcagcc gatttttcac gtaaaattcc aaaattttca tcatttttaa aaatatttag
     3841 caaagaaaca tcgattaaag ctgcgtctat cttgccattt ttaagctggg cactagctat
     3901 agaaggatca aaaatgtgtt ttataataag tcttggagtt tttaccttat caagataaaa
     3961 atgttcattg gctttaaatt caacatattc accttttttc cattttacaa atttataagg
     4021 acctgtacct ataggatttt gattaaaaga acttgtgttt aaattctcat tttcaagcaa
     4081 atgtttagga agcattccta tgcttaaagc atctaaaaat gcaggataag gtttaaaaag
     4141 tgtgattttt acatgagaag gatttaaaat ttccacactt ttaatgtctt caaaattgac
     4201 ataaacagaa gaattgtttt taggattttt aaaggcttct atgctaaatt tcacatcatc
     4261 agcactaaat ttgactccat catgccataa aacatcatct cttaaaaaaa tatcataaac
     4321 aagcccgtct ttactaacat cccaagactt agccaaatca ggttttaaac tcatattttc
     4381 atcaaaacgc gtaagtcctg aaaatacaag attaatcact gcatcgtgat cctcactata
     4441 agcaggattt atccttgcga tttcattttc aactgctata ataagtgtat cttttgggat
     4501 ttttgcttcc aaatttacaa acaacaacat tgcaaaaatt aaaaatctca acataaaaaa
     4561 cctttttatt ttaataacgc acaaaattat aaaacaaaaa aactcaactc gcaagcctat
//
LOCUS       DAZBIH010000110         4545 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.111, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000110 DAZBIH010000000
VERSION     DAZBIH010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4545
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.111"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            29..1165
                     /gene="pseA"
                     /locus_tag="ACHFOB_001524"
     CDS             29..1165
                     /gene="pseA"
                     /locus_tag="ACHFOB_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid biosynthesis protein PseA"
                     /protein_id="HFN5800302.1"
                     /translation="MKFCKKCVMPDTKPDLHFDEEGVCDACRSQEAKNQNINWQEREK
                     EFFELIKKYKKHPVYDCVIGVSGGKDSTFQVVKMLELGLNPLCVCFEPSVPTKIGRKN
                     LDNLNHLGVDLIHIKRDPKVYQKLAREAFIRTGDNEWQNHLGIFTSVPRIAVNFGVPL
                     IIWGESPQIEYGGPASSKNKNILGREWLEEFGGLLGNRASDMLGVNGITEKDLFLYTY
                     PSDEELQRVGVTGLFLGYYFKWDYKKILEISKKYGFLTLDHPVETTYENFENLDCYSN
                     HVHDYLKYCKYGFGRATDNACLDIRLGYISREEGVRLVQKYDGKPPKKAIKKYLEFSG
                     FSEEEFQKIVDSFTNKKIFKRDENGKFIRDYDGSLVRKDECVLK"
     gene            1162..1767
                     /gene="hisH"
                     /locus_tag="ACHFOB_001525"
     CDS             1162..1767
                     /gene="hisH"
                     /locus_tag="ACHFOB_001525"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - L-histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HFN5800303.1"
                     /translation="MIALIDYKAGNLNSVAKAFEKIGAINFIAKNPKDLQKADKLLLP
                     GVGSFKEAMKNLKELGFIEALKEQVLVQKKPILGICLGMQLFLERGYEGGVCEGLGFI
                     EGEVVKFEEDLNLKIPHMGWNELEILKQDPLYQGINNKSDFYFVHSFYVKCKDEFVSA
                     KAQYGHKFVASLQKDRIFATQFHPEKSQNLGLKLLENFARL"
     gene            1768..2514
                     /gene="wbuZ"
                     /locus_tag="ACHFOB_001526"
     CDS             1768..2514
                     /gene="wbuZ"
                     /locus_tag="ACHFOB_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016833 - oxo-acid-lyase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl amidation-associated protein WbuZ"
                     /protein_id="HFN5800304.1"
                     /translation="MLKTRIIPCVLLKNGQLVKSIEFKDFRTIGHLTSTMRIYNARNV
                     DELIILDIDASKSGEIDFESIEDLAKECFMPLTIGGGIKTLEDIQKILNLGADKISIN
                     SKALEDMDFISKAANRFGSQCIVCSIDVKRKGGQFCVYDRGNLLEKSPLELALEYEKK
                     GAGELLLTSVDFEGRAKGYDLELLKIFQNKLKIPLIINGGLSNPSDGVEALNLGADAL
                     AGAYIFHFSKYTPKDVKEELARQGFAVRLL"
     gene            complement(2479..2952)
                     /gene="pseH"
                     /locus_tag="ACHFOB_001527"
     CDS             complement(2479..2952)
                     /gene="pseH"
                     /locus_tag="ACHFOB_001527"
                     /EC_number="2.3.1.202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-4-amino-4,
                     6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase"
                     /protein_id="HFN5800305.1"
                     /translation="MIKLKNFTELNSQEIELIFKWRNHPDINQFMKTKYIDFEEHLRF
                     LKKLHQDSSKKYFLVFQDEQIIGVIDFVNITTKSCEFGLYAKPNLKGVGQILMNEIIK
                     YAFENLKVNTLKAYVFKDNRKALKLYQQNHFTIYDEDKDFYHICLKQSDCKALPS"
     gene            complement(2949..3773)
                     /gene="pseG"
                     /locus_tag="ACHFOB_001528"
     CDS             complement(2949..3773)
                     /gene="pseG"
                     /locus_tag="ACHFOB_001528"
                     /EC_number="3.6.1.57"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-2,4-diacetamido-2,4,
                     6-trideoxy-beta-L-altropyranose hydrolase"
                     /protein_id="HFN5800306.1"
                     /translation="MKVLFRSDSSSQIGFGHIKRDLVLAKQYSDVSFACLPLEGSLID
                     EIPYPVYELDSESIYELINLIKEEKFELLIIDHYGISVDDEKLIKLETGVKILSFDDE
                     IKPHHCDILLNVNAYAKASDYEGLVPFKCEVRCGFSYALIREEFYQEAKENREKKYDF
                     FICMGGTDIKNLSLQIASELPKTKIISIATSSSNPNLKKLQKFAKLHNNIRLFIDHEN
                     IAKLMNESNKLIISASSLVNEALLLKANFKAICYVKNQESTATWLAKKGYEVEYKY"
     gene            complement(3757..4455)
                     /gene="pseF"
                     /locus_tag="ACHFOB_001529"
     CDS             complement(3757..4455)
                     /gene="pseF"
                     /locus_tag="ACHFOB_001529"
                     /EC_number="2.7.7.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0070567 - cytidylyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pseudaminic acid cytidylyltransferase"
                     /protein_id="HFN5800307.1"
                     /translation="MKNLCIIPARGGSKRIPRKNIIDFLGKPLIAYSIENALNSGIFD
                     EIVLSSDDEEIIEVALKYGAKAPFVRDKNLSDDYASSTAAVQNAIEILQSQNQIYDHV
                     CCLYATAPLLNKNILKQAYEKFIQNQSKFLFAATEFEYPIQRAFYLNENNQVYMFDEK
                     HYKSRSQDLTKAYHDAGAFYFGTSKAWLEEDFIFKPHSSVFVLPRNLVCDIDTMQDLE
                     FAKILYKVNHESAF"
BASE COUNT         1543 a          599 c          808 g         1595 t
ORIGIN      
        1 tatatttaag actaattaaa ggaaatttat gaaattttgt aaaaaatgtg tgatgccaga
       61 tactaagcct gatttacatt ttgatgaaga aggtgtttgt gatgcttgtc gttctcaaga
      121 agctaaaaat caaaatatta attggcaaga aagagaaaaa gaattttttg agcttataaa
      181 aaaatacaaa aaacatcctg tttatgattg tgttatcgga gtaagtggcg gaaaagattc
      241 tacttttcaa gtggttaaaa tgcttgaact tggacttaat cctttgtgtg tgtgttttga
      301 gcctagcgta cctacgaaaa tagggcgcaa aaatttagac aatttaaatc atcttggcgt
      361 ggatttgatc catatcaagc gtgatccaaa agtttatcaa aaacttgccc gtgaagcttt
      421 tataagaaca ggggataatg agtggcaaaa ccatttggga atttttactt ctgttccacg
      481 catagcggta aattttggag tgcctttgat catctgggga gaaagtccgc agatagagta
      541 tggcggtcct gcgagtagta aaaataaaaa tattttaggc agagagtggc ttgaagaatt
      601 tggcgggctt ttaggaaatc gtgcttctga tatgcttggg gtaaatggta tcactgaaaa
      661 agatttgttt ttatatactt atccaagcga tgaagaactt caaagagtag gggttacggg
      721 gctattttta gggtattatt ttaaatggga ttataaaaaa attcttgaaa tttctaaaaa
      781 atatggtttt ttaactctag atcatcctgt tgagactact tatgaaaatt ttgaaaattt
      841 agattgttat tctaatcatg tgcatgatta tttaaaatac tgcaaatacg gctttggtag
      901 agcaacggat aatgcttgtt tggatattcg tttaggttat atcagccgtg aagaaggggt
      961 gcgtttggta caaaaatacg atggcaagcc ccctaaaaag gctattaaaa aataccttga
     1021 attcagtggt tttagcgagg aagaatttca aaaaatagta gattctttta ccaataaaaa
     1081 aatttttaaa cgtgatgaaa atggtaaatt tataagagat tatgatggtt ctttggtaag
     1141 aaaagacgag tgtgttttaa aatgatagcg ctcattgatt acaaggcggg aaatttaaac
     1201 tctgttgcta aggcttttga aaaaatagga gctataaatt tcatagctaa aaatccaaaa
     1261 gatttgcaaa aagcagataa attgctttta cctggagtgg gatcttttaa agaagcgatg
     1321 aaaaatttaa aagaacttgg ttttatagaa gctttaaaag agcaagtttt agtacaaaaa
     1381 aaacctattt taggcatttg tttaggaatg cagctttttt tagaaagggg ctatgaaggt
     1441 ggagtttgcg aaggacttgg ttttatagaa ggtgaagtag tcaaatttga agaggattta
     1501 aatttaaaaa tcccacacat gggttggaat gagcttgaaa ttttaaaaca agatcctttg
     1561 tatcaaggca taaataataa gagtgatttt tattttgtgc attcttttta tgtgaaatgc
     1621 aaagatgagt ttgtaagtgc taaagcacaa tacggacata aatttgttgc atctttacaa
     1681 aaagatcgta tctttgcgac gcaatttcac cccgaaaaaa gtcaaaattt aggtttaaaa
     1741 cttttagaaa attttgcaag gctttaaatg ttaaaaacta gaattatccc ttgtgttttg
     1801 ttaaaaaacg gacaacttgt taaaagtata gaatttaaag attttcgcac tatagggcat
     1861 ttaacttcaa caatgagaat ttataatgca cgcaatgttg atgagcttat tatcttagat
     1921 atagatgctt caaaaagtgg agaaatagat tttgaaagta tagaagatct tgctaaagaa
     1981 tgttttatgc ctttaactat aggtggcggg ataaaaaccc ttgaagatat acaaaagatt
     2041 ttaaatttag gtgcggataa aatttctatc aattctaagg ccttagaaga tatggatttt
     2101 ataagtaaag cggctaatcg ttttggttct caatgtatag tttgttctat agatgttaaa
     2161 agaaaaggag ggcaattttg tgtttatgac aggggaaatt tacttgaaaa aagtccttta
     2221 gaacttgctt tagaatatga aaaaaaagga gctggagagc ttcttttaac ttctgtggat
     2281 tttgaaggaa gggcaaaggg ttatgattta gaacttttaa agatctttca aaataaactt
     2341 aaaattcctc ttattatcaa tggaggactt agcaatccaa gtgatggagt tgaggcttta
     2401 aatttaggtg ctgatgcttt agcgggtgct tatatttttc atttttctaa gtatacccct
     2461 aaagatgtaa aagaagaatt agctaggcaa ggctttgcag tcagattgct ttaggcaaat
     2521 atggtaaaaa tctttatctt catcataaat agtaaaatga ttttgttgat ataattttaa
     2581 agctttgcga ttgtctttga aaacataagc tttaagagta tttactttta agttttcaaa
     2641 agcgtatttt ataatttcat tcattaaaat ttgtcctacg ccttttaaat taggttttgc
     2701 gtaaagtcca aattcgcaag atttagttgt gatattgaca aaatcaatta cgccgataat
     2761 ctgttcatct tgaaaaacta aaaaatattt tttgctagaa tcttgatgta atttttttaa
     2821 aaatcttaaa tgttcttcaa aatcaatata ttttgttttc ataaattgat tgatatcggg
     2881 gtgattgcgc catttaaaaa tcagctctat ttcttgagaa ttaagttctg tgaaattttt
     2941 aagttttatc aatacttata ctccacttca tacccttttt tagcaagcca agttgctgta
     3001 gattcttgat ttttaacata acaaatagct ttgaaatttg cctttaaaag caaggcttca
     3061 ttgactaaag aacttgcact aatgatgagt ttattgcttt cattcatcaa ttttgcaata
     3121 ttttcatgat cgataaataa tctaatattg ttatgtaatt ttgcaaattt ttgcaatttt
     3181 ttaagattag gattagaaga gctggttgca atgctgatga tttttgtttt aggtaattcg
     3241 ctagcaattt gtaaagaaag gttttttata tcagttccac ccatgcaaat gaaaaaatca
     3301 tatttttttt ctctattttc tttggcctct tgataaaatt cttccctgat taaagcataa
     3361 gaaaaaccac atcttacttc gcatttaaaa ggcactaaac cttcataatc acttgctttt
     3421 gcataggcat tgacattgag taaaatatca caatgatgag gctttatttc atcatcaaag
     3481 cttagaattt tcacccctgt ttcaagcttg atcagttttt catcatctac gctgatgcca
     3541 tagtgatcaa tgataagaag ttcaaatttt tcttctttga tgagattgat aagttcgtaa
     3601 atgctttcac tatcaagctc ataaacagga taaggaattt catcgatcaa agagccttct
     3661 aaaggcaaac aagcaaaact tacatcgcta tattgtttag ctaagactag atcacgttta
     3721 atgtgtccaa agcctatttg actggagcta tcgcttctaa aaagcacttt catgatttac
     3781 cttataaagt atttttgcaa attctaaatc ttgcatggta tctatatcgc aaactaaatt
     3841 tcttggcaat acaaatacac tagaatgagg tttaaatata aaatcttctt caagccaagc
     3901 tttacttgtg ccaaaataaa aagctcctgc atcatgataa gcttttgtta agtcttgtga
     3961 acgactttta taatgttttt catcaaacat ataaacttga ttgttttcat ttagataaaa
     4021 agccctttgt ataggatact caaactcagt ggcggcaaat aaaaacttgc tttgattttg
     4081 tataaatttt tcataagctt gttttaaaat gtttttattt aaaagcggag cagtagcata
     4141 aagacaacag acatgatcat aaatttgatt ttggctttgt aaaatttcta tggcattttg
     4201 cactgcagca gtgcttgaag cataatcatc gcttaaattt ttatcacgca caaatggagc
     4261 ttttgcaccg tattttaagg ctacttctat gatttcttca tcgtcgcttg aaagtactat
     4321 ttcatcaaaa atacctgaat ttaaagcatt ttctatgcta taagcgatta aaggtttacc
     4381 tagaaaatca atgatatttt ttctaggaat tctttttgat ccaccacgag cagggattat
     4441 gcaaagattt ttcatagtta agccttgttt tttgtgtttt attttactaa aatttaagta
     4501 taattgtctt taaaatacaa taaaataatg caaatggggt ggaat
//
LOCUS       DAZBIH010000111         4385 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.112, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000111 DAZBIH010000000
VERSION     DAZBIH010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4385)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4385)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4385
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.112"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..989
                     /locus_tag="ACHFOB_001530"
     CDS             <1..989
                     /locus_tag="ACHFOB_001530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002876735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800308.1"
                     /translation="NKYDAISNPLSKEKNAKEELKYNTILFKQLFPLCANYLNPQNIA
                     ILLASTRIVGMKIPGLHSIYSSLNLNFSNDNIENKQLIYNYEKHHSIECYLIDFISPC
                     KGSIKAFIRPQLVKNLNYKSLVLKYPNISENKNFKEQKALVIGASSGLGNTCAKILAL
                     GGAKILATYHTKNIQEDIPNCDFLQYNVLKPSKISIEKIKKFNPTHIYYFATPKISTQ
                     NNKLDRKMLFDFLDYYIFGLEKILSFTSPISSSSSSSSSIEDLPLDMKEYSIAKAAME
                     IYMKYLKKTKNIEIKIPRFPRAKTNQTLSFIPQDLKETDELIVSMLLNKGLK"
     gene            986..2548
                     /locus_tag="ACHFOB_001531"
     CDS             986..2548
                     /locus_tag="ACHFOB_001531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HFN5800309.1"
                     /translation="MNLFSPHLKRNELIKFAKELDFSKSQDLLINVHRNHAFEGVQSI
                     IAPFLHFANLRAEFNFSSYDDSLSFDNFKEASLELLWLDLTRYKNNVQNFIEERLLEL
                     RKISQNPILVLSLGEFKTDKKILNCEIFNIEKLIKEYFDEEDILDLAKEELTGSKLNN
                     KALIFLAQILGLSLIPALVKPALKALVLDLDNTLYQGILGEEGIDNLNLSPLHKTLQE
                     KIKTFKKQGFLLALASKNEEKDAKKLFETRKDFILQWDDFDARMINWEPKGENILKIA
                     KKFNINTNAMLFIDDNIAELENTKFTGVKTLLCDENILYKIKLFPNLLKLSNTKEDQI
                     RAKDIAANALREELKSLSDEEYFQNLEISLNFSKNDLQNIPRISELLGKTNQFIANYT
                     RLNQEKVTQHMQKELIVSVSMSDKLSDSGIIAIFVFSCKEGNLFIDDLCISCRALGRK
                     LETRMFFKAFELALHFFDLKNNNARLYYQKGERNMPFLSFLEQISKEIEKNSALVSFQ
                     NLNFKGLIIHEN"
     gene            2538..3599
                     /locus_tag="ACHFOB_001532"
     CDS             2538..3599
                     /locus_tag="ACHFOB_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase III"
                     /protein_id="HFN5800310.1"
                     /translation="MKTRFDKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKK
                     VIGLNTRYICDENTCVSDLGKHAANTLLQGLNIDKNSLDALIVVTQSPDFFMPSTACY
                     LHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLGKILLICGDTLSKFIHPKNM
                     NLAPIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLM
                     QTEEFRQLENLYMDGANIFNMALECEPKSFKEILEFSKVDEKDIAFHLFHQSNAYLVD
                     CIKEELKLNDDKVPNFIMEKYANLSACSLPALLCELDTPKEFKASLSAFGAGLSWGSA
                     VLNFKDLYTKDILIYTKEK"
     gene            3599..3820
                     /locus_tag="ACHFOB_001533"
     CDS             3599..3820
                     /locus_tag="ACHFOB_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN5800311.1"
                     /translation="MTKTEFLEELKEAMHRDEELNEDMLLDDIDEWDSLAFVSVMVLY
                     KNLFALKITAEDLKNCQKVSNLINLAKLD"
     gene            complement(3834..>4385)
                     /locus_tag="ACHFOB_001534"
     CDS             complement(3834..>4385)
                     /locus_tag="ACHFOB_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800312.1"
                     /translation="SAVPPLNYILGREMEHSYSEYYEDFPHNRIIFFLKTHWTRKENS
                     PYFFNNENYFIRTLLNKDHLILQSQKNKNIIYVSYHSKEDPLTPANFKEQTMQILKIL
                     GYDVSLNLIDENKIDGKFIKNLDHGCGIPDKALFRKELPLMLEKLQKRKSLMQENSIS
                     YPCGKKVFIFKDVGDKFELEIKD"
BASE COUNT         1637 a          637 c          638 g         1473 t
ORIGIN      
        1 ttaataaata cgatgctatt tcaaatcctt tatcaaaaga aaaaaatgca aaagaagagt
       61 taaaatataa caccattctg tttaaacagc tttttccatt atgtgcaaat tatttaaatc
      121 cacaaaatat agctatacta ctcgctagta cgcgtatagt aggcatgaaa attccgggtc
      181 ttcatagtat ttattctagt ttaaatttaa atttttcaaa tgataatatt gaaaacaagc
      241 aattgatcta taactacgaa aaacatcact ccatagagtg ctatttaata gactttataa
      301 gcccttgtaa aggctctatt aaagctttta ttcgtccgca acttgtaaaa aatttaaact
      361 ataaaagtct tgttttaaaa tatccaaata tatcagaaaa taaaaatttt aaagaacaaa
      421 aggcattggt cataggagct agtagtggtc ttggaaatac ttgtgctaaa attttagcat
      481 tagggggagc aaaaatttta gccacttatc acactaaaaa tatacaagaa gatattccaa
      541 attgcgattt tttacaatac aatgtcttaa aacctagtaa aatttccata gaaaaaatta
      601 aaaaatttaa tccaactcat atttattatt ttgcaacgcc aaaaatttca acacaaaaca
      661 acaaacttga ccgcaaaatg ttatttgatt ttttagatta ttatattttt ggtttagaaa
      721 aaattttaag ctttacaagt ccaatttctt cttcttcttc ttcttcttct tctatagaag
      781 atttaccctt agatatgaaa gaatatagta tagctaaagc agccatggaa atctatatga
      841 aatatcttaa aaaaacaaaa aatatagaaa ttaaaatacc aagatttcca agagcaaaaa
      901 ctaatcaaac cctaagtttt attccacaag atttaaaaga aacagacgaa cttatcgtct
      961 ctatgttatt aaacaagggg ctaaaatgaa tcttttttca cctcatttaa aacgcaatga
     1021 gcttataaaa tttgccaaag aattagactt tagtaaaagt caagatcttc ttattaatgt
     1081 ccatagaaat catgcttttg aaggagtgca aagcatcatt gctccttttt tacattttgc
     1141 taatttaaga gctgagttta atttcagctc ttatgatgat agcttgagtt ttgataactt
     1201 taaagaagct agtttagaac ttttatggct agatttaacc cgctataaaa ataatgtgca
     1261 aaattttata gaagaaagac ttttagaact aagaaaaatt tcacaaaacc ctattttagt
     1321 tcttagttta ggagaattta aaacagataa aaaaatttta aattgtgaaa tttttaacat
     1381 agaaaaactc ataaaagagt attttgatga agaagatatt ttagacctag ctaaagaaga
     1441 acttacaggc tctaagctta ataataaagc cttgattttt ttagcacaaa ttttaggact
     1501 tagcctcatc cctgcactcg taaaacccgc tcttaaagct cttgtacttg atcttgataa
     1561 taccttgtat caaggaattt taggtgaaga gggtatagat aatcttaatt taagtccttt
     1621 gcacaaaacc ttacaagaaa aaattaaaac ttttaaaaaa caagggtttt tacttgccct
     1681 agcttcaaaa aatgaagaaa aagacgcaaa aaaacttttt gaaacaagga aagattttat
     1741 cttacaatgg gatgattttg atgctagaat gatcaattgg gagccaaaag gtgaaaatat
     1801 cttaaaaatt gctaaaaaat ttaatataaa tactaacgct atgcttttta tagatgataa
     1861 tatcgccgag cttgaaaata ccaaatttac aggcgttaaa acacttttat gcgatgaaaa
     1921 tatactttat aaaatcaaac tttttcctaa tcttttaaaa ctttcaaata ccaaagaaga
     1981 tcaaattcgt gccaaagata tagcagccaa tgctttaaga gaagagctta aaagcttaag
     2041 cgatgaagaa tattttcaaa atcttgaaat cagcttaaat tttagcaaaa atgatctgca
     2101 aaatatccct cgcattagcg aacttttagg caaaaccaat caatttatcg ctaattacac
     2161 acgcttaaat caagaaaaag tcacacaaca catgcaaaaa gagctcattg taagtgtgag
     2221 catgagtgat aaattaagcg atagtgggat tatcgctatt tttgtttttt cttgcaaaga
     2281 aggaaattta tttatcgatg atctttgcat ttcttgtagg gctttaggta gaaaacttga
     2341 aactagaatg ttttttaaag cctttgaact agctttacat ttctttgatc ttaaaaacaa
     2401 taatgcaagg ctttactatc aaaaaggcga aagaaatatg ccatttttaa gctttttaga
     2461 acaaatttct aaagaaattg aaaaaaactc agcccttgtt tcatttcaaa atttaaactt
     2521 taaaggactt ataatccatg aaaactagat ttgataaagc caaaatttca ggcatttgcg
     2581 taagcgtacc tgaacataaa atttgcattg atgatgagtt agaaagcgtt ttttcaaatg
     2641 atattaaaac ccttaaaaga atgaaaaaag tcataggttt aaacacgcgt tatatttgcg
     2701 atgaaaacac ttgcgtaagc gatcttggaa aacacgcagc caatacactt ttacaaggtt
     2761 taaatataga taaaaatagc cttgacgcac tcatcgtagt aactcaaagt cctgattttt
     2821 tcatgccttc tacggcttgt tatttacatc agcttttaaa tttaagctct aaaaccatag
     2881 cttttgattt agggcaagct tgcgcaggat atttatacgg cttatttgtc gctcattctt
     2941 taatacaaag tggcttaggt aaaattttac tcatttgtgg ggatacttta agcaaattca
     3001 tccaccctaa aaatatgaat ttagccccaa tttttggcga tggagtaagt gcaactttga
     3061 ttgaaaaaac ggattttaat gaagcctttt ttgaacttgg aagcgatggg aaatattttg
     3121 ataaactcat cattccaaaa ggtgcgatga gaatacctaa agcagatatt ttcaacgatg
     3181 attcactcat gcaaactgag gagtttagac aattagaaaa tctttacatg gacggagcaa
     3241 atattttcaa tatggctttg gaatgcgaac ctaaaagctt taaagaaatt ttagaatttt
     3301 ctaaagtaga tgaaaaagac attgcttttc atctttttca tcaatccaat gcgtatttgg
     3361 ttgattgtat taaagaagaa ttaaaactta atgatgataa agttcctaat tttatcatgg
     3421 aaaaatacgc taatttaagt gcttgttcgc tacctgctct actttgcgag ttagatactc
     3481 caaaagaatt taaagcgagt ttgagtgctt ttggcgcagg gcttagctgg ggaagtgcgg
     3541 tgctaaattt caaggattta tacacaaaag atattttaat ttacacaaag gagaaataat
     3601 gacaaaaact gaatttttag aagagcttaa agaagctatg catagagatg aagagttaaa
     3661 tgaagatatg ctacttgatg atatagatga gtgggatagt ttggcttttg tatctgtgat
     3721 ggtgctttac aaaaatcttt ttgctttaaa aatcacagcc gaggacttga aaaattgtca
     3781 aaaagtgagt aatttaatca atttagcaaa gcttgattaa aacctttaag gttttaatct
     3841 tttatctcta attcaaattt atctcccaca tctttaaata taaacacttt ctttccacaa
     3901 ggataagaga tggaattttc ttgcattaaa gattttcttt tttgcaattt ttcaagcatt
     3961 aaaggaagtt cttttctaaa taaggcttta tcaggtatac cacaaccatg atctaaattt
     4021 ttaataaatt ttccatcaat tttattttca tctatcaaat ttaagcttac atcgtaacct
     4081 aaaattttta atatttgcat ggtttgttct ttaaaatttg ctggagttaa aggatcttct
     4141 ttactatgat aactcacata aataatattt ttattttttt gactttgtaa aattaaatga
     4201 tccttattta acaatgttct aataaaataa ttttcattat taaaaaaata aggtgaattt
     4261 tctttacgcg tccagtgggt ttttagaaaa aaaataatcc tattatgtgg aaaatcttca
     4321 taatattcac tgtagctatg ttccatttct cttcctaaaa tataatttaa aggtggaaca
     4381 gccga
//
LOCUS       DAZBIH010000112         4259 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.113, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000112 DAZBIH010000000
VERSION     DAZBIH010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4259
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.113"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..420
                     /gene="fabZ"
                     /locus_tag="ACHFOB_001535"
     CDS             <1..420
                     /gene="fabZ"
                     /locus_tag="ACHFOB_001535"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HFN5800313.1"
                     /translation="QEILPHRYPFLLVDKITELKVKEVVLGYKNISISDHVFMGHFPG
                     HPIYPGVLILEGMAQTGGVLAFESMEDKVDPKSKVVYFTGIDGAKFRNPVRPGDRLDY
                     EMSVVKNRGNMWIFKGQAFVDGNLVAEAELKAMIVDK"
     gene            420..1211
                     /gene="lpxA"
                     /locus_tag="ACHFOB_001536"
     CDS             420..1211
                     /gene="lpxA"
                     /locus_tag="ACHFOB_001536"
                     /EC_number="2.3.1.129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008780 -
                     acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine
                     O-acyltransferase activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-ACP--UDP-N-acetylglucosamine
                     O-acyltransferase"
                     /protein_id="HFN5800314.1"
                     /translation="MKKIHPSAVIEEGAQLGDDVVIEAYAYVGKDTKIGNDVVIKQGA
                     RILSDTTIGDHSRVFSYAIVGDIPQDISYKEEQKSGVVIGKNATIREFATINSGTAKG
                     DGFTRIGDNAFIMAYCHIAHDCLLGNNIILANNATLAGHVELGDFTVVGGLTPIHQFV
                     KVGEGCMIAGASALSQDIVPFCLAEGNRASIRSLNLVGTRRRFDKDEVDRLSRAFKTL
                     FRQGDLKENAKNLLENQESENVKKMCHFILETKRGIPVYRGKNNA"
     gene            1204..2427
                     /gene="clpX"
                     /locus_tag="ACHFOB_001537"
     CDS             1204..2427
                     /gene="clpX"
                     /locus_tag="ACHFOB_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002936863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046983 - protein dimerization activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit
                     ClpX"
                     /protein_id="HFN5800315.1"
                     /translation="MPRKCSFCNEVENPQRRILANENDDAFICEYCVEGAYSIIYGEE
                     KEFKEPKQSHNTEFKDITPKELKAYLDRYVIGQDRAKKVFSVGVYNHYKRLFKAELQD
                     DDTELFKSNILLVGPTGSGKTLLAQTLAKFLDVPIAICDATSLTEAGYVGEDVENILT
                     RLLQAADGDVQRAQKGIVFIDEIDKIARMSENRSITRDVSGEGVQQALLKIIEGSLVN
                     IPPKGGRKHPNQEFIQIDTSNILFVCGGAFDGLETILKRKLGDKVVGFFDDAKEENKA
                     LLEKIEPDDLVHFGLIPELIGRLHVIASLNELNEEDMVRILTEPKNAIIKQYQKLFAI
                     DGVNLKFEEDALRAIAQLALERKTGARGLRSIIEEMMVDLMFELPEYKNYDIVITKEV
                     VKDNAKALLIKRKIS"
     gene            2438..3478
                     /locus_tag="ACHFOB_001538"
     CDS             2438..3478
                     /locus_tag="ACHFOB_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0000902 - cell morphogenesis [Evidence
                     IEA];
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HFN5800316.1"
                     /translation="MILDQLIGFFSSDMGIDLGTANTLVLVKDKGIVINEPSVVAVER
                     ERYGSKAKILAVGKEAKDMVGKTPGNIEAIRPMKDGVIADFDMTEKMIRYFIEKTHRR
                     KSFLRPRIIISVPYGLTQVERKAVRESALSAGAREVFLIEEPMAAAIGASLPIQEPKG
                     NLVVDIGGGTTEIGVISLGGLVISKSIRTAGDKLDMSIVNYVKEKYNLIIGERTGEEI
                     KITIGSAIQLPKELSMVVKGRDQVSGLLSRIELTSEDVREAMREYLKEIADALKMVLE
                     MMPPDLASDIVENGVVLTGGGALIRGFDKYLSEIVRLPVYIADEPLLAVAKGTGKALE
                     EISLLQQLTNEE"
     gene            3468..4217
                     /gene="mreC"
                     /locus_tag="ACHFOB_001539"
     CDS             3468..4217
                     /gene="mreC"
                     /locus_tag="ACHFOB_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0008360 - regulation of cell shape
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HFN5800317.1"
                     /translation="MKNKIFYVLVLAFLVFISFYYGGLIKQNVLRVNDFVIGNFYNIK
                     DYLGKKISEHFNQANQIQQLKARNKELEDIAVKVTSFANQLNRILEDQNSTKYLPQVS
                     LTRVISYVQLNDYKKLWLDWSKIPVGKNRGLIYQGYAAGIAINKNGRAMALLQGDDQC
                     VFSVYIGKSKAPGLIQGEDGRIVVKFIPKWAKINTGDEILTSGLDNIFFSDIPVGIVN
                     RVNDEDMYQSVEVKPYVKISIPAYLYVVDNL"
BASE COUNT         1504 a          478 c          913 g         1364 t
ORIGIN      
        1 caagaaatct taccacaccg ttatcctttt ttactggtag ataaaattac agaattaaaa
       61 gttaaagaag tggtgctagg atataaaaac atcagtataa gtgatcatgt ttttatggga
      121 cattttccag ggcatcctat ttatcctgga gttttgattt tagaaggtat ggctcaaaca
      181 ggtggagttt tagcttttga aagtatggaa gataaagtgg atccaaaaag taaagtagtt
      241 tatttcacag gcatagatgg agcaaaattt agaaatcctg tgcgtcctgg agataggctt
      301 gattatgaaa tgagcgtggt taaaaatcgt ggtaatatgt ggatttttaa agggcaagct
      361 tttgtagatg gaaatttagt tgcagaggcc gagcttaaag ctatgatagt ggataaataa
      421 tgaaaaaaat tcatccaagt gcggtgattg aagagggtgc acaacttggt gacgatgttg
      481 taatagaagc ttatgcttat gtaggtaaag atactaaaat aggtaatgat gttgtcatca
      541 aacaaggtgc tcgaattctt tcagatacaa ctataggtga tcattctcgt gtattttctt
      601 atgcaatagt aggcgatatt cctcaggaca tatcttataa agaagagcaa aaaagcggtg
      661 ttgttatagg gaaaaatgca actattagag aatttgcaac gataaattca ggtacagcta
      721 aaggagatgg ttttactcgt ataggcgata atgcttttat tatggcttat tgtcatattg
      781 ctcatgattg tcttttaggt aataatatta ttttagctaa taatgcaact ttggcaggac
      841 atgtagagct tggagatttt acggttgtag gcgggcttac acctattcat caatttgtca
      901 aagtaggtga gggttgtatg atagcaggag caagtgcact ttctcaggat atagtaccgt
      961 tttgtttagc agaaggaaat cgtgcaagta ttagaagttt aaatttagta ggcactcgtc
     1021 gtcgttttga taaagatgaa gtagatagac ttagtagagc ttttaaaact ttatttagac
     1081 aaggagattt aaaagaaaat gctaaaaatt tgcttgaaaa tcaagaaagt gaaaatgtta
     1141 aaaaaatgtg ccattttata ttagaaacaa agcgtggaat tcctgtctat aggggtaaaa
     1201 ataatgccta gaaaatgtag tttttgcaat gaagtggaga atccacaaag aagaatttta
     1261 gcaaatgaaa atgatgatgc ttttatttgt gaatattgcg ttgaaggtgc ttatagtatt
     1321 atttatggag aagaaaaaga atttaaagaa cctaaacaaa gtcataatac agaatttaaa
     1381 gatatcactc caaaagaatt aaaagcttat ttagatcgtt atgtcatagg acaagataga
     1441 gctaaaaaag tttttagtgt tggagtatac aatcattata aaagactttt taaagctgaa
     1501 cttcaagatg atgatacaga gctttttaag tcaaatattt tacttgttgg gccaacagga
     1561 agtggaaaaa ctttattggc gcaaacttta gctaaatttt tagatgtacc tatagcaatt
     1621 tgtgatgcaa cttctttaac tgaagcagga tatgtaggtg aggatgtgga aaatatttta
     1681 acacgtcttt tacaagctgc agatggagat gtgcaaagag ctcaaaaagg tatagttttt
     1741 attgatgaga ttgataaaat tgctagaatg agtgaaaatc gttctattac tcgtgatgta
     1801 agtggagagg gtgtgcaaca agctttactt aagattatcg aaggaagttt ggtaaatatt
     1861 ccaccaaaag ggggaagaaa acatccaaat caagagttta tacaaattga cacttcaaat
     1921 attttatttg tttgtggtgg agcttttgat ggtttggaaa ctatcttaaa aagaaaactt
     1981 ggcgataaag ttgtgggctt ttttgatgat gcaaaagaag aaaataaagc tttacttgag
     2041 aaaattgaac ctgatgattt ggtgcatttt ggtttgattc ctgagcttat aggtcgtttg
     2101 catgtgattg catctttaaa tgagcttaat gaagaagata tggtaagaat tttaactgag
     2161 cctaaaaatg ccattattaa gcaatatcaa aagctttttg ctattgatgg ggtaaattta
     2221 aaatttgaag aagatgctct aagagctatc gcacagcttg cattggagag aaaaacaggg
     2281 gctagggggc ttagaagtat tatagaagaa atgatggtag atttaatgtt tgagttacca
     2341 gagtataaaa actatgatat tgtaataacc aaagaagttg ttaaagacaa tgcaaaggca
     2401 ttattaataa aaagaaaaat aagttaaaag gatagaaatg atattagatc aacttatagg
     2461 atttttttct agtgatatgg ggattgattt aggaacagct aatacgctag ttttggtaaa
     2521 agataagggt atagtgataa acgagccttc tgttgtggca gttgaaagag aaaggtatgg
     2581 ttccaaagca aaaattttag ccgtaggtaa agaagctaaa gatatggtgg gaaaaactcc
     2641 aggcaatatc gaagctattc gtcctatgaa agatggcgtg attgcagatt ttgatatgac
     2701 tgaaaaaatg atccgctatt ttatagaaaa aacacatcgt agaaaaagtt ttttacgccc
     2761 tagaattatt atttctgttc cttatggttt aactcaagta gaaagaaaag cggtaagaga
     2821 aagtgcttta agtgcaggtg caagagaggt atttttgatc gaagagccta tggcagcagc
     2881 tattggtgca agtttaccta tacaagaacc taaaggaaat ttggtagtag atataggggg
     2941 tggaactact gagatcggag tgatttcttt gggtggactt gtgatttcaa agtctattcg
     3001 tacggctgga gataagcttg atatgagtat agttaattat gtaaaagaaa aatacaatct
     3061 tatcataggt gaaagaacag gcgaagagat caaaatcacc ataggttcag caatacaact
     3121 tccaaaagaa ctttctatgg tggtaaaagg acgcgatcaa gtaagtggac ttttaagtcg
     3181 tattgaactt acaagtgaag atgtaagaga agcaatgcgt gagtatttaa aagaaattgc
     3241 tgatgcttta aaaatggttc ttgaaatgat gccgcctgat ttagcaagtg atatagtaga
     3301 aaatggtgta gttttaacag gtggtggagc attgattcgt ggttttgata aatacttaag
     3361 tgaaattgta cgtttgccag tttatatcgc agatgaaccg cttttagctg tagcaaaagg
     3421 aacgggtaaa gctttagagg aaatttcatt attgcaacaa ttaaccaatg aagaataaga
     3481 ttttttatgt tcttgtctta gcctttttgg tttttatatc tttttattat ggaggactta
     3541 tcaagcaaaa tgttctccgt gttaatgatt ttgttatagg taatttttat aatattaaag
     3601 attatttggg aaaaaaaatt tcagaacact ttaatcaagc aaatcaaatt cagcaattaa
     3661 aagctagaaa taaagaatta gaagatattg ctgtaaaggt aactagtttt gcaaatcaat
     3721 taaatcgtat tttagaggat caaaattcta caaaatattt acctcaagtt tctttaacta
     3781 gagttatttc ttacgttcaa ttgaatgatt ataaaaaatt atggttagat tggagcaaaa
     3841 ttccagttgg taaaaatcgt ggtttaatat atcaaggata tgctgcaggt atagctatta
     3901 ataaaaatgg tagagcaatg gctctcttac aaggtgatga tcagtgtgtt ttttctgttt
     3961 atataggaaa atccaaagct ccaggtttaa tccagggtga agatggcagg attgtggtta
     4021 aatttattcc aaaatgggca aaaattaata ccggagatga aattttaaca agtggacttg
     4081 ataatatttt cttttcagat atacctgttg gtattgtgaa tagagttaat gatgaagata
     4141 tgtatcaaag tgtagaagta aagccttatg ttaagattag tattcctgct tatttatatg
     4201 tagtagataa tttataagtc aaggattaga ctttttaaaa attttctata tttttgcta
//
LOCUS       DAZBIH010000113         4241 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.114, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000113 DAZBIH010000000
VERSION     DAZBIH010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4241)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4241)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4241
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.114"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            61..375
                     /locus_tag="ACHFOB_001540"
     CDS             61..375
                     /locus_tag="ACHFOB_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800318.1"
                     /translation="MKKILTSALALGAMTLIVDCGDGDLVELKNNGNDQAMFDLGNQE
                     IMKKYPNHKLYDYTSVRTISDINNPEGKIKEMKRDLEIDKTPYSNYVFLLNPNDKKTI
                     KL"
     gene            complement(532..1629)
                     /gene="prfB"
                     /locus_tag="ACHFOB_001541"
     CDS             complement(532..1629)
                     /gene="prfB"
                     /locus_tag="ACHFOB_001541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344837.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0016149 - translation release factor
                     activity, codon specific [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HFN5800319.1"
                     /translation="MDNYEFSELLKTLKNKVGNIASIIKPENIQTRLKEIEELENSPS
                     FWSDVKQAGIIGKEKTKITNLLKNYENAFNALNDANELFDLANSENDTETLEALFNDA
                     SKLEDTITSLEISMLLSGENDGKNAIVSIHPGAGGTESNDWASILYRMYLRFCEREGF
                     KVETLDFQEGEEAGLKDVSFLVKGENAYGYLKAENGIHRLVRTSPFDSAGRRHTSFSS
                     VMVSPELDDDIEIEIEEKDIRIDYYRASGAGGQHVNKTESAVRITHFPTGIVVQCQND
                     RSQHKNKATAFKMLKSRLYELELMKQQDSANTGEKSEIGWGHQIRSYVLFPYQQVKDN
                     RSGEAFSQVDNILDGDIKKMIEGVLIALKAE"
     gene            1703..3022
                     /gene="rimO"
                     /locus_tag="ACHFOB_001542"
     CDS             1703..3022
                     /gene="rimO"
                     /locus_tag="ACHFOB_001542"
                     /EC_number="2.8.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008172 - S-methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016740 - transferase activity [Evidence
                     IEA];
                     GO_function: GO:0016782 - transferase activity,
                     transferring sulphur-containing groups [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0018339 -
                     peptidyl-L-beta-methylthioaspartic acid biosynthetic
                     process from peptidyl-aspartic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12 methylthiotransferase
                     RimO"
                     /protein_id="HFN5800320.1"
                     /translation="MSKLYLMSLGCNKNLVDSEIMLGRLSAYELCDEPSKADVIIVNT
                     CGFIDSAKKESINAILDLHEQRKKDSLLVVTGCLMQRYREELMKELPEVDLFTGVGDY
                     ERIDEMILKKTNLFSNSTYLQSENSKRIITGSNSHAFIKIAEGCNQKCSFCAIPSFKG
                     KLKSREISSIIAELKDLVARGYKDFSFIAQDTSSYLFDKGEKDGLIRLIDEVEKIKGI
                     RAARILYLYPTSASEALIKRIIASEIFVNYFDMPLQHISDNMLKIMKRGANSTRLKEM
                     LNLMKSAPNSFLRTGFIVGHPGESEADFEELCEFVKDFGFDRVSVFAYSKEEDTTAFD
                     MEQVPFKVINKRLKIIEKIVDEVIEKSFEKEVGQKRLVVCTGESSEGEFFIAAKDLRW
                     DREIDGEILINESECGNLEMGQIYECEILQNLDKKLLAKALRKVDAN"
     gene            3012..3977
                     /gene="tilS"
                     /locus_tag="ACHFOB_001543"
     CDS             3012..3977
                     /gene="tilS"
                     /locus_tag="ACHFOB_001543"
                     /EC_number="6.3.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA lysidine(34) synthetase TilS"
                     /protein_id="HFN5800321.1"
                     /translation="MQIKDEILALLKRGKNLLAFSYGSDSSVLFYLLMQEKIDFDLVM
                     INYKTRKNSDLEELKAKELALKFHKKIFIKHAPKFQSNFEKKARDFRYDFFEKICLEQ
                     GYDHLILAHHLNDQFEWFLMQLSRGAGLAEILGMQECEKRSNYTLLRPLLFISKDEIS
                     SFLKEKDIFYFHDESNENEKYFRNYIRKNFSNAFVSEFHQGLKRSFSYLDEDRKKLYD
                     FENIKEIQGLLICPKNESLIARAVKMKGLLLSTAQRKELLKGDCVLGGKIALAYKNEQ
                     AIVFEYETCQKLPKNFKEECRIAKIPRLLRAYLYNHKIDISSLSF"
     gene            complement(3960..>4241)
                     /locus_tag="ACHFOB_001544"
     CDS             complement(3960..>4241)
                     /locus_tag="ACHFOB_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800322.1"
                     /translation="ALFLPFINIFVYYLAFYYLFHKLLMIDVTSTILDKESFKNFHSD
                     FSPLEFKFSTLCFYLLSSVPLLGLFLQVFFVIFLTHLSYQRILKLKAKA"
BASE COUNT         1465 a          586 c          763 g         1427 t
ORIGIN      
        1 ttaaatttta aatttaggta tagttatatt aatttaattt taaaactagg agcaaaaata
       61 atgaaaaaga ttttaacaag tgctttggct ttaggagcta tgactttgat tgtagattgt
      121 ggcgatggcg atttagtcga gttaaaaaac aatggcaacg atcaagctat gtttgattta
      181 ggtaatcaag agattatgaa aaaatatcca aatcataaac tttatgatta tacttcagtc
      241 agaacaatta gtgatattaa caatccagaa ggcaaaatta aagaaatgaa gcgtgattta
      301 gaaatagata aaactccata ctcaaactat gttttcttat taaatccaaa cgataaaaag
      361 actataaagt tgtgagtgtt tattgcgata aagattttaa gaaaagagtt tattgttctg
      421 tgaatgatgc tcttaggttt tatgcaagat aataaaacaa gcgggaaaat cccgctatct
      481 ttctaatttt ttataccgac attttgcaga aattacttat ttttaagcct gttactccgc
      541 ttttaaggca attaaaacgc cttctatcat ttttttgata tccccatcaa ggatattatc
      601 cacttgagaa aaagcttctc cgctgcgatt gtctttgact tgctgataag ggaaaagcac
      661 ataagaacgg atttgatgcc cccaacctat ctcgcttttt tctccagtat tagcactatc
      721 ttgttgtttc atgagttcaa gttcataaag gcgagatttt agcattttaa aagcggtggc
      781 tttgtttttg tgctgacttc tgtcattttg gcattgtacg actatgccag ttggaaaatg
      841 cgtgattctc acagccgatt ctgttttatt gacatgttgt ccgcctgcac cgcttgctct
      901 gtaataatct attcttatgt ctttttcttc gatttcaatt tctatatcat catcaagttc
      961 agggcttacc ataacacttg aaaagcttgt atgacggcgt cctgcactat caaaaggaga
     1021 agttcttacc aaacgatgga taccattttc agcttttaaa taaccataag cattttctcc
     1081 tttaactaaa aagctcacat ctttaagtcc tgcttcttcg ccttcttgaa agtctaaagt
     1141 ttcgacttta aaaccttctc tttcacaaaa tcttaaatac attctataaa gtatgcttgc
     1201 ccagtcatta ctttctgttc cgcccgcacc tggatgaatg gaaacaatgg catttttacc
     1261 atcattttcc ccacttaaaa gcatggaaat ttcaagactt gtgatggtat cttcaagttt
     1321 tgatgcgtca ttaaataaag cttcaagcgt ttctgtatcg ttttcgctat tggctagatc
     1381 gaaaagttcg tttgcgtcat ttagcgcatt aaaagcattt tcatagtttt taagtagatt
     1441 ggtgatttta gttttttctt tacctatgat tcctgcttgt ttaacatcac tccaaaaaga
     1501 aggagaattt tcaagctctt cgatttcttt aagccttgtt tggatatttt caggcttgat
     1561 gatggaggct atgttgccga ctttgttttt taaagttttt aaaagttcgc taaattcgta
     1621 attatccata aaatttcttt gctataatta tatttttaaa gtcaaaaatt atatcaaaag
     1681 aaaactttaa tataggaaaa aaatgtcaaa actttatctt atgtctttag gttgtaataa
     1741 aaatttagtc gatagtgaga tcatgctagg gcgccttagt gcttatgaac tttgcgatga
     1801 accaagcaaa gctgatgtta taatcgtaaa tacttgtggt tttatcgata gtgcaaaaaa
     1861 agaaagtatt aatgcgattt tggatttgca cgaacaaaga aaaaaagatt ctcttttggt
     1921 ggttacgggt tgtttgatgc agcgttaccg cgaagaactt atgaaagaac ttcctgaggt
     1981 tgatcttttc acaggtgtgg gtgattatga aagaatcgat gaaatgatac ttaaaaaaac
     2041 aaatttattt tcaaattcga cttatttgca gagtgaaaat tccaaacgta ttatcacagg
     2101 ttcaaattcc catgctttta taaaaatcgc cgaaggttgt aatcaaaaat gctctttttg
     2161 tgccatccca agttttaaag gcaagttaaa atctcgtgag ataagtagca ttatagctga
     2221 gcttaaagat ttggtagcta gaggttataa ggacttttct tttattgcac aagatacgag
     2281 ttcttatttg tttgataagg gtgaaaaaga tgggcttata cgcttaatcg atgaggtgga
     2341 aaaaatcaaa ggcataagag cggctagaat tttatatctt tatcctacga gtgcgagtga
     2401 agctttgatt aaacgcatta tagcttctga aatttttgta aattattttg atatgccttt
     2461 gcagcacata agtgataata tgcttaaaat catgaagcgt ggggcaaata gcacaagact
     2521 taaagaaatg ctaaatttaa tgaaaagtgc gccaaatagc tttttgcgca cgggctttat
     2581 cgtagggcat ccaggtgaaa gtgaggcaga ttttgaagag ctttgtgagt ttgttaaaga
     2641 ctttggtttt gatagggtga gtgtttttgc gtattctaag gaagaagata caaccgcttt
     2701 tgatatggag caagtgcctt ttaaagtgat caataaaagg cttaaaatca tagaaaaaat
     2761 tgttgatgaa gtgatagaaa aaagttttga aaaagaagta gggcaaaagc gtttagtagt
     2821 ttgcacagga gaaagtagcg agggagagtt ttttatcgca gctaaagatt taagatggga
     2881 tagagagatt gatggggaaa ttcttattaa tgaaagcgaa tgtggaaatt tggaaatggg
     2941 gcaaatttat gaatgtgaaa ttttacaaaa ccttgataaa aaactccttg ctaaggcttt
     3001 aagaaaagta gatgcaaatt aaagatgaaa ttttagccct tttaaaaagg ggtaaaaatt
     3061 tactcgcttt ttcttatgga agtgattcta gtgtgctttt ttatctttta atgcaagaaa
     3121 agatcgactt tgatcttgtg atgataaatt acaaaactag aaaaaatagt gatttagaag
     3181 agttaaaagc caaagaactt gctttaaaat ttcataaaaa aattttcata aaacacgctc
     3241 ctaaatttca aagtaacttt gaaaaaaaag ccagagattt tcgctatgat ttttttgaaa
     3301 aaatttgtct tgagcaaggt tatgaccatc ttatcttagc ccatcattta aacgatcaat
     3361 ttgaatggtt tttgatgcaa ctttcacgag gcgcaggttt ggctgaaatt ttaggtatgc
     3421 aagagtgtga aaaacgctca aattatacac ttttacgccc tttactcttt ataagtaaag
     3481 atgaaatttc atctttttta aaagaaaaag atatttttta tttccatgat gaaagtaatg
     3541 aaaatgaaaa atattttaga aattatataa gaaaaaattt ctctaatgcc tttgtgagtg
     3601 aatttcatca gggtttaaaa agaagttttt cttatcttga tgaagacagg aaaaaacttt
     3661 atgattttga aaatatcaaa gaaattcaag gacttcttat ttgccctaaa aatgaaagct
     3721 tgattgctag agcggtgaaa atgaaaggtt tgcttttaag cacagcacaa agaaaagagc
     3781 ttttaaaggg tgattgtgtt ttaggtggta aaatagcact tgcatataaa aacgaacaag
     3841 ctattgtttt tgagtatgaa acttgtcaaa aattacctaa aaatttcaaa gaagagtgta
     3901 gaatagctaa aattccaaga cttttaagag cttatttata taatcataaa atcgatattt
     3961 caagccttag cttttagttt taaaattctt tgatagctta aatgtgtgag aaaaatcaca
     4021 aaaaatactt gcaaaaaaag tcctaaaagt ggtactgatg agagtagata aaaacaaaga
     4081 gtgctaaatt taaactctaa aggcgaaaaa tcggaatgaa aatttttaaa actttctttg
     4141 tctaaaatcg tgcttgtaac atcaatcatt aaaagtttgt gaaagagata ataaaaagca
     4201 agataatata caaaaatatt tataaaaggt aaaaataaag c
//
LOCUS       DAZBIH010000114         4229 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.115, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000114 DAZBIH010000000
VERSION     DAZBIH010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4229
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.115"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            49..2103
                     /locus_tag="ACHFOB_001545"
     CDS             49..2103
                     /locus_tag="ACHFOB_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_006655032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TonB-dependent receptor"
                     /protein_id="HFN5800323.1"
                     /translation="MKFKKSLLCFLILSGALLKAEEKYQLNDVVVSASGFEQDLVDAP
                     ASISIITKEELEKKPIKDIGEAIGDIPGVDVTMNKTGTYDFSIRGFGSSYTLVLIDGK
                     RQSVANGFYDNGFSGSESGYLPPLSMIERIEVIRGPASTLYGSDAVGGVINIITKKNP
                     DKTEANIEFNTLLQQHSNHYGNAGGFNAYVATPLIEDILSISARLKYYDKAASDLKWP
                     TPVWNNGNQRPDNYQIASHSPGAFTSLGFGSRLNWTVDDKNNIYFDIERYINEISVNS
                     TSSRAIKSERQLFKDNIVLNHDGNYDFGSTNSYLQYGSTKDKELHSQIWVGEGKVVLP
                     WNLGQYGNLVNTFGARIDYEILKNDQASAGSQIRGKNLDQTTVALYGENEYFIADDLI
                     FTTGLRYIYSDLFDSEFTPRVYLVYHLNDNIALKGGVSKGYKTPAAKQLTNGYYNYAN
                     NNAYFGNPDLKPEESINYELGVDFMVFDFAHYSITGFITDFTNQISSEDLTGMQNDIN
                     CSNGIVCKRPINLGKTQTKGIEFAFNTKTYNGFSLNSSYTFMDNRYKDGQKNWFGGDR
                     IENLPRHIAMLKLNYERGKFSSYIKTRARLDAIAKAKGGGNGSLPWQKYKPFYIVDLG
                     INYKINKQSSLSFAVQNLFDKNFFNPQVTRWDGANPAGYANRYQDYTEGRSFWLSYKY
                     DF"
     gene            2186..2782
                     /locus_tag="ACHFOB_001546"
     CDS             2186..2782
                     /locus_tag="ACHFOB_001546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HFN5800324.1"
                     /translation="MAFKNLKELSFEKSNYIKPKRFAYESNGRLCTWDFIESKDSVSV
                     LLYHKELESFIFVRQFRIPLWYHQMHDKDYVKDDDMGYTIELCSGLVDKKLSLEEIAK
                     EECIEELGYAPKNLEKIGDFYTGFGSGVSKQSFYFVEVDEKDKISSGGGVDDEEIEAV
                     YVKVQDFEKKCKNMIRTPLLDFAYMWFLKEKWGKLKII"
     gene            complement(2814..3911)
                     /locus_tag="ACHFOB_001547"
     CDS             complement(2814..3911)
                     /locus_tag="ACHFOB_001547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN5800325.1"
                     /translation="MFGSKINHSDLQKLEEENKNLAHKIEKFQSENLELKNKITSLEQ
                     AALESKLKTDLLNVLLTGVLKNITIVQGDMLENVNKAEVISSYSKTSLAEMDELNHIA
                     NSINASLGDITESANKTRDVAGTLHRSVDEITNVINLIKDVSDQTNLLALNAAIEAAR
                     AGEHGRGFAVVADEVRKLAEKTQKATTEVEMNINLLKQNANEMYTQSEQVEKISIDSN
                     AHIMSFSEKFTHLVNEAHSTNSNAVGIASEAFVSLAKLDHIAFKLNGYKEIFSKSGKQ
                     LADHTSCRLGKWLASTGKERFGQNKSFLKINEPHEKVHENMNNAITIANTEDISKDIT
                     QHSIINKCEVAENASLDLFNVFKEMLDESDH"
     gene            complement(3921..4136)
                     /locus_tag="ACHFOB_001548"
     CDS             complement(3921..4136)
                     /locus_tag="ACHFOB_001548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcH family protein"
                     /protein_id="HFN5800326.1"
                     /translation="MLHEYRELMSELKGKDAHFDKLFDRHNELDDMIKDAEEGRTSLS
                     SMEISTLKKEKLHVKDELSQYLANYKK"
BASE COUNT         1414 a          541 c          756 g         1518 t
ORIGIN      
        1 atcaaaataa ttatttttaa aggaattaat ttgactcaaa ttaaaaatat gaaatttaaa
       61 aaaagtttac tgtgtttttt aattttatct ggagctttgt taaaagcaga agaaaaatat
      121 caacttaatg atgttgtggt tagtgctagt ggttttgaac aagatttggt tgatgcgcct
      181 gctagtattt ctatcattac aaaagaagag cttgaaaaaa agccaattaa ggatataggg
      241 gaggctatag gagatattcc aggtgtagat gtgactatga ataaaacagg cacttatgat
      301 tttagcatac gaggttttgg tagttcttat actctagttt taattgatgg aaaacgtcaa
      361 agtgttgcaa atgggtttta tgataatggt tttagtggca gtgagtcagg atatctacca
      421 cctttgtcta tgatagagcg tattgaggtt atacgtggtc cagcttctac actttatggc
      481 agtgatgctg taggcggtgt gataaatatt atcactaaga aaaatcctga taagactgag
      541 gcgaatatag aatttaacac tcttttgcaa cagcactcta atcactatgg caatgctggg
      601 ggatttaacg cttatgtggc aactcctttg attgaagata tattatcaat ttctgcaagg
      661 ttgaagtatt atgataaggc agcttctgat ttaaaatggc ctacaccggt ttggaataat
      721 ggcaaccaaa gacctgataa ttatcaaatt gctagtcata gtccaggtgc ttttactagt
      781 ttaggttttg gttctaggct taattggaca gtagatgata aaaataatat atattttgat
      841 atagaacgat atattaatga aatttcagtg aattctacaa gtagtagggc tattaaaagt
      901 gaaagacaac tttttaagga taatattgtt ttgaatcatg atggtaacta tgattttggt
      961 tcaactaact catatttaca atatggtagc actaaggata aggagctgca tagccaaatt
     1021 tgggtaggag aaggtaaggt tgttttacct tggaatttag gtcaatacgg taatttagta
     1081 aatacctttg gtgcaaggat tgattatgag atattaaaaa atgatcaagc aagcgcaggt
     1141 agtcaaataa gaggtaaaaa tcttgatcaa accacggttg cgctttatgg ggaaaatgag
     1201 tattttatag ccgatgattt gatttttact acaggtttgc gttatattta tagcgatttg
     1261 tttgattctg aatttacgcc tagggtttat ttggtttatc acttaaatga taatatagcc
     1321 ttgaaaggag gtgtttcaaa aggctataaa actcctgctg ccaagcagtt gacaaatgga
     1381 tattataatt atgccaataa taatgcttat tttggaaacc ctgacttaaa accagaagaa
     1441 agtataaatt atgaattggg tgttgatttt atggtatttg attttgcaca ttattctatt
     1501 acaggattta ttactgattt tacaaatcaa atcagtagtg aagatttaac aggtatgcaa
     1561 aatgatatta attgtagcaa tggcattgtt tgtaagcgtc ctattaatct tggaaaaacg
     1621 cagactaaag gtatagaatt tgcatttaat accaaaactt acaatggctt tagcctaaat
     1681 tcaagttata cttttatgga taatcgctac aaagatggtc aaaaaaattg gtttggtggt
     1741 gatagaatag aaaatttacc aagacatata gcaatgttaa aattaaacta tgagcgaggt
     1801 aaatttagtt cctatataaa aacacgagca agacttgatg ctatagctaa agcaaaaggt
     1861 ggcggtaatg gtagtctgcc atggcaaaaa tataagcctt tttatatagt agatttaggg
     1921 ataaattata aaatcaataa gcaatctagc ttaagttttg cagtgcaaaa tctttttgat
     1981 aaaaatttct ttaatccgca agttacaaga tgggatgggg ctaatcctgc tggatatgca
     2041 aatcgctatc aagattatac agaaggaaga agtttttggt taagttataa atatgatttt
     2101 taatttttta aggctttaat cacctttata ttttcaaaaa agcaaaaata aagtacaatg
     2161 tgaaaaataa ataaaaggtt ttattatggc gtttaaaaat ttaaaagaac tttcttttga
     2221 aaaatcaaat tatattaagc ctaagagatt tgcttatgaa agtaatggta ggctttgcac
     2281 ttgggatttt atagaatcta aagatagtgt ttcagtgctt ttgtatcata aagaattaga
     2341 aagttttatt tttgtacgcc aatttcgtat accactttgg tatcatcaaa tgcatgataa
     2401 agattatgta aaagatgatg atatgggcta tactatagag ctttgttctg ggcttgtgga
     2461 taaaaaatta tctttagagg aaatagcaaa agaagaatgt atagaagaac taggatatgc
     2521 tcctaaaaat ttagaaaaaa taggagattt ttatacaggg tttggttcag gtgtaagcaa
     2581 gcaaagcttt tatttcgtag aagttgatga aaaagataaa atttcttctg gaggtggagt
     2641 tgatgatgaa gagattgaag ctgtttatgt taaggtgcag gattttgaaa aaaaatgtaa
     2701 aaatatgata agaacgcctt tgcttgattt tgcttatatg tggtttttaa aggaaaagtg
     2761 gggaaaatta aagattattt aggttaaacc ttaaaaaggt tcaacctagg attttaatga
     2821 tctgactcat caagcatttc tttaaataca ttgaaaagat caagcgatgc attttcagca
     2881 acttcgcatt tattaattat gctatgttga gtaatatctt tgctaatatc ttctgtattt
     2941 gctattgtta tagcattatt catattttca tgaacttttt catgtggctc gttaattttt
     3001 aagaagcttt tattttgccc aaatctttct tttcctgtgc tagcaagcca ttttcctaag
     3061 cgacaagatg tatgatcggc taattgcttt cctgatttgg aaaaaatttc tttataacca
     3121 tttaatttaa aagctatatg atctagtttt gctaaagata cgaaagcttc tgaagcgata
     3181 ccaactgcat ttgaattagt agaatgcgct tcatttacta agtgagtaaa tttttcggaa
     3241 aaactcataa tatgagcatt agaatctata gaaatttttt caacttgctc actttgagta
     3301 tacatttcat ttgcattttg ctttagaagg ttgatattca tttcaacttc tgtggttgct
     3361 ttttgtgttt tttcagctag ttttcttact tcatcggcaa caacagcaaa accacgccca
     3421 tgttcacctg cacgtgcagc ttctatggca gcgttaagag ctaaaagatt ggtttgatcg
     3481 gaaacatctt taattagatt aattacatta gtaatttcat ctacacttct atgcaatgtt
     3541 cctgcaacat ctcttgtttt attggctgat tctgtaatat cccctaagga agcattgata
     3601 gaattagcaa tatggttaag ttcatccatt tcagcaagag aagttttaga atagctagag
     3661 ataacttctg ccttatttac attttctaac atatcgcctt gaacaatagt aatatttttt
     3721 aaaaccccag ttaataaaac atttaaaaga tctgttttaa gtttagactc taaagccgct
     3781 tgttctaatg atgtaatttt attttttaat tctaaatttt ccgattgaaa tttttcaatt
     3841 ttatgtgcaa gatttttatt ttcttcttca agtttttgaa gatcagaatg gtttatttta
     3901 cttccaaaca ttgttttgcc ttatttttta taatttgcta gatattggct aagttcatct
     3961 tttacatgaa gcttttcttt ttttaaggtt gaaatttcca tgctgctaag agaagttcta
     4021 ccttcttctg catctttaat catgtcatca agttcattat gacgatcaaa tagtttatca
     4081 aaatgagcat ctttaccttt tagctctgac attaattctc tatattcatg tagcataaac
     4141 tctccttgta ttagtgaaat ttaaaattca tttaacaagg tattttacac tattaaaaga
     4201 tatttttggc ttaaaaaata ataaaatta
//
LOCUS       DAZBIH010000115         4176 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.116, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000115 DAZBIH010000000
VERSION     DAZBIH010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4176)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4176)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4176
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.116"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..459)
                     /locus_tag="ACHFOB_001549"
     CDS             complement(<1..459)
                     /locus_tag="ACHFOB_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004276999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN5800327.1"
                     /translation="MLLQNGAILIADAHENEQRKGFWEFLQALKKGKISTPQLILMGD
                     IFDLLIGEISATHEFAKPYIELLEELALKIEIIYLEGNHDFNLSCFFKRVKIFNLQEQ
                     PIKLNLHTSKGNNLVLNNAFIKLAHGDIFLPPLLQFTLKTLRNHYLLIFLN"
     gene            complement(469..954)
                     /gene="greA"
                     /locus_tag="ACHFOB_001550"
     CDS             complement(469..954)
                     /gene="greA"
                     /locus_tag="ACHFOB_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0070063 - RNA polymerase binding [Evidence
                     IEA];
                     GO_process: GO:0032784 - regulation of DNA-templated
                     transcription elongation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HFN5800328.1"
                     /translation="MQKEPMSQFGYDKLAAELKDLKDNQRPAVVIEIDTARSHGDLKE
                     NAEYHAAREKQALIESRIAELSDLLARAQVIDPSSYEHDSVKFGSSVVIIDLDTEKES
                     KYTLVGICEGDLDKGYISIASPIAKAMLGKKEGDDFKVRLPKGESEFEILSINYEPLK
                     F"
     gene            complement(966..2060)
                     /gene="lpxB"
                     /locus_tag="ACHFOB_001551"
     CDS             complement(966..2060)
                     /gene="lpxB"
                     /locus_tag="ACHFOB_001551"
                     /EC_number="2.4.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008915 - lipid-A-disaccharide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009245 - lipid A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipid-A-disaccharide synthase"
                     /protein_id="HFN5800329.1"
                     /translation="MKTFLVCALEPSANLHLKEVLKAYKKDFGEFELHGIYDESLCKE
                     FDLNSKPLYSSHEFSAMGFIEVLPLIFKAKKAIKELINLSFAQKINGILCIDSPAFNI
                     PFAKALKKAGSKIPRIYYILPQVWAWKKGRIPIIESHFDILASILPFDNQFFNKSTYV
                     GHPLLDEIKEFKNQEDINHTFSKKDDEKTIAFLPGSRRSEIRRLMPIFKELSQKFKGE
                     KILCVPSFNLEKLEIYGDISEFKIESNTPKVLKKADFAFICSGTATLEAALVGTPFVL
                     TYKAKAIDIFIAKLFVKLKHIGLANIFCDFAKKEALNPEFLQDKVNVLNLYEAYNKYD
                     YKAFFAKVDFLKEYLQFGSAKNLAKILSEI"
     gene            complement(2157..2909)
                     /gene="peb3"
                     /locus_tag="ACHFOB_001552"
     CDS             complement(2157..2909)
                     /gene="peb3"
                     /locus_tag="ACHFOB_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AcfC family glycoprotein adhesin PEB3"
                     /protein_id="HFN5800330.1"
                     /translation="MKKIITLFGACALAFSMANADVNLYGPGGPHTALKDIASKYSEK
                     TGVKVNVNFGPQATWFEKAKKDADILFGASDQSALAIASDFGKDFNVSKIKPLYFREA
                     IILTQKGNPLKIKGLKDLANKKVRIVVPEGAGKSNTSGTGVWEDMIGRTQDIKTIQNF
                     RNNIVAFVPNSGSARKLFAQDQADAWITWIDWSKSNPDIGTAVAIEKDLVVYRTFNVV
                     AKEGASKETQDFIAYLSSKEAKEIFKKYGWRE"
     gene            complement(3173..4069)
                     /locus_tag="ACHFOB_001553"
     CDS             complement(3173..4069)
                     /locus_tag="ACHFOB_001553"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800331.1"
                     /translation="MRTWSLSGVFIGYMGYYLVRNNITLANWYPKKERGIYTAVWNIS
                     HNIGGGIVAPIVSLSGFALAALLGVSMANFNETYWHMNHFYTPAACAVIISLYALYAV
                     KGNPKNEGLVDITEINEMRGIKTEEIKAIETPNLSSFEIFYHYVLKNKNAWYVAWMDT
                     FVYMVRFGLISWLPIYLLETKGFNKEQIGIAFWLFEWAAIPSTLLAGYISDKIFKGYR
                     MPPAIGAIVIIFFMIIGYFTSNNLYMVIFFAAMAGCLVYIPQFLASMQTMEVVPAFAV
                     ESCVGLHGFMSYVVGASLGTKA"
BASE COUNT         1410 a          747 c          558 g         1461 t
ORIGIN      
        1 attcaaaaat ataagcaaat aatgatttct taatgtttta agagtaaatt gtaaaagagg
       61 tggtaaaaaa atatctccgt gagctaattt tataaaagca ttatttaaaa caagattatt
      121 acctttactt gtatgcaaat taagctttat gggctgctct tgtaagttaa aaatttttac
      181 ccttttaaaa aaacaagaaa gattaaaatc atgattgcct tctaagtaga taatttcaat
      241 ttttaaggcc aattcttcta aaagttctat gtaaggttta gcaaattcat gtgtagcaga
      301 gatttcgcct ataagcaaat cgaaaatatc acccataagt atgagttgag gggtggaaat
      361 tttacctttt tttaaggctt gtaaaaattc ccaaaatccc tttctttgtt cattttcatg
      421 agcatccgcg attaaaatcg ccccattttg tagtaaaatt ttttatcctt aaaatttcaa
      481 aggctcataa tttatagaaa ggatttcaaa ttcactctca ccttttggca aacgcacttt
      541 aaaatcatct ccttcttttt tcccaagcat agcttttgct attggagatg cgatggaaat
      601 ataaccctta tctaaatctc cttcgcaaat tcctactaaa gtatatttac tttctttttc
      661 tgtatccaaa tctatgatca caacacttga accaaatttc acactatcat gttcatagct
      721 tgaaggatcg atcacttgag ctcttgctag caagtcacta agctccgcaa tacgactttc
      781 tatcaaagct tgtttttctc ttgcagcatg gtattccgca ttttctttca aatccccatg
      841 actccttgct gtatcgattt ctattacaac ggcagggcgt tgattgtctt ttaaatcttt
      901 taattctgcg gctaatttat catagccaaa ttgactcatt ggttcttttt gcatgattta
      961 tccttttata tttcgcttag gatttttgct aaatttttag cacttccaaa ttgtaaatat
     1021 tcttttaaaa aatcaacttt agcaaaaaat gccttataat catatttatt gtaagcttca
     1081 tataaattta aaacattgac tttatcttgt aaaaattcag gatttaaagc ttctttttta
     1141 gcaaaatcac aaaaaatatt tgcaagtcct atgtgtttta attttacaaa aagttttgcg
     1201 ataaaaatat caatcgcttt tgctttgtaa gtaagaacaa aaggagttcc cactaaagct
     1261 gcttctaaag tagctgttcc actacaaata aaggcaaaat cagctttttt aagcactttt
     1321 ggagtgttac tttctatttt aaattcacta atatcaccat aaatttctaa tttttcaaga
     1381 ttaaacgagg gaacacaaag aattttttca cccttaaatt tttgagaaag ttctttaaaa
     1441 ataggcatca aacgcctaat ttcactacgc cttgaacctg gtaaaaaggc tatagttttt
     1501 tcatcatctt tttttgaaaa tgtatgatta atatcttctt gatttttaaa ttcttttatc
     1561 tcatctaaaa gcggatggcc tacataagtg cttttgttaa aaaactgatt atcaaagggt
     1621 aaaatagaag ctaaaatatc aaaatgactt tctatgatag gtatgcgacc ttttttccat
     1681 gcccaaactt gaggtaaaat ataataaatg cgtggaattt tactgcctgc tttttttaaa
     1741 gccttggcaa aaggtatgtt aaaagcgggc gaatctatac ataaaatccc atttattttt
     1801 tgagcaaagc ttaaatttat aagttctttt atagcttttt ttgctttgaa aatcaaaggt
     1861 aaaacttcta taaaacccat agcactaaac tcatgtgagc tataaagtgg tttagaattt
     1921 aaatcaaatt ctttacataa actctcatca taaatcccat gaagttcaaa ttcaccaaaa
     1981 tcttttttat aagcttttaa aacttctttt aaatgcaaat ttgctgaagg ctctaaagca
     2041 caaactaaaa aggttttcaa aaaatttcct tatcaatatt ttaaacattt tatcttattt
     2101 tggcttaatt aaaagaagtt atgcaagaat acacgctaaa aagcgtgtat gaaggtttat
     2161 tctctccagc cgtatttttt aaaaatttct ttagcttcct tagaacttaa ataagcaata
     2221 aaatcttgtg tttctttgct cgcaccttct ttagctacca cattaaaagt tctataaaca
     2281 accaaatctt tttctatagc tacggcagtt cctatgtcag gattgctttt tgaccagtca
     2341 atccaagtga tccaagcatc ggcttgatct tgtgcgaaaa gctttcttgc acttccacta
     2401 tttggaacaa aagctacgat attgtttcta aaattttgta tggtttttat atcttgagtt
     2461 ctacctatca tatcttccca aactcccgtt ccagaagtat tgctctttcc agcaccttca
     2521 ggtacaacga ttcttacttt tttattagcc aaatctttta aacctttgat ttttaaagga
     2581 ttgccttttt gagtaagtat gatggcttct ctaaaataca aaggcttgat tttactcaca
     2641 ttaaaatctt ttccaaaatc acttgctata gctaaagccg attgatctga agcgccaaat
     2701 aaaatatctg catctttttt agccttttca aaccaagtcg cttgagggcc aaaatttaca
     2761 tttactttaa cgcctgtttt ttcgctatat ttacttgcta tatcttttaa ggccgtgtgt
     2821 gggccacctg gtccgtaaag atttacatct gcatttgcca tactaaaagc taaggcacat
     2881 gcgccaaata aagtaataat ttttttcata gtatttcctt ttatgataaa tttttattga
     2941 ttgaaggtaa gattttagaa attatatgtt aataaatagt tataatgtaa caaaaatatt
     3001 attaaaatct aacttttgct tggtattttt gcaagcaaaa gttaaaattg ttattgatgc
     3061 ttctttttag cgctaaaatg acataaagta gaacaaagta tacaaagaat acaagcacta
     3121 aggagcatga taagaccagc attccaacta ccatagtaat ccacagccca acctatgctt
     3181 ttgttccaag tgaagcgccg actacataac tcataaagcc atgaagtcct acacaagatt
     3241 ctactgcaaa agcaggaacg acttccatag tttgcatact tgctaaaaat tgtggtatat
     3301 agactaaaca ccccgccata gctgcaaaga aaataaccat ataaagatta tttgaagtaa
     3361 aatatccaat aatcataaag aaaataatca ctatggcgcc tatagcagga ggcattctat
     3421 agcctttaaa aattttatct gaaatatatc ctgcaagtaa agtagaaggt atagcagccc
     3481 attcaaaaag ccaaaaggca atacctattt gttctttatt aaagcctttt gtttctagca
     3541 agtaaatagg aagccaagaa ataagcccaa aacgcaccat ataaacaaaa gtatccatcc
     3601 aagccacata ccaagcattt ttgtttttaa gtacataatg ataaaaaatt tcaaaactgc
     3661 ttaaatttgg agtttctata gctttgattt cttctgtttt aatccctcgc atttcattga
     3721 tttcagtaat atcaaccaaa ccttcatttt taggatttcc tttaactgca taaagcgcat
     3781 aaagactaat gataactgca caagcagcag gagtataaaa atgattcatg tgccaatatg
     3841 tttcgttaaa atttgccata ctcacaccca ataatgctgc taaagcaaaa cctgaaagcg
     3901 aaactatagg agcaactatc ccgcctccta tattatgtga gatattccaa acggccgtgt
     3961 aaattccccg ctctttttta ggataccagt ttgcaagagt gatattattt cgcacaagat
     4021 aatatcccat atatcctata aaaaccccac ttaaactcca agttctcatt ttgtaatatc
     4081 taggtaaaat ttcctaaaga ggaaatttaa tagcttttgc cttaggtttg aaaaaatcaa
     4141 acatatttaa accatcctta ctaactttat attttt
//
LOCUS       DAZBIH010000116         4168 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.117, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000116 DAZBIH010000000
VERSION     DAZBIH010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4168
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.117"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1153
                     /gene="ftsW"
                     /locus_tag="ACHFOB_001554"
     CDS             <1..1153
                     /gene="ftsW"
                     /locus_tag="ACHFOB_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="putative lipid II flippase FtsW"
                     /protein_id="HFN5800332.1"
                     /translation="KRLFYLSCILITIGIVFSYSLTAFTVLFLDYSEFHFFIRQLFFG
                     ISGILIMFFISRLDPDKALSKKIILAILIISFIFIIILPFLPSALATASGGAKRWIRL
                     GPLSISPVEFFKIGLIYFLAWSYTRRIDDSKKAIRHEALILLPYCILASIVIGYIYIT
                     QNDLGQSVISFFLILALAFFAGASKRLFAFGTLIIMMIGIMVIFSNQRRIQRIASWWG
                     NIQDAFLPMLPDWLANALRVSSNTEPYQISHSLNAIAHGGMFGEGLGLGTFKLGFLSE
                     VHTDFVLSGITEEIGLLGLGVICYIYLWMILRIFRIAGRCEAKQDFIFCSGIALLLLF
                     SFFMNAFGIISLTPLKGVAVPLLSYGGSSMWAICIGIGYVLMISKKVKL"
     gene            1150..2178
                     /gene="murG"
                     /locus_tag="ACHFOB_001555"
     CDS             1150..2178
                     /gene="murG"
                     /locus_tag="ACHFOB_001555"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050511 -
                     undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase activity [Evidence
                     IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HFN5800333.1"
                     /translation="MTIALTGGGTGGHLAIVRCLLESAIKKNIECVYIGSQNGQDKAW
                     FENEVRFKEKFFLSSKGVVNQSKFDKISSLLHTLKLSKDCREIFKKYHIQAVFSVGGY
                     SAAPASFAALFSHLPLFIHEQNSKSGSLNMLLKPFATKFFSAFEKEISPYPVADKFFD
                     NARIRKELKNIIFLGGSQGAQFINELALNLAPKLQEQNIKIIHQCGKNDFEKCKKHYQ
                     SLNIQADIFDFSLNLEEKMKNADLAISRAGASTLFELCANTLPTIFIPYPYAAKNHQY
                     FNAKFLQDQALCQIFMQNSINLDEFFKSILKLNLENISTRLQNITQKNGADMLIQKAL
                     FDNLTFIR"
     gene            complement(2149..3305)
                     /locus_tag="ACHFOB_001556"
                     /pseudo
     CDS             complement(2149..3305)
                     /locus_tag="ACHFOB_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344435.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
     gene            complement(3313..4164)
                     /locus_tag="ACHFOB_001557"
     CDS             complement(3313..4164)
                     /locus_tag="ACHFOB_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5800334.1"
                     /translation="MKKYVLSLALLGSLLGASELKYQEFDGFKSPESIFVDKNYVYIS
                     NVGEKLEPLAKDNDGFISKLDKNGKVLEHKFLTHLNAPKGMMEIGKTLYVVDIDVLRG
                     FDLKTKKEIFNLPIKGAIFLNDIEKLDDNTLLVSDTGTGLILKVDLKTKQYDELLKLD
                     LAKFGGPNGLYLDRKKHKLFIAGYHPDGVSGGVVMAYDLNTKELSIIKNEKESYDGIV
                     PYKDGLLVSSWGNNLNGYIYNLDNVKSVKLELPLMKGPADIFIEGNILWIPKMAEGKI
                     FKVELNK"
BASE COUNT         1493 a          680 c          575 g         1420 t
ORIGIN      
        1 taaaagatta ttttatttaa gttgtatttt aatcaccata ggaatagtat tttcatactc
       61 tcttacagct tttactgttc tttttcttga ctatagcgag tttcattttt ttattcgtca
      121 gctttttttt ggaattagtg gcatacttat aatgtttttt atttctcgat tggaccctga
      181 taaagcactt tctaaaaaaa ttattttagc tattttgatt atttctttta tctttatcat
      241 cattttgcca tttttacctt ctgcattagc aacagctagc ggaggagcta aacgctggat
      301 acgcttaggc ccactctcta tctctcctgt ggaatttttt aaaataggat tgatttattt
      361 tttagcatgg agctatacaa ggcgtattga tgatagcaaa aaagctatca gacacgaggc
      421 tttaattctt ctgccttatt gcatcttagc ttctatagtt ataggatata tttatatcac
      481 tcaaaacgat ttaggacaaa gcgtaatttc tttctttttg attctggctt tagctttttt
      541 tgcaggagct agtaaaaggc tttttgcttt tggaacttta attattatga tgataggtat
      601 aatggtaatt tttagtaacc aaagaagaat tcaaagaatc gcttcttggt ggggaaatat
      661 acaagatgct tttttaccta tgcttcctga ttggctggca aatgctttaa gagtaagtag
      721 caataccgag ccttatcaaa tttcacactc tttaaatgct atagcccatg gaggaatgtt
      781 tggcgaaggc ttaggacttg gaacttttaa attaggcttt ttgagtgaag tgcatactga
      841 ctttgttctt tcaggaatta ctgaagaaat aggactttta ggtcttgggg ttatttgcta
      901 tatttatctt tggatgattt taagaatttt tagaattgca ggaagatgtg aagctaaaca
      961 agattttatt ttttgttcag gcatagcctt gcttttactt ttttctttct ttatgaatgc
     1021 ttttggtatt atttctctta ctccactaaa aggtgtagcg gttccacttt taagctatgg
     1081 aggaagttca atgtgggcaa tttgcatagg cataggatat gtattaatga tttcaaaaaa
     1141 ggttaaatta tgacaatagc tttaacaggt ggtggaactg gaggacattt ggccatagtg
     1201 cgttgcttat tagaaagtgc gattaaaaaa aatatagaat gtgtatacat aggcagtcaa
     1261 aatggtcaag ataaagcttg gtttgaaaat gaagtacgct ttaaggaaaa atttttttta
     1321 agttctaaag gagtggttaa tcaaagcaaa tttgacaaaa tcagttcttt actccacacc
     1381 ttaaaactct ccaaagattg tagagaaatt tttaaaaaat accacatcca agccgttttt
     1441 agtgtaggtg gatacagtgc agctcctgca tcttttgcgg ctttattctc acatttgcct
     1501 ctttttatac atgaacaaaa ttcaaaaagc ggctctttaa atatgctttt aaaacctttc
     1561 gctacaaaat tttttagcgc ctttgaaaaa gaaattagcc cttatcctgt agcagataaa
     1621 ttttttgata atgctaggat tcgcaaagaa ttaaaaaata ttattttctt aggaggatca
     1681 caaggagctc aatttatcaa cgaactagct ttaaatttag caccaaaact tcaagaacaa
     1741 aatatcaaaa tcatccatca atgtggaaaa aatgattttg aaaagtgcaa aaaacattat
     1801 caaagcttaa atatccaagc tgatattttt gattttagtt taaatttgga agaaaaaatg
     1861 aaaaatgcag atctagctat atcaagagca ggtgcaagta ctctttttga actttgtgct
     1921 aatactttgc ccactatttt tataccttat ccttatgcag ctaaaaatca tcaatacttt
     1981 aatgctaaat ttttacaaga tcaagcttta tgtcaaattt ttatgcaaaa ctctattaat
     2041 cttgatgaat tttttaagtc aatattaaaa ctaaatctag aaaatatttc tacaagattg
     2101 caaaatataa cccaaaaaaa tggcgcagat atgctaatcc aaaaagcttt atttgataat
     2161 ttgactttta taagataaat atccaaagat atttactaaa attccaacaa aaactaacat
     2221 caaaatagca aatgaaaaat tttcaaattt gtcatgcaaa aaacctataa tccattgtcc
     2281 ttgtgctgca attaaatatc caaaaccctg agctaaagca gaaagtctcg ctgctatttg
     2341 agcattagag cttttttgtg caataaaaag caacgcaatg ccaaaaactc caccccatgg
     2401 aaaacccatg ataaaagcac tgataataat agaaatttta ctatcaaaaa taaagagcat
     2461 accaaaagcg atcacataca tactgcacaa acctgctatg taaaaagtat gtaaattttg
     2521 tcttaatttt cctaaaagta aagggccaaa aagagacact ggagctgcaa caagttgagc
     2581 aaataaaacc ttacttgtag aaaattcttt atcaaatcct ttttctacaa caatttgaac
     2641 ataccaaaaa aacaaagaat aagctaaaaa actttgaaat cccataaaaa gagtaatttt
     2701 ccaagttgtt aaatttataa aaagattgat ttttttatga gtttttttct taaatacgaa
     2761 aaaatctacc atttttagct tgaggatagt aaactactaa agctacaaaa gaaaaaataa
     2821 cccagaaaaa catagctcca gctaaatcaa atacactaag caaaggtata gctaaagcaa
     2881 tacccataat cgaagaaata ctcaaaacaa gactataaat tcccattata cttgccattt
     2941 tttttggaaa tttttcttta ataaaactag gaagtaaaac atttgcaatt gctataccac
     3001 agcccattgc taacattcct aaaaataagc catatatacc aaaataagaa cgaataattt
     3061 cgcctaaaaa aattaaaaaa attccaaaaa caatagcacg aataggagaa aaatacccca
     3121 caataaaaga aatacttcca aaagctatca aaggaagact tgtaagtatg cccgctacgg
     3181 ttgagtttaa ataatactta tctttaataa tatcaataat aagccccact gcagtaattg
     3241 ggggctctaa gattaaaagc tacaataata acaataatcc aaaatatctt tttaaaagaa
     3301 gccataaaag ccttatttgt taagttctac tttgaatatt ttaccttctg ccatcttagg
     3361 aatccataaa atattacctt caataaatat atctgcagga cctttcatca aaggaagttc
     3421 aagttttaca gatttaacat tatctaaatt ataaatatat ccatttagat tatttcccca
     3481 agaacttacc aataaaccat ctttataagg aactattcca tcataagatt ctttttcatt
     3541 tttaattata ctgagttctt ttgtatttaa atcataagcc attacaacac cgccacttac
     3601 accatcagga tgataaccag ctataaaaag cttatgtttt tttctatcta gatataaccc
     3661 atttggacca ccaaattttg ctaaatcaag ttttaataat tcatcatatt gcttagtttt
     3721 taaatcaacc tttaaaataa gccctgtgcc agtatcgcta accaaaagcg tattgtcgtc
     3781 taatttttct atgtcattta aaaagattgc acctttaata ggtaaattaa aaatttcttt
     3841 tttagtttta agatcaaaac cgcgtaaaac atcgatatct accacataaa gagtttttcc
     3901 aatctccatc atgccttttg gtgcattaag atgggttaaa aatttatgtt ctagcacttt
     3961 gccattttta tcaagcttag aaataaatcc atcattatct ttcgccaaag gttcaagttt
     4021 ttctcctaca ttagatatat aaacatagtt tttatctaca aaaatacttt cagggctttt
     4081 aaaaccatca aattcttgat attttaattc acttgcacca agcaaacttc caagaagcgc
     4141 taaacttaaa acatattttt tcatattt
//
LOCUS       DAZBIH010000117         4129 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.118, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000117 DAZBIH010000000
VERSION     DAZBIH010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4129
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.118"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(9..1229)
                     /gene="pgi"
                     /locus_tag="ACHFOB_001558"
     CDS             complement(9..1229)
                     /gene="pgi"
                     /locus_tag="ACHFOB_001558"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HFN5800335.1"
                     /translation="MLNNILFFKQSEIHTISSYANRINDEVKSGDIGYYHLIDTSLNL
                     IDESLQFIQDKEYVKNIVLVGMGGSSCGVKALRDMLFNEKSNQRELFILDNTSSHSFN
                     KTLEKIKLEESLFLIISKTGSTIEVVSLFKLLIEHFKLDMQELKKYFVFITDKDSKLH
                     QEGENLGIKCFFIPANVGGRFSILSAVGIVPLCFCGYNAKALLEGAKACFEDFFTHKK
                     DEILQKAYHYCTHKNANINVLFSYSDAFKGFNEWYIQLIAESLGKKQGYKRIGLTPIA
                     LIGARDQHSFLQLIMDGPKNKTVTFLKIKDAQKAPIIPDIHFKFLDSLSNKVNLHELL
                     NAQCDATMHALIAENLSVDVIELEKLDAWHAGYLMYYYELFTSTCGVMLGINTYDQPG
                     VEVGKLILKNILNS"
     gene            complement(1223..2047)
                     /gene="galU"
                     /locus_tag="ACHFOB_001559"
     CDS             complement(1223..2047)
                     /gene="galU"
                     /locus_tag="ACHFOB_001559"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003983 - UTP:glucose-1-phosphate
                     uridylyltransferase activity [Evidence IEA];
                     GO_process: GO:0006011 - UDP-glucose metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HFN5800336.1"
                     /translation="MLQTCIFPAAGYGTRFLPATKTLPKEMLPILTKPLIHYGVDEAL
                     EAGMENMGFVTGRGKRALEDYFDISYELEHQISGTKKEYLLDEIRSLINRCTFTFTRQ
                     NQMKGLGDAVLKGRPLVGDEAFGVILADDLCVNEEGLNVMAQMVKIYEKYRCTIIAVM
                     EVPKEQVSNYGVISGNFVEENLIMVNSMIEKPSPDEAPSNLAIIGRYILTPDIFGILE
                     NTKAGKNGEIQLTDALLTQATNGMVLAYKFQGKRFDCGSVEGFVEATNYFYEKSKC"
     gene            complement(2129..4102)
                     /gene="acs"
                     /locus_tag="ACHFOB_001560"
     CDS             complement(2129..4102)
                     /gene="acs"
                     /locus_tag="ACHFOB_001560"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0016208 - AMP binding [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HFN5800337.1"
                     /translation="MLNQNNQELFKPSKEFSRNARIKNLCEYYDLCDEAKEDFEGFWK
                     RQAFEKIEWFSPFSRVLNEDKAPFYKWFEGGTLNVSYQCLDRHMKTRRNKAALIFEGE
                     MGDYEVYTYRRLLHETCKAANLLKKFGVKKGDRVVIYMPMIPETAIVMLACARIGAIH
                     SVVFGGFSPEALRDRIIDAGAKLVVTADGAFRRGKPYMLKPAVDKALSEGCESVEKVL
                     IVIRNNEPIEYIKGRDYVYNELVKNESYKCEPEIMDSEDLLFLLYTSGSTGKPKGVMH
                     ASAGYILWAQMTMEWVFDIKDYDNYWCSADVGWITGHTYVVYGPLACGATTIMHEGTP
                     TYPNSGRWWRMIEEYQISKFYTSPTAIRMLHADAPNEPRKYDLSTLEVLGTVGEPINP
                     SAWKWFYDEIGGTKSPIVDTWWQTETGGHMITPLPGATPLKPGCATLPLPGIFAEVID
                     EEGNKKDEGEDGLLCITKPWPSMIRGIWGNDERYIESYFSQAKKDGKAVYFSGDGAFY
                     DKNGYITITGRTDDVVNVAGHRIGTAEIESAIAKHPSVAESAVVSILDTIKGESLFAF
                     VVLSPASSCDLGGAIETLKELNDILRVEIGPIAKIEKILYTPGLPKTRSGKIMRRILR
                     TIARGEEIKQDISTLEDSKVVETIVKLAKAEFE"
BASE COUNT         1307 a          854 c          550 g         1418 t
ORIGIN      
        1 aattttgatt aagaatttaa tatatttttt aagatcaact ttccaacttc cacaccaggt
       61 tgatcatagg tgttaatccc tagcataaca ccgcaagttg aagtaaaaag ttcataataa
      121 tacatcaaat atcccgcatg ccaagcgtca agtttttcaa gttctatcac atcaacactc
      181 aaattttcag cgattaaagc gtgcatagtt gcatcacatt gagcgtttaa aagttcgtga
      241 agattgactt tattacttaa agaatctaaa aatttaaaat gaatatcagg gataataggt
      301 gctttttgag cgtctttgat ttttaaaaaa gttacagttt tatttttagg tccatccatg
      361 atgagttgta aaaaactatg ttgatctctt gcgccaatga gtgcaatagg agttaaacct
      421 atgcgtttat agccttgctt tttacctaaa ctttcagcaa taagctggat ataccattca
      481 ttaaagcctt taaaagcatc gctatatgaa aaaagtacat tgatattggc atttttgtgt
      541 gtacaataat gataggcttt ttgtaaaatt tcatcttttt tgtgagtaaa aaaatcttca
      601 aaacaagctt tagctccttc taaaagagct ttggcattat agccacaaaa acaaagtgga
      661 actataccta cggctgaaag tatgctaaaa cgacctccta catttgcagg gataaaaaag
      721 catttaatac ctaaattttc accttcttga tgaagttttg aatccttatc ggtaataaaa
      781 acaaagtatt tttttaattc ttgcatatca agtttaaaat gttcaataag aagtttaaaa
      841 agcgatacaa cttctatagt actacctgtt ttgctgatga ttaaaaacaa actttcttca
      901 agcttgattt tttctaaagt cttattaaaa gaatgcgagc ttgtgttatc gagtataaaa
      961 agctctcttt ggttgctttt ttcattaaaa agcatatcac gcaaggcttt tacaccacaa
     1021 cttgaacctc ccattcccac taaaacgata ttttttacat actctttatc ttgaataaat
     1081 tgcaagctct catcgattaa attcaaactt gtgtcaataa gatgataata ccctatatct
     1141 ccacttttta cctcatcatt aatacgattt gcataagaac ttatagtgtg aatttcactt
     1201 tgtttaaaaa aaagtatatt gtttaacatt tacttttctc gtaaaaataa tttgtcgcct
     1261 ctacaaagcc ttctacactt ccacaatcaa agcgtttccc ttgaaattta taagctaaaa
     1321 ccataccatt ggttgcttga gttaaaagcg cgtcggtaag ttgaatttca ccattttttc
     1381 ctgctttagt attttctaaa attccaaaaa tatcaggagt taaaatatat cttcctatga
     1441 tagcaagatt acttggagct tcatcaggac ttggtttttc tatcatagaa ttaaccatga
     1501 taagattttc ttctacaaaa tttccagaaa ttactccata gtttgaaact tgctcttttg
     1561 gtacttccat cacagctatg atggtgcagc gatatttttc ataaattttt accatttgag
     1621 ccataacatt taagccttct tcattaacac acaaatcatc agccaaaatt acgccaaaag
     1681 cttcatcgcc aaccaaaggt ctacctttta aaaccgcatc acctaagcct ttcatttgat
     1741 tttgtcttgt aaaagtaaag gtacaacgat tgatcaaaga gcgaatttca tcaagtaagt
     1801 attctttttt tgtacctgaa atttgatgtt caagttcata agaaatatca aaataatcct
     1861 ccaaagctct ttttccacgc cctgtgacaa atcccatatt ttccattcct gcttctaaag
     1921 cttcatcaac tccataatgg atcaaaggct tggttaagat aggtaacatc tctttaggta
     1981 aagtttttgt tgcaggtaaa aatctcgtcc cataacctgc cgcagggaaa atacaagttt
     2041 gaagcataaa aatttccttt tattttttta tcattatagc ttatttttat gaattttcat
     2101 gcaacaaggc aaagttcttt ttgccttgtt attcaaactc tgccttagct aatttaacaa
     2161 tggtttctac tactttagaa tcttcaagtg ttgaaatatc ctgtttgatt tcttcgcctc
     2221 ttgctatagt tcttaaaatt cttctcatta ttttaccact tctagttttt ggcaaacctg
     2281 gagtataaag aattttttct attttagcta taggtcctat ttctactctt aaaatgtcat
     2341 taagttcttt taaagtttct atagctccgc caagatcaca actggatgca ggacttaaaa
     2401 ccacaaaagc aaacaatgac tcgcccttaa tcgtatccaa aatactcact acagctgatt
     2461 ctgctacact tggatgttta gcaatagcgc tttcaatttc agccgttcct atacgatgtc
     2521 ctgcaacatt aaccacatca tctgttcttc ctgtgatggt aatataacca tttttatcat
     2581 aaaaagcacc atcgccacta aaatatacag cttttccatc ttttttagct tgagaaaaat
     2641 aactttctat atagcgttca tcattgcccc aaattccacg aatcatcgaa ggccaaggtt
     2701 tagttataca aagcaaccca tcttcacctt catctttttt attgccttct tcatcaataa
     2761 cttccgcaaa aatccctggc aaaggcaagg tggcacaacc tggttttaaa ggagtggcgc
     2821 ctggtaaagg cgtgatcata tgcccacctg tttctgtttg ccaccaagta tcgactatag
     2881 gacttttagt tccccctatt tcatcataaa accacttcca agcactagga ttgataggct
     2941 ctccaaccgt tccaagcact tcaagcgtac ttaaatcata ttttcttggc tcattaggtg
     3001 catcagcatg aagcattctt atggcagttg gcgaagtgta gaatttgctt atttgatact
     3061 cttctatcat tctccaccaa cgcccagaat ttggataagt aggagttcct tcatgcatta
     3121 tagtcgttgc cccacatgct aaaggcccat aaactacata agtatgtcct gtaatccaac
     3181 ccacatcagc actacaccaa taattatcat aatctttaat atcaaaaacc cattccatag
     3241 tcatttgtgc ccaaagtata tatcctgcac ttgcatgcat aactcctttt ggcttgcccg
     3301 ttgatcctga agtgtaaagc aaaaacaaca aatcctcact atccataatt tcgggttcac
     3361 acttataaga ctcatttttc acaagttcgt tataaacata gtcccttcct ttaatatatt
     3421 ctataggctc attattgcgt ataactataa gtactttttc tacactttca cacccttcac
     3481 ttaaagcctt atctactgca ggttttaaca tataaggttt gccacgacga aaagcaccat
     3541 cagccgttac tacaagttta gctcctgcat ctataattct atctcttaag gcttcaggag
     3601 aaaaccctcc aaatactaca ctatgaatag ccccaatcct tgcacaagct aacattacta
     3661 tagctgtttc tggaatcata ggcatataaa ttacaaccct atcgcctttt tttactccga
     3721 attttttaag caaattggcc gccttgcaag tttcatgcaa taatcttcta taagtataaa
     3781 cttcataatc ccccatttca ccttcaaaaa tcaaagcagc tttattgcgt cttgttttca
     3841 tatgacgatc aagacattga taacttacat ttaaagttcc accttcaaac catttataaa
     3901 atggagcttt atcctcattt agcactcttg aaaaaggcga aaaccactca atcttctcaa
     3961 atgcttgtct tttccaaaaa ccttcaaaat cttccttggc ttcatcgcat aaatcatagt
     4021 attcacataa attttttata cgagcattac gagaaaattc tttacttggc ttaaaaagct
     4081 cttgattatt ttgattaagc ataaaaactc ctttatggtt gtttttaaa
//
LOCUS       DAZBIH010000118         4110 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.119, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000118 DAZBIH010000000
VERSION     DAZBIH010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4110)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4110)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4110
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.119"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1222
                     /locus_tag="ACHFOB_001561"
     CDS             <1..1222
                     /locus_tag="ACHFOB_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HFN5800338.1"
                     /translation="VAARYLFLCDEDFTILENQAFVFEDKILELGELDNLKKKYPKAK
                     IIKTPKNSVILPAFINPHTHLEFSANSTTLHFGEFLIWLKSVINSRSILNAQAKEELI
                     LQSIKKMQKSGIGTIGEISSFGSDLDPCLKASHKGMRIVFFNEILGTNENQVEDKKQE
                     FLKRFENSLKFKNDFFIPAISIHSPYSTHPSLAYFALDLAKKQNLLASTHFLESKAEN
                     IWLRESKGGFKKWLENFTLHPKPLYTPKDFVKLFKGVRTLFTHCVYLKEYEWLDKNLH
                     SITHCAFSNRLLSQKSLDLKTALKSGLNIHLGTDGLSSNISLSLLDEMRANLLIHKNF
                     DLLELASKLLQMVTLYPARALNLNLGELKKGKIADFSVFELGECDKKQAPLQFILNAK
                     EVDKLFIKGKECKF"
     gene            1210..2106
                     /gene="sppA"
                     /locus_tag="ACHFOB_001562"
     CDS             1210..2106
                     /gene="sppA"
                     /locus_tag="ACHFOB_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006465 - signal peptide processing
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HFN5800339.1"
                     /translation="MQILKSFFKALGCGIKFINTYFKTFVLLLIVIWILMPSANSSSN
                     LANLERIDLKGEIFDSSAVLEKIINAKNDSNIKGVLFVIDSPGGAFAPSMELALAIKD
                     LKIKKPVLVYASGTMASGSYLAGVGANKILANPASFIGSIGVIMQGADLSGLANKLGI
                     KEQTIQAGEFKSAGTFARAWNENERNFLQGLIDQSYDLFTGFVAKERALDLNKKDQWA
                     NARVFLAAKAKELGLIDELSNYENAKKELEKLANVSNPVWKEEDKIDKFLNRLEGQTS
                     SLISKSLIEIVYKTNSSFISAR"
     gene            2185..3216
                     /locus_tag="ACHFOB_001563"
     CDS             2185..3216
                     /locus_tag="ACHFOB_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj0069 family protein"
                     /protein_id="HFN5800340.1"
                     /translation="MKKNIVFFEVKGGSDKGEDGYRKDTMPMVNALKAKGWNAEVIFF
                     EVGKKDEIYKYVKENFDGYVSRINPGNLKEENEYFDMLRKLCADKLVGMPHPDAMIGY
                     GAKDALTKLADTDLVPSDTYAYYDIKTFKENFPKSLAKGERVLKQNRGSTGEGIWRVS
                     VEGNVSGDSLPLNTKIKCTEAKDNHVEHRELGEFMDFCEQYIIGDNGMLVDMTFLPRI
                     KEGEIRLLMLYNTPVNVVHKKPAEDADAFSATLFSGAKYRYDKPEDWKTLVDMFLGEL
                     PKVREKLGNYDLPLIWTADFILDTDEKGNDKYVLGEINCSCVGFTSHLELADEVASNI
                     INIVSKTKA"
     gene            complement(3458..3808)
                     /locus_tag="ACHFOB_001564"
     CDS             complement(3458..3808)
                     /locus_tag="ACHFOB_001564"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800341.1"
                     /translation="MSYLIQNIKTTNDLKEKLYTVSKKWLLEHILYKDVKVEQYRRSS
                     LTSEDDGEVSFEEVKEEKDDENTVYLYTCECVEQMHDVPFGIHQKIQLKGVKFKCKKC
                     KEAIQFYKKYSENF"
     gene            complement(3784..4080)
                     /locus_tag="ACHFOB_001565"
     CDS             complement(3784..4080)
                     /locus_tag="ACHFOB_001565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002871941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HFN5800342.1"
                     /translation="MLLDKLIPTWNEKYSIHNTMIDIQHQKLCELASKVESAVYKFVK
                     REELKEILTELFNYMKEHFSNEEDYMQEIHYPYLNEHKIMHKISFVICLILYKT"
BASE COUNT         1396 a          507 c          726 g         1481 t
ORIGIN      
        1 agttgctgca agatatcttt ttttatgcga tgaagatttt acaatactag aaaatcaagc
       61 ctttgttttt gaagataaaa ttttagaatt gggtgaattg gataatttaa aaaaaaaata
      121 tcctaaggct aaaatcatca aaacacctaa aaattcggtt attttacctg cttttataaa
      181 tcctcacaca cacttagaat ttagtgcaaa ttcaacaact ttacattttg gagaattttt
      241 aatttggctt aaaagtgtta taaattctcg ttccatatta aatgcacagg ccaaagaaga
      301 attaatactt caaagcatta aaaaaatgca aaaaagtggt ataggcacta taggtgaaat
      361 ttcaagtttt gggagtgatt tagatccttg cttaaaggct agtcacaagg gtatgcgtat
      421 agtatttttt aatgaaattt tgggtacaaa tgaaaatcaa gttgaagata aaaaacaaga
      481 atttttaaaa agatttgaaa attctttgaa atttaaaaat gattttttta tcccggcaat
      541 ttcgattcat tctccttatt caactcatcc tagtttggct tattttgctc ttgatttagc
      601 taaaaagcaa aatttactag ctagtacgca ttttttagaa agtaaggctg aaaatatctg
      661 gcttagagag tctaaagggg gttttaaaaa atggcttgaa aatttcacac ttcatcctaa
      721 gcctctttat acaccaaagg attttgttaa actttttaaa ggagtaagga ctctttttac
      781 gcattgtgtt tatctaaaag aatatgaatg gttagataaa aatttacatt ctattacaca
      841 ttgtgcattt tcaaatcgcc ttttaagtca aaaaagctta gatttaaaaa cggctttaaa
      901 aagtggatta aatatccatt taggaaccga tggacttagc tcaaatattt cattgtcttt
      961 acttgatgaa atgcgcgcga atttgcttat acataagaat tttgatttat tagagttagc
     1021 ctctaagctt ttgcaaatgg taacacttta tcctgcaagg gctttaaatt taaatttagg
     1081 agagcttaaa aaaggtaaaa ttgctgattt tagcgtattt gagctaggag aatgtgataa
     1141 aaagcaagct cctttgcagt ttattttaaa tgctaaggaa gtggataaat tatttataaa
     1201 aggaaaagaa tgcaaatttt aaaatcattt tttaaggctt taggatgtgg tataaaattt
     1261 atcaatactt attttaaaac ctttgtttta ttgttgattg ttatatggat tttaatgcct
     1321 agtgcaaatt caagctctaa tcttgcaaat ttagaacgca ttgatttaaa gggtgaaatt
     1381 tttgatagct ctgcggtttt ggaaaaaatt atcaatgcta aaaatgatag caatatcaaa
     1441 ggagtgcttt ttgttataga ctctcctggt ggagcttttg ctcctagtat ggaactagct
     1501 ctagctataa aggatttaaa aattaaaaag cctgtgcttg tttatgcaag cggaactatg
     1561 gcaagtggaa gttatttagc aggagttgga gcaaataaaa ttttagccaa tccggcaagt
     1621 tttataggct ctatcggtgt gattatgcaa ggagctgatt taagtggatt ggctaataaa
     1681 ctcggtatta aagaacaaac tattcaagcg ggtgaattta aaagtgctgg aacttttgca
     1741 agagcttgga atgagaatga aagaaatttt ttacagggtt taattgatca aagttatgat
     1801 ctttttacag gttttgttgc caaggaaaga gcattagatc ttaataaaaa agatcaatgg
     1861 gcaaatgcaa gagtgttttt agctgccaag gctaaggagc ttggtcttat agatgagctt
     1921 agtaattatg aaaatgctaa aaaggagctt gaaaaacttg ctaatgtttc aaatcctgtt
     1981 tggaaagaag aagataagat tgataaattt cttaaccgcc tagaaggaca aacatcaagc
     2041 ttgataagta aaagcttaat cgaaatcgtt tataaaacta atagcagttt tataagcgct
     2101 agataaaata tataaatatt tttatttaat ttttgtaata tttttatgca ataattattt
     2161 atatcttaga taaggagtaa aataatgaaa aaaaatattg tttttttcga agttaaaggt
     2221 gggagtgata aaggtgaaga tggctataga aaagatacca tgcctatggt aaatgcctta
     2281 aaagctaagg gttggaatgc tgaggtgatt ttttttgaag tgggtaaaaa agatgaaatt
     2341 tacaaatatg tgaaagaaaa ttttgatggt tatgtttctc gcatcaatcc tggcaatctt
     2401 aaagaagaaa atgagtattt tgatatgtta agaaaacttt gtgccgataa gcttgtaggc
     2461 atgcctcatc ctgatgctat gataggttat ggcgctaaag atgcacttac aaaattagca
     2521 gatactgatc ttgttccaag cgatacttat gcttactatg atattaagac ttttaaagaa
     2581 aattttccaa aaagtttggc taaaggtgaa agggttttaa aacaaaatcg tggctctaca
     2641 ggagagggaa tttggcgtgt gagtgtagag ggtaatgtta gtggagatag tttgccttta
     2701 aacacaaaaa tcaaatgcac agaagctaag gataatcatg tagaacatag agagcttggg
     2761 gaatttatgg atttttgtga gcaatatatc ataggtgata atggtatgct tgtggatatg
     2821 acttttttac cgcgcattaa agaaggtgaa atcagacttt taatgcttta taacacccct
     2881 gtaaatgtag tgcataaaaa accagctgaa gatgctgatg ctttttctgc tacgcttttt
     2941 agtggggcaa aatatcgcta tgataagcca gaagattgga aaactttggt ggatatgttt
     3001 ttaggcgagc ttcctaaggt aagggaaaaa ttaggcaatt acgacttacc attgatttgg
     3061 acggctgatt ttattttaga tactgatgaa aagggcaatg ataaatatgt tttaggcgag
     3121 attaattgtt cttgtgtagg ctttacttct catttagaac ttgctgatga agtagcttca
     3181 aatattatta atattgtaag taaaactaag gcttagtctt taagtttaat gtccatttta
     3241 ttattgcaaa atggacattc tttttctatt gtttttaagt ttgagctata ttctatcgag
     3301 aaaaaatttt cacaaaatga gcattttgta tctttggtta gtataggata ggaatagtca
     3361 aatttatcca aaataaaata ttttattttt tatccattaa atttccttct ttgtctaact
     3421 tatactttat ttattatttt aacgcataaa tagttaatta gaaattttct gaatattttt
     3481 tataaaactg tatggcttct ttgcattttt tacatttaaa ttttacgccc ttaagttgaa
     3541 ttttttgatg aattccaaat ggtacatcat gcatttgttc tacgcattcg catgtataaa
     3601 gataaactgt attttcatca tctttttctt ctttgacttc ttcaaagctt acttccccat
     3661 catcttcaga agttaaagaa gatcttctgt attgttcaac tttcacatct ttatagagta
     3721 tatgttctaa aagccatttt ttagaaactg tgtaaagctt ctcttttaaa tcattagtgg
     3781 tttttatgtt ttgtataaga taagacatat cacgaatgat attttatgca tgattttgtg
     3841 ttcatttaaa taaggataat gaatttcttg catataatct tcttcattac taaaatgttc
     3901 tttcatatag ttaaaaagtt ctgttaaaat ttctttgagt tcttctcgtt ttacaaattt
     3961 ataaacagca ctttcaacct tgcttgcaag ttcacaaagt ttttggtgtt gaatgtcaat
     4021 cattgtgtta tgaatactgt atttttcatt ccaagttgga attagtttat ctaaaagcac
     4081 cttctttaat ttttgtattt aaaattaatt
//
LOCUS       DAZBIH010000119         4014 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.120, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000119 DAZBIH010000000
VERSION     DAZBIH010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 4014)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4014)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4014
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.120"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1257
                     /locus_tag="ACHFOB_001566"
     CDS             <1..1257
                     /locus_tag="ACHFOB_001566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HFN5800343.1"
                     /translation="DLKKELILKKGILHFDFTASALALKCVEKEISKILPTYANTHSD
                     SSLNSFKTQQTYEQARKDIKKSLSLDENFALIACGTGSSSAIKKFQELIGIYIPPLVK
                     ERYFTQIDKNTLPLVIVGPYEHHSNELSFREGLCECIRIPLDKNGEIDFDFLEKTLQK
                     NKKRKIIASFSLASNVTGILSDYKRISEMVRKFKGIVAFDASSFIPYKNISCQYYDAL
                     FISSHKLIGGIGGSGLLAIKKDLCGNKPSFAAGGTVGYVSRTSQCYLCNEEALEEGGT
                     PGILQLIRASLAFKIKDSIGIKNIEKKEEILKDYFFKKLKTIPNLILYAKNLKTRLPI
                     FAFNIKGISPFDIAYELSKKYHIETRAGCACAGPYGHDLLGLKDNQKLKTKPGWLRIS
                     LHYTHEKEDIDYFFNALNKTIIKLSH"
     gene            complement(1254..2078)
                     /gene="purU"
                     /locus_tag="ACHFOB_001567"
     CDS             complement(1254..2078)
                     /gene="purU"
                     /locus_tag="ACHFOB_001567"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008864 - formyltetrahydrofolate
                     deformylase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HFN5800344.1"
                     /translation="MISVLKICTKDQKGLIYRISDVIFKYHINIVKNDEFVGEGMFFF
                     RALLEGEFDKEAFIGTLEAMLGQEALIELCEKRKKDIVVFATKESHCLGDLLIKHYSN
                     ELEANIKAVISNHNSLKDLVEKFEIPYHFISAENLDRKEQENQILKCLEQYKFDYLVL
                     AKYMRILSPDFVRHFEGKIINIHHSFLPAFIGANPYKQAFERGVKIIGATAHFVNNNL
                     DEGPIITQAVSPVNHEFTWQDMQQAGRNIEKDVLSKALDLAFEDRIFIYNNKTIIF"
     gene            complement(2075..3193)
                     /locus_tag="ACHFOB_001568"
     CDS             complement(2075..3193)
                     /locus_tag="ACHFOB_001568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HFN5800345.1"
                     /translation="MQISKISLKNNPDLQFIAEFLKPYTKRVYLVGGSVRDLFLGLKI
                     CDYDIELYDIKPKDFEKIMQKLGAQGFGKSFFVCKFKNYDLALARTENKISYGHKGFE
                     VQICNDEKLGAKRRDFTINSMMINLFNDEFLDFYGGLKDLGAGFLRHIDKQSFQEDSL
                     RVLRAVVFASRFNFKIASESLKLMQSMDITDLSKDRINAELYKFFKSPRLDVGYRYLQ
                     ELDLEKQIFGFESIFKSLEFQNLLRQSREFVKSDALFLYLYLNFFNLEKDIFFKRTKL
                     KKEYLKYANQAFYLDDISDFELAKIAFEMPLKEWLGLWSKKRIEQAKRLGLYENKFES
                     KILAKDFINAGFCGKILGLKLQEARENELKEYIKGLAK"
     gene            complement(3162..3653)
                     /locus_tag="ACHFOB_001569"
     CDS             complement(3162..3653)
                     /locus_tag="ACHFOB_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoglutarate:acceptor oxidoreductase"
                     /protein_id="HFN5800346.1"
                     /translation="MNLEDLAKKTISEVSSIMEEQRRQNEILKEQELNRKTEIKDELP
                     PMEFVCEELDTPQDLEDKISMAKFEEEQKIQNNIEISTQENKEFKKEEPFLQSEILNP
                     SVMTEVQTLNEDIFLKHLRERILVLFEGLNSIKKDDLENRLNLTINFLEFLLANIEDK
                     LKK"
     gene            complement(3650..3898)
                     /locus_tag="ACHFOB_001570"
     CDS             complement(3650..3898)
                     /locus_tag="ACHFOB_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HFN5800347.1"
                     /translation="MMKNTVTEASIYEAQGLKDEALEIYKNILKEDPDNQNAIDAVRR
                     LSGFRSKHKDLNTQMLDFFINMKSDEEINEFKRWLIKI"
BASE COUNT         1372 a          691 c          490 g         1461 t
ORIGIN      
        1 gatttaaaaa aagaattgat cttaaaaaaa ggtattttgc attttgactt cacagcaagt
       61 gctttagctc taaaatgtgt agaaaaagaa atttcaaaaa ttcttccaac ctatgcaaac
      121 acacattctg atagctcttt aaattctttt aaaactcaac aaacttacga acaagcaaga
      181 aaagatataa aaaaaagttt atcattagat gaaaattttg cccttatagc ctgcggaaca
      241 ggatcaagca gtgctattaa aaaatttcaa gaattgatcg gcatttacat tccccctctt
      301 gtaaaagaaa gatattttac gcaaattgat aaaaatacct tacctttagt tatcgtaggg
      361 ccttatgagc atcattctaa tgaactttca tttcgagaag gcttgtgcga atgtattaga
      421 attcccttgg ataaaaatgg ggaaattgat tttgattttc tagaaaaaac tttacaaaaa
      481 aacaaaaaaa gaaaaataat cgctagcttt tctttagctt caaatgttac tgggatatta
      541 agtgattaca aacgcatttc tgaaatggtt cgtaaattta aagggatagt tgcttttgat
      601 gcatctagtt ttattcccta taaaaacata tcttgtcaat actatgatgc gttgtttata
      661 agttctcata aattaatcgg tggtattggc ggttctggac ttttagctat caaaaaagat
      721 ctttgtggaa acaagcctag ctttgcagca ggtggaactg tgggctatgt ttctcgcact
      781 tcacaatgct acctttgtaa tgaagaagct ttagaggaag gaggaacacc tggaatttta
      841 caactcattc gcgctagctt agcttttaaa atcaaagatt ctatagggat taaaaatata
      901 gaaaaaaaag aagaaattct aaaagattat ttttttaaaa aactaaaaac tatacctaat
      961 ttaattttat acgcaaagaa tttaaaaacc cgattgccta tttttgcttt caatatcaaa
     1021 ggaatttctc cttttgatat cgcttatgaa cttagtaaaa aataccacat agaaacacgc
     1081 gctggatgtg cttgtgctgg gccttatggt catgatttac taggcttaaa agacaatcaa
     1141 aaacttaaaa caaaaccagg ctggttaaga ataagcttgc attatacgca tgaaaaagag
     1201 gatattgatt atttttttaa tgctttaaat aaaactataa taaaattatc gcattaaaat
     1261 attatagttt tattattata tataaaaatt ctatcttcaa aagccaaatc aagtgccttt
     1321 gaaagaacat ctttttctat atttctacct gcttgctgca tatcttgcca agtaaattca
     1381 tggtttacag gcgaaacagc ttgagtgata ataggacctt catcaagatt attatttaca
     1441 aaatgtgccg tagctccaat tattttaacc cctctttcaa aggcttgttt ataaggattt
     1501 gctcctataa atgcaggtaa aaaagaatgg tgaatattta taatcttgcc ttcaaaatgc
     1561 ctaacaaaat caggagataa aattctcata tattttgcta aaaccaaata atcaaattta
     1621 tattgttcaa gacattttaa aatctgattt tcttgctctt tacgatctaa attttcagcg
     1681 ctgataaaat gataaggaat ttcaaatttc tcaactaaat cctttaaaga gttgtgattt
     1741 gaaatcacag ctttgatatt tgcttcaagt tcgttactat aatgctttat tagcaaatct
     1801 cccaaacaat gactttcttt agtagcaaaa acaacaatat ctttttttct cttctcgcaa
     1861 agctctatca aggcttcttg tccaagcata gcctcaagcg ttcctataaa agcttcttta
     1921 tcaaactcac cttctaaaag agcacgaaaa aaaaacattc cttcgcctac aaattcatcg
     1981 tttttcacta tattgatatg atatttaaaa ataacatcag aaattctata gattaaacct
     2041 ttttgatctt tggtgcaaat ttttaataca gaaatcattt agctaaacct tttatatatt
     2101 cttttaattc attctctctt gcttcttgaa gctttaggcc aagaatttta ccacaaaatc
     2161 cagcatttat gaaatctttt gctaaaattt tactttcaaa cttattctca taaagcccta
     2221 atcttttagc ttgctcaata cgctttttac tccaaagtcc aagccattcc ttcaaaggca
     2281 tttcaaaagc aatttttgct agctcaaaat cacttatatc atcaagataa aaagcttgat
     2341 ttgcgtattt taggtattct tttttaagtt tagttctttt aaaaaatata tctttttcta
     2401 aattaaaaaa attcaaatac aaatacaaga ataaagcatc gctttttaca aattctctac
     2461 tttgtctgag caaattttga aattccaaac tcttaaaaat actctcaaag ccgaaaatct
     2521 gtttttctaa gtcaagttct tgcaaatatc tatagccaac atcaagtcta gggcttttaa
     2581 agaatttata aagctccgca ttgatcctat ctttgctaag atcagttata tccatacttt
     2641 gcatcaattt caagctttcg ctagctatct taaagttaaa ccttgaagca aatactactg
     2701 ctcttaatac ccttaaacta tcctcttgaa agctttgttt atcaatatgc cttaaaaagc
     2761 ctgctcctag atcttttaat cctccgtaaa aatctaaaaa ctcatcgtta aaaagattaa
     2821 tcatcataga atttatggta aaatcacgtc ttttggcgcc aagtttttca tcattgcaaa
     2881 tttgaacttc aaaaccttta tgtccatagc ttattttgtt ttcagttcta gcaagagcta
     2941 aatcataatt tttaaactta cacacaaaaa aactttttcc aaagccttgt gcgcccaatt
     3001 tttgcataat cttttcaaaa tctttaggtt ttatatcata aagctctata tcatagtcac
     3061 aaatttttaa gcctaaaaac aaatccctaa cgctacctcc aaccaaatac actcgtttgg
     3121 tataaggctt taaaaactca gcaataaact gtaaatcggg attatttttt aagcttatct
     3181 tcgatatttg caagcaaaaa ctctaaaaaa tttatggtca agtttaacct attttcaaga
     3241 tcatcttttt ttatgctatt taaaccttca aaaagaacta aaattctctc tctaagatgt
     3301 tttaaaaaaa tatcctcatt aagcgtttga acctctgtca taacactagg atttaaaatt
     3361 tcactttgta aaaaaggctc ttctttttta aactctttat tttcctgagt agaaatttca
     3421 atattatttt gtattttttg ctcttcttca aattttgcca tagaaatttt atcttctaag
     3481 tcttgcggag tatcaagctc ttcgcataca aactccatag gcggtaattc atcttttatt
     3541 tcagtttttc tatttaattc ttgttctttt aaaatttcat tttgtcttct ttgctcttcc
     3601 atgatagagc taacttcgct aatggttttt ttagctaaat cttccaaatt catattttta
     3661 tcaaccacct tttaaattca ttaatttctt catcgctttt catattaata aaaaaatcca
     3721 acatttgagt gtttaaatct ttatgcttgg atctaaaacc actaagacga cgaaccgcat
     3781 caatagcgtt ttggttatcc ggatcttctt ttaagatatt tttataaatt tctaaagctt
     3841 cgtcttttaa cccttgagcc tcatagatag aagcttcagt gactgtattt ttcatcactg
     3901 tttcctaaaa tttttcttta attctagcaa aaagcttttt aatttatctt taagaaaata
     3961 aaatgatttt taatgtctat tttgttttaa acaatttttc tatatattct tttt
//
LOCUS       DAZBIH010000120         3803 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.121, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000120 DAZBIH010000000
VERSION     DAZBIH010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3803)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3803)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3803
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.121"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1021)
                     /gene="selD"
                     /locus_tag="ACHFOB_001571"
     CDS             complement(<1..1021)
                     /gene="selD"
                     /locus_tag="ACHFOB_001571"
                     /EC_number="2.7.9.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004756 - selenide, water dikinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0001887 - selenium compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_except=(pos:complement(971..973),aa:Sec)
                     /transl_table=11
                     /product="selenide, water dikinase SelD"
                     /protein_id="HFN5800348.1"
                     /translation="MQYKNQNLTHFVKAAGUAAKLSPGGLKTILNFMQKTPALLSDIG
                     NNEDASVYQISPDLALVQTLDFITPIVDSAYHFGAIAAANALSDVFAMGAEVINALNI
                     VGFDTCNHDLNILKELLEGANDKVKECNALVVGGHTIESTELFFGLSVTGKVHPSKFI
                     ANNTSKIGDCIILTKPLGIGILSTALKAQMLNQKHLDIMLKNMMELNYKASQIALKFH
                     PSAMSDVTGFGLLGHLKEMLNKNISFEIFESELPFLDGVKEYFNMGLIPAGAYKNLEF
                     IKELTPDLNEEKLLLCDPQTSGGLLISISEKDSLECLKKLEDENIQAKIIAKVVNKQE
                     NDIIIS"
     gene            complement(1031..1603)
                     /gene="yedF"
                     /locus_tag="ACHFOB_001572"
     CDS             complement(1031..1603)
                     /gene="yedF"
                     /locus_tag="ACHFOB_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase-like selenium metabolism
                     protein YedF"
                     /protein_id="HFN5800349.1"
                     /translation="MKIDCRNLSCPQPIVETKNALEKLQENEILEIVLNSIISKNNVV
                     KFLNSLNLNPVVDENAQEFCIKVQKKNFDSSEVNIHDYNVLFLKTDKVGEGELGQNLL
                     VGFLSTLKNLDHAPSKILCVNESVLINVDENHKAHLAMKELENLGIEIISCGACLEFF
                     NKSKELKIGNIGNAYEILNELFGKAKIITL"
     gene            complement(1714..>3803)
                     /gene="ccaA"
                     /locus_tag="ACHFOB_001573"
     CDS             complement(1714..>3803)
                     /gene="ccaA"
                     /locus_tag="ACHFOB_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="aspartate chemotaxis receptor CcaA"
                     /protein_id="HFN5800350.1"
                     /translation="NIGLKLIFSVAAVVVIGLVILISLITKQVSQNITKNTEDILASI
                     TKEYATQTQGIFGEMIALNKSISGTLTEMFRSTSKEDLDIDNITNIITNTFDNSAYSN
                     FTYLYLIDPPEYFKEESKFFNTQSGKFVMLYADEEKDNKGGIKAIQASDEIANLQVVQ
                     DILKKAKYGENKVYIGRPIKMNLEGQDFDAVNVAMPIFDRKNQVVGVIGMTLDFSDIA
                     TYLLDPKGQKYDGELRVLLNSDGFMAIHPNKNLVLKNLKDINPNKGAQETYKAISEGK
                     NGVFNYIASDGDDSYAAINSFKVQDSSWAVLVTAPKYSVFKPLKKLQLIILGASFIFI
                     FVVLGVVYYCVRKIVASRLPVILSSLESFFRFLNHEKIEPKAIEIRANDELGAMGRII
                     NENIEKIQISLEQDQNAVDESVQTAREIEKGNLTARITKNPINPQLVELKDVLNRMLD
                     VLQSKIGSNMNEINRVFDSYKALDFSTEVFNAKGEVEITTNILGKEIKKMLLASSNFA
                     KDLANQSEELKNSMQKLADGSNAQASSLEQSAAAVEEINSSMQNVSGKTVEVASQADD
                     IKNIVNVIKDIAEQTNLLALNAAIEAARAGEHGRGFAVVADEVRQLAERTGKSLSEIE
                     ANINILVQSVNEVAESVKEQTAGITQINDAIAQLETVTKENVEVANVTNNITNEVNQI
                     AAAILEDVNKKRF"
BASE COUNT         1257 a          655 c          462 g         1429 t
ORIGIN      
        1 aagaaatgat aatatcattt tcttgcttat ttacaacctt agcaataatt ttagcttgaa
       61 tattttcatc ttctagtttt tttaaacatt ctaaggaatc tttttcactt atagaaatta
      121 aaagtcctcc tgaagtttgt ggatcacaaa gtaataattt ttcttcattt aaatcagggg
      181 taagttcttt tataaattct aaatttttat aagctccagc aggaattaaa cccatattaa
      241 aatactcttt tactccatct aaaaaaggaa gttcactttc aaaaatttca aaagaaatat
      301 ttttatttag catttctttt aaatgtccta aaagtccaaa acctgtaaca tcactcatgg
      361 cacttggatg aaatttaaga gcaatttgac tggctttata atttaactcc atcatgtttt
      421 taagcattat atctaaatgt ttttgattta acatttgcgc ctttaaagct gtacttaaaa
      481 ttcctattcc taaaggcttg gttaaaatga tacaatctcc gattttagaa gtattattag
      541 caataaattt actaggatgt acttttcctg taacactaag tccaaaaaaa agctcggtgc
      601 tttctatagt atggccaccc acgactaaag cattacattc tttaacttta tcatttgcac
      661 cttctaaaag ctcttttaag atgtttaaat catgattaca agtatcaaaa cctactatat
      721 ttaaggcatt aattacctct gcacccatag caaaaacatc gcttaaagca tttgctgcag
      781 caatagcacc aaaatgataa gcactatcta ctataggagt gataaaatca agcgtttgca
      841 ccaaagctaa atcggggctg atttgatata cgcttgcatc ttcattattt ccgatatcac
      901 taagtaaagc aggagttttt tgcatgaaat ttaaaattgt tttaagacca cccgggctta
      961 atttcgctgc tcagcctgct gctttaacaa aatgcgttaa attttgattt ttatattgca
     1021 gtgtttttcc ttatagagta atgatttttg ctttaccaaa aagctcgttt aaaatttcat
     1081 aagcattgcc tatatttcct attttaagtt ctttgctttt attaaaaaat tctagacaag
     1141 ctccacaact tatgatctca atacctaaat tctcaagttc tttcatagct aaatgtgctt
     1201 tatgattttc atcaacattg attaaaacac tttcatttac gcaaagaatt ttacttggag
     1261 catgatctaa attttttaag gtacttaaaa atcctacaag taaattttgt cccaattcac
     1321 cctcacccac tttgtcggtt tttaaaaata aaacattata atcgtgaata tttacttcac
     1381 tagaatcaaa attctttttt tgtactttga tgcaaaactc ttgtgcattt tcatctacaa
     1441 cagggtttaa atttaaagag ttaagaaatt ttacaacatt attttttgaa ataatagaat
     1501 ttaaaacaat ttctaaaatt tcattttctt gaagtttttc aagagcgttt tttgtttcaa
     1561 ctataggctg aggacaagat agattgcgac aatcaatttt cattattttt ccttgatatt
     1621 agctttgaaa aataatatta ttttattact tgttttgtgt ttaaaaattt taaataatat
     1681 agaaaaaatt taaaagctca aaaatgagct tttttaaaat ctttttttat tcacatcttc
     1741 aagaattgcc gcagcaattt gattgacttc atttgttata ttattggtga catttgcaac
     1801 ttcgacattt tccttagtta cagtttcaag ttgtgctata gcatcgttaa tctgtgtgat
     1861 tcctgctgtt tgttctttta cagattctgc tacttcattt acactttgaa caagtatatt
     1921 aatatttgcc tcgatttcag ataaggattt tcctgttctt tccgcaagct gtcttacctc
     1981 atctgcaaca actgcaaaac cacgcccatg ttctccagca cgtgcagctt caatagctgc
     2041 atttaaagca agaagattcg tttgctcagc gatatcttta atcacattga caatattttt
     2101 tatatcatca gcttgtgaag caacctcaac tgtttttcca cttacatttt gcatagaaga
     2161 attaatctcc tccacagctg cagccgattg ttctaaagaa ctcgcttgtg cattagagcc
     2221 atcagcaagt ttttgcatag aattttttaa ctcttctgac tgattggcta aatctttagc
     2281 aaaatttgaa gaagccaaaa gcatcttttt aatttctttg cctaaaatat tagttgtaat
     2341 ctcaacttca cctttagcat taaatacttc tgtactaaaa tcaagagcct tataactatc
     2401 aaaaactcta ttaatttcat tcatattaga accaatttta ctttgtaaaa catcaagcat
     2461 cctattaaga acatctttaa gttctactaa ttgaggattt ataggatttt tagtaattct
     2521 tgcagttaaa ttaccctttt cgatttctct agcagtttgc accgattcat ctacagcatt
     2581 ttgatcttgt tctaaagata tttgaatctt ttcaatattt tcatttatga ttcttcccat
     2641 tgctcctagc tcatcattag cacgaatttc aatagcttta ggttcaattt tttcatgatt
     2701 taaaaaacgg aaaaatgatt ctaaagaact aagaatcaca ggcaatctag atgcgacaat
     2761 ttttcttacg caataataaa ccactcctaa aacaacaaaa ataaaaataa aagatgcacc
     2821 aagaataatt aattgtaatt tttttaaggg tttaaatact gaatatttag gagcagttac
     2881 caaaactgcc caagaactat cttgcacttt aaaactatta atcgcagcat aagaatcatc
     2941 accatcagaa gctatatagt taaaaactcc attttttcct tcacttatgg ccttataagt
     3001 ttcttgtgca cctttattag gattgatatc ttttaaattt tttaaaacta gatttttatt
     3061 tggatgtatc gccataaaac catctgaatt taaaagaact cttaattcac catcatattt
     3121 ttgaccttta gggtctaaaa gataagtagc aatatctgaa aaatctaaag tcatgcctat
     3181 gacacctaca acttgatttt ttcgatcaaa aataggcata gcaacattta cagcatcaaa
     3241 atcttgacct tctaaattca tcttaatagg acggcctata tatactttat tttccccata
     3301 ttttgctttt tttaatatat cttgcacaac ttgcagatta gctatttcat cactagcttg
     3361 tattgctttt attccgcctt tattatcctt ttcttcatca gcgtaaagca taacaaattt
     3421 tccactttga gtattaaaaa atttactctc ttctttaaag tattctggcg gatcaataag
     3481 atataaataa gtaaaattag aataagcact attatcaaaa gtattggtta taatatttgt
     3541 tatattgtct atatctaaat cttctttaga ggttgatcta aacatttctg ttaaagtacc
     3601 tgaaatactt ttatttaaag cgatcatttc cccaaaaatt ccttgagttt gagtagcata
     3661 ttctttcgtg atagaagcaa gaatatcttc tgtatttttg gtaatatttt gacttacttg
     3721 ttttgtgatt aatgaaatta aaataacaag tccaataaca acaacagctg ccacagaaaa
     3781 aataagtttt aaacctatat tta
//
LOCUS       DAZBIH010000121         3790 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.122, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000121 DAZBIH010000000
VERSION     DAZBIH010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3790
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.122"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..538)
                     /locus_tag="ACHFOB_001574"
     CDS             complement(<1..538)
                     /locus_tag="ACHFOB_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(A) polymerase"
                     /protein_id="HFN5800351.1"
                     /translation="MDLKSLENNRLYILKRLGILKFLSIIEALLVGFLAFVFIRDALI
                     AVILAVFVGVFFFRFTAKKLKLAQKELQINALNLFLRRFGAKFKKQSLSQKDFLKLGL
                     TKDLKEFKSQNCFEFKDFKIYDIQFLDENKRFFCGILLEILSANKNPSFENEEQIYIK
                     LQDKNFTLNHVFSKENHYL"
     gene            complement(538..2346)
                     /gene="typA"
                     /locus_tag="ACHFOB_001575"
     CDS             complement(538..2346)
                     /gene="typA"
                     /locus_tag="ACHFOB_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA];
                     GO_process: GO:0006950 - response to stress [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HFN5800352.1"
                     /translation="MENIRNIAVIAHVDHGKTTMVDELLKQSGTFSEREQISERVMDS
                     NDIEKERGITILSKNTAINYKGTKINIIDTPGHADFGGEVERVLKMIDGVLLLVDAQE
                     GVMPQTKFVVKKALSLGLKPIVVINKIDKPAADPERVINEIFDLFVALDANDEQLDFA
                     IVYAAAKNGYAKLDLNDESDNMEPLFKTILERVPAPSGTNDNPLQLQVFTLGYDNFVG
                     KIGIARIFNGVVKKNQSVMLAKADGTKVNGRISKLIGFMGLEKMDIEEAGSGDIVAIA
                     GFEALDVGDSVVDPNNPMPLDPLHIEEPTLSIVFSVNDGPLAGTEGKHVTSNKIAERL
                     EAEMKTNIAMKYESTGEGKFKVSGRGELQITILAENMRREGFEFCMGRPEVIVKVEDG
                     VKTEPFEHLVIDVPEEFSGAVIEKLGKRKAEMKTMAPTGDGQTRLEFEIPARGLIGFR
                     SQFLTDTKGEGVMNHSFLEFRPFSGAVEKRNNGALISMENGVALGYSLFNLQERGVLF
                     IEPQTKVYTGMIIGEHSRPNDLDVNPIKGKNLTNVRASGSDDAIKLVPPRKLSLERAL
                     EWIEEDELVEVTPVNVRVRKRYLDPTQRKRMEKAKS"
     gene            2481..2804
                     /locus_tag="ACHFOB_001576"
     CDS             2481..2804
                     /locus_tag="ACHFOB_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800353.1"
                     /translation="MSKPLNEEIFIEFKSDLAERKNEVLLQVLELLETFRSDKNEKMA
                     RISSELTEILENEENLEKILNAKNLEELLNILIALNEDKMIKVYEDSYLKEKFPNVMV
                     DKFLK"
     gene            2821..>3790
                     /locus_tag="ACHFOB_001577"
     CDS             2821..>3790
                     /locus_tag="ACHFOB_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN5800354.1"
                     /translation="MMSNLAPQNDVLNLTPSKTSNTSSSFSKTSKNKEHESSDSKNST
                     QDDTESFLNSLLNSIDETNEFLPDHMKISQKEVVNEAMNRLQKGAFDESDKISIFESA
                     SFMQILSLLDKLKTDTADVKLANLSTQLSSLIKTEANFNALKGASNLSELLDIAKDLG
                     LNVKNIKVDRLLDLKATFPNLDKADFFKGAVDNVFKEIINNKISNVSKNLNHNLENTT
                     HTTSTHSTQKTNSKDSGSLLSQTLKNLDSILSSKESKHEKNDKVKSKIEEDTTDAKNT
                     LKNLKNDEFAKNLTEELNIKDKKNQDNLNKDNNLKDLNKESKDLNKD"
BASE COUNT         1311 a          640 c          552 g         1287 t
ORIGIN      
        1 taagataatg attttcttta gaaaaaacat gatttaaagt gaaattttta tcttgaagtt
       61 tgatataaat ttgctcttca ttttcaaagc taggattttt gtttgcactt aaaatttcga
      121 gcaaaattcc gcaaaaaaag cgtttatttt cgtccaaaaa ctgaatatca taaattttaa
      181 aatccttaaa ttcaaagcag ttttgacttt taaattcttt caaatccttt gtaagtccta
      241 attttaaaaa gtctttttgg cttaaacttt gctttttaaa ttttgcccca aaacgacgca
      301 aaaacaaatt taaagcatta atttgtaatt ctttttgtgc gagttttagt tttttagctg
      361 taaaacgaaa gaaaaaaaca cctacaaaaa cagctaaaat tactgcgatt aaggcatctc
      421 ttataaaaac aaaggctaaa aaacctacaa gtaaggcttc gataatgctt aggaatttta
      481 agattcctaa gcgtttaagt atataaagtc tattattttc taagcttttt aaatccatta
      541 agattttgct ttttccattc tttttctttg agttggatca agatagcgtt tgcgaacacg
      601 cacatttaca ggcgtaactt ctacaagttc atcttcttct atccactcta aagctctttc
      661 aagacttaat tttctaggtg gcacaagctt gattgcatca tcgcttccac ttgctcttac
      721 attggtaaga ttctttcctt tgataggatt aacatctaaa tcatttggac gagagtgctc
      781 acctataatc ataccggtat aaactttagt ttgaggctct atgaaaagta ctccacgctc
      841 ttgaaggtta aacaaagaat accctaaagc cacgccattt tccatagaaa ttaacgctcc
      901 attattacgc ttttcaaccg caccgctaaa aggacggaat tctaaaaagc tatgattcat
      961 cacgccttcg cctttggtat cagttaaaaa ctgacttcta aaacctataa gtccgcgtgc
     1021 tggaatttca aactcaagtc ttgtttgccc atcgcctgtt ggtgccatgg ttttcatttc
     1081 agcttttctt ttgccaagtt tttctattac tgcaccgcta aattcttcag gcacatcgat
     1141 aactaaatgt tcaaaaggtt ctgttttaac tccatcttca acttttacga taacttcagg
     1201 tcttcccatg caaaactcaa aaccttcacg acgcatattt tcagctaaaa tagtgatttg
     1261 aagttcgccc ctaccgctta ctttaaattt gccttcgcct gtgctttcgt atttcatagc
     1321 gatattagtt ttcatttcag cttctaagcg ttcagcgatt ttatttgaag ttacatgttt
     1381 tccttcagtt cctgctaatg ggccatcatt tacagaaaat actatactta aagtcggctc
     1441 ttcaatgtgt aaaggatcaa gtggcatggg attgtttgga tctacaacgc tatcacccac
     1501 atctaaagct tcaaaacctg ctatagctac gatatctcca cttcctgctt cttcaatatc
     1561 cattttttct aagcccataa agccaatgag ctttgaaatt ctaccattta ctttggtgcc
     1621 atcagctttt gcaagcatta cgctttggtt tttctttaca accccattga aaattctagc
     1681 aatgcctatt ttacctacga aattatcata ccctaaagtg aaaacttgaa gttgtaaagg
     1741 attgtcattt gtgccacttg gtgctggaac gcgttcaagt atggttttaa aaagtggctc
     1801 catattatca ctttcatcgt ttaggtcaag cttagcataa ccattttttg ctgcagcata
     1861 aactatggca aagtcaagtt gctcatcgtt tgcatctagg gctacaaaaa gatcaaaaat
     1921 ttcattgatc actctttcag gatcagcagc tggtttgtcg attttgttga ttacaactat
     1981 aggtttaagc cctaaagata aagctttttt aaccacgaat ttagtttgcg gcataacgcc
     2041 ttcttgagca tctactaaaa gcaaaactcc atcaatcatt tttaaaacgc gttctacttc
     2101 tccgccaaaa tcagcatgcc ctggagtatc tatgatgttg atttttgtac ctttgtaatt
     2161 gatcgctgtg ttttttgaaa gtatggtaat gccacgttct ttttctatat cgttgctatc
     2221 cataacgcgt tctgaaattt gttctctttc gctaaaggtg cctgattgtt ttaacaattc
     2281 atctaccata gtggttttac catggtcaac gtgagctata actgctatat ttctaatgtt
     2341 ttccaaattt tcttctccaa agctaaattt ttaaaagctt agattataca aaaatttaac
     2401 ttaaactaca aagcatcaaa acttggaaca cttcttgctt taaagacttg tgaaattaaa
     2461 attttaaaaa ggaagttaaa atgtcaaaac cattaaatga agagattttt attgaattta
     2521 aaagcgattt agctgagaga aaaaatgaag ttttacttca agttttagaa cttttagaaa
     2581 cttttagatc agataaaaac gaaaaaatgg caagaatttc aagtgagctt acagaaattt
     2641 tagaaaatga agaaaattta gaaaaaattt taaatgctaa aaatttagaa gagcttttaa
     2701 atattttaat tgctttaaat gaagataaga tgattaaagt atatgaagat tcttatttga
     2761 aagaaaaatt tcctaatgta atggtagata aatttttaaa ataatttttt tgaaggaaaa
     2821 gtgatgtcaa atttagctcc gcaaaatgat gttttaaatc ttacgccgag taaaacttct
     2881 aatactagta gttcctttag taaaacgagt aaaaataaag aacatgaaag tagcgatagt
     2941 aaaaattcaa ctcaagatga tacggaaagt tttttaaatt ctttgcttaa ttctattgat
     3001 gaaaccaatg aatttttacc tgatcatatg aagatcagtc aaaaagaagt tgttaatgaa
     3061 gcgatgaaca gacttcaaaa aggagctttt gatgagagtg ataagataag cattttcgaa
     3121 tctgcttctt ttatgcaaat tctttctttg ttggataagc taaaaacaga tacagcagat
     3181 gttaaactag caaatctttc tactcaactt tcaagtctta ttaaaacaga agctaatttt
     3241 aatgctttaa aaggtgcatc aaatcttagt gagcttttgg acatagctaa agatctgggc
     3301 ttaaatgtaa aaaatattaa agtagatcgt cttcttgatc ttaaagcaac ttttccaaat
     3361 ttagataagg ctgatttttt taagggtgct gtggataatg tttttaaaga aatcatcaat
     3421 aataaaattt ccaatgtgag taaaaattta aatcacaatt tagaaaatac aactcatact
     3481 acaagcactc attctacgca aaaaacaaat tctaaagata gcggttcttt gctttctcaa
     3541 actttaaaaa atttagattc catactttca tccaaagaaa gcaaacacga aaaaaacgat
     3601 aaagttaaat caaaaataga agaagatacc acagatgcta aaaatacttt aaaaaatctc
     3661 aaaaatgatg agtttgcaaa aaatttaaca gaagagttaa atataaaaga taaaaaaaac
     3721 caagataatt taaataaaga taacaatctt aaagatttaa ataaagaaag caaagactta
     3781 aacaaagatt
//
LOCUS       DAZBIH010000122         3736 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.123, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000122 DAZBIH010000000
VERSION     DAZBIH010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.123"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            60..1571
                     /locus_tag="ACHFOB_001578"
     CDS             60..1571
                     /locus_tag="ACHFOB_001578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AMP-binding protein"
                     /protein_id="HFN5800355.1"
                     /translation="MTTHIYDFLEKSLIKFSEKTAFVEPFAKERKEITYKDFDLFSKK
                     LASEILKTLKNDNPTQAPVLIILPKGINCLISFFGVALSGNFYTLLDEKSPKERVEKV
                     IEVLKPKLFITSKDLKFNLDLPTLYTQDFESFNIDESLIKNAKEKHIDTNLLYVLFTS
                     GSTGIPKGVSIAHKSVIDYAFHFCEAFEVDENEIIANQAPLYVDASLPDILATIKPSA
                     TLHLIPNHLFAFPNKILDYLEQEKITMIFWKPTVLIYFIKDQDNLKNYPLKNLNKILI
                     GGEIMPIKQLNIWRKHLPNALFANCYGPTEITDVCCYYILDREFSENEILPIGKAYKN
                     TELLVFDENMNFISPKQIGVKGELFVRGTSLSLGYYNDKEKTKQAFIQNPLHDNYLDL
                     LYKTGDIVSYNEFGELLCYGRNDNRIKFMGHRIELGEIESVINSHSKIILCACIFKEK
                     IICFYESDEELDFKAFLKDKLPSYMIPKHFIKIEKFKLNQNSKIDRKALHELI"
     gene            1558..2283
                     /locus_tag="ACHFOB_001579"
     CDS             1558..2283
                     /locus_tag="ACHFOB_001579"
                     /EC_number="2.3.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HFN5800356.1"
                     /translation="MNSFEKAFYEGFKLSNCYDNFNLIREKILKQELILEKHENNNFF
                     FFNRTDGLLYYFINDLQDYDLKACYIKILSKAPKHALHDEFLKLNHFKKILNHKQMVL
                     NKEIKPSKFCFISKALHEDSKELYSFFRKYFDPYLFYFSQKNLEEKIPNILVYKENEK
                     IHAALIYTQTLNANFLDFIAVDRNLKHKNVAFALLNHYFAANTQNKFFKLFVEEKNQK
                     AINFYKRAGFCFNHINLKFYRNF"
     gene            2283..2968
                     /locus_tag="ACHFOB_001580"
                     /pseudo
     CDS             2283..2968
                     /locus_tag="ACHFOB_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011049948.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016742 - hydroxymethyl-, formyl- and
                     related transferase activity [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="formyltransferase family protein"
     gene            2971..3195
                     /locus_tag="ACHFOB_001581"
     CDS             2971..3195
                     /locus_tag="ACHFOB_001581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002829040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HFN5800357.1"
                     /translation="MQEIKQFFINIERTDINESMENLVSEDFIDSIDIMALVAEIEKF
                     YKKPLKAEFITPENFESFQAIKNMIEQAFI"
     gene            complement(3188..>3736)
                     /locus_tag="ACHFOB_001582"
     CDS             complement(3188..>3736)
                     /locus_tag="ACHFOB_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800358.1"
                     /translation="TVLPLLRYIIGRDLEQFDFIFNDPNTLIEMFTKTYWTREDENSP
                     YFFANENYMIRSLLNSSHLIIQVNVNKNIVLVSYHSSKDEFNTSKDKQTLFLAYKELG
                     YDATLHLIKDESEIDGRFIKDLNHGMRITDRALFRKELPLMLEKLQKRKSFMQENSIS
                     YPCGNKVFTFKDVGDKFVLCIK"
BASE COUNT         1449 a          497 c          514 g         1276 t
ORIGIN      
        1 taaaggcctt ttttattaat ttatcgatat tatattacaa aaaattaaaa aggtaaatca
       61 tgacaactca tatctatgat tttttagaaa aaagtttaat caaatttagc gaaaaaactg
      121 cttttgtaga accttttgcc aaggaaagaa aagaaatcac ttacaaagac tttgatcttt
      181 tttctaaaaa actagccagt gaaattttaa aaactttaaa aaatgataat cctactcaag
      241 ctcctgtttt aatcatctta cctaagggga ttaattgttt aatttcattt tttggagtgg
      301 cactcagtgg aaatttttat acccttttag atgaaaaaag tcctaaagaa agagtagaaa
      361 aagtcataga ggttttaaaa cctaaacttt ttatcacttc aaaggattta aaatttaatt
      421 tagatttgcc tacgctttat acacaagact ttgaaagttt taatatagat gagagtttaa
      481 taaaaaatgc aaaagaaaaa catatagata ctaatttact ttatgtgctt tttacaagcg
      541 gaagcacagg cattcctaaa ggagtaagca tagctcataa gagtgtgatt gattatgcct
      601 ttcacttttg cgaggctttt gaagttgatg aaaatgaaat tattgccaat caagctcctt
      661 tatatgtaga tgcttctttg cctgatatac ttgcaactat caaaccatca gcaacattac
      721 atctaatacc caatcacctt tttgcctttc caaataaaat tttagattat ttagaacaag
      781 aaaaaattac catgattttt tggaaaccta cagtcttgat ttattttata aaagatcaag
      841 ataatttaaa aaactatcct ttaaaaaatt taaataaaat tttaataggc ggagaaataa
      901 tgcctattaa acaacttaat atttggagaa aacaccttcc aaatgcttta tttgctaatt
      961 gttatggtcc aactgaaatc actgatgtat gttgctatta tatcctagat agagaatttt
     1021 cagaaaatga aattctgcct ataggtaaag cttataaaaa cacagaactt ttagtttttg
     1081 atgaaaatat gaatttcata agccctaagc aaataggtgt taaaggggag cttttcgtgc
     1141 gtggaacttc tttatcttta ggctattata atgacaaaga aaaaaccaaa caagctttta
     1201 ttcaaaatcc tttgcatgat aattatttag atttactcta taaaacagga gatatcgttt
     1261 cttataatga atttggagag cttttgtgct acggaagaaa tgataataga attaaattca
     1321 tggggcatag gatagaactt ggagaaatag aaagtgtgat taattctcat agtaaaatca
     1381 ttttatgtgc ttgcattttt aaagaaaaaa tcatttgttt ttacgaaagt gatgaagagc
     1441 ttgactttaa agctttttta aaagacaaat taccttctta tatgatccca aaacatttta
     1501 ttaaaatcga aaaatttaag cttaatcaaa acagtaaaat cgatagaaaa gccttacatg
     1561 aactcatttg aaaaagcctt ttatgaagga tttaaattaa gcaattgtta tgataatttt
     1621 aatctaatcc gagagaaaat tttaaaacaa gagctcatct tagaaaaaca tgaaaataat
     1681 aattttttct tttttaatcg cacagatggt ttgttgtatt attttatcaa cgatttgcaa
     1741 gattatgatt taaaagcatg ttatataaaa atcttaagca aagcccctaa gcatgcttta
     1801 catgatgaat ttttaaaact taatcatttt aaaaaaatac tcaatcacaa acaaatggtg
     1861 cttaacaaag agataaaacc gagtaaattt tgctttatct ccaaagcctt acatgaagat
     1921 agcaaagaac tttatagctt ttttagaaaa tattttgatc catatttgtt ttatttttca
     1981 caaaaaaatc ttgaagaaaa aatacccaat atacttgttt ataaagaaaa tgaaaaaatt
     2041 cacgctgctt tgatctacac tcaaactctc aatgctaatt ttttagattt tatagctgta
     2101 gatagaaatt taaagcataa aaatgtggct tttgctttac taaatcatta ttttgcagcc
     2161 aatactcaaa ataaattctt taaacttttt gtagaagaaa aaaatcaaaa agccattaat
     2221 ttttataaaa gggcgggttt ttgttttaat catattaatt taaaatttta taggaatttc
     2281 taatgactta ctcacacatt tatatcatag gtacaggaaa agtcactaaa gaatgccaaa
     2341 aaatagctag tgattttttt aagcaagaag tgatttttgt aaaaatctta aaaattgcct
     2401 tattattagt gcaaataatt cttatatttt caaaaaagaa tgtgtgcaaa ataataccat
     2461 tataaattat cataatgctt tattaccttt tcataaagga tgtaatgcaa gaatttggaa
     2521 catatgggaa aatgataaaa aacaggcatt acttggcaca tggttgaaga aagtatcgat
     2581 acgggtgcga ttttaactca aaaagaaata aagcttgatg ataattttac cgccttaagt
     2641 cttttagata cccaacacaa acttgctata gcttcattta aagaagcttt aaagaattta
     2701 gaaaataaga tctttaaaat tcaaacttta gggggggtat cacaaaaaat tggctttgcc
     2761 aaatgagggt tatttagatc ttacttggga taaagaaaaa atttctcgct ttttaagagc
     2821 tatggactgt ggcgctttaa tcggagtgcc taaggctaga ttgaaaatct taggagagga
     2881 aaaagaaatt ttgttttatg agatcaatga acttgattta attttaaatt taagcgataa
     2941 taccatttta aaaatcacaa aggaataaaa atgcaagaaa tcaaacaatt ttttatcaat
     3001 atagaaagaa cagatatcaa tgagagtatg gaaaatctag taagtgaaga ttttatcgat
     3061 agtattgata tcatggcttt ggttgctgaa atagaaaaat tttacaaaaa acccttaaaa
     3121 gcagaattta taacacctga aaattttgaa agctttcaag ccattaaaaa catgatagaa
     3181 caagctttta tttaatacat aaaacaaatt tatctcccac atctttaaaa gtaaacactt
     3241 tatttccaca aggataagag atggaatttt cctgcataaa agattttctt ttttgcaatt
     3301 tttcaagcat taaaggaagt tcttttctaa ataaagccct atcagtaatc ctcatgccat
     3361 gatttaagtc ttttataaat cttccatcaa tctcgctttc atcttttatc aaatgcaaag
     3421 tggcatcata gcctaattct ttgtatgcta aaaaaagagt ttgtttatct ttggatgtat
     3481 taaactcatc ttttgaacta tgataagata ccaaaacgat atttttatta acattgactt
     3541 gtatgattaa atgagaagaa tttaacaaag aacgaatcat ataattttca ttagcaaaaa
     3601 aataaggtga attttcatcc tctctagtcc aataagtttt agtaaacatt tctattaatg
     3661 tattaggatc attaaaaata aaatcaaatt gctctaaatc tcttcctatt atatatctca
     3721 ataacggcaa aacagt
//
LOCUS       DAZBIH010000123         3704 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.124, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000123 DAZBIH010000000
VERSION     DAZBIH010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3704)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3704)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3704
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.124"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..615
                     /locus_tag="ACHFOB_001583"
     CDS             <1..615
                     /locus_tag="ACHFOB_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate/glutamate racemase family protein"
                     /protein_id="HFN5800359.1"
                     /translation="DKLKSLNSAKILLYSVNFEEIENLQSQDKWQEAAQILTQCAKKL
                     ELAGANFIIIATNTMHKVFNEIQQNINIPILHIAKSSAKALKQENIQKIGLLGTKYTM
                     TQDFYKKMLIEENISVITPSDEDIKIVNDIIFNELCKGKIKQDSKEKYLNIIKKLQEK
                     GAKGVLLACTEIGLLISKNDTNIKIFDTSLIHALDAANEALKDL"
     gene            complement(809..1933)
                     /gene="cydB"
                     /locus_tag="ACHFOB_001584"
     CDS             complement(809..1933)
                     /gene="cydB"
                     /locus_tag="ACHFOB_001584"
                     /EC_number="7.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016682 - oxidoreductase activity, acting
                     on diphenols and related substances as donors, oxygen as
                     acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HFN5800360.1"
                     /translation="MFFGLELEGLQIYWWLILSLLGGLLVFMFFVQGGQTLIDELSKD
                     ELEKTMLVNSLGRKWELGFTTLVLFGGAAFAAFPLFYSTSFGGAYWAWLCILFCFILQ
                     AVAYEYRKKENNVYGSKTYEIFLKINGYLGVFLIGVAVSSFFSGSEFILNEHNFVSWQ
                     NPLHGLELLLNPFNYLLGLALVFLARLLGAAYFMNNINDENIKIRAMKKLMINSILFL
                     PFFLGFLAWIFLKDGFSVDTNGVVSMSANLYLYNFLNQMIFAVLLVIGVILVLLGMVQ
                     GTKGCSKAIFTLGLGTVLTVFALLSSIGLGQSAFYPSLSDLQSSLTLKNASSSYYTLS
                     VMAYVSLLVPFVLAYIIYVWNAMDKVKITREEIANDDHAY"
     gene            complement(1933..3495)
                     /locus_tag="ACHFOB_001585"
     CDS             complement(1933..3495)
                     /locus_tag="ACHFOB_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0070069 - cytochrome complex [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019646 - aerobic electron transport chain
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HFN5800361.1"
                     /translation="MNELSSVDWSRAQFALTALYHFLFVPLTLGLSFMIAIMETIYVK
                     TKNERWKKITKFWLSLFAINFAIGVATGIIMEFEFGTNWANYSWFVGDIFGAPLAVEG
                     IMAFFLEATFFAVMFFGWDKVSKGFHLLSTWCVAIGSNLSAFWILVANGWMQYPVGMS
                     FNPDTARNEMQSFFEVALSPVAISKFLHTIGSGYVISALFVMGISAWFMLKGRHIIEA
                     KKSLVVGASFGLVCSIFLFFSGDESAYRVTQTQPMKLAAMEGVYQGEHRAGLVPFGIL
                     NPKKTIDNNESVFLFDITIPYALSILGNRDPNSFVPGIEDLIYGNESKGIEPMQNRID
                     RGKIAIQALKDYKLAKENNDTIAMANHKSILETHFKDFGYGYLEKPSDTIPPVALTFY
                     SFHIMVALGSFFFLLFIVTLYLTMANDIEKFRKVLWVCLLSIPLGYIAAEAGWIVAEV
                     GRQPWAIQDLLPVHIAATQLGKVNVQISFWIFAVLFTALLIAEVKIMLTQIKKGFDAH
                     AGHTPLMGKGEK"
     gene            complement(3496..3702)
                     /locus_tag="ACHFOB_001586"
     CDS             complement(3496..3702)
                     /locus_tag="ACHFOB_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002928786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4492 domain-containing protein"
                     /protein_id="HFN5800362.1"
                     /translation="MSQIFNFYKEGFKNLTLGKTLWKIIFIKLFVMFVILKLFVFDVN
                     FNSIFKSDKEKSTFVLKNLTLEGK"
BASE COUNT         1426 a          648 c          507 g         1123 t
ORIGIN      
        1 gataaattaa aatctttaaa ttctgcaaaa attttacttt acagtgttaa ttttgaagaa
       61 atagaaaatt tacaaagcca agataaatgg caagaagctg cacaaatttt gactcaatgt
      121 gctaaaaaat tagaacttgc aggggctaat tttataataa ttgcaactaa tactatgcat
      181 aaggttttta atgaaattca acaaaatata aatatcccta ttttgcatat tgcaaaaagc
      241 tctgctaagg ctttaaaaca agaaaacata caaaaaattg gtttattggg tactaaatac
      301 acaatgactc aggattttta taaaaaaatg ctgattgaag aaaatattag cgttattact
      361 cctagtgatg aagatataaa aatcgttaat gatattattt ttaatgagct ttgcaaaggt
      421 aaaatcaagc aagattctaa agaaaaatat ttaaatatta taaaaaaact acaagaaaaa
      481 ggggcaaaag gagtgctttt agcttgcact gaaattggtt tattaatatc caaaaatgat
      541 acaaatatca aaatttttga cacaagcctt attcacgccc ttgatgctgc taatgaagct
      601 ttaaaagatt tatgattaaa agatacccaa aaatgggcaa attgcaatat tttgaaaaga
      661 tttatactta tatcggttta aatcttatct tgctttatag tttgctatct ttttctaatt
      721 gattgatatt tagcattata aatttatagc tcagataaat tactaaaggc caagccaata
      781 aaaacaaagc atgtaacatt ttttctcctt aatatgcgtg atcatcgttt gcgatttctt
      841 cgcgtgtgat ttttacttta tccattgcat tccaaacata gataatataa gctaaaacaa
      901 aaggtacaag taaagataca taagccatga cgcttagagt ataatagctt gaacttgcat
      961 tttttaaagt taaagaactt tgtaaatcac ttaaagatgg gtaaaaagca ctttgaccta
     1021 aaccaatgct tgataataaa gcaaaaactg ttaaaaccgt tccaagtcct agggtaaaaa
     1081 tagctttaga gcaacctttt gttccttgaa ccatacctaa aagcactaaa atcacaccaa
     1141 taacaagcaa aacagcaaaa atcatttgat ttaagaaatt atataaatat aaattcgcac
     1201 tcatgcttac aactccattt gtatctacac taaaaccatc ttttaagaaa atccacgcta
     1261 aaaaacctaa gaaaaaaggt aaaaataaaa tactattgat catgagtttt ttcatagctc
     1321 ttattttgat attctcatca ttgatattgt tcataaaata cgctgcgcct aaaagccttg
     1381 ctaaaaatac taaagctaag cctaagagat aattaaaagg attaagtaaa agttctaagc
     1441 cgtgcaaagg attttgccaa gaaacaaaat tatgctcatt taagataaat tcagaaccgc
     1501 taaaaaaact acttactgca actccgatta aaaacacacc taaataacca ttaattttaa
     1561 gaaaaatttc ataggtttta gagccataaa cattattttc ttttttgcga tattcataag
     1621 ccacagcctg taaaataaaa caaaataaaa tacaaagcca agcccaataa gctccgccaa
     1681 aacttgtact ataaaaaagt ggaaaagctg caaaagctgc tccgccaaaa agtacgagag
     1741 ttgtaaaacc aagctcccat ttacgcccta aagaattaac tagcatagtt ttttcaagct
     1801 catccttgct aagctcatcg attaaagtct gtccaccttg aacaaaaaac ataaaaacta
     1861 aaagtccacc aagtaaactt aaaatcaacc accaataaat ttgcaaacct tcaagttcta
     1921 aaccaaaaaa cattattttt ctcctttgcc cataagtgga gtatgtcctg catgtgcgtc
     1981 aaaacctttt ttaatctgag taagcatgat tttaacttct gcaatcaata atgctgtaaa
     2041 aagtactgca aaaatccaaa atgaaatttg aacattgact tttccaagtt gtgttgctgc
     2101 gatatgtaca ggaagcaagt cttgaattgc ccaaggttgt ctgcctactt cagcaacaat
     2161 ccaacctgct tcagcggcaa tataacccaa tggaatggat aacaaacaca cccaaagtac
     2221 ttttctaaat ttctcaatat catttgccat ggtaagataa agcgtaacga tgaaaagtaa
     2281 aaagaaaaaa cttcctaaag caaccatgat atgaaagcta taaaaagtta aagccacagg
     2341 tggaatagta tcgcttggtt tttctaaata tccataacca aaatctttaa aatgagtttc
     2401 taaaatggat ttgtgatttg ccatagctat tgtatcattg ttttctttag caagtttata
     2461 gtcttttaga gcttgtatag cgatttttcc tctatcgata cgattttgca taggttctat
     2521 acctttgctt tcatttccat agatcaaatc ttcaattcct ggaacaaaag aatttggatc
     2581 acggtttcct aatatagaaa gagcgtaagg tatagtaatg tcaaataaaa acacactttc
     2641 gttattatct atggtttttt taggatttaa aattccaaaa ggtacaagtc ctgcacgatg
     2701 ttcaccttga taaacccctt ccatagctgc aagtttcata ggttgagttt gagttacacg
     2761 gtaagcgctt tcatctccgc tgaaaaacaa aaagattgaa caaaccaaac caaaactagc
     2821 tcctacaact aagctttttt tagcctcgat aatatggcgt ccttttaaca taaaccaagc
     2881 tgaaattccc attacaaata aagctgaaat tacataacca ctgcctatgg tatgtaaaaa
     2941 ttttgaaata gctacaggag aaagtgctac ttcaaaaaag ctttgcattt catttcttgc
     3001 tgtgtcaggg ttaaagctca ttcctacagg atattgcatc caaccatttg ccactaaaat
     3061 ccaaaaagca gaaagattac ttcctatagc cacacaccaa gttgaaagta agtgaaaacc
     3121 cttgcttact ttatcccagc caaaaaacat aactgcaaaa aaagtagcct ctaaaaaaaa
     3181 tgccataata ccttcaaccg ccaaaggtgc accaaaaata tcacccacaa accagctata
     3241 atttgcccag tttgttccaa attcaaattc cattataatg cctgtagcta caccgatagc
     3301 aaaatttata gcaaataatg aaagccaaaa tttggtgatt tttttccatc tttcattttt
     3361 agtttttaca tagatggttt ccatgatagc gatcataaaa gacaagccta aggttaaagg
     3421 cacaaacaaa aaatgataaa gtgcagttaa agcaaactgc gctcttgacc aatcaacgct
     3481 actaagttcg ttcatttatt ttccttcgag tgtaagattt ttgagtacaa aagtgctttt
     3541 ttctttgtcg cttttaaaaa tagaattaaa atttacatca aaaacaaaaa gttttaaaat
     3601 cacaaacata acaaaaagtt tgataaaaat aattttccaa agggtctttc caagagttaa
     3661 atttttaaaa ccttctttgt aaaaattaaa aatttgagag atgc
//
LOCUS       DAZBIH010000124         3619 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.125, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000124 DAZBIH010000000
VERSION     DAZBIH010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3619
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.125"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            63..920
                     /gene="cheP"
                     /locus_tag="ACHFOB_001587"
     CDS             63..920
                     /gene="cheP"
                     /locus_tag="ACHFOB_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002922676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheP"
                     /protein_id="HFN5800363.1"
                     /translation="MIGDMNELLLKSVEVLPPLPDTVSKLRKYVSEANSNIETMKVAE
                     IISSDPLMTAKLLQLANSPYYGFTREITTINQVITLLGVGNIINIVTADSIRDNFKID
                     VSPYGLNTQNFLKTCNEEATFIANWLNDEDKKLSHLLVPCAMLLRLGIVIFSNFLIQN
                     HKDKDFLAFLNKNENLALAENEFLGVDHISFLGFLLHRWNFDDVLIESICFVRTPHAA
                     REKVKKSAYALAITDHLFAPHDGSSPFNAKAAVALLKEAKTQGINFDLNNLLSKLPSK
                     AKENLNKED"
     gene            948..1427
                     /gene="cheQ"
                     /locus_tag="ACHFOB_001588"
     CDS             948..1427
                     /gene="cheQ"
                     /locus_tag="ACHFOB_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cheVAW transcriptional regulator CheQ"
                     /protein_id="HFN5800364.1"
                     /translation="MMKSLILPPNEFLDHYILNAEFHRFAGISKNAYKFWKNVEIGRY
                     QGTRIIFLHRNCILEKHQQALRQCSGLNGFVLASAFCSFTGLAPSHLVEKNNSSIYKL
                     LELKEICGIKFVNLKKFYDFLGLNYHQHIYIEKCHFFSPAPFEKRIKITESMCVGYY"
     gene            complement(1396..2706)
                     /locus_tag="ACHFOB_001589"
     CDS             complement(1396..2706)
                     /locus_tag="ACHFOB_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800365.1"
                     /translation="MSKTLNQKDIKVLGLSSLGGTLEFYDFIIFVFFANYISTNFFPK
                     DLSSFWQMFNTYGIFAAGYLARPLGGVILAHFGDKFGRKRMFMISILLMVIPTFTLAF
                     IPNYESIGFLCIVLLVFIRICQGIAIGGELPGAWVFVYEHAPQGQKRTYLGILTASVV
                     GGILLGSLVFLIMNKIYTQEELHEWAWRIPFFLGGIFGIISAYLRKFLRETPVFEQMK
                     KDKALEKFPLKEVFKKAKMGIVLSMMITWVLTGCIVVMILLMPSYMAKILQINTSIQT
                     YLQIGGILLICLGCIISGILADKIDIIKSCVFFSVFFGIVSLLYFNTLYRQNADFNLV
                     ACLYLLVCFFSGVMNFCPLIMSEVFDAKIKFSGLSFSYNIAYAIAGGLTPQLAFFLHS
                     FALDNLSNFWRFSLGIYVFFLAIIALLCAFIFSYLNNTQRTYSQ"
     gene            complement(2709..2864)
                     /locus_tag="ACHFOB_001590"
     CDS             complement(2709..2864)
                     /locus_tag="ACHFOB_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="highly acidic protein"
                     /protein_id="HFN5800366.1"
                     /translation="MAYEDEEDLNYDDYENEDEEYPQNHHKNYNYDDDDYEYNDDNND
                     DDFYEMD"
     gene            2957..3430
                     /gene="moaC"
                     /locus_tag="ACHFOB_001591"
     CDS             2957..3430
                     /gene="moaC"
                     /locus_tag="ACHFOB_001591"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0061799 - cyclic pyranopterin
                     monophosphate synthase activity [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HFN5800367.1"
                     /translation="MKLSHLDEKNHPKMVDVSDKNITSRIATASGMIYMSQEAFDVIK
                     NNTAKKGPVLQTAIIAAIMGAKKTSEIIPMCHPLMLSKVETDIMEFVKECAFKLIVTV
                     KCEGKTGVEMEALSGVSIGLLTIYDMIKAIDKSMRITDIVLESKEGGKSGKFVRS"
     gene            3408..>3619
                     /locus_tag="ACHFOB_001592"
     CDS             3408..>3619
                     /locus_tag="ACHFOB_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF493 family protein"
                     /protein_id="HFN5800368.1"
                     /translation="MVNLCDLKKEPQINYPTFWDYKVIFEVHVKASEIFQEILGQREY
                     KFEHSNSSASGKYQSYLLNVYVDSKK"
BASE COUNT         1350 a          515 c          541 g         1213 t
ORIGIN      
        1 agtaaattaa aatttagata taattgcaaa ttataataat attaattaag gataaatcaa
       61 atatgattgg agatatgaat gagcttttat taaaaagcgt tgaagtattg ccacctttac
      121 ctgatactgt aagtaagtta agaaaatatg tgagcgaggc taattcaaat atagaaacta
      181 tgaaagttgc tgaaatcatt tcaagtgatc cgttgatgac ggctaagctt ttgcaattag
      241 caaattctcc ttattatggt tttacaagag aaattacaac cataaatcaa gtaattactt
      301 tattaggcgt tggtaatatc atcaatatag ttacggctga ttccattaga gataatttta
      361 aaatagatgt ttcaccttat ggtttaaata ctcaaaattt tttaaaaacg tgcaatgaag
      421 aggcaacttt tattgccaat tggcttaatg atgaagataa aaaactttct catcttttag
      481 ttccttgtgc aatgctttta aggcttggta ttgttatttt ttcaaatttt cttatacaaa
      541 atcataagga taaggatttt ttagcttttt taaataaaaa tgaaaatctt gctttagcgg
      601 agaatgaatt tttaggcgta gatcatattt ctttcttggg atttttgtta catcgttgga
      661 attttgatga tgttttgatt gaaagtatat gctttgttcg cactcctcat gctgctcgcg
      721 aaaaagtgaa aaaatccgct tatgctttag caataacaga tcatcttttt gctccgcatg
      781 atggctcttc tccatttaac gcaaaagctg cagttgcttt acttaaagag gcaaaaactc
      841 aaggaattaa ttttgattta aacaatcttt tatctaagct tcctagcaaa gctaaggaaa
      901 atttaaacaa agaagattaa agagcctttt taaggctcta aattgtagtg atgaaaagtt
      961 taatcttacc tcctaatgaa tttttagatc actatatttt aaacgccgaa tttcatcgtt
     1021 ttgctggaat ttcaaaaaat gcttataaat tttggaaaaa tgtagaaata ggtagatatc
     1081 aaggaacaag aattatattt ttgcatagaa attgcatttt agaaaaacat cagcaagctt
     1141 taaggcaatg tagtggttta aatggttttg tattggcaag tgctttttgt tcttttactg
     1201 gattagcccc ctctcattta gtggaaaaaa ataattcttc tatttacaaa cttttagagc
     1261 ttaaggagat ttgtgggatt aaatttgtta atctaaaaaa attttatgat tttttagggc
     1321 taaattatca tcagcatatt tatatagaaa aatgccattt ttttagccca gctccttttg
     1381 aaaagcgtat taaaatcact gagagtatgt gcgttgggta ttattaagat aagaaaaaat
     1441 aaatgcacat agcaaagcta taatagccaa aaagaaaaca taaatcccca aagaaaaacg
     1501 ccaaaaatta cttaaattat ctaaggcaaa actatgtaag aaaaaagcaa gttgcggagt
     1561 taaacctcca gctatagcat aagcaatatt atatgaaaaa gaaagtcctg aaaatttaat
     1621 ttttgcatca aatacttcac tcattattaa aggacaaaaa ttcatcactc cgctaaaaaa
     1681 acatacaagt aaatataagc aagctactag gttaaaatca gcattttgtc tatatagagt
     1741 attaaaataa agcaagctta caattccaaa aaaaacacta aaaaatacac aagatttgat
     1801 aatgtctatt ttatccgcta aaattccact tataatacac cctaggcaaa taagtaaaat
     1861 tccacctatt tgaagatagg tttgtataga agtgttaatt tgaagtattt ttgccatata
     1921 gctaggcata agcaaaatca ttacaacaat acaacctgtc aaaacccaag taatcatcat
     1981 agaaagaaca attcccattt tagctttttt aaacacttct tttaaaggaa atttttctaa
     2041 agccttgtct tttttcattt gttcaaaaac aggagtttct cttaaaaatt ttctcaaata
     2101 agcagaaata atcccgaaaa ttccacctaa aaagaatgga attctccaag cccattcatg
     2161 aagttcttct tgggtataaa ttttattcat aattaaaaaa actaaactac ctaataaaat
     2221 tccacctaca actgaagcgg ttaaaattcc caaataagtt cttttttgac cttgtggtgc
     2281 gtgttcgtat acaaaaaccc aagctccagg aagttccccg cctatagcaa tgccttgaca
     2341 aatgcgtata aaaactaaaa gcacaataca aagaaaacct atgctttcat aatttggaat
     2401 aaaagctaga gtaaaagttg gaataaccat taacaaaata ctaatcataa acattctttt
     2461 gcgtccaaat ttatctccaa aatgcgccag tatcacacct cccaagggac gcgctaaata
     2521 tccagccgca aatattccat aagtattaaa catttgccaa aaactactta aatcttttgg
     2581 aaaaaagttt gttgaaatat aatttgcaaa aaatacaaaa ataataaaat cataaaattc
     2641 taaagttcca cctaatgatg aaagtcctaa aacttttata tctttttggt taagggtttt
     2701 gctcattctt aatccatctc ataaaaatca tcatcattgt tatcatcatt gtattcataa
     2761 tcatcatcat cgtaattata atttttatgg tgattttgtg gatattcttc atcttcgttt
     2821 tcataatcat cgtaatttaa atcttcttca tcttcataag ccattgtttt ctccttaaat
     2881 aaaaatacaa agcttatttt atcttaaatt tgtttggttt tgctataatt tttataattt
     2941 tttaaaaggt gaatttatga aattaagtca tttagatgaa aaaaatcatc ctaaaatggt
     3001 agatgtaagc gataaaaata ttacttcaag aatagccaca gctagtggta tgatatatat
     3061 gagtcaagaa gcttttgatg taattaaaaa caatactgca aaaaaaggtc ctgttcttca
     3121 aacagctatt attgcggcta taatgggggc taaaaaaaca agtgaaatta ttcctatgtg
     3181 ccatccttta atgctttcta aagtcgaaac tgatattatg gaatttgtta aagaatgtgc
     3241 atttaagctt attgtaacag ttaagtgtga aggtaaaaca ggagttgaaa tggaagcttt
     3301 aagtggggtt agtataggac ttttaactat atatgatatg attaaggcta tagataaatc
     3361 aatgaggatt acggatatag tgcttgaaag taaagaagga ggcaaaagtg gtaaatttgt
     3421 gcgatcttaa aaaagaacct cagatcaatt atcctacttt ttgggattat aaggtgattt
     3481 ttgaggtgca tgttaaggca agtgaaattt ttcaagaaat tttaggccaa agagaatata
     3541 aatttgaaca ttcgaattca agtgcgagtg gaaaatatca aagttattta ttaaatgttt
     3601 atgttgatag caaaaaaga
//
LOCUS       DAZBIH010000125         3607 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.126, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000125 DAZBIH010000000
VERSION     DAZBIH010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3607
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.126"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1539
                     /locus_tag="ACHFOB_001593"
     CDS             <1..1539
                     /locus_tag="ACHFOB_001593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN5800369.1"
                     /translation="LENFKNYISKNPSHAQEKITPIANKILKELNSIKNDFFKALNKP
                     ENLMIKDPNILKQTATAFEKLENTLKNILGNQASKIQDKENILENLLSNKENMKEEKL
                     NHNTKNQDEEKHIKASKEETLTDDTKTDIKQDLKNEENSHAKETDIKEDENLDSDIKT
                     HEEDTQDTKNDIQNNETENKPDNDIKNFTPNQEKIKDEKQEKSKENIKENPKFYETKT
                     ENKTSINTNTNTSNPNTNNTQNLNNSQNIQSNNNQTMQNIFKNQEFIKQNIIKNLAFN
                     VENLDLEQVQDLSKNLSNLSRRLNESLKELEPYTQNAKLNQAELKNLEHKLNLSTKDL
                     AQIKPKTEQDIAESLHHDVKSTLLQISNLAKNEGNEAIYNQANRLLAQIEINQLMSLA
                     NDSINTYLPFSWDDLNDSKIMFRRGKKDKFFAQIKLEFAKLGDLEILISLNNEKYIDI
                     NIMAENIEFRKTIYENAHELKRNINKAGLLSANFFVGDIIRSKFDTRNMKNLDLEMGM
                     DKKV"
     gene            1536..1817
                     /locus_tag="ACHFOB_001594"
     CDS             1536..1817
                     /locus_tag="ACHFOB_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FlhB-like flagellar biosynthesis protein"
                     /protein_id="HFN5800370.1"
                     /translation="MSKIKRSIKKAVALGYQKEKNSAPKVLASGKGESAAKIISLAKE
                     HGVPIKEDEDLIEILSKLDLGDEIPPNMYKAVAEVFAFIYQMANKTPKN"
     gene            complement(1814..2614)
                     /locus_tag="ACHFOB_001595"
     CDS             complement(1814..2614)
                     /locus_tag="ACHFOB_001595"
                     /EC_number="4.1.1.65"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004609 - phosphatidylserine decarboxylase
                     activity [Evidence IEA];
                     GO_process: GO:0008654 - phospholipid biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylserine decarboxylase"
                     /protein_id="HFN5800371.1"
                     /translation="MSFSKESSRLFGFVAGIKFPKMIQKVINENYVKYFNIDMSEFKA
                     PCEYESLNALFTRTLHIPRKLEEGFISPSDGKILECGSTFLANEEHFAFSIKGHTYSI
                     EELLKDSFEKDELKNGLDYVNIYLSPKDYHRYHSPCDMQILSATYTSGALYSVNEKHL
                     ERISNLYVKNERVSLKCQNEKGIFWLVFVGAQNVGKMRFNFDASIQTNAKISHNFTRK
                     YENLNLKKGEELGNFELGSTIVLISQKGLLTFNLKAGQGIKFGEKIAD"
     gene            complement(2611..>3607)
                     /locus_tag="ACHFOB_001596"
     CDS             complement(2611..>3607)
                     /locus_tag="ACHFOB_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HFN5800372.1"
                     /translation="IVLFLAQAVFLIFRRDEYLSDTWYEILAMLYAPTYCLFFMTLAW
                     DFIKLILALIGKRDKKYNLILRLIFELSLIVLSVFLIYISINNALKIPEVKSVDVEIP
                     NLKQDLKIAMLTDIHLGKNLHENFLDKLITKVNLQSPDMVVIVGDLIDTNPKDLKNYI
                     SKLNDFNSTYGTFYALGNHEYYHGINEVLDLLRKHTNMKILVNQNLDLGFINIAGLGD
                     LAGLNKGLYAPDLARIKVDLNTSKASILLTHQPKTALLYDLSDFDLVLSGHTHGGQIF
                     PFMFLVKLQQGFVHGLYNLGEKTKLYVSSGAGFWGPSLRVFAPSEIVILNLKGKK"
BASE COUNT         1490 a          583 c          430 g         1104 t
ORIGIN      
        1 ttggaaaatt ttaaaaatta tataagtaaa aatcccagtc atgctcaaga aaaaatcacc
       61 cctatagcta ataaaatttt aaaagaatta aattccatca aaaatgattt tttcaaagct
      121 cttaataagc cagaaaattt aatgataaaa gatccaaaca tccttaagca aactgctacc
      181 gcctttgaaa aacttgaaaa tactttaaaa aatatactag gcaatcaagc ttctaaaata
      241 caagataaag aaaatatttt agaaaatctt ttaagtaaca aagaaaatat gaaagaagaa
      301 aaacttaatc ataacacaaa aaaccaagat gaagaaaaac atataaaagc atcaaaagaa
      361 gaaactctca cagatgatac taaaaccgat attaagcaag atttaaaaaa cgaagaaaat
      421 tcgcatgcaa aagaaactga tataaaagaa gatgaaaatt tagattctga tataaaaact
      481 cacgaagaag atactcaaga tacaaaaaat gatattcaaa ataatgaaac agaaaataag
      541 ccagacaatg atataaaaaa ttttactcca aaccaagaaa aaatcaaaga tgaaaaacaa
      601 gaaaaatcaa aagaaaatat caaagaaaat ccaaaatttt atgaaacaaa aacagaaaac
      661 aaaacttcaa tcaatacaaa taccaacact tcaaatccta acacaaacaa tacgcaaaat
      721 ttaaataatt ctcaaaatat tcaatctaac aataaccaaa ctatgcaaaa tatttttaaa
      781 aatcaggaat ttataaaaca aaatattata aaaaatttag catttaatgt ggaaaattta
      841 gatctagaac aagtgcaaga tttaagtaaa aatttaagca atctttctcg tagacttaat
      901 gaaagcttaa aagaacttga accctatact caaaatgcca agcttaatca agcagaactt
      961 aaaaatctcg aacacaaact caatctttct accaaagatc tagcgcaaat taaaccaaaa
     1021 acagaacaag atatagctga atctttacat catgatgtaa aatcaacact tttgcaaatt
     1081 tcaaatttag ctaaaaatga aggcaatgaa gctatatata atcaagctaa tcgtctttta
     1141 gcacaaattg aaatcaatca gcttatgtct ttagctaatg attctatcaa tacttatctg
     1201 cctttttctt gggatgattt aaatgattct aaaattatgt ttagacgcgg aaaaaaggat
     1261 aaattttttg ctcagattaa actcgaattt gcaaaacttg gggatttgga aattcttatt
     1321 tctttaaata atgaaaaata tatagatatt aatattatgg cagaaaatat tgaatttaga
     1381 aaaaccatct atgaaaatgc ccatgagctt aaaagaaata tcaataaagc aggactttta
     1441 agtgcaaatt tctttgtagg tgatatcata agaagtaaat ttgatactag aaatatgaaa
     1501 aatttagatc ttgaaatggg tatggataaa aaagtatgag caaaatcaaa agatcgatta
     1561 aaaaagctgt agctctaggc tatcaaaaag aaaaaaactc tgccccaaaa gtgcttgcaa
     1621 gtggcaaagg tgaaagtgct gctaaaatta tttctttagc caaggaacac ggagttccca
     1681 ttaaagaaga tgaagattta atagaaattt taagcaaact tgacttaggc gatgaaattc
     1741 cacctaatat gtataaagcc gtagctgaag tttttgcctt tatctatcaa atggcaaata
     1801 aaactcctaa aaactaatcc gctatttttt ctccaaattt aataccctgc cctgctttta
     1861 aattaaaagt taaaagtcct ttttgagaga ttaaaactat agtagaaccc agttcaaaat
     1921 ttcctagttc ttcgcctttt tttagattta aattttcata ttttctagta aaattatgag
     1981 aaattttagc attagtttgt atgcttgcat caaaattaaa acgcattttt cctacatttt
     2041 gcgctcctac aaaaacaagc caaaaaatac ctttttcatt ttgacatttt aaactcactc
     2101 tttcattttt tacatataaa ttactaatgc gttccaaatg cttttcattt acactataaa
     2161 gggcgccgct tgtgtaagtt gcgcttaaaa tttgcatatc acaagggctg tgataacgat
     2221 gataatcttt tggagaaaga tagatattga cataatcaag cccattttta agctcatctt
     2281 tttcaaagct atcttttaaa agctcctcaa tgctataagt atgccctttt atagaaaaag
     2341 caaaatgttc ttcatttgcc aaaaaagtac ttccacactc taaaatttta ccatcacttg
     2401 gactgataaa accttcttca agttttcttg gaatgtgcaa agttcttgta aaaagagcat
     2461 ttaaactctc gtattcacaa ggagctttaa attcactcat atcgatatta aaatacttaa
     2521 cataattttc attaataact ttttgtatca ttttaggaaa tttaatcccc gctacaaaac
     2581 caaaaagcct cgaactttct tttgaaaaac tcattttttt ccttttaaat ttaaaatcac
     2641 tatttcactc ggagcaaaaa ctctaagact tggcccccaa aatcctgcgc cactactcac
     2701 ataaagctta gttttttctc ctaaattata aagcccatga acaaaacctt gctgaagttt
     2761 aactaaaaac ataaaaggaa aaatttgccc tccatgcgta tgcccactta aaacaaggtc
     2821 aaaatcactt aaatcataaa gcaaagctgt tttaggttga tgtgtgagta aaatactagc
     2881 tttacttgta tttaaatcca cttttattct tgctaaatca ggagcatata aacccttatt
     2941 aagtccggct aaatctccaa gtccagcaat atttataaaa cctaaatcta aattttgatt
     3001 gactaaaatt ttcatattag tatgttttct aagtaaatcc aaaacttcat tgatgccatg
     3061 ataatactca tgatttccca aagcataaaa agttccgtaa gtggagttaa aatcattaag
     3121 ttttgagatg taatttttta aatctttagg attagtatca atcagatctc ctactattac
     3181 aaccatatca ggactttgca aattcacttt agtgatgagc ttatctaaaa aattttcatg
     3241 caaattttta cccaaatgta tatcggtaag catggcaatt tttagatctt gtttaagatt
     3301 tggtatttca acatcaacac tctttacttc aggtattttt agagcattat ttatacttat
     3361 ataaattaaa aacacactta aaactataag agaaagctca aaaatcaaac gcaaaataag
     3421 attatatttt ttatctcttt tacctataag agctaaaatc aatttaataa aatcccaagc
     3481 taaagtcata aaaaacaaac aataagttgg cgcataaagc atggctaaaa tttcatacca
     3541 agtatcactt aaatattcat ctctacgaaa tattaaaaac acagcttggg ctaaaaaaag
     3601 cacaata
//
LOCUS       DAZBIH010000126         3584 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.127, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000126 DAZBIH010000000
VERSION     DAZBIH010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3584)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3584)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3584
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.127"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            134..1915
                     /locus_tag="ACHFOB_001597"
     CDS             134..1915
                     /locus_tag="ACHFOB_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoX family phosphatase"
                     /protein_id="HFN5800373.1"
                     /translation="MERRLFLKGSALGSMVAFFASSNLSAAMLKDKDLLGFKAVSAST
                     QDKVIVPQGYEAKVLISWGDPLFSKAKPYDENKIIDMNAVKNAHLVFGDDNDGMSFFP
                     LSKNRGILAVNNEYINPEIMFNHHGKNLSKEDILYEQASVGVSILEIEKKGDDWTVVL
                     DSKYNRRIDANTKMQVSGAAKKEVLKNEKFVHGTFANCANGQTPWGTYITCEENFDDF
                     FGSSDENLEFNDAFKRYGFNKTSLYGWEKFDERFDLAKNIDEANRFGWIVEINPFDAK
                     STPVKRTSLGRFKHENAEIIVEKDGSVIVYMGDDEMNEFIYKFVSKHKYKKGADTSKI
                     LDEGTLYVGQFNGNMGDFKGQGKWIALEYGKNGLDEKNGFKSQAQVLINTRLAASIVG
                     ATPMDRCEWIASHKQSGSKEVFATLTNNKNRQEPNAANPRTKNVYGQILKWMPKNSHK
                     DDDFTWEIFALAGNPDNQQGLYKGSNNITSENKFNSPDGLKFDRDGRLWIQTDGSYSN
                     KDEYEGMGNNCMLAANPKTGEIRRFLTGPIACELTGIAFSEDYTTMFVGIQHPGEGLK
                     GSTFPYGKTPRSSVMMIRKLDGGVIGS"
     gene            complement(1953..2891)
                     /gene="trxB"
                     /locus_tag="ACHFOB_001598"
     CDS             complement(1953..2891)
                     /gene="trxB"
                     /locus_tag="ACHFOB_001598"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343606.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADPH) activity [Evidence IEA];
                     GO_function: GO:0071949 - FAD binding [Evidence IEA];
                     GO_process: GO:0019430 - removal of superoxide radicals
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HFN5800374.1"
                     /translation="MLDVAIIGGGPAGLSAGLYATRGGLKNVVMFEKGMPGGQITSSS
                     EIENYPGVAQVMDGISFMAPWNEQCMRFGLKHEMVGVEQILKNSDGSFTIKLEGGKTE
                     LTKAVIVCTGSAPKRAGFKGEDEFFGKGVSTCATCDGFFYKNKEVAVLGGGDTALEEA
                     LYLANICSKVYLIHRRDEFRAAPSTVEKVKKNEKIELITSASVDEVYGDKMGVTGVKV
                     KLKDGSIRDLNVPGIFTFVGLNVRNEILKQDDGKFLCNMEEGGQVSVDLKMQTSVAGL
                     FAAGDLRKDAPKQVICAAGDGAVAALSAMAYIESLH"
     gene            complement(3025..3339)
                     /gene="trxA"
                     /locus_tag="ACHFOB_001599"
     CDS             complement(3025..3339)
                     /gene="trxA"
                     /locus_tag="ACHFOB_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0015035 - protein-disulfide reductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HFN5800375.1"
                     /translation="MGKYIELTSDNFAQAKEGVALVDFWAPWCGPCRMLAPVIDELAN
                     DFDGKAKICKVNTDEQGDLAAEFGVRSIPTLIFFKNGEVVDQLVGAQSKQAISDKLNS
                     LL"
     gene            complement(3396..>3584)
                     /locus_tag="ACHFOB_001600"
     CDS             complement(3396..>3584)
                     /locus_tag="ACHFOB_001600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800376.1"
                     /translation="FIEVKFTQNDYEVSERLDRKKLEKILKTIEFYHLKNGISSDFQI
                     DLICIKNDVIQFCENISF"
BASE COUNT         1258 a          572 c          564 g         1190 t
ORIGIN      
        1 tagtcattta tacctagtga aaaactaggt ataaattttt tcttcaattt aaatttttca
       61 tcaaagtttc taaaaagttt ccaaatattt ttatgcttcc attgttttaa atttcaatat
      121 ggggtaaaaa caaatggaaa gaagattgtt tttaaaaggt tcagctttag gttctatggt
      181 ggcttttttt gcaagttcaa atttaagtgc tgctatgctt aaggataagg atttgctagg
      241 ttttaaagct gttagtgcaa gcacacaaga taaagttata gtaccacaag gttatgaagc
      301 aaaggtttta atttcttggg gtgatccact ttttagtaaa gcaaaacctt atgatgaaaa
      361 taaaatcatc gacatgaatg cagttaaaaa tgctcatttg gtttttggag atgacaatga
      421 tggtatgagt ttttttccac tttcaaaaaa cagaggaatt ttagccgtta ataatgaata
      481 tataaatcct gaaatcatgt ttaatcatca tggtaaaaat ttaagcaaag aagatatttt
      541 atatgagcaa gccagtgtgg gtgtgagtat cttagaaatc gaaaaaaaag gtgatgattg
      601 gactgtggtt ttagactcta agtataaccg cagaatcgat gcaaacacta aaatgcaagt
      661 aagtggagca gctaaaaaag aagttttaaa aaatgaaaaa tttgttcatg gaacttttgc
      721 aaattgtgca aatggacaaa caccttgggg aacttatatc acctgtgaag aaaattttga
      781 tgattttttt ggaagttcag atgaaaatct agaatttaat gatgccttta agcgctatgg
      841 atttaacaaa actagtcttt atggatggga aaaatttgat gaaagatttg atttagctaa
      901 aaatatcgat gaagccaatc gttttggttg gatagtggaa atcaatcctt ttgatgcaaa
      961 aagcacacct gttaaaagaa cttctttagg gcgttttaaa catgaaaatg cagaaattat
     1021 cgtagaaaaa gatggttctg ttatagttta tatgggtgat gatgagatga atgaatttat
     1081 ttataaattt gttagcaaac ataaatacaa aaaaggtgct gatacaagta aaattttaga
     1141 tgaaggcact ttgtatgtag gacagtttaa cggcaatatg ggagatttta aaggacaggg
     1201 aaaatggata gctttagaat atggcaaaaa cggcctagat gaaaaaaatg gttttaagtc
     1261 tcaagctcaa gtactcatca atacgcgtct tgctgcaagc attgtaggtg caactcctat
     1321 ggatagatgt gaatggatag caagccataa acaaagcggt tctaaagaag tatttgcaac
     1381 actaacaaat aataaaaatc gccaagaacc taatgcagca aatccaagaa ctaaaaatgt
     1441 ttatggacaa attttaaaat ggatgccaaa aaattctcat aaagacgatg attttacttg
     1501 ggaaattttt gctcttgctg gaaatcctga taaccaacaa ggcttatata aaggctcaaa
     1561 taatattaca agtgaaaata aattcaattc tcctgatgga cttaaatttg atagagatgg
     1621 aagactttgg atacaaacag atggatctta ttctaacaaa gatgaatacg aaggcatggg
     1681 aaataactgc atgctagcag caaatccaaa aacaggggaa atcagacgct ttttaacagg
     1741 acctattgct tgtgaattaa cagggattgc ttttagtgag gattatacta caatgtttgt
     1801 aggcatacaa catccaggag aaggtttaaa aggtagtact tttccttatg gaaaaacgcc
     1861 aagatcgagt gtaatgatga taagaaaact tgatggtgga gtgataggaa gctaaataaa
     1921 aataaagttg cttttagcaa ctttataaaa tcttaatgca agctttctat ataagccata
     1981 gcacttaatg cagctacagc tccatcacct gcagcacaaa tcacttgttt tggtgcatct
     2041 tttctaagat ctcctgcggc aaaaagtcca gcaacactag tttgcatttt aagatcaaca
     2101 cttacttgcc caccttcttc catattgcat aaaaacttac catcgtcttg ttttaaaatt
     2161 tcatttctta cattaagacc aacaaaagta aaaattcctg gaacatttaa atctctaata
     2221 ctaccatctt ttaattttac ttttacccca gtaacaccca ttttatcacc atatacttca
     2281 tctacacttg cactagtaat gagttctatt ttttcatttt tcttaacttt ttctactgta
     2341 gatggagctg ctctaaattc atctctgcgg tggataagat aaactttaga acaaatattt
     2401 gctagataca aagcttcttc taaagccgta tctccaccac ctaaaactgc aacttcttta
     2461 tttttataaa aaaatccatc acaagttgca caagtgctta caccttttcc aaaaaattca
     2521 tcttcgcctt taaaacctgc tctttttgga gctgaacctg tacaaactat cacagcttta
     2581 gtaagttctg ttttaccacc ttctaatttg atggtaaaac ttccatcgct attttttaaa
     2641 atttgctcta ctccaaccat ttcatgtttt aaaccaaaac gcatacattg ttcattccaa
     2701 ggagccataa aagaaattcc atccataact tgggctacac ctggataatt ttctatttca
     2761 gaacttgagg taatttgtcc accaggcata cctttttcaa acattactac attcttaaga
     2821 ccacctctag ttgcataaag tccggcacta agtccagcag gacctccacc tatgattgct
     2881 acatctaaca tttatatttc ctttatattg aattttatta ttaataatga tataaaaatt
     2941 attcttaata gtagttaata aaaattatta tttagtataa atttgaaatt tttaagaaga
     3001 aggctagtta tactagcctt tagtttatag taaagagttt agtttatcac taattgcttg
     3061 tttagattgt gcaccaacga gttgatctac aacttcacca tttttaaaga aaataagtgt
     3121 aggaatagag cgaacaccaa attcagctgc taaatcacct tgttcatctg tatttacttt
     3181 gcaaatttta gctttaccat caaagtcatt tgcaagttca tcaataactg gagcaagcat
     3241 tctacaaggt ccgcaccatg gagcccaaaa atcaactaaa gctacacctt cttttgcttg
     3301 agcaaaatta tcacttgtta attcaatata ttttcccata atttttcctt tctttaattt
     3361 ttgtctaatt gtattttatt tttttaaata tcagcttaaa aacttatatt ttcgcaaaat
     3421 tgtatcacat catttttaat gcaaatcaga tcaatctgaa aatccgatga aattccattt
     3481 ttaagatgat aaaattctat agtttttaaa attttttcaa gtttttttct atccaaacgc
     3541 tcggaaactt cataatcatt ttgagtaaat ttaacctcta taaa
//
LOCUS       DAZBIH010000127         3575 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.128, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000127 DAZBIH010000000
VERSION     DAZBIH010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3575
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.128"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..692
                     /locus_tag="ACHFOB_001601"
     CDS             <1..692
                     /locus_tag="ACHFOB_001601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN5800377.1"
                     /translation="TQKDFNLNKEPKNNNKENKDIKQNFFDQKLNFENLNKTQVVQNK
                     ENNANFNNNATNKETFTQEQTKTHSENVDKNSLDELNSLVKDLNKVTQNNARNITPKE
                     TLQYFSQDLKEAVDQYKAPITKLSITLNPNNLGEVEVTLIQRGNNLHINFNSNTNAMN
                     LFIQNQAEFKNSLVNMGFTGLEMNFSDQGKREQNQNQGKNRSGYGFKDALDGKNESEK
                     VNLELVLAKYF"
     gene            746..1630
                     /locus_tag="ACHFOB_001602"
     CDS             746..1630
                     /locus_tag="ACHFOB_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod modification protein"
                     /protein_id="HFN5800378.1"
                     /translation="MISSSDWNLNTTATTSGTTSSGSTSGTTRTDSSSSSGIVSNPNA
                     TLDKDAFLKLLLIELQHQDPTDPMDSDKMLTQTSQLSALEMQQNTNTTMQKMVETMQK
                     LSDSFSTSMSTSALGAIGKMATVSDNKIKLTGADELIALKMYLPEDSDENGVTLEIYD
                     SNNKLVFSEKSDAKSISQGLFTMEWPGRNNDGVYAGDGEYTVKMVYNNKNGEKITANY
                     GTYPIEGVVFKDGVAYAKMAGQEVPFDAIQEITDYKLGSSSSTGGSGSSGDSSGGSSD
                     GDSSGSGSTEDGDKEEKA"
     gene            1634..3271
                     /locus_tag="ACHFOB_001603"
     CDS             1634..3271
                     /locus_tag="ACHFOB_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HFN5800379.1"
                     /translation="MMNSFYNGISGVKSNSFGIDITANNIANVNTTGFKYSDAQFKDI
                     FYTTITTQSTNPAQGGYGSGAASSQVVFEQGSPVASDGEFDVALQGKGFFGVLGADGN
                     AYYTRNGSFRRDANGYLVDSYGNFVLGTMNPAFTGINYSDRVAGLMGDYLNTGTPVNN
                     GFTVNSNNSFSIGTTASQGAIKVPVNMYLPPQVTQNVKWSGSLNTNTTTEVVKVDLDP
                     SKFNITKTEDGKYVVSGSVSKEDVFSAKAGDRIILNFTDDNGVKTSFEATLDENLNFK
                     SNELDLKGLDENSIKLDTAQISTEQQKANKDILESPIYNADGSKSTLRVTLERVLPQE
                     GDNIQYKAIAQIYDSNGNAVGNPTEGNMVFDKNGALLQNNITSIANPNGGTINIDLGS
                     PYDANKPGSGYSGIYIKQGVEKNVVTQQDGVAEGFFEQYNISDDGSIVAQFSNGKNAI
                     VGKLALYNFINEQGLVAMGDNIFAATANSGDASFIMKDGQVVNTAKFKGGFLEQSNVD
                     LSAELSNLIVTQKAFDASSKSITTSDQMIQKAINMKR"
     gene            complement(3275..>3575)
                     /locus_tag="ACHFOB_001604"
     CDS             complement(3275..>3575)
                     /locus_tag="ACHFOB_001604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002888847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF342 domain-containing protein"
                     /protein_id="HFN5800380.1"
                     /translation="FIKLKYQIDAKLNFLNEMVYNVKIYIKAENIGEDNFLKFYPNTN
                     TNLELKHHINLKDYEKVLYLEKGQQVSYIKSSHNYSESDIEEIKIIFEKLEKDNS"
BASE COUNT         1312 a          496 c          656 g         1111 t
ORIGIN      
        1 taacacaaaa agattttaat ctaaataaag agcctaaaaa caacaacaaa gaaaataaag
       61 atataaaaca aaatttcttt gatcaaaaat taaattttga aaatttaaat aaaactcaag
      121 tagttcaaaa caaagagaat aatgcaaatt ttaataataa tgctactaat aaagaaactt
      181 ttactcaaga gcaaacaaaa acgcacagtg aaaatgtaga taaaaatagc ttagatgagt
      241 taaattcttt agtcaaagat ttaaataaag taacacaaaa caatgctcgc aatatcactc
      301 ctaaagaaac tttgcagtat ttttcacaag atttaaaaga ggctgtggat caatacaaag
      361 cacctattac taaacttagt atcactctaa atcctaataa tcttggagaa gtggaggtaa
      421 ctttgataca aagaggtaat aaccttcata tcaatttcaa ctccaatacc aatgcaatga
      481 atttgtttat ccaaaatcaa gccgagttta aaaattctct tgtaaatatg ggatttactg
      541 gacttgaaat gaattttagt gatcaaggta aaagagagca aaatcaaaat caaggaaaaa
      601 atcgtagtgg atatggtttt aaagatgctt tagatggaaa aaatgaaagt gaaaaagtca
      661 atctagagct tgttttagcg aagtattttt aaattggaac acttattgct taaataataa
      721 aaaactaaat aaaaaggagt ttataatgat atcatcatcg gattggaatt taaataccac
      781 tgctacaact tcaggtacta cttcttcagg aagtactagt gggacaacta gaacagattc
      841 aagcagtagc tcaggaatag tgagcaatcc aaacgctacc ttagataagg atgcgttttt
      901 aaaacttctt ttgatagagc ttcaacatca agatccaaca gatcctatgg atagcgataa
      961 aatgcttact caaacttcac agcttagcgc acttgaaatg cagcaaaata ccaatacaac
     1021 tatgcaaaaa atggttgaaa ctatgcaaaa gctttctgat tcttttagta caagtatgag
     1081 tacttcagct ttaggggcta ttggtaaaat ggcaactgtt tcagataata aaatcaaact
     1141 tacaggtgca gatgagctta tcgctcttaa aatgtatttg cctgaagatt ctgatgaaaa
     1201 cggtgttacg ctagaaattt atgatagcaa taataaactt gttttcagtg aaaaaagcga
     1261 tgctaaatct atttctcaag gtttatttac tatggagtgg ccaggaagaa ataacgatgg
     1321 ggtttatgca ggtgatggtg agtacactgt taaaatggtt tataataata aaaatggtga
     1381 aaaaatcact gcaaattacg gaacttatcc tatcgaaggt gttgttttta aagatggtgt
     1441 tgcctatgca aaaatggctg gacaagaagt tccttttgat gcaatacaag aaataacaga
     1501 ttataagctt ggttcatctt catctactgg aggaagcggt tcaagtggag actcaagtgg
     1561 tggttcaagc gatggagatt cttctgggtc tggatctaca gaagatggcg acaaagagga
     1621 aaaggcataa gccatgatga attcatttta taatgggatt tctggagtaa aaagcaatag
     1681 ctttggtatt gatatcactg ctaataacat agcaaatgtc aataccacgg gctttaaata
     1741 ctctgatgct caatttaaag atatttttta tactaccata acaacccaat caaccaaccc
     1801 tgctcaaggt ggttatggta gcggtgcagc atcttctcaa gttgttttcg aacagggttc
     1861 tcctgttgca agtgatggcg aatttgatgt ggctttgcaa ggaaaaggat tttttggggt
     1921 tttaggggct gatggcaatg cttactatac tagaaatgga tcatttagaa gagatgccaa
     1981 tggatatttg gtagattctt atggaaattt tgttttagga acaatgaatc ctgcttttac
     2041 tggtattaac tatagcgata gagttgctgg gcttatgggg gattatctta acacaggaac
     2101 tccggtaaat aatggtttta ctgtaaattc aaataattct ttcagtatag gcacaaccgc
     2161 ttctcaaggg gctattaaag tacctgtgaa tatgtattta cctcctcaag taactcaaaa
     2221 tgtaaaatgg agtggaagtt taaatactaa cacaacaaca gaagtagtta aagtagatct
     2281 tgatcctagt aaatttaaca ttacaaaaac tgaagatgga aaatatgtag ttagtggtag
     2341 tgttagcaaa gaagatgtgt ttagtgctaa agcgggtgat aggattattt taaatttcac
     2401 tgatgataat ggcgtaaaaa caagctttga agcgacttta gatgaaaatc taaattttaa
     2461 aagtaacgag cttgatttaa aaggattgga tgaaaatagc atcaagcttg atacagctca
     2521 aatttcaaca gagcaacaaa aagccaataa agatatttta gaatccccta tttataatgc
     2581 agatggaagt aaaagcactt taagggttac acttgaaaga gttttaccgc aagaaggcga
     2641 taatatacaa tataaagcta ttgcacaaat ttatgattct aatggcaatg ccgtaggcaa
     2701 tccgactgaa ggaaatatgg tttttgataa aaatggtgct ttgcttcaaa acaatattac
     2761 aagcattgca aatccaaatg gtggaacaat taatattgat ttaggttctc cttatgatgc
     2821 taacaagcct ggttcgggtt atagtgggat ttatattaaa caaggcgtcg aaaaaaatgt
     2881 agttacacaa caagatggtg tagctgaagg gttttttgaa caatataata tatccgatga
     2941 tggaagtatt gttgcgcaat ttagcaatgg taaaaatgcc atagttggaa agcttgcttt
     3001 atataatttt atcaatgagc aaggattagt tgctatggga gataatattt ttgcagcaac
     3061 ggcaaatagc ggtgatgcaa gttttattat gaaagatggt caagttgtta atacagctaa
     3121 atttaaaggc ggattcttag aacaatcaaa tgttgattta agcgcagagc tttcaaacct
     3181 tatcgtaact caaaaagcct ttgatgcaag ctcaaaaagt atcactacaa gtgatcagat
     3241 gatacaaaaa gccattaata tgaaaagata attcttagga attatctttt tctaattttt
     3301 caaaaataat tttaatttct tctatgtcgc tttcgctata attatggctt gatttaatat
     3361 aacttacttg ctgtcctttt tcaagatata aaaccttttc atagtctttt aaatttatat
     3421 gatgttttag ttcaaggttg gtgtttgtgt taggataaaa ttttaaaaaa ttatcctctc
     3481 cgatattttc ggcttttatg tatattttta cattgtaaac catttcattt aagaaattta
     3541 atttcgcatc aatttgatat tttaatttta taaat
//
LOCUS       DAZBIH010000128         3391 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.129, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000128 DAZBIH010000000
VERSION     DAZBIH010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3391)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3391)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3391
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.129"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            87..3311
                     /locus_tag="ACHFOB_001605"
     CDS             87..3311
                     /locus_tag="ACHFOB_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800381.1"
                     /translation="MLFQVRCLRGGGIRKSHLNSKKIVLSLATISFLASCANAKLNSE
                     IKTYDEANKNLKARSAASVYTPQARVNTTINTSETVQINISDSGPHTIIIEAGGTLGS
                     IGNNDRIIYAHANGSNTLTLTNLTNKGTINGNVNVEHDNDFKGTITVNTFENTGQVNG
                     QIYMGVWGGNSGTLNIDKFNNSGTIAVSNNNQGVFFEGKNTNIQAFNNNGFISGSEGV
                     SLSSGTINSFNNNGTINGNSSGIFVYGGNIQTLENSGTIISNGNYSNHAGIKLENGGF
                     IENIINTGTIKSNHSGIMVTWGKFGTLTIRDGGVIHGKYIGIGVGQWQTLGDLYIDGA
                     SSKKDGTVSGVYGDSYGISLDVHSRTQKIELKNGGVIKGNISGIRLDSGASLSGEMIL
                     SGEGSRVEGGRDAGIFNFGGKIEGSITVKDGATVTSSSGQAISNSGSGSITGGITVSG
                     ENTKLEGNIINADSASIGSDIKIEGGAKVEGGLVNQGNGSISGSVQVSGGSTIDSITN
                     EGNGAISGSITVDKDSKLDSITNTSTSDTGISGSITNNSDNKLEISNSGNIGGKIEST
                     GAADMVISNNGGGTISGGISSSGSGNTSISNSQGSTINNGITVSGSAQVEISNQGSVG
                     KDENGNTVTNNGSGSVGIKDWVVSTDKETGKLDTVVVGGSGKDNVKVENITVDQSNVN
                     LEELGNINNIISGVNQGNIGNIGTNGGGEISLSYDPLTGKLSTDYHLNASISGATFRS
                     LISTTSRRSTFIDNVMGNSMQTFALASSSKSQSIAMSEKGNLYADASDYIKSDLNNGS
                     YGSNKEHSLFILPYTSSQNVELSLNEESKGHTKGTIIGYSTLKDSGIYGVYAGYEDTK
                     MGSTYFDINNRTYYAGLKYFNTLFTTSKGQEVYIKAQGKAALIKNDLTKKIGNNEAKA
                     EPNSYAYGVNTALGMNFISNKDIFSPEVGLAYEGGYTEAFSMKDTIGQATVQGGERTY
                     ANYLNLFSTKTSFTWFRDWLPNLKTSVELGAKFNINPKVEAEARFGNIKVSDEFDLPR
                     VQKFVSTSFIVPVNEAFYFSLNYNGMFDKDGNTHTGFAQFNYLW"
BASE COUNT         1231 a          446 c          651 g         1063 t
ORIGIN      
        1 atattattat ttaaaaataa ataatatgga attaatttca aaataaacca ttttaaataa
       61 ggaaggagaa aaatatttga gtaaaaatat tatttcaagt aagatgttta cggggggggg
      121 ggattagaaa atcccattta aattctaaaa agatagtttt atctttagct actatttctt
      181 ttttggcaag ttgtgctaat gctaaattaa attctgaaat aaaaacttat gatgaagcaa
      241 ataaaaatct taaggctaga tcagcagcaa gtgtttatac tcctcaagct agagttaata
      301 cgactataaa cacctcagag acagtacaaa tcaacatttc tgattcaggt ccacatacca
      361 taataattga agcaggtgga actctaggta gtataggtaa taatgataga atcatctatg
      421 ctcatgctaa tgggagcaat acccttactc ttaccaatct tactaataaa ggaactatta
      481 atggcaatgt aaatgtagag catgataacg attttaaagg aaccatcact gtcaatacct
      541 ttgaaaatac aggtcaagtt aatggtcaaa tttatatggg agtttggggt ggtaattcag
      601 gaactcttaa cattgataaa tttaacaata gtggaactat agcagtttct aataacaatc
      661 aaggagtgtt tttcgaagga aaaaatacta atatacaagc ctttaacaat aatggattta
      721 ttagcggaag cgaaggtgta agcttatcta gcggaactat aaatagtttt aataataatg
      781 gaactatcaa tggtaactct tctggcatat ttgtatatgg tggcaatata caaactcttg
      841 aaaattcagg aactataata tctaatggta attatagtaa tcatgctggt ataaaactag
      901 aaaatggtgg cttcatagaa aacattatca acacaggaac tataaaatca aatcattctg
      961 gtataatggt aacttggggt aaatttggaa cacttaccat aagagatgga ggtgtaattc
     1021 atggcaaata cataggaata ggagtgggtc aatggcaaac tctaggggat ttatacatag
     1081 atggagcaag ctcaaaaaaa gatggcacag taagtggagt ttatggcgat agttatggaa
     1141 tttccttaga tgttcactca cgaactcaaa aaatagaact taaaaatggt ggtgttatta
     1201 aaggtaatat tagtggtata agattagata gtggagcttc tttaagtgga gaaatgattt
     1261 tatctggtga aggatctaga gtagaaggtg gacgtgatgc tggtatattt aattttggtg
     1321 gaaaaataga aggctctata accgtaaaag atggagctac tgtaacttct tcttcaggcc
     1381 aagccatatc taactctggc tcaggaagca taacaggtgg tattacagtt agtggggaaa
     1441 acactaaact tgaaggaaat ataatcaatg cagatagtgc ttctataggt agtgatatca
     1501 agatagaagg tggagctaag gtagaaggtg gtcttgttaa tcaaggcaat ggaagtatct
     1561 caggaagtgt tcaagtaagt ggtggtagca ccattgattc tattaccaat gagggtaatg
     1621 gagctatttc tggttcaatt actgtagata aagatagtaa acttgattct atcactaaca
     1681 cctctacttc tgatacaggt ataagtggtt ctatcactaa caatagtgat aataaacttg
     1741 aaatttctaa ctcaggtaat atcggtggta agattgaaag cactggtgct gctgatatgg
     1801 taattagcaa taatggtgga ggaactatta gcggaggtat tagttcttca ggaagtggaa
     1861 acactagtat ttctaattca caaggttcaa ccataaataa tggtatcact gtttcaggat
     1921 cagctcaagt tgaaatttcc aaccaaggct cagtaggtaa agatgaaaat ggtaatacag
     1981 taactaacaa tggtagtggt agtgttggaa tcaaagattg ggttgtttct acagacaaag
     2041 aaacaggtaa attagacact gtggttgtag gtggaagtgg taaagataat gtaaaagtag
     2101 aaaacatcac cgtagatcaa agcaatgtta atcttgaaga attaggcaat atcaataata
     2161 tcatctcagg tgttaatcaa ggcaatattg gtaatatagg aaccaatgga ggtggagaaa
     2221 tatctttaag ctatgatcca ttaacaggaa aactttctac agattatcat cttaatgctt
     2281 ccatatctgg agcaaccttt agatctttaa tctcaactac ttcaagaaga tctaccttta
     2341 tagataatgt tatgggtaat tctatgcaaa cttttgcttt agcttcttca agtaagtctc
     2401 aaagcattgc tatgtctgaa aagggtaatt tatatgcaga tgcaagtgat tatataaaga
     2461 gtgatttaaa taatggaagc tatggttcta ataaagaaca ttctttattc atccttcctt
     2521 atacttcttc acagaatgtt gaactttctt tgaatgaaga aagtaaagga cacactaaag
     2581 gaaccattat aggttattct actttaaaag acagtggaat atatggtgtg tatgcaggtt
     2641 atgaagatac aaaaatgggt tcaacttatt ttgatattaa taatagaacc tattatgcag
     2701 gtttaaaata ctttaatacc ttatttacta caagtaaagg tcaagaagtt tatatcaaag
     2761 ctcaaggtaa agctgctttg attaaaaatg atttaactaa aaaaatagga aataatgaag
     2821 ctaaagctga acctaattct tatgcttatg gagtcaatac agccttaggt atgaatttta
     2881 tttctaataa agatatattc tcccctgaag taggtcttgc ttatgaagga ggctatactg
     2941 aagctttttc tatgaaagac actataggac aagcaacagt tcaaggtgga gaaagaacct
     3001 atgcaaacta tttaaatctt ttctctacta aaacaagctt tacttggttt agagattggt
     3061 tgcctaattt aaaaacttca gtagaacttg gagctaagtt taatatcaat cctaaagtag
     3121 aagctgaggc tagatttgga aatataaaag taagtgatga gtttgattta ccaagagtac
     3181 aaaaatttgt aagcacttct tttatcgttc ctgttaatga agctttctat tttagtttaa
     3241 actataatgg aatgtttgat aaagatggca atacccatac aggatttgct cagtttaatt
     3301 atctttggta atcttataaa agatcctact tagtttaatt agtttttact ctcctacttg
     3361 ttaaaatttc atcctgatag ttttaaaatt a
//
LOCUS       DAZBIH010000129         3380 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.130, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000129 DAZBIH010000000
VERSION     DAZBIH010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3380)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3380)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3380
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.130"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..493
                     /locus_tag="ACHFOB_001606"
     CDS             <1..493
                     /locus_tag="ACHFOB_001606"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HFN5800382.1"
                     /translation="IFIPLHYEPNLIKFRHILNKNYKLFVPFMQDKSLKIVKLRLPFI
                     KKRFGVLEPIDSFFKAKIDLAIVPVIGVDKNLKRIGHGQGFYDRFFENLNYKPHIIFV
                     QSIDALSQNNLTQKHDISGKLYINPYKKYYKKERKNDRITYRTYSRYSRTRYRIFSCK
                     KNQ"
     gene            414..1967
                     /gene="rny"
                     /locus_tag="ACHFOB_001607"
     CDS             414..1967
                     /gene="rny"
                     /locus_tag="ACHFOB_001607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HFN5800383.1"
                     /translation="MIESLIALIAAIVGLGIGYLVAKKINDAKYEIFVEQAKAKAKAI
                     EYEAELILKDAKNSILNAELEVKKKYEEKTHKIQKDFNQKFDDLSKKEQKLQQEEEKL
                     KEDKEYLCKSQKHIQNLQSDVDKLKNKYQEKLDDVLKILEHSTGLTQNEAKEIILKKV
                     EENSREQIAHIVRKYEEEAKNEAKRKANFIIAQATSRFAGEFAAERLINVINIKNDEL
                     KGRIIGKEGRNVKTLEMVLGVDIIIDDTPGAIIVSCFNLYRRAIATKVIELLVEDGRI
                     QPARIEEIHEKVCKEFDSAILEEGETIVMDLGLNKIHPEIVKLIGKLKYRASYGQNAL
                     AHSLEVAHLAGIIAAECGGDENLARRAGILHDIGKALTHDFEGSHVDLGAELCKRYKE
                     HPVVINAIYAHHGHEEATSIESAAVCAADTLSAARPGARREVLEAFLKRVSELEDIAK
                     SKEGIKNAYAINAGREIRVIANAQLVNDDESVLLAKEIAAEIQEKMQYPGEIKVNVIR
                     ELRAVEYAK"
     gene            1976..2533
                     /locus_tag="ACHFOB_001608"
     CDS             1976..2533
                     /locus_tag="ACHFOB_001608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HFN5800384.1"
                     /translation="MQDMIDTLIKYGYIVLFFYSLGGGMVGILAAGVLSSQGKMDLSF
                     CITLAFIANTIGSTLLFILGKYYKKDIMPYFKKHRRKIALAMIKTKQHGIILLVTQKF
                     IYGLKTFIPIAAGMAKYNFIKFFIINTLASLAWAIVLGFTAYTFGYVIEAIFDKLSLY
                     PYAAPLFLLFLAGIIWLYLSKFSKK"
     gene            2533..>3380
                     /locus_tag="ACHFOB_001609"
     CDS             2533..>3380
                     /locus_tag="ACHFOB_001609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0030420 - establishment of competence for
                     transformation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ComEC/Rec2 family competence protein"
                     /protein_id="HFN5800385.1"
                     /translation="MSLWNSFSYSFKEFHYLFFSVVVIFIFNILLEYNNFLNFKNQKH
                     YLIDNALLTHQYIKYNKKNKKYWVLKLQTENFTFYTTSFKDLNLSKNQFLSLRIITHN
                     INFKDYLSKSFYAPSYDFEKLKEKEYNPIISYFLNQHTNEKIKEFYGALFFALPISLE
                     LRNDVNYYGIAHLIAISGYHIGLLFSLIFFILAPIYSFFQKRYFPYRNLRLDLSILIF
                     ALLLAYACLIGFVPSFVRSLIMAFWIFYLLCKNIKIINFVTLFCSILLCISLYPRLLF
                     SIGFLFS"
BASE COUNT         1246 a          464 c          525 g         1145 t
ORIGIN      
        1 aatttttatt cctttgcatt atgaaccaaa cttaataaaa tttcgccata ttctaaataa
       61 aaattacaaa ctttttgttc catttatgca agataaaagt ttaaaaattg taaaattaag
      121 attgcctttt attaaaaaaa ggtttggggt tttagagcct atagattctt tttttaaagc
      181 aaaaattgat ttagctattg tgcctgtaat tggcgtcgat aaaaatttaa aaagaatagg
      241 acatgggcaa ggtttttatg atagattttt tgaaaattta aattacaagc ctcatataat
      301 atttgtccaa agtatagatg ctttaagtca aaataatcta acacaaaagc atgatatttc
      361 aggaaaatta tacataaacc cttataaaaa atattacaag aaagaaagaa aaaatgatag
      421 aatcacttat cgcacttata gccgctatag tcggactcgg tataggatat ttagttgcaa
      481 aaaaaatcaa tgatgccaaa tatgaaattt tcgtagaaca agccaaagct aaagccaaag
      541 ctatagaata cgaagcggag cttattttaa aagatgcaaa aaattcaatt cttaatgcag
      601 aattagaagt taaaaaaaaa tacgaagaaa aaactcacaa aattcaaaaa gattttaatc
      661 aaaaatttga tgatctttct aaaaaagaac aaaaacttca gcaagaagaa gaaaaactaa
      721 aagaagataa agaatacctt tgcaagtcac aaaaacacat tcaaaactta caatctgatg
      781 ttgataaatt aaaaaataaa tatcaagaaa aacttgacga tgttttaaaa attttagaac
      841 attcgacagg acttacacaa aatgaagcca aagaaatcat tcttaaaaaa gtagaagaaa
      901 attctcgcga gcaaattgca catatagtaa gaaaatatga agaagaagca aaaaatgaag
      961 ctaaaagaaa agctaatttc atcattgctc aagctacttc tcgttttgca ggtgaatttg
     1021 cagctgaaag acttatcaat gttattaaca ttaaaaacga tgaacttaaa ggacgtatca
     1081 ttggtaaaga agggcgcaat gttaaaacct tggaaatggt tttaggtgtt gatattatca
     1141 tcgatgatac accaggtgct attatagtaa gttgttttaa tctttatcgc cgtgctattg
     1201 ctacaaaagt tatagaactt ttagttgaag atggcagaat tcaacccgcg cgcatagaag
     1261 aaattcacga aaaagtgtgt aaagaatttg atagtgccat tctagaagaa ggcgaaacca
     1321 tagttatgga tctaggttta aataaaatac accctgaaat tgtaaaactc ataggaaaac
     1381 tcaaataccg agcaagctat ggacaaaacg ctttagcaca ttctttggaa gtggctcacc
     1441 ttgcaggaat cattgctgct gagtgtggtg gagatgagaa tttagcacgt cgtgcgggaa
     1501 ttttacatga tataggaaaa gcattaaccc atgattttga aggatctcat gtggatttag
     1561 gtgcagaact ttgcaaacgc tacaaagagc atcctgtagt aatcaatgct atttacgcac
     1621 atcatggaca cgaagaagct acaagcatag aatcagcagc tgtttgtgca gcagatactt
     1681 taagtgctgc acgacctgga gctagaagag aagtgttaga agctttctta aaaagagtca
     1741 gtgagctaga agatatcgct aaaagtaaag aaggaattaa aaatgcctat gcaatcaatg
     1801 ccggaagaga aattcgcgtc atagccaatg ctcagcttgt taatgatgat gaaagtgtac
     1861 ttttagctaa ggaaatagca gctgaaattc aagaaaaaat gcaatatcct ggtgaaatta
     1921 aagtcaatgt tatacgtgaa cttagagctg tagaatacgc taaataaggt ttattatgca
     1981 agatatgatt gatactttaa taaaatatgg ttatattgtt ttattctttt actctttagg
     2041 gggcgggatg gttggaattt tagctgcagg agttttaagt tctcaaggaa aaatggatct
     2101 tagtttttgc attactcttg cttttattgc taataccata ggttcaactt tgctttttat
     2161 acttggaaaa tattataaaa aagacattat gccttatttt aaaaaacacc gacgcaagat
     2221 agcccttgct atgataaaaa caaaacaaca tggaattatt ttacttgtaa ctcaaaaatt
     2281 tatttatggt ttaaaaactt tcattcccat agctgcaggt atggcaaaat ataattttat
     2341 taaatttttt attatcaata ctctagctag tttggcatgg gctattgttc taggttttac
     2401 tgcttatact tttgggtatg ttattgaagc aatttttgat aaactgagtt tatatcctta
     2461 tgctgctcct ttatttttat tatttttagc cggaataatt tggctttatt taagtaaatt
     2521 ttctaaaaaa taatgtctct atggaattct ttttcttact cttttaaaga atttcattat
     2581 ttatttttct ctgttgttgt tatttttatt tttaatatcc ttttagaata taataatttt
     2641 ttaaacttta aaaaccaaaa acattacctt atagacaacg ctctattaac gcaccaatat
     2701 ataaaatata ataaaaaaaa taaaaaatac tgggttttaa agttacaaac tgaaaacttc
     2761 actttttata ctacaagttt taaggattta aatttaagca agaatcaatt tttaagcctt
     2821 agaattatca cccataatat taactttaaa gactatctga gtaaaagttt ttacgcacct
     2881 tcttatgatt ttgaaaaatt aaaagaaaaa gaatacaatc ccattatatc ttacttctta
     2941 aatcaacata caaatgaaaa gattaaagaa ttttatggtg ctttattttt tgcactgccc
     3001 atatctttag agcttagaaa cgatgtaaat tactacggta tagcacacct tatagcaatt
     3061 agcggttatc acataggctt actttttagt ttaattttct ttattttagc tccaatttat
     3121 agttttttcc aaaaaagata ttttccttat agaaatttac gtttagattt aagtatttta
     3181 atttttgcac tacttttagc ttatgcttgt ttaataggat ttgtcccttc ttttgtgcgc
     3241 tccttgatta tggctttttg gattttttat ctattgtgta aaaatataaa aatcattaat
     3301 ttcgttacgc ttttttgtag tattttattg tgcatttctc tttaccctag acttttattt
     3361 agtattggat ttttattttc
//
LOCUS       DAZBIH010000130         3154 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.131, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000130 DAZBIH010000000
VERSION     DAZBIH010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3154)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3154)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3154
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.131"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            31..363
                     /locus_tag="ACHFOB_001610"
     CDS             31..363
                     /locus_tag="ACHFOB_001610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HFN5800386.1"
                     /translation="MKKYHSLCPIETTLNLIGNKWKILIIRDLLQGTKRFGELRKSIS
                     FTKNQNISQNVLTQNLRELEEAKLIKRKVYAEVPPKVEYSLTSLGNSLESILKSLENW
                     GNSYKNIV"
     gene            448..1395
                     /gene="arsP"
                     /locus_tag="ACHFOB_001611"
                     /pseudo
     CDS             448..1395
                     /gene="arsP"
                     /locus_tag="ACHFOB_001611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_129557825.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="organoarsenical efflux permease ArsP"
     gene            1405..1727
                     /locus_tag="ACHFOB_001612"
                     /pseudo
     CDS             1405..1727
                     /locus_tag="ACHFOB_001612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002906233.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ArsR/SmtB family transcription factor"
     gene            complement(1735..2166)
                     /locus_tag="ACHFOB_001613"
     CDS             complement(1735..2166)
                     /locus_tag="ACHFOB_001613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HFN5800387.1"
                     /translation="MAYTIKKVEKETKISAHTLRFWAKKGLFPFVQKDENSVKYFSKS
                     DIEWVKWIEWLRISGMPIEQVKHYIKLCSLGIKTAKERQEMLKQTKKKLQNQIKTLKE
                     SEKVLSKKIKIYEEMLANEVDGFNPESKDYQPCDKLHKFKG"
     gene            2246..>3154
                     /locus_tag="ACHFOB_001614"
     CDS             2246..>3154
                     /locus_tag="ACHFOB_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HFN5800388.1"
                     /translation="MLKITKIKRKIMNSIKIKLSLIANLIAIFALIVLGIVSFYFTKT
                     SLYESTLKNQTDLLKVTQSTVEDFRSTNQSFTRALEKDIANLPYQSLITEENIINNVG
                     PILKYYRHSINALNVYLGLNNGKVLLSQKSNDAKMPELRDDLDIKTKDWYQEALKTND
                     IFVTPAYLDTVLKQYVITYSKAIYKDGKIIGVLGVDIPSEDLQNLVAKTPGNTFLFDQ
                     KNKIFAATNKELLNPSIDHSPVLNAYKLNGDNNFFSYKLNNEERLGACTKVFAYTACI
                     TESADIINKPIYKAAFIQAIVVIIVVV"
BASE COUNT         1107 a          424 c          409 g         1214 t
ORIGIN      
        1 tgttataatt ttaaaaaata aggatttata atgaaaaaat atcattctct ttgtcctatt
       61 gaaaccacgc ttaatttgat aggaaataaa tggaaaattt taattattcg agatttgttg
      121 caagggacta aaagatttgg agagttaaga aaaagcattt catttacaaa aaatcaaaac
      181 atctctcaaa atgtccttac acaaaattta cgagaattag aagaagcaaa actgatcaaa
      241 cgcaaagttt atgcagaagt tcctccaaag gttgagtact cacttacatc tttaggcaat
      301 agtttagaat ccatcttaaa aagtcttgag aattggggaa atagctataa aaatatcgtt
      361 taagtaataa attaatatat caatatatat taatttatta atttatacat gttatatttt
      421 ttggaaatat ttttaaaagg ataaaaaatg cagtcttttt taaatacttt caaagagttt
      481 ttatatctat ttactgagct ttctgtactt tttatagcta tttctttttt agtttctatt
      541 atcaatcaaa aatacgaagg aattttttaa aaacaacttg ctggtgacaa aatttcaagt
      601 tattttaaag ctatattttt aggtgcttta acgccatttt gttcctgttc taccataccg
      661 cttttaagag cttttttaga agcgaaagta aaacttagca tagctttagc ttatcttttt
      721 acttcgcctc ttattaatcc tattattttt tccatgcttt ttgtaacttt tggtttaaag
      781 ttaagtttga tttatgtggt ttttttgata tttttgatat ttattatttc ttttgttttt
      841 tctaaattta aggaagatag ttttttaaaa catattccta aaaatacaaa atcaagtatt
      901 tttacccaaa gcgctcacaa tcctagcaat tttattttta aacaaaaatc atgctgtgca
      961 aatactcaag ataagtctaa aaatataacg ataaactata aagaattatt caaagaaagt
     1021 ttgaaaaatt ataaaaaatt attaccttat atcgttgtgg cagtttttat cggtgctttt
     1081 attcatggtt ttattcctca agaaatttta caaaaatacc taaatggcaa tgaaatttta
     1141 agcattgcat tagcggcttt tttaggaatt ttcctttatt taagagtaga aactattatt
     1201 cctataggct tagcactttt acaaatggga atttctcaag gagtgattat gagtttttta
     1261 atcgctggtg ctggatgttc tttacctgag cttgttttac tcaaacaaat gtttaaaatg
     1321 aaatttttat ttttatttgt tatgattatt ttaggcgtgg ctatatcttt tggaattttt
     1381 attaatttaa tttaaggaaa taaaatgcaa aaatttttag ccattatttc ggcgatcaat
     1441 gatgaaagta gggttttgat tttacatcat cttttaagat acaaagaact ttgtgtttgt
     1501 gatctacaag agctcttaaa catgggtcaa tcaagacttt caagacattt aaaaatttta
     1561 aaagatgcgg gtttttgtat gtaaggcgtc aaggaacttg ggcgtattat gggattaata
     1621 atgagctttt aaagctgcat ttagatcttt ttgaaaatat caaaaattta gagcttaaaa
     1681 atgctattaa aaaaaatgaa aatattatta cccaaatttg cccttaatat aaaatcaacc
     1741 cttaaactta tgcaatttat cacaaggttg atagtccttg ctttctggat taaacccatc
     1801 gacttcattt gcaagcattt cttcataaat ttttatcttt ttgcttaaaa ctttttcact
     1861 ttcttttaat gttttaatct ggttttgtaa ttttttcttt gtttgcttta acatctcttg
     1921 tctctctttg gcagttttta tacccaaaga gcaaagtttt atataatgtt tgacttgttc
     1981 tattggcata cctgaaattc taagccattc tatccatttt acccattcta tatcgctttt
     2041 tgaaaaatat ttcacactat tttcatcttt ttgaacaaaa ggaaacaaac cttttttagc
     2101 ccaaaatctt aaagtatgag cactaatttt tgtttctttt tctacttttt ttatagtata
     2161 agccatattt tctcctttat ttaagataaa aataaaaatt tattttattt ttttgtgata
     2221 aaataatagc caaattatta gttttatgct aaaaataaca aagattaaaa ggaaaataat
     2281 gaatagtatt aaaatcaaac tttccctcat tgcaaattta attgcaattt ttgccttaat
     2341 tgttctaggt attgtaagtt tttattttac aaaaacctca ctatatgaaa gcactcttaa
     2401 aaatcaaact gacctactta aagtcacaca atctaccgtt gaagatttcc gttccacaaa
     2461 tcaatctttt actagagctt tagaaaaaga tatcgcgaac ttaccttatc aatctttaat
     2521 cactgaagaa aatattatta acaatgttgg tccaatattg aaatattatc gtcatagtat
     2581 aaatgcacta aatgtttatt taggtttaaa caatggaaaa gttttactta gtcaaaaatc
     2641 taatgatgca aaaatgcctg aattacgtga tgatttagat ataaagacaa aagattggta
     2701 tcaagaagct ttaaaaacaa atgatatttt tgttacacca gcatatttag atacagtttt
     2761 aaaacaatat gtaataacgt attctaaagc tatttataaa gatggtaaaa tcataggggt
     2821 actgggtgtc gatataccat cagaagattt gcaaaattta gttgcaaaaa cccctggaaa
     2881 tactttttta tttgatcaaa aaaataaaat atttgcagca accaataaag aattattaaa
     2941 tccatccatt gatcattctc ctgttctaaa tgcatataaa ctcaatggtg ataacaactt
     3001 cttctcttat aagttaaata atgaagaaag acttggagct tgtactaaag tctttgctta
     3061 tacagcttgt attaccgaaa gcgctgatat tataaataaa cctatttata aagctgcatt
     3121 tattcaagcc attgttgtca ttattgtagt agta
//
LOCUS       DAZBIH010000131         3096 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.132, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000131 DAZBIH010000000
VERSION     DAZBIH010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3096)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3096)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3096
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.132"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..2540)
                     /locus_tag="ACHFOB_001615"
     CDS             complement(<1..2540)
                     /locus_tag="ACHFOB_001615"
                     /EC_number="4.2.1.3"
                     /EC_number="4.2.1.99"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012109267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003994 - aconitate hydratase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aconitate hydratase
                     2/2-methylisocitrate dehydratase"
                     /protein_id="HFN5800389.1"
                     /translation="MSFMQEYNKLVEERAALGIPPLPLNANQTRELCKLLENENNEEL
                     ANLLENRVNPGVDDAALVKCEFLDSILKGKISAPNIDKKRALRMLGTMLGGYNVKVLI
                     DALKDENIAKDSAEVLKNIIFVHDNFHTIAELSKNNPHAKEVLQSWANADWFNKKEKL
                     PQVIKCIVFKVAGETNTDDLSPAGDAFTRSDIPLHANAMLKVRQAGSLEKIKELKKSG
                     REVVYVGDVVGTGSSRKSAINSIQWHLGKEIEGVPNKHSGGIVMGSTIAPIFFNTAQD
                     SGALPIICDVTNLEMGDEFEIHPYEGKIIKNGSTIAEFTLSPNALLDEVRAGGRIPLI
                     IGRGLCAKAREFLGMESENIFTKPEQPKSSSGGYTLAQKMLGRACGVEGVRPGMYIEP
                     MTLTVGSQDTTGPMTRDEIKELASLGFNADFVMQSFCHTAAYPKVSDSNLHKTLPNFM
                     TSRGGVSLKPGDGVIHSWLNRFVLPDTVGTGGDSHTRFPIGISFPAGSGLVAFAAVTG
                     SMPLNVPESVLVRFSGELQAGVTLRDLVNAIPYYAIKQGQLTVEKKNKKNIFAGKILE
                     IEGLPNLKVEQAFELSDASAERSAAACSVDLSIESVSEYIKSNISLIEAMIEAGYENK
                     ATLARRAEKMREWLKNPTLLRADKDAKYAYIIDINLNDIKEPILACPNDPDDVATLSE
                     ILADDKRPKNIDEVFVGSCMTNIGHYRALGEILKDKGILKTRLWVVPPTKMDKAQLTN
                     EGYYSIFGAAGARIEVPGCSLCMGNQARVNDGAVVFSTSTRNFDNRMGMGAKVYLGSA
                     ELAAVCAILGKIPSKEEYLQIVSEKLSDEHKANIYRYLNFNEIENFKL"
     gene            2595..3047
                     /locus_tag="ACHFOB_001616"
     CDS             2595..3047
                     /locus_tag="ACHFOB_001616"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HFN5800390.1"
                     /translation="MFKVYYKMPLCYLSLHSDGKFLTRVDFCDNKRSEKNCSLLDLAK
                     YELDLYFTHKLRKFSIPVLIQGADFESKVYKALMKIPYGKMVTYKDIAQKINHPKAFR
                     AVGNANSKNQIPIFIPCHRVIASNGIGGYNGGLEIKRFLLENEGVNLK"
BASE COUNT          923 a          595 c          480 g         1098 t
ORIGIN      
        1 tcaagtttga aattttcaat ctcattaaaa tttaaatatc tatagatatt tgccttatgc
       61 tcatcactta gtttttcgct gacaatttgt aagtattctt ccttgcttgg aattttaccc
      121 aaaatcgcac aaactgctgc aagttctgca ctgcctaaat atactttagc acccattccc
      181 atacggttgt caaaatttct tgtagaagtt gagaaaacta cagctccatc atttactcta
      241 gcttgattac ccatacacaa agaacaacca ggaacttcta ttctagcacc tgctgcgcca
      301 aagatgctgt aataaccttc attagtaagt tgcgctttat ccatttttgt tggaggtact
      361 acccaaagtc tggttttaag tatgccttta tcttttaaaa tttctcccaa agctctataa
      421 tgtcctatat ttgtcataca agaacctaca aaaacttcat ctatattttt tggacgctta
      481 tcatcggcta aaatttcact caaagtcgcc acatcatcag ggtcatttgg acaagctagg
      541 attggctctt taatgtcatt aagattaata tctataatat aagcgtattt tgcatcttta
      601 tctgctctta aaagagtagg gtttttaagc cattctctca ttttttcagc ccttctagca
      661 agggtggctt tattttcata tcctgcttct atcatagctt caattaaaga gatattggat
      721 ttgatatatt cgcttacact ttctatactt aaatccacac tgcaagcagc tgcagatctt
      781 tcagcacttg catcactaag ttcaaaagct tgttcgactt ttaagtttgg caagccttct
      841 atttctaaaa tttttcctgc aaaaatattt ttcttatttt tcttttcaac agtaagttgt
      901 ccttgtttga ttgcataata aggtatagca ttaaccaaat ctcttaaggt aactccagct
      961 tgcaattctc cgctaaaacg cactaaaaca ctttcgggta catttaaagg catagagcca
     1021 gtaaccgcag caaaagctac aagtccgctt cctgcaggga aagaaattcc tataggaaag
     1081 cgtgtgtgag aatccccacc cgttcctacg gtatctggca atacaaaacg attaagccaa
     1141 gagtgaataa ccccatcacc tggttttaaa ctcaccccac cacgacttgt catgaaattg
     1201 ggtaaagttt tatgtaaatt tgaatcgctt acttttggat aagcagctgt atggcaaaag
     1261 ctttgcataa caaagtctgc gttaaaacct aagcttgcaa gctctttaat ttcatctcta
     1321 gtcataggac ctgtagtatc ttgagagcct acagttaaag tcataggttc tatatacata
     1381 cctggacgca caccttcaac tccacaggca cgacctagca ttttttgagc caaggtataa
     1441 ccaccgcttg aagatttagg ttgttcaggc ttggtaaaga tgttttcact ttccattcct
     1501 aaaaattctc tagctttagc acaaagccca cgacctatga taagtgggat tcttcctcct
     1561 gctctaactt catctaagag agcgtttgga ctgagtgtaa attctgcaat tgtagagcca
     1621 ttttttatga tttttccctc ataaggatga atttcaaact catcgcccat ttctaagttt
     1681 gttacatcac agatgatagg taaagcccca ctatcttgag cagtgttaaa gaaaatcggt
     1741 gctatggttg aacccattac tataccaccg ctgtgcttgt ttggtacccc ttctatttct
     1801 tttcctaagt gccattgtat agaatttatt gctgattttc tactcgaacc tgttcctaca
     1861 acatcaccta cataaaccac ttcgcgaccg ctttttttaa gctctttgat tttttctaag
     1921 gatcctgctt gtcttacctt tagcatggca tttgcatgca aaggaatatc gcttcttgta
     1981 aaagcatctc ctgcagggct tagatcatcg gtatttgttt cccctgctac tttaaaaact
     2041 atacatttaa tcacttgagg taatttttct tttttgttaa accagtccgc atttgcccag
     2101 ctttgtaaaa cttctttagc gtgtggattg tttttgctaa gttcagctat ggtatgaaaa
     2161 ttatcatgaa caaaaataat atttttcaac acttctgcag aatctttggc tatgttttca
     2221 tcttttaagg catcgattaa aactttaaca ttatatccgc ctagcatagt tccaagcatt
     2281 cttaaggctc tttttttgtc tatatttgga gcactgattt tgcctttaag tatggaatct
     2341 aaaaattcac attttactaa agctgcatca tcaacaccag gatttactct attttctaaa
     2401 agatttgcaa gctcttcatt attttcattt tcaagtaatt tacaaagttc tctagtttga
     2461 tttgcattta aaggaagggg tggtataccc aaagcggctc tttcttcaac aagtttattg
     2521 tattcttgca taaaagacat tttctactcc ttaaatattt tttattataa ttgtagctct
     2581 ttgaaggata aaaaatgttt aaagtttatt ataaaatgcc tttatgttac ctatctttac
     2641 atagtgatgg aaaattttta actagagttg atttttgtga taataaaaga tcagaaaaaa
     2701 attgtagttt gcttgactta gcaaaatatg aacttgattt atattttact cataagctta
     2761 gaaaatttag cattcctgtt ttgatacaag gtgcagattt tgaatcaaag gtttataagg
     2821 ctttaatgaa aattccttat ggtaaaatgg ttacctataa agatatagcc caaaaaatca
     2881 atcatcctaa agcttttaga gctgtcggaa atgcaaattc taaaaatcaa attcctattt
     2941 ttataccttg tcatagagtt attgcaagca atggcatagg aggatataat ggagggcttg
     3001 aaataaaaag atttttgctt gaaaatgaag gagtgaattt aaaataagct tggggtttga
     3061 ttttctttgt tttcaaattc ttgttcaaaa atatca
//
LOCUS       DAZBIH010000132         3032 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.133, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000132 DAZBIH010000000
VERSION     DAZBIH010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3032)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3032)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3032
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.133"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            53..637
                     /locus_tag="ACHFOB_001617"
     CDS             53..637
                     /locus_tag="ACHFOB_001617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HFN5800391.1"
                     /translation="MQTINQIFQTQIDIKKSIFLSFLCPFKDFKFLIETLKKEHPKAV
                     HFVYAYRVLNDFNQIVEDKSDDGEPKGTSGMPTLNVLRGYDLINAALITVRYFGGIKL
                     GTGGLARAYSDAANAVINNSSLLSFELKKNISIAIDLKNLNRFEYFLKTYSFNFTKDF
                     KDCKAILHIKLNEKEEQEFEIFCKNFAPFEIEKL"
     gene            complement(681..1064)
                     /locus_tag="ACHFOB_001618"
     CDS             complement(681..1064)
                     /locus_tag="ACHFOB_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800392.1"
                     /translation="MQVNYRTISSYEYDAISGQYKQVDKQVEDYSSSGKSDFMDILNK
                     ADEKSSGDALNSSNSFQSNAQNSNSNLSNYAQMSNVYAYRFRQNEGELSMRAQSASVH
                     NDLVQQGANEQSKNNTLLNDLLNAI"
     gene            complement(1140..1475)
                     /locus_tag="ACHFOB_001619"
     CDS             complement(1140..1475)
                     /locus_tag="ACHFOB_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800393.1"
                     /translation="MMAKFRIQYSAGFGHYTQNHKGFGPTIYIEEVVEFDNGKDYFDY
                     IDFYKTYSKSDDTYFHISFLEDRPLSDKEITIRNEYRKMRDENCKKAKEEFIANNELD
                     VEHLPTHHD"
     gene            complement(1465..>3032)
                     /locus_tag="ACHFOB_001620"
     CDS             complement(1465..>3032)
                     /locus_tag="ACHFOB_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HFN5800394.1"
                     /translation="KNLTMRFANQLLFENVNLKLVRGQRYGLIGANGAGKSTFLKILS
                     GEIESSSGEIVFDEGLKIAVLGQDQFAFENYTIKDAVMCANKRLYEALKEKEKLYMSE
                     EFTDEINERLGELEIITAEEDPNYDCETRCEKILSSLKIKDFDALMSTLQSADKFKVL
                     LAQVLFLGADVLFLDEPTNNLDLEAISWLENELLRHEGTLVVISHDRHFLNKICTRIL
                     DVDFKQIRDFAGNYDDWYMASTLLAKQAELKRDKTLKEREELENFIRRFSANASKAKQ
                     ATSRAKALEKLELEEIKISSRRDPSIVFRTNREIGNEVLEFKGIGKAYDKQLFSNLEL
                     KIEKNDKIALIGANGVGKSTLAKIIAHAISPDTGSMHLGATIELGYFPQDTSNLICEN
                     LKLYEWLMSEKFKDLDEIRKCLGRMLFSGSDQEKMAASLSGGEKHRLMLSRLMLERPN
                     FLLLDEPDNHLDLESIIALGEALYNFKGVVLCISHDRELVSAFANRIWHLENGKLTDF
                     RGTYQEFLGENDG"
BASE COUNT         1011 a          577 c          384 g         1060 t
ORIGIN      
        1 atcaaattga ttttagtttt tataagtata attttaaaca aaaaaggcaa aaatgcaaac
       61 tattaatcaa atttttcaaa cacaaatcga tattaaaaaa tctattttct tatcttttct
      121 ttgccctttt aaagatttta aatttttaat agaaacgcta aaaaaagagc atccaaaagc
      181 tgttcatttt gtctatgctt atcgtgtttt aaatgatttt aatcaaattg tagaagataa
      241 aagcgatgat ggagagccta aaggaacttc tggaatgcca actttaaatg ttctaagggg
      301 ctatgatctt atcaatgcgg ctttaatcac tgtaagatat tttggcggta taaaacttgg
      361 tacaggggga cttgcaagag cttatagcga tgcagcaaat gccgtgatta ataattcttc
      421 tttactttca ttcgaattga aaaaaaatat atccattgct attgatttaa aaaatttaaa
      481 tcgttttgaa tattttttaa aaacttattc ttttaatttc acaaaagatt ttaaggattg
      541 caaagctata ttacatatca aattaaatga aaaagaggag caagaatttg aaattttttg
      601 taaaaatttt gcaccttttg aaatagagaa attataaatt cttgcaagta aatacaaaag
      661 ctccaaaatg gagcttttga ttaaattgcg ttcaataaat catttaacaa agtattattc
      721 ttactttgtt catttgcacc ttgttgcaca agatcattgt gaacgctagc actttgagct
      781 ctcatagaca actcaccttc attttgtcta aaacgataag cgtaaacatt tgacatttga
      841 gcataattac ttaaatttga atttgagttt tgcgcattgc tttgaaaact attgctagaa
      901 tttaaagcat ctccgcttga cttctcatcc gccttattta atatatccat aaaatcagat
      961 tttccagatg aagaataatc ttcaacctgt ttatccacct gtttatactg accactaata
     1021 gcatcatatt catacgagct gatcgttcta taatttacct gcatagtttt ctcctttcaa
     1081 aatatgcaaa aactatacaa gcaaaaagtg ttcctttttt atgcaaaaat taatgttttt
     1141 caatcatgat gagtaggcaa atgctccaca tcaagctcat tattagctat aaattcttcc
     1201 ttggcttttt tacagttttc atcacgcatt ttgcggtatt cattgcgaat cgtgatttct
     1261 ttatcgctta aaggtctatc ttctaaaaaa ctaatatgaa aataagtatc atcgctcttt
     1321 gaataagttt tataaaaatc tatataatca aaataatcct tgccattatc aaactctacg
     1381 acctcttcta tataaatcgt aggtccaaaa cccttgtgat tttgcgtata gtgcccaaaa
     1441 cctgcgctgt attgaattct aaatttagcc atcattttct cctaaaaatt cttgataagt
     1501 tccacgaaaa tccgtaagct taccattttc taaatgccaa attctattag caaaagcaga
     1561 aactaactcc ctatcgtggc tgatacaaag cactacacct ttgaaattat acaaagcttc
     1621 acccaatgca ataatacttt caagatctaa atggttatca ggttcgtcta aaagcaagaa
     1681 attcggacgc tctagcatta aacgagaaag cattaaacga tgtttttcac ccccacttaa
     1741 acttgctgcc attttttctt gatcgctgcc actaaaaagc attctaccta aacacttgcg
     1801 gatttcatct agatctttaa atttttcact cataagccat tcataaagtt tcaaattttc
     1861 acaaattaaa ttacttgtat cttgaggaaa atatccaagc tctatagttg ccccaaggtg
     1921 catagatcca gtatctggac ttatagcatg agcgatgatt tttgccaaag tacttttacc
     1981 cacaccattt gccccaatca aagcgatttt atcatttttt tctattttta actccaagtt
     2041 tgaaaatagt tgtttatcat aagccttgcc tataccttta aattctaaaa cttcattacc
     2101 tatttcacga ttggttctaa acactatact aggatctcta cgacttgaaa ttttaatctc
     2161 ttcaagctct agtttttcaa gtgccttagc acggctcgta gcttgttttg ccttagaagc
     2221 attcgcacta aaacggcgaa tgaaattttc taattcttct ctttctttta aggttttatc
     2281 acgtttaagc tcagcttgtt ttgccaaaag cgttgaagcc atataccaat catcgtaatt
     2341 tcccgcaaaa tcacgaattt gtttaaaatc cacatccaaa atccttgtgc aaattttatt
     2401 taaaaaatgt ctatcatgag agataacaac caaagttcct tcatgtctta aaagctcatt
     2461 ttcaagccaa gaaatcgcct ctaaatcaag gttatttgta ggctcatcta aaaaaagcac
     2521 atccgcaccc aaaaataaaa cttgagctag taagacttta aatttatccg cactttgcaa
     2581 ggtgctcatc aaagcatcaa aatctttaat ctttaaagaa cttaaaattt tttcacaacg
     2641 cgtttcacaa tcataatttg gatcttcttc agccgttatt atctcaagct cacctaaacg
     2701 ctcattgatc tcatctgtaa attcctcgct catataaagc ttttcttttt cttttaaagc
     2761 ctcatataaa cgcttatttg cacacatcac cgcatctttg atggtgtagt tttcaaaagc
     2821 aaattgatcc tgtcctaaaa ctgcgatttt taaaccttca tcaaatacta tttcaccact
     2881 acttgactca atttctcctg aaagaatttt taaaaaagtc gattttcctg caccattagc
     2941 accaataagt ccgtatcttt gtcctctaac aagctttaaa ttaacatttt caaataaaag
     3001 ctgatttgca aaacgcatag taagattttt ta
//
LOCUS       DAZBIH010000133         3009 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.134, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000133 DAZBIH010000000
VERSION     DAZBIH010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.134"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..812)
                     /locus_tag="ACHFOB_001621"
     CDS             complement(<1..812)
                     /locus_tag="ACHFOB_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002880441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HFN5800395.1"
                     /translation="MKFYEVEFLKNNQNYTKTIKAENLNTAQAKALSKNWKIIDIKEI
                     QKSNFQRLKDENFILFFKELALLCEVGLSVQEAIRELYFMHSCKIMKKILDNLILAQN
                     LNQAFENANFGLNRAELALIKTAEKTGKISEVFSQISKLREKSLESQKQLKKAFRYPT
                     LVFLSIIGAFLFLMLFVVPNFKDLFENLGVSLPFITHVMLEIYNFLDDYGIFCIFLFV
                     IFIVMLILAYKNFHSFAFSCDFLFLKVPLISRLIIYNQNYYFFMVFSLLLKNG"
     gene            complement(809..2368)
                     /locus_tag="ACHFOB_001622"
     CDS             complement(809..2368)
                     /locus_tag="ACHFOB_001622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GspE/PulE family protein"
                     /protein_id="HFN5800396.1"
                     /translation="MESRMDKIFQAYIDNEISLDEICTKFNITSWDFFKKLANFCNLH
                     FVDLDEDNDFIYEGIPFSLLLKFKFLLIKNNDGFMIIRSKPCSLELLEQVKTFMICEK
                     IDTAIADELKIAKILNQIRIQEEIKRLSIKLRLEWQENHKRDDQSCISQIFDFLLHEI
                     LSFHASDIHIEARNDDALIRFRVDGILREFAIFEKDIYEALVFHVKFLACLNLAESRK
                     TQDGSFELDFENERYDFRVSCLPLIYGESVVIRILKHDKEILDLYKLNLGNKNLEILK
                     KILHRPNGMILLTGPTGSGKSTTLYACLNELKSIEKKIISAEDPIEYKIPLVQQILLN
                     SKVGVEFNSVLRAILRQDPDIIMIGEIRDEESLDIALKASLTGHLLLSTLHTNDALST
                     IDRLLDMQAKSYLIASALSLVIAQRLVRKLCPWCKQKSKKHYIEFEGEFFEPKGCERC
                     HHSGFFGRELIAECLEINEDLACAIRENQDKTILMELAKKYGFQTMFEQGLKKAKEGL
                     TSIDELLRVVR"
     gene            complement(2358..2945)
                     /locus_tag="ACHFOB_001623"
     CDS             complement(2358..2945)
                     /locus_tag="ACHFOB_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transformation system protein"
                     /protein_id="HFN5800397.1"
                     /translation="MQERIKELELRYKYFLLKKYLKYLLLIILISVIAFCFFVLMQKY
                     NKQKNIYLQAIEHKKHLEQKILQAQILQEKNKISREKLYKELEEVKAVQENTHISKIE
                     IDSKILNISDLKKSFYQNPSYEKALNLAKKYFDIKAYQKTIFWALKANELDKQKQDSW
                     LIFAQAKRALGEEKEAQSALDAYINYYGLMELDGK"
BASE COUNT         1087 a          510 c          307 g         1105 t
ORIGIN      
        1 ccatttttta aaagcaaaga aaaaaccata aaaaaataat aattttgatt ataaataatc
       61 aaacgagaaa tcaaaggtac ttttaaaaat aaaaaatcac aagaaaaagc aaaagaatga
      121 aaatttttat aagctaaaat aagcataaca ataaaaataa caaacaaaaa tatgcaaaaa
      181 attccatagt catctaaaaa attataaatt tctaacatta catgcgtgat aaaaggcaaa
      241 ctcacgccta aattttcaaa taaatcttta aaattaggca ctacaaaaag cattaaaaac
      301 aaaaatgctc cgataatact taaaaaaacc aaagtaggat atctaaaagc cttttttaat
      361 tgtttttgac tctctaagct tttttctcga agtttagaaa tttgactaaa cacttcactg
      421 atttttcctg tcttttcagc cgttttaatc aaagctaact ccgcacgatt taatccaaaa
      481 ttagcatttt caaaagcttg atttagattt tgggctaaaa ttaaattgtc taatattttt
      541 ttcataatct tgcaagaatg cataaaatat aattctctaa tcgcttcttg aacacttaat
      601 ccaacttcac acaacaaagc tagctcttta aaaaagagta taaaattttc atcctttaat
      661 ctctgaaaat tagatttttg aatttctttt atatcaatga ttttccaatt ctttgataag
      721 gcttttgctt gtgctgtatt taaattttca gcttttatag tttttgtata attttgattg
      781 tttttaagaa attctacttc ataaaatttc atcttacaac ccttaaaagc tcatctatac
      841 ttgtaagacc ttctttggct ttttttaaac cttgttcaaa catagtttga aagccatatt
      901 tttttgcaag ctccattaaa atcgttttat cttgattttc cctaattgca caagctaaat
      961 cttcattgat ctctaagcac tcagcgatta attctctgcc aaaaaatcca ctatgatgac
     1021 aacgctcaca tccttttggt tcaaaaaatt caccttcaaa ttcaatataa tgttttttgc
     1081 ttttttgctt acaccaagga caaagttttc taaccaaacg ctgtgctata acaagactca
     1141 aagccgatgc tatcaagtaa ctttttgctt gcatatccaa aagcctatca atggtactaa
     1201 gagcatcatt agtatgcaag gtgcttaaaa gcaaatgacc tgttaaagaa gctttaagtg
     1261 caatatctaa actttcttca tcgcgaattt ctcctatcat gataatatca ggatcttgcc
     1321 ttaaaattgc tcttaaaaca ctattaaact cgactccaac ttttgaattg agcaaaattt
     1381 gctgcactaa aggaatttta tattctatag gatcttctgc ggaaataatc tttttttcaa
     1441 tacttttcaa ctcatttaaa cacgcgtata aagttgtgct tttaccacta cctgtaggac
     1501 cggttaataa aatcattcca ttgggacgat gtaaaatctt ttttaaaatt tctaaatttt
     1561 tatttccaag atttagttta tacaaatcca aaatttcttt atcatgtttt aaaattctta
     1621 taacaacact ttcgccataa atcaaaggca aacatgaaac acgaaaatca tatctttcat
     1681 tttcaaaatc taattcaaaa cttccatctt gtgtttttct tgattcagct aaattcaaac
     1741 aagctaaaaa tttgacatga aaaaccaaag cttcataaat atccttctca aaaatagcaa
     1801 attcacgcaa aattccatca accctaaacc taatcaaagc atcatcattc cttgcttcta
     1861 tatgaatatc actcgcatga aaagataaaa tttcatgtaa taaaaaatca aaaatttgac
     1921 tgatgcaact ttgatcatct cttttgtgat tttcttgcca ttcaagtcta agcttaatgc
     1981 ttaatctttt aatctcctct tgaatgcgaa tttgatttaa aattttagct atctttaatt
     2041 catcggcaat tgcagtgtcg attttttcac aaatcataaa agtcttaact tgctctaaaa
     2101 gctctaaaga acaaggtttg gatctaataa tcataaagcc gtcattgttt ttaataagca
     2161 gaaatttaaa ttttaaaagt aaagaaaaag gtataccttc ataaataaaa tcattatctt
     2221 catctaaatc aacaaaatgc aaattacaaa aatttgctaa ttttttaaaa aaatcccaag
     2281 aagtgatatt aaatttagtg caaatttcat caagacttat ttcattatca atataagctt
     2341 gaaaaatttt atccattcta ctttccatct aattccatta aaccataata atttatataa
     2401 gcatctaaag cactttgagc ttctttttct tcgcctaaag ctcttttagc ctgagcaaaa
     2461 atcagccaag aatcttgttt ttgcttgtca agttcattgg cttttaaagc ccaaaatatt
     2521 gtcttttgat aagctttaat atcaaaatac ttcttagcta aatttaatgc cttttcatag
     2581 cttggatttt gataaaaaga tttttttaaa tcagaaatat ttaaaatttt agaatcaatt
     2641 tctatcttgc taatatgtgt attttcctgc accgctttaa cttcttctag ttctttatat
     2701 aacttttccc tagaaatctt atttttttct tgtaaaattt gcgcttgaag aatcttttgc
     2761 tccaaatgct ttttatgttc aatagcttgt aaataaatat ttttttgctt attatatttt
     2821 tgcattagca caaaaaaaca aaatgctatt actgatatta gaataattaa taataaatat
     2881 tttaaatatt ttttaagtaa aaagtattta tacctaagct caagctcttt aattctttct
     2941 tgcatatctt accttaataa gccattctct aaagcactaa gctttaaaat atactcttga
     3001 cttttgttt
//
LOCUS       DAZBIH010000134         2957 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.135, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000134 DAZBIH010000000
VERSION     DAZBIH010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2957
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.135"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            130..1998
                     /gene="rpoD"
                     /locus_tag="ACHFOB_001624"
     CDS             130..1998
                     /gene="rpoD"
                     /locus_tag="ACHFOB_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_function: GO:0016987 - sigma factor activity [Evidence
                     IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HFN5800398.1"
                     /translation="MNAKTQEAELEELFQENAKDYITYEKLVKYLTKQPSASTAKKVQ
                     ALMKKHKVQLFSAAEIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS
                     DSPVRMYLREMGQIALLNKDEEIEISKKIELGEDIIIDAFCSVPYLIDFILDYKEPLI
                     NRERRVKELFKSFDDEEKSDDKLDELDIDEDEENETELESDEENTKKNSKKEDERTLK
                     VIEKFKALEKAKKDWLKTSKDKESGDELLDKLSIAFKKNILKEKLMDLGPTSKLISEI
                     VKSMETALKSDEEFDKELKRLEYRLPMFSDELKKRHADILKDITKLSKEEITERALET
                     TMVSTYMEIKKLFQTKEASEKSFDLEKSRLKEILEQIKRGKKISDEAKGRMAKSNLRL
                     VVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAISRAIA
                     DQARTIRIPIHMIETINQINKIIREHLQKDGKEPDVSVIAKEVGLSVDKVKQVIKITK
                     EPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQIDEVLDQLNDREKAVIR
                     MRFGLMDDESDRTLEEIGKELNVTRERVRQIESSAIKKLKHPKVGRKLKNYIEGWK"
     gene            complement(2013..2525)
                     /locus_tag="ACHFOB_001625"
     CDS             complement(2013..2525)
                     /locus_tag="ACHFOB_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HFN5800399.1"
                     /translation="MKKIYIIRHAKASKSGDIDDFERKLTKSGKEDLKKLFKNLALHE
                     IHPDLVLSSPAVRTAKTAKKIAKFYNFDKNKICFDERLYLCNVENLLKILQDIDDEFN
                     EVFLVGHNPGLMELGELLSSLCLASFPTSSILCLEFDIKEFKNLKKHSGKLVFFEHVR
                     KLKEEKDLGF"
     gene            complement(2522..2956)
                     /locus_tag="ACHFOB_001626"
     CDS             complement(2522..2956)
                     /locus_tag="ACHFOB_001626"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002864128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HFN5800400.1"
                     /translation="MLFFNGAYWQLLSSMFLHGNLTHLILNMIVLFQFGRILETYLGA
                     LRFIFIYFIGGLLCSLLSVFYVYFDFKYFGENINVIGASGAICVLMGFYAVLDKNSTK
                     GLIVAILLMSFAPLLMGVNVAWYGHIFGFMCGYILAKIKEVK"
BASE COUNT         1269 a          440 c          429 g          819 t
ORIGIN      
        1 ataattttaa cagagcttta gaaaaatttg aaaaaatatt caaatcataa acataataac
       61 cgatttatat agaaagttaa gcaattttta gataaaatcc aaagcttata taaatttcaa
      121 ggataatcaa tgaacgccaa aactcaagaa gctgaattag aagaattatt tcaagaaaat
      181 gcaaaagatt atattacata tgaaaaattg gtaaaatatc ttacaaaaca accaagtgca
      241 tcaaccgcta aaaaagtaca agcattaatg aaaaaacaca aagtgcaact tttttcagca
      301 gccgaaattg cacaaatgaa aaacatagaa gatgcaaaaa gacttcaaga agaaaaacaa
      361 aaactccaag atacaagcct tgagaacgaa tttgatttag ccaatgaaaa cgatttatta
      421 gaatggagca gatcagactc tcctgttcgt atgtatttaa gagaaatggg acaaattgct
      481 ttattaaaca aagatgaaga aattgaaatt tccaaaaaaa tagaacttgg cgaagatatt
      541 atcattgatg ctttttgttc tgtaccttat ttgatagatt ttattttaga ttataaagaa
      601 cctttaataa acagagaaag aagagtaaaa gaactattta aaagctttga cgatgaagaa
      661 aaaagtgatg ataaacttga tgaacttgat atagatgaag atgaagaaaa cgaaacagaa
      721 ttagaatcag atgaagaaaa tactaaaaaa aacagcaaaa aagaagatga aagaacttta
      781 aaagttatag aaaaatttaa agctctagaa aaagctaaaa aagattggct aaaaacatcc
      841 aaagacaaag aaagcggaga tgaactttta gataaattaa gcattgcgtt caaaaaaaat
      901 attttaaaag aaaaattaat ggatctaggc cctacttcaa aacttattag tgaaatcgta
      961 aaatcaatgg aaactgcact aaaaagcgat gaagaatttg acaaagaact taagcgttta
     1021 gaataccgct tacctatgtt ttctgatgaa cttaaaaaac gccatgcaga tattttaaaa
     1081 gatattacaa aattgagcaa agaagaaatc acagagcggg ctttagaaac aaccatggta
     1141 agcacttata tggaaattaa aaaactattt caaaccaaag aagctagtga aaaaagcttt
     1201 gatcttgaaa aatcacgttt aaaggaaatt ttagagcaaa ttaaacgcgg taaaaaaatc
     1261 tctgatgaag caaaaggaag aatggcaaaa tcaaacttgc gtcttgttgt aagcatagct
     1321 aaacgctaca caaatcgtgg tctacctttc ttagatctta tccaagaagg aaatataggt
     1381 ttaatgaaag ctgtggataa gtttgaatac aaaaggggtt ataaattttc cacttatgca
     1441 acttggtgga tcagacaagc tatttcaagg gctatagccg atcaagcaag aaccataaga
     1501 attccaatcc acatgataga aaccatcaat caaattaaca aaattatccg cgaacatcta
     1561 caaaaagatg gaaaagaacc tgatgtcagt gttatagcta aagaagtagg tttaagcgta
     1621 gataaggtta aacaagtcat taaaatcaca aaagaaccaa tttcccttga agctccaata
     1681 ggaaatgaag atgatggtaa atttggagat tttgttgaag atagaaattc actttctcca
     1741 atggatcata tcttaaagga tgatttaaaa gaacaaattg atgaagtttt agatcaatta
     1801 aacgatagag aaaaagcggt aattcgtatg cgttttggtt taatggatga tgaaagtgat
     1861 agaactttag aggaaattgg aaaagagctt aatgtcactc gagaaagagt gagacaaata
     1921 gaaagctcag ctataaaaaa actcaaacac cctaaagtag gaagaaaact aaaaaattat
     1981 atagaaggtt ggaagtaaga gtcaatctct tactaaaaac ccaaatcttt ttcttctttt
     2041 aacttgcgta catgttcaaa aaaaactaat tttccgctat gtttttttaa atttttaaat
     2101 tccttaatat caaattctaa acacaagata gaagaagttg gaaaagaagc taaacatagc
     2161 gagcttaata actctccaag ctccattaaa ccaggattat gacccactaa aaatacttcg
     2221 ttaaactcat catcaatatc ttgcagaatt tttagcaaat tttcaacatt acaaagatac
     2281 aatctttcat caaaacaaat tttattttta tcaaaattat aaaatttggc tatttttttc
     2341 gctgttttag cggttctaac agcaggactt gatagcacca aatcaggatg aatttcatgc
     2401 aaggcaagat ttttaaaaag tttttttaaa tcttcctttc cactcttagt aagttttctt
     2461 tcaaaatcat caatatcccc actcttactt gcttttgcat gtcttataat ataaattttt
     2521 ttcattttac ctcttttatt ttagctaaaa tataaccaca cataaacccg aaaatatgac
     2581 cataccaagc aacatttacc cccataagca atggcgcaaa actcataagt aaaattgcca
     2641 ctataagtcc ttttgtgcta tttttatcaa gaacagcata aaagcccatt aaaacacaaa
     2701 ttgcaccact agcgcctatg acatttatat tttctccgaa atatttaaaa tcaaaataca
     2761 cataaaaaac acttaaaagt gaacacaaca atccgccaat aaaataaata aaaataaaac
     2821 gcaaagcacc taaataagtt tctaatatac gcccaaattg aaacaaaact atcatattta
     2881 atataagatg agttaaattt ccatgtaaaa acattgaact taaaagttgc caataagctc
     2941 cattaaaaaa taaaata
//
LOCUS       DAZBIH010000135         2872 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.136, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000135 DAZBIH010000000
VERSION     DAZBIH010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2872)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2872)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2872
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.136"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..787)
                     /locus_tag="ACHFOB_001627"
     CDS             complement(<1..787)
                     /locus_tag="ACHFOB_001627"
                     /EC_number="3.6.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0050380 - undecaprenyl-diphosphatase
                     activity [Evidence IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl-diphosphate phosphatase"
                     /protein_id="HFN5800401.1"
                     /translation="MENLYALILGIIEGLTEFLPISSTGHMILGTTILGIDIDEFWKS
                     FLIIIQLGSILAVIFVFWRKLFQGLDIWLKLAVGFFPTGVIGLFVAKYLNALFNGWVV
                     VGMLIFGGVVFILIELAHKNKQYRINSLEEISFKQAFCIGIFQSLAMIPGTSRSGASI
                     IGGLLLGFNRKVAAEFSFLLAIPTMIIATAYSIYKEPELLSNANSLIPLGIGFITAFI
                     VAVLVIKFFLKFISKFDFIPFGIYRIILGFVFFYLYYSGILNAG"
     gene            complement(861..2858)
                     /locus_tag="ACHFOB_001628"
     CDS             complement(861..2858)
                     /locus_tag="ACHFOB_001628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0035673 - oligopeptide transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006857 - oligopeptide transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="OPT family oligopeptide transporter"
                     /protein_id="HFN5800402.1"
                     /translation="MMYKKQNLPELTLRGLILGSILTIIFTASNVYLGLKVGLTFSSS
                     IPAVVISMAVLSLFKTSNILENNMVQTQASAAGTLSSVIFVIPGLFMCGYWSEFPLWQ
                     TFMICLCGGGLGVLFTIPLRRTMVVESKLAYPEGRAAAEILKVANKDQSSKKGKQGIK
                     EIALGSFIAAIFSLLSNGFKLAASESNFAFIWNKMAFGFSMGYSLALLGAGYLVGLAG
                     AIALFVGMFLAWGIFTPYLSNFEFDSAKNAVDLASSVWSSKVRLIGTGAIAIAALWTL
                     IELLKPVIEGIKEIVKNVKITNQEKNERTNIDLSLKSIFILFVLMVVGLFITFYSFVE
                     DANLSIYYQMLFSFVGTLVSVLIGFFVAAACGYMAGLVGSSSSPISGIGLIGVIISSI
                     VFLVLGVELFQDPMLSKFAVALAIFTTSVILATAAISNDNLQDLKTGHLVGATPWKQQ
                     VALLVGCVFGALAIVPVLNLLYQAYGFVGAMPREGMDASSALAAPQANLMSTIAQGIF
                     HHNIEWGYMAFGVFVGILMIIIDKILKGTQKMSLPPLAVGIGIYLPPAINIPLVIGGI
                     LKYIVMQHLTKKYAKNSHKEEKLASCEQRGTLFASGLIVGESIFGVIIAGITVFSVSM
                     GGSENPLALNLANFHDSELFALIFFVGVVLYFIKRIVKKDA"
BASE COUNT         1130 a          558 c          368 g          816 t
ORIGIN      
        1 ttccagcatt taaaatccca ctataataca aataaaagaa aacaaatcct aaaataatac
       61 gataaattcc aaaagggata aagtcgaatt tagaaataaa ttttaagaaa aattttataa
      121 ctaaaactgc aacaataaaa gcagtgataa aacctatgcc taaaggaatt aaagaatttg
      181 cattgctaag aagctcaggc tctttataaa tgctataagc tgtagcgata atcatcgttg
      241 gaatggcaag caaaaaacta aactcagccg caacttttct attaaatcct agcaaaagtc
      301 caccaataat acttgctcca cttcttgaag taccaggaat catggctaaa gattgaaaaa
      361 tacctatgca aaaagcttgt ttaaaactta tttcttctaa agaattgata cgatattgtt
      421 tatttttatg tgcaagttct ataagaataa acacaacacc gccaaaaatg agcattccaa
      481 ccacaaccca accattaaat aaagcattta agtattttgc cacaaaaagc cctataactc
      541 cagtaggaaa aaatccaact gcaagtttta accaaatatc aagcccttga aacaatttac
      601 gccaaaatac aaaaatgacc gccaaaatag aaccaagctg gatgataatc aaaaagcttt
      661 tccaaaactc atctatatcg atacctaaaa tagttgtacc taaaatcata tgtcctgttg
      721 aagaaatagg taaaaactca gtcagacctt ctataattcc aagtattaaa gcatataaat
      781 tttccatttt aatccttgaa tgataattgc aaaagaaaaa ttatatcaga atggattaaa
      841 tggggtttta accccaaaaa ttaagcatct tttttaacaa tacgcttaat gaaatataat
      901 acaactccca caaaaaagat aagtgcgaaa agctcgctat catgaaaatt tgctaaattt
      961 aaagctaaag gattttcact accacccata cttactgaaa atacagtaat tcctgcgata
     1021 attaccccaa aaatactttc acccactata agccctgaag caaaaagcgt gcctctttgc
     1081 tcacaacttg caagtttttc ttctttatga gaattttttg catatttttt agtcaagtgt
     1141 tgcattacaa tatattttaa aattccgcct ataactaaag gtatatttat agcaggggga
     1201 aggtaaatac ctattccaac ggctaaaggc ggcaaagaca ttttctgtgt tccttttaaa
     1261 attttatcta taataatcat taaaattcct acaaatacac caaaagccat ataaccccac
     1321 tctatattgt gatgaaaaat tccttgggcg atagtgctca ttaaatttgc ttgcggtgct
     1381 gctaaagctg atgaagcatc cataccttct cttggcattg ctccgacaaa accataggct
     1441 tgataaagca aatttaaaac aggaactata gccaaagcac caaaaacaca gcctacaagt
     1501 aaagcaactt gttgtttcca aggagtagct ccgactaaat gtcctgtctt taaatcttgt
     1561 aaattatcat tcgaaatagc agctgtagct aaaataacac tagtagtaaa aatagctaat
     1621 gctactgcaa atttagaaag cataggatct tgaaaaagtt ccacacctaa aaccaaaaaa
     1681 acaatagaag aaataataac accaataagt ccgattccag aaataggact agaagaagat
     1741 cctacaagtc ctgccatata tccgcaagct gctgcaacaa aaaaacctat taaaacagaa
     1801 actaaagttc caacaaatga aaatagcatt tgataataaa tacttaagtt agcatcttca
     1861 acaaaactat aaaaagtaat aaataaaccc acaaccatta aaacaaaaag tataaaaata
     1921 ctttttaaag aaaggtctat atttgttctt tcattttttt cttgattggt aattttaaca
     1981 tttttaacaa tttctttaat accttcaata acgggtttta aaagttctat taaagtccaa
     2041 agcgctgcta tagcaatagc tcctgttcct ataagcctta ctttagaact ccatacacta
     2101 gaagctaaat ctacggcatt ttttgcacta tcgaattcaa aatttgaaag atagggagta
     2161 aaaatacccc aagctaaaaa catacctaca aaaagagcta tagcacctgc taaaccaact
     2221 aaataacctg cccctaaaag tgccaaagaa tatcccatag aaaaaccaaa agccatttta
     2281 ttccaaataa aagcaaaatt actctcactt gcagcgagtt taaaaccatt gcttaacaaa
     2341 ctaaaaatag cagctataaa agagcctaat gctatttctt taatgccttg ttttcctttt
     2401 ttactactct gatctttatt ggctactttt aaaatttcag ctgcggctct accttcagga
     2461 taagcaagct tgctttcaac caccatagtc cttcttaatg gtatagtaaa aagcactcca
     2521 agtccgccac cacaaagaca tatcataaaa gtttgccaaa gtggaaattc actccaatac
     2581 ccacacataa aaagccctgg gataacaaaa ataactgatg ataaagttcc tgctgctgaa
     2641 gcttgagttt gaaccatatt attttctaaa atatttgaag tcttaaaaag actcaaaacc
     2701 gccatagaga tgaccacagc tggaattgat gatgaaaaag taagtcccac ttttaacccc
     2761 aaatatacat ttgaagctgt aaaaataata gttaaaatac ttcccaaaat caaacccctt
     2821 aaggtaagtt ctggtaaatt ttgttttttg tacatcattt ctccgtttta aa
//
LOCUS       DAZBIH010000136         2663 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.137, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000136 DAZBIH010000000
VERSION     DAZBIH010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2663
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.137"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            279..671
                     /locus_tag="ACHFOB_001629"
     CDS             279..671
                     /locus_tag="ACHFOB_001629"
                     /inference="COORDINATES: protein motif:HMM:NF012245.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HFN5800403.1"
                     /translation="MAEQTSLLSLNTSIEAARAGKLGRGFAVVADEVRKLSENTQMGL
                     GEMEGAIKLVIQTIQSIAKSSNSSTQEMNFIRDKSNEFSKIISNLINSGKEISDKLEQ
                     RSNVSEDFEKNVNELKCYEDVLAKLNQC"
     gene            complement(723..1076)
                     /gene="rplT"
                     /locus_tag="ACHFOB_001630"
     CDS             complement(723..1076)
                     /gene="rplT"
                     /locus_tag="ACHFOB_001630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HFN5800404.1"
                     /translation="MARVKTGVVRRRRHKKVLKLARGFYSGRRKHFRKAKEQLERSLV
                     YAYRDRRRKKRDFRRLWIVRINAACRLNDLSYSRFINGLKKAGIELDRKILADLAMND
                     AAAFAKIAEAAKKAL"
     gene            complement(1170..1361)
                     /gene="rpmI"
                     /locus_tag="ACHFOB_001631"
     CDS             complement(1170..1361)
                     /gene="rpmI"
                     /locus_tag="ACHFOB_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HFN5800405.1"
                     /translation="MPKMKSVKSAVKRFKVGKNKIKRGSAFRSHILTKKPAKRMRDLR
                     TAKYVHSTNVKAVEKMLGI"
     gene            1517..>2663
                     /locus_tag="ACHFOB_001632"
     CDS             1517..>2663
                     /locus_tag="ACHFOB_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800406.1"
                     /translation="MTINSANPYQNLTLSNPLQNSSALNLIKDSKALDQEGNENSLEQ
                     LSYIFNNTTYASEFGFRINEEGFFDKDLNKIANIPESYNINIKSVRSIAKELAKQDEN
                     LNYNKIDLPYLLNSYHSSLKSINSEFLQDDNAYLSRDLISKLSSGFSTDNGEFLSQIS
                     RIYNNQEEIDLALSNITNLNTLMLDNKITNFHFDKAIENTSSNEILKPYLTKNAEVSK
                     SGLLMNFIYHDIKTQNEKEFNFFMKPATLELSSHQNLQKILKGETDIEDYIKKENEKK
                     MSFDLYLYVNGVDKKTSTQDKLSVFFQQYINYQKDMDLREFANSSSIFQIYIDQNRND
                     FDALKKQYQNQSQDTQRLEEANQLRSNSIENFLDRRQKQANINKILNS"
BASE COUNT         1050 a          396 c          341 g          876 t
ORIGIN      
        1 agaaattaca aatgagatta aaataaaata atcttaaatc aactcaaaca aaatacatca
       61 gaaattgata aaaatacaag catatttaaa gaaatttttg aaaaacttga aaatataaga
      121 agaagtctta caaccattag tgaaagtttt actaatttca ctaactacct agaatacaac
      181 ctttaccaaa gcgaagaaaa aatgaattta gaaaaagaag tacaatcttc tttgaaaata
      241 tagatcaatt aaatagtatt ttagatctta tttcagagat tgctgaacaa actagccttt
      301 tatctttaaa tacaagtata gaagctgcta gagctggaaa acttggtcgt ggatttgcag
      361 ttgtagctga tgaagttaga aaactttcag aaaataccca aatgggtcta ggtgaaatgg
      421 aaggagctat caaattagtt attcagacca tacaatccat tgcaaaaagc tccaattcta
      481 gtactcaaga aatgaatttt ataagagata aatctaatga attttccaaa atcatttcaa
      541 atcttataaa ttcaggtaaa gaaatttcag ataaattaga acaaagaagc aatgtcagcg
      601 aagattttga aaaaaatgta aatgaactca aatgttatga agatgttcta gctaaattaa
      661 atcaatgcta aaaaattaag aatttcaaga atcaaaaatc ttgaaattct tacactaaaa
      721 aatcaaagtg ctttttttgc ggcctctgca atttttgcaa aagcagcagc atcattcata
      781 gctaaatctg ctagaatttt tctatcaagt tcaatgcctg cttttttaag accattgata
      841 aatcttgaat aacttaaatc attgagtctg caagcagcat tgatacgcac aatccaaaga
      901 cgacggaagt ctcttttttt acgacgtcta tcacgataag catagacaag acttctttct
      961 aattgttctt ttgcttttct aaaatgtttg cggcgtccac tataaaaacc acgcgctaat
     1021 tttaaaactt ttttatgtct gcggcgtcta acaacacctg tttttactct tgccattttt
     1081 atttcctttc ataaagtggc gtccaaattt ggagcttgcc cttgaaattt tatctcagag
     1141 gggagtttga atgactttta gtcaaaaact taaattccta gcattttttc aacagctttt
     1201 acatttgtgc tatgcacata tttagctgtg cgaagatcac gcattctttt tgcaggtttt
     1261 ttagtcaaaa tatgacttct aaaagctgag cctcttttga ttttattttt acctactttg
     1321 aagcgtttaa ctgcgctttt aacgcttttc atctttggca tacgctttcc ttatttagat
     1381 aaatttttat ttttcaaatt aaaagaaaag ctaaatacta tcaaattttt tctaattttt
     1441 gactgaattt aatttttaaa aaacttggca caccttttgc ttataaaaaa tcagcaatat
     1501 tttggaaaga tttaaaatga ctataaattc ggcaaatcca tatcaaaatt taaccttatc
     1561 taatcctttg cagaatagct ctgctctaaa tttgattaaa gatagcaaag ccttagatca
     1621 agaaggaaat gaaaatagct tagaacaatt aagctatatt tttaacaaca ccacttatgc
     1681 tagtgaattt ggatttagaa tcaatgaaga aggttttttt gataaagatt taaataaaat
     1741 tgcaaatata ccagaatctt ataatatcaa cattaaaagc gttagaagca tagcaaaaga
     1801 actcgcaaaa caagatgaaa atttaaacta caataaaatt gatctacctt atcttttaaa
     1861 tagctatcat agttcattaa aatctataaa ttcagaattt ttacaagatg ataatgctta
     1921 tttaagtcgc gatcttattt caaaactatc atcaggtttt tcaacagata atggagaatt
     1981 tttaagccaa atttcaagaa tttacaacaa tcaagaagaa attgatttgg cattaagcaa
     2041 tatcacaaat ttaaatactt taatgttaga taataaaata actaattttc attttgataa
     2101 agccatagaa aatacttctt ctaatgaaat tttaaaacct tatttaacta aaaatgcaga
     2161 agtatcaaaa tctggtcttt taatgaattt tatctaccat gatataaaaa ctcaaaacga
     2221 aaaagaattt aactttttta tgaaacctgc cactttagaa ctaagctctc atcaaaattt
     2281 acaaaaaatt ctcaagggcg aaacagatat agaagattac atcaaaaaag aaaatgaaaa
     2341 aaagatgagt tttgatcttt atctttatgt taatggcgta gataaaaaaa caagcactca
     2401 agacaaacta tctgtatttt ttcaacaata tattaactac caaaaagata tggatttaag
     2461 agaatttgca aattcaagtt caatatttca aatttatatc gatcaaaatc gcaatgattt
     2521 tgatgctctt aaaaaacaat atcaaaatca aagtcaagat acgcaaagat tagaagaagc
     2581 aaatcaacta cgttctaact ctatagaaaa ttttttagat cgtcgtcaaa aacaagcaaa
     2641 tataaataaa attttaaact ctt
//
LOCUS       DAZBIH010000137         2555 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.138, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000137 DAZBIH010000000
VERSION     DAZBIH010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2555)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2555)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2555
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.138"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1156)
                     /locus_tag="ACHFOB_001633"
     CDS             complement(<1..1156)
                     /locus_tag="ACHFOB_001633"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN5800407.1"
                     /translation="MRTYFSKIGFVLAVAGGAVGLGNAWKFPTLSAENGGFVFVLLYL
                     FFTLTIGFSIFLAEVAMGRLSKSDLANAYSNLAIKYGNRWRYGGVFMLGGIFVLSFYL
                     VIMGWVLKYTVVSLYYLPKTLDEAASNFQNLITTNLTSSVFFFTLSFFLTLLIVSKGL
                     IKGIEKLNVVIMPSLFLMLVFMLFYCMGFKQGFANAFSYLFYPDFSHFKFSSIAEALG
                     LAFFTLCLGIGCIVTYSSALDKKTNFIKSSVYIVLINLLISFIMGLIVFTFIFEFGAD
                     PHTQGAGIVFVSLMSLFNQLGALGYIFAFCFFLALFFAGITSAVSMIEPLTFYMINNY
                     QISRVKALFLIGLFVFVFGICCILSLNLNFFSMFSFFGKDFFTLLDKLTSN"
     gene            complement(1169..2503)
                     /locus_tag="ACHFOB_001634"
     CDS             complement(1169..2503)
                     /locus_tag="ACHFOB_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HFN5800408.1"
                     /translation="MSSKFSKIGFILAVAGSAVGLGNAWKFPTLVGQSGGSAFILLYI
                     ILTLGVGFVIFLAELSIGKISEKDPVNAYEKLAPSNKKAWSYVGFTMIGAILIVSFYT
                     LVIGWIVKYVFLSITGNLPMDLEVSKAQFGFFTSEDFLSQFICFTLVFLCVFYIVSKG
                     VKNGIEKLNVWMMPSLFILLILMLVYAISKDGFMMAVKFLFVPDFSKINTSNVLEALG
                     LAFFSLSLGVGTIITYSASLPDKTNFITSTLNIIFINLLVGLLMGLVVFTFIFEFGYN
                     PNQQGPGLVFISLATLFEKIGVIGCIFGAAFFISLIFAGITSAVSMIEPFAFYLINTF
                     GMSRKKALILIGIVVYILGMLCILSSLKSTQFGFFGMSFFDLLDSISSKVIMPLGGIL
                     AAIFVGFVMKKEALKILFEPYMRGIFFELWYVFLRFISPLAVVIVMIAAFLK"
BASE COUNT         1155 a          469 c          277 g          654 t
ORIGIN      
        1 aatttgaagt taatttatcc aataaagtaa aaaaatcttt tccaaaaaaa ctaaacatag
       61 aaaaaaaatt taaatttaat gacaagatac aacaaattcc aaaaacaaaa acaaataaac
      121 ctattaaaaa tagagcttta acacgagaaa tttgatagtt attaatcata taaaaagtta
      181 aaggctctat cattgaaaca gctgaagtaa taccagcaaa aaaaagtgct aagaaaaaac
      241 aaaatgcaaa aatatagcct aaagctccaa gttgattaaa caaactcatc aaggatacaa
      301 aaacaattcc tgctccttga gtatgcggat cggctccaaa ttcaaagata aaagtaaaaa
      361 caataagtcc catgataaaa gaaatcaata agttaatcaa aacaatatac actgaacttt
      421 ttataaaatt tgttttttta tccaaggctg atgaatatgt aactatacaa cctattccca
      481 agcataaggt aaaaaatgca agccctaaag cttcggcaat agagctaaat ttaaaatgtg
      541 aaaaatcagg ataaaataaa taagaaaaag catttgcaaa accttgctta aatcccatgc
      601 aataaaacaa cataaaaaca agcattaaga acaagctagg cattataaca acatttaatt
      661 tttcaatccc tttgattaaa cctttagata ctattaataa agtaagaaaa aaagataaag
      721 tgaagaaaaa aacagaactt gtcaaatttg tagtaattaa attctgaaaa ttacttgctg
      781 cttcatctaa agttttggga agataataaa gactaactac agtatatttt aaaacccatc
      841 ccatgataac tagataaaaa gagaggacaa aaataccacc taacataaaa acgccaccat
      901 atcgccatct attgccatat tttatggcaa gatttgaata agcatttgca agatcacttt
      961 tacttaaacg tcccatagcc acttcagcta aaaaaatact aaatcctata gttaaagtaa
     1021 aaaacaaata taaaagcaca aaaacaaaac cgccattttc tgcgcttaaa gttgggaatt
     1081 tccaagcatt acctaaacca acagctccac cagcaacagc caatacaaaa ccgatttttg
     1141 aaaaatatgt tctcattatt tttcaaactc actttaaaaa agcggctatc ataactataa
     1201 caacagccaa aggggaaata aatctcaaaa acacatacca aagttcaaaa aatatacccc
     1261 tcatataagg ttcaaataaa atttttaaag cttctttttt catcacaaat cccacaaaaa
     1321 tagctgccaa aattccacct aaaggcataa taaccttact tgaaatacta tcaagcaaat
     1381 caaaaaaact cattccaaaa aatccaaact gagtactttt taaagaagat aaaatacaca
     1441 acattcctaa aatataaaca acaattccta ttaaaatcaa agctttttta cggctcatac
     1501 caaaagtatt aataagataa aaagcaaaag gctctatcat tgaaacagct gaagtaatac
     1561 cagcaaagat taaagaaata aaaaacgctg ctccaaaaat acaaccgatc accccaattt
     1621 tttcaaataa agtagccaag gaaataaaaa caagtcctgg tccttgctga ttaggattgt
     1681 aaccaaattc aaagataaaa gtgaaaacaa ccaaacccat taatagacca actaaaagat
     1741 tgataaaaat aatatttaaa gtactggtaa taaaattagt tttatcaggc agactagcag
     1801 aataagtaat aatcgtccca acacccaaag aaagactaaa aaaggcaagt cctaaagctt
     1861 caagaacatt tgaagtgttg attttggaaa aatcaggcac aaaaagaaat ttaaccgcca
     1921 tcataaaacc atctttacta atagcataaa caagcatcaa gattagtaaa ataaataatg
     1981 aaggcatcat ccaaacattt aacttttcaa tcccattctt aacaccttta gaaacaatat
     2041 aaaaaacaca taaaaaaacc aaagtaaaac aaataaactg acttaaaaaa tcctcgcttg
     2101 taaaaaatcc aaactgcgct ttacttactt ctagatccat aggcaaattt ccagtgatac
     2161 ttaaaaacac atatttaact atccaaccaa tcaccaaggt ataaaaagaa actattaaaa
     2221 tcgcccctat catagtaaaa ccaacataag accaagcttt tttatttgaa ggtgctaact
     2281 tttcataggc attaaccgga tctttttcac taatttttcc tatgctaagc tcagctaaaa
     2341 atatcacaaa acctacaccc aaagtaagaa ttatataaag caaaataaaa gcagatccac
     2401 cactttgacc tactagtgtt ggaaatttcc aagcattacc caagcccact gctgaacctg
     2461 ctaccgctaa aatgaaacct atttttgaaa atttagaact caatgttaca accttaactt
     2521 aaaaattatt ttaaaatatt attaaagcaa aaaaa
//
LOCUS       DAZBIH010000138         2408 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.139, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000138 DAZBIH010000000
VERSION     DAZBIH010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.139"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            228..1562
                     /locus_tag="ACHFOB_001635"
     CDS             228..1562
                     /locus_tag="ACHFOB_001635"
                     /inference="COORDINATES: protein motif:HMM:NF024573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HFN5800409.1"
                     /translation="MDKQVMINRSGLKSIVIQGLFEKYDYKINFENGVKILLSENGYG
                     KTTVLNIINSILERNVNYLADLDFKSVDLAINDKTYHISKILNKDDASMIEEYLKHLD
                     GMYDVGFFLKEIKQRKINIKKLKYLIYNRTEQNRRIYPRRLIDYVDKINDIVADYLYK
                     QIEKIEKINFKVLFYPTYRRVEAALEEVVDSDFFDEEHRFLTRRNLRYRNSYRRIEFG
                     MDDVKHIIQNKLNEIKNEANELYVNMSSEIINDLIDDKVKCDKKDIDIDKVKIVIKRI
                     GESRIKHYDKLENIINTQDKKNEFLTYYLDKLSGIYDKQKALDLRLSNFEKVCNKYLI
                     KKQIQYDDTLLSMKVLDDEREIDFDSLSSGEKQIISIFAKVYLDMDAKCIFIIDEPEL
                     SLSVEWQRTFLQDIYESNNIELLLATTHSPFIYDNIFEDYIVDLEKYRVNNG"
     gene            1555..2403
                     /locus_tag="ACHFOB_001636"
     CDS             1555..2403
                     /locus_tag="ACHFOB_001636"
                     /inference="COORDINATES: protein motif:HMM:NF025844.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4435 domain-containing protein"
                     /protein_id="HFN5800410.1"
                     /translation="MDKKNKNVIFQDIIASKSKVDIFVLLEGDDDIKYYGPIIDNRLG
                     DNKKIRYYTCKGKSEVLLLLKRIQESTKLDLSKKIMSFIDRDFDFEQNLEHTYITESY
                     SIENYYFSNEAINKTMKYLLKVDDLELNNKDVKNEVDKIIKERDEKLEDIVFVNAIYC
                     LQKTKSLECGIQPKLNKIKEYDAIIKIDQDKIKDYIEDYIEVSKDEIDLQIEYMKKNL
                     VYETRGKYIFSLMKKKYRIFCDKFNKEKKRPSSIDISLLNNIIVSFAACADKPKDLIN
                     YIDKYR"
BASE COUNT         1000 a          165 c          409 g          834 t
ORIGIN      
        1 tggtcagaca tttgcagaaa atgatgaatt aaaaaattat gtaggatttt acaaaagctg
       61 aaaaacttaa aagtaggata atttctaatc ttttttgatt tttgtgtttt tatgtatttg
      121 tattgtacag ataatgtgag aatatattat gattttaagt ttaaggtaaa aaaggtataa
      181 taaaaatttt tatttttaat tactttgaat atatttttgg agtttttgtg gataagcagg
      241 ttatgataaa taggtccggt ttaaaaagca tagtaattca aggtttgttt gaaaaatatg
      301 attataaaat taattttgaa aatggtgtca aaatattatt atcagaaaat ggatatggta
      361 aaacaactgt tttaaatatt attaattcta ttttagaacg taatgttaac tacttggctg
      421 atttagattt taaaagtgtt gatttggcga ttaatgataa aacatatcat attagtaaaa
      481 tattaaataa agatgatgct agtatgatag aagaatattt aaaacactta gatggtatgt
      541 atgatgttgg atttttttta aaagaaatta agcaaagaaa gataaatata aaaaaactta
      601 aatatttaat atataataga acagagcaaa atcgtagaat ttatcctaga agattgattg
      661 attatgttga taaaataaat gacattgtgg cagattattt atataaacaa atagagaaaa
      721 tagaaaaaat aaattttaaa gttttatttt accctactta caggcgtgta gaggctgctt
      781 tagaggaagt tgtagattct gatttttttg atgaagaaca tagattttta actagaagga
      841 atttgcgtta taggaatagt tatagaagaa ttgaatttgg aatggatgat gttaaacata
      901 ttattcagaa caagcttaat gaaataaaaa atgaagcgaa tgaattatat gttaatatga
      961 gcagtgaaat tattaatgat ttgatagatg ataaagtaaa atgtgataaa aaagatattg
     1021 atattgataa agtaaagata gttatcaaga gaattggtga aagcagaatt aagcattatg
     1081 ataaattgga aaacataatc aatacgcagg acaaaaagaa tgaatttctt acttattatt
     1141 tagacaaatt atctggtatt tatgataagc aaaaggcgtt agatttaaga ttgagtaatt
     1201 ttgagaaagt atgtaataaa tatttaatta aaaaacagat tcaatatgat gataccttgc
     1261 tttcgatgaa agttttagat gatgagaggg aaatagattt tgatagttta tcatccggtg
     1321 aaaagcaaat tatttctata tttgctaagg tatatttaga tatggatgct aaatgtattt
     1381 ttattataga tgagccagag ctttcccttt cagttgagtg gcaaaggact tttttacaag
     1441 atatttatga atcaaacaat atagagttac tgttagcaac cactcattct ccttttattt
     1501 atgataatat ttttgaagat tatattgttg atttggaaaa atatagagtg aataatggat
     1561 aaaaaaaata aaaatgtaat ttttcaagat attattgcaa gtaagagcaa agtcgatatt
     1621 tttgttttat tagagggtga tgatgatata aagtattatg gaccaataat agataataga
     1681 ttgggtgaca ataaaaagat aaggtattat acttgtaaag gtaagagtga agtattgtta
     1741 ttattaaaaa gaatacaaga atctacaaag ttagatttaa gtaaaaagat tatgtcgttt
     1801 atagatagag attttgactt tgagcaaaat ttagagcata catatataac agagtcatat
     1861 tccatagaaa attattattt ttctaatgaa gccattaata aaacaatgaa atatttatta
     1921 aaagtggatg atttggagct taacaataaa gatgtaaaaa atgaagtaga taaaatcata
     1981 aaagaacgag atgagaaatt ggaagatatt gtttttgtaa atgcgatata ttgtttacaa
     2041 aagacaaaat cattggagtg tggtattcaa cctaagctaa ataaaattaa agaatatgat
     2101 gcaataatta aaatcgatca ggataaaatc aaagattata tagaagatta tatagaggtg
     2161 agtaaagatg agatagattt gcaaattgaa tatatgaaga aaaatttggt atatgaaact
     2221 agaggaaaat atatattttc tttaatgaaa aagaaatata gaattttttg tgataaattt
     2281 aataaagaga aaaaacgacc tagttcaata gatatttcac tgttaaataa tattattgta
     2341 tcatttgcag cttgtgcaga caaaccaaag gatctcataa attatattga taaatataga
     2401 taactatt
//
LOCUS       DAZBIH010000139         2353 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.140, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000139 DAZBIH010000000
VERSION     DAZBIH010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2353
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.140"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..1125)
                     /locus_tag="ACHFOB_001637"
     CDS             complement(<1..1125)
                     /locus_tag="ACHFOB_001637"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800411.1"
                     /translation="MKEKLFISVRDDGVATRLLSILNAMYLADKFYDIRNMRFFWNDE
                     IVLFGNYYINNNSRKFENCNIIGQSVGKVESIFSSNFIKKHYLENKYLYTTNMAYDKN
                     ASYPSHTLDLLRMGFNKNYAYLLEQVLNNKYIYVHQHDLSLQFHGIESNNQYKNKLKE
                     MWSYIDFNQCLKQQILNANQKSNNLDKFIIVHVRSGDIIYNYSNARKFNLEGVYHATP
                     LELAAAIIAKNKYDNIVIVGDDLTSTQMLKDIFKSNRVFHISDFRDDNLSNLELLIFD
                     VVFMSNSSKIYGTYSALVLLSSIIGKNKILQNNYNVFNEQEQYQYFKKYNPFFSQTHN
                     SQKAFSLFHMYLLSFKNKDTCDTSIKYLKKALIYDLDNDKY"
     gene            complement(1122..>2353)
                     /locus_tag="ACHFOB_001638"
     CDS             complement(1122..>2353)
                     /locus_tag="ACHFOB_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009882950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN5800412.1"
                     /translation="RMDGVEVVWFDHYFYYDDIEQPDIIPKTILESYKFNHSCIIKQK
                     EWLNRMLTFQYSSFWFGWHGMIDFNHLKSIHLKFLNQVLHEDHYFAKLLFAQANKIYV
                     LKTKLYYYRQRANSIMTSRDNPSFENTPVYIRKIYKNLNHDAKLVKEFYRSSSLLITA
                     CMVYQFTQTHQDLPNIKLFEQIFMQKLKSWRNEILSFPEQYLEFMFENTLQRINFLEQ
                     NSCLHLLKFISMFFSDLTIIKNNLTKDQIYLNQILENKDKILTTQTNQIYNLNTTLEN
                     KNQLLIAKQNLINFQNNYGKAKTRIQNHLSYKLGQALIINSKSVLGYLSLPFIILSIV
                     ISHKQEQKAYKFKVKKNPNLALPPLETYPDYNEALKEKECFTYKLGEEFIKASKNWYG
                     GGYIKLRLKIKKLKREQ"
BASE COUNT          829 a          305 c          276 g          943 t
ORIGIN      
        1 atatttatca ttatctaaat cataaattaa agcttttttt aaatacttta ttgaagtatc
       61 gcacgtatct ttgtttttaa aacttaataa atacatatga aataaagaaa aagctttttg
      121 agaattatgt gtttgtgaaa aaaacggatt atatttttta aaatattgat attgttcttg
      181 ctcgttaaat acattgtaat tgttttgaag tattttattt ttccctataa tagaagataa
      241 taaaaccaaa gcactatatg ttccataaat tttagaagag ttggacataa aaaccacatc
      301 aaaaattaat aattccaaat tagataaatt atcatctctg aaatctgaaa tatgaaaaac
      361 tctatttgat ttaaaaatat ctttgagcat ctgtgtagaa gttaaatcat cacctacaat
      421 tactatatta tcatatttat ttttagctat aatagctgca gccaactcta atggtgttgc
      481 atgataaaca ccctctaaat taaattttct agcattagaa taattataaa taatatctcc
      541 acttctaaca tgaacaatga taaatttatc aagattatta cttttttgat ttgcatttaa
      601 aatttgctgc tttaagcatt gattgaaatc tatatacgac cacatctctt ttagcttatt
      661 tttatattga ttatttgatt cgattccatg aaactgtaaa cttaagtcat gttggtgtac
      721 ataaatgtat ttattattta acacttgctc taataaatat gcatagtttt tattaaatcc
      781 cattcttaat aaatcaagcg tatggcttgg atatgaagca tttttatcgt atgccatatt
      841 agtggtataa agatatttat tttctaaata atgtttttta ataaagttgg aactaaaaat
      901 agactcaact ttacctacgc tttgaccaat tatattgcaa ttttcaaatt tccttgaatt
      961 attgtttata tagtaattgc caaataatac aatttcatca ttccaaaaaa atctcatatt
     1021 tcttatatca taaaacttat cagctaaata catagcattt aagattgaaa gcaatcttgt
     1081 agcaacacca tcatctctaa cagatataaa taatttttct ttcattgttc cctctttaac
     1141 tttttaatct taagtcgcaa cttgatatac ccccccccat accaattctt actagcttta
     1201 ataaattctt ctcctagttt ataagtaaaa cattcttttt cttttaaagc ttcattataa
     1261 tcaggataag tttctaaagg aggtaaagct aaatttggat ttttctttac tttaaattta
     1321 taagcctttt gttcttgttt atgtgaaata acaatactta atattataaa aggtaaagat
     1381 aaatagccta atacactttt agaatttata atcaaagcct gtcctagttt ataggataga
     1441 tggttttgga ttcttgtttt agcttttcca taattatttt ggaaatttat taggttttgt
     1501 tttgcaatta ataattgatt tttattttcc aaggttgtat ttaaattata aatttggtta
     1561 gtttgtgtag tcaaaatttt gtctttattt tctaggattt gatttaaata tatttgatct
     1621 ttggtaagat tattttttat tatggttaaa tcagaaaaaa acatacttat aaattttaac
     1681 aaatgtaagc aagaattttg ctccaaaaag ttgattcttt gcaaggtatt ttcaaacata
     1741 aattcaagat attgttctgg aaaggataaa atttcatttc tccatgattt taatttttgc
     1801 ataaaaattt gttcaaaaag ctttatattg ggcaaatctt gatgggtttg tgtaaattga
     1861 tataccatgc aagcagttat caaaaggctg ctggagcgat aaaattcttt aacaagtttt
     1921 gcatcatgat ttaaattttt ataaattttt cttatatata caggagtatt ttcaaaagaa
     1981 gggttatctc ttgaggtcat aatactattt gctctttggc gataataata aagttttgtt
     2041 tttaatacat aaattttatt tgcctgagca aataataatt ttgcaaaata atgatcttca
     2101 tgtagaactt gatttaaaaa ttttaagtgg attgatttta agtggttaaa atcaatcatg
     2161 ccatgccatc caaaccaaaa agaagaatat tgaaaagtta acattctatt aagccattct
     2221 ttttgtttta ttatacacga gtgattaaat ttataacttt ccaaaatcgt tttaggtatt
     2281 atatctggtt gttctatatc atcataataa aaataatgat caaaccagac cacttcaacc
     2341 ccatccattc tag
//
LOCUS       DAZBIH010000140         2320 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.141, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000140 DAZBIH010000000
VERSION     DAZBIH010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.141"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..746)
                     /locus_tag="ACHFOB_001639"
     CDS             complement(<1..746)
                     /locus_tag="ACHFOB_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SH3 domain-containing protein"
                     /protein_id="HFN5800413.1"
                     /translation="MKSCLYFTFIVLFLTACSTKNLTSLHHENLEQKNENQHYAKLEY
                     EQNVSILPQFAYDINFDAKRYKKYFFKPWHDSFKNYKGQNIFWSFPLYLNSKNTYYFF
                     NKQIIPLSWFKNAINNANIQEFGKLNQKALIIQNTIIKNLPTQRAILKNPFFENEGIP
                     FDYASDGILNAGTPVLISHFSKDKRYAFVLGEAGFGFVESKNLEFFSSDRAKIYENLN
                     FITPLKEKFPIYSEDGKFFFESRIGAIYPY"
     gene            795..2138
                     /gene="pif1"
                     /locus_tag="ACHFOB_001640"
     CDS             795..2138
                     /gene="pif1"
                     /locus_tag="ACHFOB_001640"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase Pif1"
                     /protein_id="HFN5800414.1"
                     /translation="MLDKLEKILAYDNVFLSGGAGVGKSFLTNELIKSYRKQKKLAIA
                     LGSSALSAFNIGGVTLHSFFCLGYCDDMMKLSALDRNQKQKEKLTKLKELLKTIELII
                     IDEISMVSASVFEMIGFRLKNSQFNGKILVVGDFFQLPPVIKEKKETLFNHSYYAFSS
                     FFWQDLNFKNIKLSQPKRTQNMEFYNHLSLIRQGFLDEKILSFFESLRIDYKELENLE
                     NDYTLLCGINKKVNNINQEKLSKLETPLVCFKAQVKKEDKRIKDEELDSWIRSLNILE
                     ELNIKIGARIIFCVNNWDKNYYNGEQGIIEDILYEEEKIYISIIKNNGMKILLEPYTF
                     FMEELEQSGKDFVVNILVSVTQFPIKLAYAITIHKSQGMSIEKLVCDIDHIFENGQLY
                     VALSRATNPNTLKIYSTKKINFGFYFANILKIDSNVIEFYKKHNFLDLEIQEQII"
     gene            2148..>2320
                     /locus_tag="ACHFOB_001641"
     CDS             2148..>2320
                     /locus_tag="ACHFOB_001641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800415.1"
                     /translation="MKKIFLSVFLVLSLNAQNLEIDKIRTDLYSKSGANVLKKVEISL
                     EFDGNNLKENENK"
BASE COUNT          875 a          245 c          354 g          846 t
ORIGIN      
        1 tagtaaggat aaatagcgcc aattctactt tcaaagaaaa atttaccatc ctcgctatag
       61 ataggaaatt tttcttttag tggtgtgata aagttaagat tttcatagat tttcgctcta
      121 tcgcttgaga aaaattccaa atttttactt tcaacaaatc caaatccagc ttcacctaaa
      181 acaaaagcat aacgcttatc tttactaaaa tgtgaaatta agacaggggt tccagcattt
      241 aaaatgccat cgcttgcata gtcaaaagga attccttcat tttcaaaaaa aggatttttt
      301 aagatagctc tttgggttgg aagattttta atgattgtat tttggataat taaagctttt
      361 tgattaagtt taccgaattc ttggatattt gcgttattta tagcgttttt aaaccatgaa
      421 agtggaataa tttgtttatt gaaaaaataa taagtatttt ttgaatttaa atataaagga
      481 aaggaccaaa aaatattttg tcctttgtaa tttttaaatg aatcatgcca aggtttaaag
      541 aaatattttt tatatcgttt tgcatcaaaa ttaatatcgt aagcaaattg tggcaaaatg
      601 cttacatttt gttcgtattc aagttttgca taatgttgat tttcattttt ttgttctaaa
      661 ttttcatgat gaagtgaagt taaatttttt gttgaacaag ctgttaaaaa tagcactata
      721 aaagtaaaat ataaacaaga tttcataatc aaccttttag aaaaaatagt tataattaaa
      781 gccaaggaaa tataatgctt gataaactag aaaaaatttt agcttatgat aatgtttttt
      841 taagtggtgg tgctggagtt ggtaaaagct ttttgacaaa tgagcttatc aaatcttata
      901 gaaaacaaaa aaaattagcc atagctcttg gttctagtgc tctatcggcg tttaatatag
      961 gcggtgttac tttacacagc tttttttgtt tagggtattg tgatgatatg atgaaattaa
     1021 gtgcattgga tcgcaatcaa aaacaaaaag aaaaattaac aaaacttaaa gagcttttaa
     1081 aaacgattga gcttattatt atcgatgaaa tttccatggt tagtgcaagt gtttttgaaa
     1141 tgataggctt tagacttaaa aattctcaat ttaatggaaa aattttagtt gtaggagatt
     1201 tttttcaatt gcctcccgta attaaagaaa aaaaagaaac tttatttaac cattcttatt
     1261 atgctttttc ttcatttttt tggcaagatt taaattttaa gaatattaaa ctttctcaac
     1321 ctaaaagaac gcaaaatatg gaattttata accatttatc tttgattaga caaggttttt
     1381 tagatgaaaa aattttaagc ttttttgaat ctttgcgaat tgattataaa gaattagaaa
     1441 atttagaaaa tgattatact ttactttgtg gtatcaataa aaaagtaaac aatatcaatc
     1501 aagaaaaatt aagcaaactt gagaccccgc ttgtatgctt taaagctcag gttaaaaaag
     1561 aagataagag aataaaagat gaagagcttg attcttggat tagaagctta aatatattgg
     1621 aagaattaaa tattaaaata ggcgctcgta ttattttttg tgtaaataat tgggataaga
     1681 attattataa tggagagcaa ggcattatag aagatattct ttatgaagag gagaaaattt
     1741 atattagcat tattaaaaat aatgggatga aaattttact tgaaccttat acttttttca
     1801 tggaagaact tgagcaatca ggtaaagatt ttgttgttaa tattctcgta agtgttacac
     1861 agtttcctat taaattagct tatgctatta ctatacacaa atcacaaggt atgagcattg
     1921 aaaaattagt gtgtgatatt gatcatattt ttgaaaatgg acagctttat gtcgctcttt
     1981 ctcgcgctac aaatccaaat actttaaaaa tttattctac aaaaaagata aattttggat
     2041 tttattttgc taatatttta aaaatagatt ctaatgtgat cgaattttat aaaaaacata
     2101 attttttaga tcttgaaata caagaacaaa tcatttaaag gcattaaatg aaaaaaatat
     2161 ttttaagtgt ttttttggtt ttgagtttaa atgctcaaaa tcttgaaata gataaaataa
     2221 gaacagattt gtattctaaa agtggagcaa atgttcttaa aaaagttgaa atttctttgg
     2281 aatttgatgg gaataattta aaagaaaatg aaaataagtt
//
LOCUS       DAZBIH010000141         2317 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.142, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000141 DAZBIH010000000
VERSION     DAZBIH010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2317)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2317)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2317
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.142"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..504
                     /locus_tag="ACHFOB_001642"
     CDS             <1..504
                     /locus_tag="ACHFOB_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HFN5800416.1"
                     /translation="FNLRKLLSDPKKLFSVLIFTLVVVFIQNYIAQNSSFEGKVVRII
                     DGDTIEVNHENKLARIRFFGIDAPELKQSFGKQSKEALSRILSGKQVEIIYKNKDTYG
                     RIVAIVKLNDVDINRFLVSKGYAWADTYYSNAYIKEQENAKKNHLGLWKESNPIEPYK
                     WRKHNKF"
     gene            513..686
                     /locus_tag="ACHFOB_001643"
     CDS             513..686
                     /locus_tag="ACHFOB_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800417.1"
                     /translation="MKKYTLMILLALGISGCFVNERGISNRFYDDCKEYYDGSGTYHK
                     DCPKNWVDIKMTP"
     gene            complement(687..1265)
                     /locus_tag="ACHFOB_001644"
     CDS             complement(687..1265)
                     /locus_tag="ACHFOB_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800418.1"
                     /translation="MAKKDNFEEYAQLEEYASAEDISRVRAELLTCPELNTSLAGTII
                     EIDKNYAKSILITTSEMVADDQGLIFDAFIFAAANYVAQASINKEFSVIIGSKCFFYA
                     PLKLGDVLELEAHALFDETSKKRDVKVVGHVKEIKMFEGTIQVVSTDEHIFKLKRPPL
                     NTVKPTENQEQGTKINNPEAVAAALMASVGGK"
     gene            complement(1338..2228)
                     /gene="cmoB"
                     /locus_tag="ACHFOB_001645"
     CDS             complement(1338..2228)
                     /gene="cmoB"
                     /locus_tag="ACHFOB_001645"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0002098 - tRNA wobble uridine modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic
                     acid(34) synthase CmoB"
                     /protein_id="HFN5800419.1"
                     /translation="MSRIKMQENLLEKQFLNHPLYTKIQELKALNLTCNFSLDDSVNL
                     STNSQAKDEILAITKELKPWRKGPFKIDDLFIDTEWQSFIKFNILKPFMNEISQKCVA
                     DIGCNNGYYMFKMLEFNPAKLIGFDPSIKYRLQFELINALAKTPIKYELLGVEDLPSY
                     SLKFDVIFCLGVIYHRSDPVKMLKDLKAGLNKNGVVFLDTMYIEDEREIALVPNKTYS
                     KIPNIYFVPSISALKNWCERAGFKEFEVLATKKTDENEQRKTEWIDSFSLENFLDPKD
                     KNLTIEGYEAPKRVYIRIKI"
BASE COUNT          778 a          339 c          364 g          836 t
ORIGIN      
        1 tttaatctga gaaaattact aagtgatcca aaaaaacttt tttctgtatt aatcttcact
       61 cttgtagttg tttttatcca gaactatatt gcccaaaatt ctagttttga aggaaaagta
      121 gttagaatta ttgatggaga tactatagaa gttaatcatg aaaacaaact cgctagaata
      181 agattttttg gtatagatgc accagaactt aaacaaagtt ttggaaagca atcaaaagaa
      241 gctttaagta gaattttaag cggcaaacaa gttgaaatta tttataaaaa taaagatact
      301 tatggtagaa ttgttgctat tgtaaagctt aatgacgttg atattaatcg atttttagta
      361 agcaaaggct atgcttgggc tgatacttac tatagtaacg cttatatcaa agaacaagaa
      421 aatgctaaga aaaatcattt aggtctttgg aaagagagta atcctataga gccttataaa
      481 tggagaaaac acaataaatt ctaaggaaaa acatgaaaaa atatacttta atgatactat
      541 tagctttagg aatttctgga tgttttgtaa atgaaagagg gatttcaaat cgtttttatg
      601 atgattgtaa agagtattat gatggaagcg gaacttatca taaggattgc ccaaaaaatt
      661 gggtggatat taaaatgact ccttgattat tttccaccca cagaggccat taatgcagct
      721 gctacggctt ctggattgtt gattttggta ccttgttctt gattttcggt aggtttaaca
      781 gtattaagtg gcggacgctt gagtttaaat atatgctcat cggtgctaac aacttgtatc
      841 gttccttcaa acattttaat ttctttaaca tgcccaacca cttttacatc tctttttttg
      901 gaggtttcgt caaaaagtgc atgagcttca agttctaaaa catcgcctaa tttaagcgga
      961 gcataaaaaa aacattttga tccaataatc actgaaaatt ctttattgat agaggcttgt
     1021 gctacatagt ttgccgcagc gaaaataaag gcatcaaaaa tcaatccttg atcatctgct
     1081 accatttcgc ttgtggttat taaaattgat ttggcatagt ttttatcaat ttctataatg
     1141 gttccagcaa gcgaggtgtt taattcagga caagtgagta attctgctct aacacgagat
     1201 atatcttctg cagatgcgta ttcttcaagt tgtgcatatt cttcaaaatt atcttttttt
     1261 gccatatcta acctttaaat tctacttatc tacttcaaaa tatctaaatt tcaatatcgg
     1321 caaaaaataa aaagaattta tattttaatg cgtatataaa ctcttttggg tgcttcatag
     1381 ccttcaatgg taagattttt atcctttgga tctaagaaat tttccagcga aaaagagtct
     1441 atccattctg tttttctttg ttcgttttca tcggtttttt ttgtagccaa aacttcaaat
     1501 tctttaaatc ctgctctttc acaccagttt tttaatgcac taatgcttgg tacaaaataa
     1561 atatttggaa ttttagaata agttttatta ggcacaagag cgatttctct ctcatcttct
     1621 atatacatgg tatctaaaaa aacaactcca tttttattaa gtcctgcttt taaatctttt
     1681 agcattttta caggatcact tctatgataa atcaccccaa gacagaaaat cacatcaaat
     1741 ttcaagctat agcttggaag atcttctacg cctaaaagtt cgtattttat aggagtttta
     1801 gctaaagcat tgatgagttc aaattgcaaa cggtatttga tagaaggatc aaaacctatg
     1861 agttttgcag gattaaattc aagcatttta aacatataat aaccattatt acagcctata
     1921 tcagcaacgc atttttgaga aatttcgttc atgaaaggct ttagaatgtt gaatttaata
     1981 aaactttgcc attctgtatc gatgaaaaga tcgtctattt taaaaggacc ttttctccat
     2041 ggtttaagtt cttttgttat agctaagatt tcatctttgg cttgagaatt tgtagataaa
     2101 ttcacgctat catctaaaga aaaattacaa gtaagattga gagctttaag ttcttgaatt
     2161 ttagtgtata aagggtgatt tagaaattgt ttttcgagta aattttcttg catttttatc
     2221 cttgacattt gcttttaatg ctaaattata acattaaaag cttttatggc aatataaatc
     2281 tcatatgcat taagtatttg atcaaaaata aattttt
//
LOCUS       DAZBIH010000142         2225 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.143, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000142 DAZBIH010000000
VERSION     DAZBIH010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2225)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2225)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2225
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.143"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            19..282
                     /gene="rpsT"
                     /locus_tag="ACHFOB_001646"
     CDS             19..282
                     /gene="rpsT"
                     /locus_tag="ACHFOB_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HFN5800420.1"
                     /translation="MANHKSAEKRARQTIKKTERNRFYRTRLKNITKAVREAAANGDK
                     NAANEALKVANKSIHAMVSRGFIKKQTASRRVSRLALLVNKIA"
     gene            301..1368
                     /gene="prfA"
                     /locus_tag="ACHFOB_001647"
     CDS             301..1368
                     /gene="prfA"
                     /locus_tag="ACHFOB_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HFN5800421.1"
                     /translation="MLASKLDPFLKRFEELNSLLSSSDILNDISKMTTLSKEQKNLEP
                     IVLKAKEYLKTLDNIEENKALLNDPELGELAKEELKTLEELKPKLEEEIKILLLPKDP
                     NDERNIFLEIRAGTGGDEASLFVGDLVKAYARYAENRGYKLEIVSSSEGSVGGFKEII
                     MLVKGTGAYSRLKYEGGTHRVQRVPQTESQGRVHTSAITVAVMPEVDDIEIEINPNDL
                     KVDVMRSSGHGGQSVNTTDSAVRITHIPTGIVVVNQDGKSQHKNKESAMKVLKARLYE
                     MQESERLAKESEARKSQVGSGDRSERIRTYNFPQNRISDHRINLTLYRLDAIMQDGLF
                     DEIIEPLITHHQAQALQEQNL"
     gene            complement(1382..2137)
                     /locus_tag="ACHFOB_001648"
     CDS             complement(1382..2137)
                     /locus_tag="ACHFOB_001648"
                     /EC_number="1.14.14.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004392 - heme oxygenase (decyclizing)
                     activity [Evidence IEA];
                     GO_process: GO:0042167 - heme catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HugZ family heme oxygenase"
                     /protein_id="HFN5800422.1"
                     /translation="MNFESIISHMNDHHKSNLVDLCKKFGGIEQVQDVFLKSVDFNGL
                     DLVYNDKENLRVEFPKKADENTIKDTIISLCMSAKSEQNFSGVEKELNEFMLSFNSVA
                     LATLNTNGEVVCSYAPFVSTQWGNYIYISEVSEHFNNIKVNPNNIEIMFLEDESKAAS
                     VILRKRLRYRVNASFLERGERFDQIYDEFEKQTGGEGGIKTIRKMLDFHLVKLEFKKG
                     RFVKGFGQAYDIENGNVTHVGASGNPHKFPHKH"
BASE COUNT          825 a          375 c          344 g          681 t
ORIGIN      
        1 caaaaaagga aaatataaat ggcaaaccat aaatctgctg aaaaaagagc aagacaaact
       61 attaaaaaaa cagaaagaaa tagattctat agaacaagac ttaaaaatat aactaaagcc
      121 gtaagagaag ctgcagcaaa tggagataaa aatgctgcta atgaagcttt aaaagtagct
      181 aataaaagca ttcatgctat ggtaagtcgc ggtttcatta aaaaacaaac tgcttctcgc
      241 cgtgtaagcc gcttagccct tttagtaaat aaaatcgcat aattttctat atagttttta
      301 atgttagcta gcaaactaga tcctttttta aaacgctttg aagagttaaa ttctcttctt
      361 agcagttctg atatactcaa cgatatcagt aaaatgacta cactctctaa agaacaaaaa
      421 aatttagaac ctatcgtttt aaaagctaaa gagtatttaa aaactttaga caatatagaa
      481 gaaaataaag ctttgctaaa cgatccagaa cttggggaac ttgcaaaaga agaactaaaa
      541 actttagaag aattaaaacc gaaacttgaa gaagagatta aaattttact tcttcctaaa
      601 gatcccaatg atgaaagaaa tatttttctt gaaattcgtg caggtacagg tggtgatgag
      661 gcatctttat ttgtaggaga tcttgtaaaa gcttatgcaa gatatgctga aaatcgcggc
      721 tataaacttg agattgtaag ctctagcgaa gggagtgtag gtggatttaa agaaatcatc
      781 atgcttgtta aaggaacagg ggcttattca agacttaaat atgaaggtgg aacgcaccgt
      841 gttcaaagag ttcctcaaac agaatcccaa ggacgcgtgc atacttctgc tatcaccgtg
      901 gcagtaatgc cagaagttga tgatatagaa atcgaaatca atccaaacga tcttaaagtt
      961 gatgtgatgc gatcttcagg acatggtgga caaagtgtaa atactactga ttcagctgtt
     1021 cgtatcactc atatccctac aggtatagtt gtagtcaatc aagatggaaa aagccaacac
     1081 aaaaataaag aaagtgcgat gaaagtccta aaagcaaggc tttatgaaat gcaagagagt
     1141 gaaagactag caaaagaaag tgaagcaaga aaatcacaag taggaagcgg agatagaagc
     1201 gaacgcattc gcacttacaa ttttccacaa aatcgtatca gcgatcatag aataaatctt
     1261 actttatatc gcttagatgc cattatgcaa gatgggcttt ttgatgaaat catagaacct
     1321 ttaatcactc atcatcaagc ccaagcttta caagaacaaa atttataaga ttttatacaa
     1381 attaatgctt atgtgggaat ttatgtggat ttccactagc acctacatgt gtaacatttc
     1441 cattttctat atcataagct tgaccaaaac cttttacaaa gcgtcctttt ttaaattcaa
     1501 gctttactag atgaaaatca agcatcttgc gtatagtttt aatgcctcct tctcctccgg
     1561 tttgtttttc aaactcatca taaatttgat caaatctttc acctctctct aaaaagcttg
     1621 catttactct atagcgcaat cttttgcgaa gtatcacaga agcagcttta ctctcatcct
     1681 ctaaaaacat tatttctata ttgtttggat ttactttgat gttgttaaaa tgttcactta
     1741 cttcacttat ataaatataa tttccccatt gtgtgcttac aaaaggtgca tacgagcaaa
     1801 caacttctcc atttgtattt aaagttgcca aagctacaga attaaaactt agcataaatt
     1861 catttaattc tttttctacg ccactaaaat tttgctcact ctttgcactc atgcaaaggg
     1921 atattatagt atctttaatc gtgttttcat cggctttttt aggaaattcc actcgtaaat
     1981 tttctttatc attgtaaaca agatccaagc cattaaaatc aacacttttt agaaaaacat
     2041 cttgcacttg ctcaatacca ccaaattttt tacaaagatc gactaaattt gatttatgat
     2101 gatcattcat atgagaaata atgctttcaa aattcatttt tatcctttct tgattttaaa
     2161 ataaaatatt aaaaaaaatg gtatcaatta tcaaattaaa aagcacttaa aatatataaa
     2221 ttatc
//
LOCUS       DAZBIH010000143         2130 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.144, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000143 DAZBIH010000000
VERSION     DAZBIH010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2130)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2130)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2130
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.144"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..319)
                     /gene="nssR"
                     /locus_tag="ACHFOB_001649"
     CDS             complement(<1..319)
                     /gene="nssR"
                     /locus_tag="ACHFOB_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitrosative stress-sensitive transcriptional
                     regulator NssR"
                     /protein_id="HFN5800423.1"
                     /translation="MKDYLELLSSVGKLKKFQKNSILFYEGEEAKKFFILLKGKIRIY
                     KSTASDKEITLHYFNPPNFIAEMPAFKKLNYPANAIFEEDGEILEIDFINFQNLCSEN
                     KEFN"
     gene            414..797
                     /gene="ctb"
                     /locus_tag="ACHFOB_001650"
     CDS             414..797
                     /gene="ctb"
                     /locus_tag="ACHFOB_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="truncated hemoglobin Ctb"
                     /protein_id="HFN5800424.1"
                     /translation="MKFETINQESIAKLMEIFYEKVRKDKDLGPIFNNAIGTSDEEWK
                     DHKAKIGNFWAGMLLGEGDYNGQPLKKHLDLPPFPQEFFEIWLKLFEESLNIVYNEEM
                     KNVILQRAQMIASHFQNMLYKYGGH"
     gene            complement(794..>2130)
                     /gene="recG"
                     /locus_tag="ACHFOB_001651"
     CDS             complement(794..>2130)
                     /gene="recG"
                     /locus_tag="ACHFOB_001651"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HFN5800425.1"
                     /translation="NLHAYDEKSFFMFENLQNFSKDLKYIEIYNFLKRLKAKKTHFKA
                     HQINVFNIANWLKDLPFSLTKDQLNALKDIEKDLHSKEAKRRVIMGDVGCGKTLVLLG
                     AALMVYPKQAILMAPTSILAYQLYEEAKKFLPDFMNILFIKGGKKEKDLEQNIQKANL
                     VIGTHALIHLESHNAVLVMIDEQHRFGSAQREKIHSLNKQEFTPHFIQFSATPIPRTL
                     SMIQSELLNFSFIKQMPFEKDITTYCIQNEGFSKLSEKIKEEIVKNHQIIIIYPLVSA
                     SDKIPYLSLEQAKEYWQSHYEKVFVTHGKDKQKDEILERFRDEGNILLSTTVVEVGIS
                     LPRLSMIVIVGAERLGLATLHQLRGRVGRVGLKSTCYLYTKLKEIPSRLKEFASTLDG
                     FKIAELDLKNRLSGDLLDGFMQHGNEFKFFDFSKDEEILQKVKKDLAKKLPN"
BASE COUNT          744 a          345 c          276 g          765 t
ORIGIN      
        1 aattgaattc tttattttca ctgcataaat tttgaaaatt aataaaatca atttccaaaa
       61 tttctccatc ttcctcaaat atagcattag caggataatt taatttttta aaagcaggca
      121 tttctgctat aaaatttgga ggattaaaat aatgcaaagt aatttcttta tcacttgctg
      181 tacttttata aatgcgtatt tttcccttga gtaaaataaa aaatttttta gcctcttcgc
      241 cctcataaaa taaaatacta tttttttgaa atttttttaa ttttcctaca ctagataaaa
      301 gttctaaata atctttcatt atatacattt tccattctta acttatgtta aatttaattt
      361 atcttatttt tgctatatta acgccataaa attaacattt aagaaaggct tatatgaaat
      421 ttgaaacaat taatcaagaa agcatagcaa aactcatgga aatattttat gaaaaagtta
      481 gaaaagataa ggatttaggt cctattttta acaatgctat tggaacaagc gatgaagaat
      541 ggaaagatca taaagcaaaa ataggaaatt tttgggcagg tatgctttta ggcgaaggtg
      601 attataatgg gcaaccctta aaaaaacact tagatctacc tccttttcct caagagtttt
      661 ttgaaatttg gctaaaactt tttgaagaaa gtttaaatat agtttataat gaggaaatga
      721 aaaatgtcat tttacagcgt gcacaaatga tagcctcaca ttttcaaaat atgctttata
      781 agtatggtgg acattaattt ggcaattttt ttgccaaatc tttttttacc ttttgtaaaa
      841 tctcctcatc cttagaaaaa tcaaaaaatt taaactcatt tccatgttgc ataaaaccat
      901 cgagcaaatc tccactcaaa cgatttttaa gatcaagctc tgctatttta aacccatcta
      961 aagtgctagc aaattctttt aaacgactcg gaatttcttt aagtttagta taaagatagc
     1021 aagtactttt aagccctaca cgacctacac ggccacgaag ttgatgtaag gtagcaagtc
     1081 ctaaacgttc tgcacctaca atcactatca tgctcaatct tggcaaagaa atacctactt
     1141 ccaccactgt agtgcttagt aaaatatttc cctcatctct aaaacgctct aaaatttcat
     1201 ctttttgttt atcttttcca tgagttacaa aaactttttc ataatgactc tgccaatatt
     1261 ctttggcctg ctctaaagat aaataaggaa tcttatcact agcactcact aagggataaa
     1321 taatgataat ttgatgattt ttaacaattt cttccttgat cttctcgcta agcttagaaa
     1381 agccttcatt ttgtatgcaa taagttgtaa tatctttttc aaaaggcatt tgtttaataa
     1441 agctaaaatt taaaagttca gattgtatca tgcttaaagt tcttggaata ggcgtagctg
     1501 aaaactgtat aaaatgaggg gtaaattctt gtttatttaa agaatgaatt ttctcacgct
     1561 gagctgatcc aaaacgatgt tgttcgtcta tcattacaag tacggcatta tggctttcta
     1621 aatgaattag agcatgagtg cctataacaa gatttgcttt ttggatattt tgttctaaat
     1681 ctttttcttt tttaccccct ttaataaaca aaatattcat aaaatcaggt aaaaatttct
     1741 tagcctcttc ataaagctga tacgctaaaa tactagtagg tgccattaaa atagcttgct
     1801 taggataaac catcaaagcc gcaccaagta aaaccaaggt tttaccacac cccacatcac
     1861 ccataatcac acgccttttg gcttcttttg agtgtaaatc tttttctatg tcttttaagg
     1921 cattaagctg atctttagta agagaaaaag gcaaatcttt aagccaattg gctatattaa
     1981 aaacattgat ttgatgagct ttaaaatgcg tttttttagc ttttaaacgc tttaaaaaat
     2041 tatatatttc tatatatttt aaatctttgc taaaattttg caaattttca aacataaaaa
     2101 aacttttttc atcataagca tgcaaattta
//
LOCUS       DAZBIH010000144         2051 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.145, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000144 DAZBIH010000000
VERSION     DAZBIH010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 2051)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2051)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2051
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.145"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..236
                     /locus_tag="ACHFOB_001652"
     CDS             <1..236
                     /locus_tag="ACHFOB_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800426.1"
                     /translation="VLKDDLKPNIKEKIHFFTMFFTLFKLMAYVILVAGFLFLHRQDK
                     LDIFAYICGISSLLVCVFIFILYIKKYESKKNY"
     gene            214..1401
                     /locus_tag="ACHFOB_001653"
     CDS             214..1401
                     /locus_tag="ACHFOB_001653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HFN5800427.1"
                     /translation="MSPKKIIKSMTALFAGMAFLFAGNALMVSSIGVILKENGESSLA
                     VGVVSSCFFVGALVGTISAHKIISRIGHIRSFGLFGAIFGISAMLHTVSENLIFWAIL
                     RFFIGICYYGLLMVIESWLNEKSKNAIRSRILGFYEIVFYLAFGIGVLIIALNLSKHS
                     VFILSATLILLSSLPLNLIKIKEPVLPASSPISIPKIFDIAPLAIVTSFIAGMLINGF
                     FSMASLFILLQGFDTKAVSYFIFCGVLGGFIAQTIIGTISDKLGRKFAIITCASIGFI
                     TMLIFIFFKLHLYMQYFLGITLGIGIFCLYALALARANDVLVNKNKGVELGRGVLFCY
                     SLGSLFGPLILGFLMQYFEIKGFIWFYIISLAFLILFAINKPNILNKKFKKKPGNMVI
                     FDD"
     gene            1394..>2051
                     /locus_tag="ACHFOB_001654"
     CDS             1394..>2051
                     /locus_tag="ACHFOB_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HFN5800428.1"
                     /translation="MINTQLASQIANTQKNDLKVDNSASKDKTNLKDNPKEALAQALK
                     QNLGLSKDASSEEILAKFVQNETGTKLKELVNKLLDQINAQKNPDSPVLKQGKNLNLA
                     PNFANELKTLSTELAKSDTFTQVLDRLNQILKPASEIKNNNLAPLFKNSGVFLEAKLK
                     DALNEELLPKSFHSLLSTIKGLSSEKLSVQIAQLANTNLSPKDTLKELKNIINSSKIE
                     N"
BASE COUNT          694 a          276 c          311 g          770 t
ORIGIN      
        1 aagttctaaa agacgattta aagccaaata ttaaagagaa aatccatttt tttactatgt
       61 tttttactct ctttaaattg atggcttatg tgatattggt tgctggattt ttatttttac
      121 atcgccaaga taaattagat atctttgctt atatttgtgg aatttcatcc ttgctagttt
      181 gtgtgtttat ttttatttta tatataaaaa agtatgagtc caaaaaaaat tattaaatca
      241 atgacagcac tttttgctgg tatggcattt ttatttgcag gtaatgcctt gatggtaagc
      301 tctataggtg ttatattaaa agaaaacgga gaaagttctt tagctgttgg agtagtaagt
      361 tcttgttttt ttgtaggtgc tcttgttgga actatcagtg ctcataaaat tatttctcgt
      421 ataggtcata tacgctcttt tgggctattt ggtgctattt ttggaatttc agctatgctt
      481 catacagtaa gcgaaaatct tattttttgg gctattttaa gatttttcat aggaatttgc
      541 tactatggac ttttaatggt catagaatca tggcttaatg aaaaaagcaa aaatgccatt
      601 cgatctagaa ttttaggctt ttatgaaatt gttttttatc ttgcgtttgg tattggagtt
      661 ttaatcatag cgttaaattt gagcaaacat agtgtattta ttctcagtgc aactttaatt
      721 ttactttcat ctttaccttt aaatctaatt aaaatcaaag aacctgtttt acccgcatca
      781 agtcctattt ctatacctaa aatttttgat atagctcctt tagctatcgt cacaagcttt
      841 atagctggaa tgcttataaa tggctttttt tctatggcat ctttatttat acttttgcaa
      901 ggttttgata caaaagcggt ttcttatttt atattttgtg gggttttagg tggttttatt
      961 gcacaaacca tcataggaac tatttcagat aaacttggtc gcaaatttgc cattatcact
     1021 tgtgcaagca taggatttat cactatgctt atatttatct tttttaaact tcacttgtat
     1081 atgcaatatt ttttaggaat tactcttggt ataggaatat tttgtttata tgctttagca
     1141 cttgctagag caaatgatgt tttagtaaac aaaaataaag gtgtagagtt aggtcgtggg
     1201 gttctttttt gttattcttt gggctctttg tttggccctt taattttagg ttttttaatg
     1261 caatattttg aaatcaaagg ttttatatgg ttttatataa tttctttagc atttttaatt
     1321 ctttttgcta tcaataaacc aaatatttta aataaaaaat ttaagaaaaa gcctggaaat
     1381 atggtgatat ttgatgatta atactcaact agcaagtcaa attgccaata cgcaaaaaaa
     1441 tgatttaaaa gtagataact ctgcttcaaa agataaaaca aatttaaaag acaatccaaa
     1501 agaagcactt gcacaagctt taaagcaaaa tttaggttta agcaaggacg ctagtagtga
     1561 ggaaatacta gcaaaatttg ttcaaaatga aacaggtacc aaattaaaag aacttgttaa
     1621 taaactttta gatcaaatca atgctcaaaa aaatcccgat tcccctgtac ttaaacaagg
     1681 aaaaaattta aatttagctc ctaattttgc taatgaatta aaaaccttaa gtacagaact
     1741 tgcaaaaagt gatactttta cacaagtttt agacagatta aatcaaattt taaaacctgc
     1801 cagtgaaata aaaaacaata acttagctcc tttgtttaaa aattcaggcg tatttttaga
     1861 agctaaatta aaagatgctc taaacgaaga attactaccc aaaagttttc actctctttt
     1921 aagtacaatc aaaggtctta gtagtgaaaa actaagcgtt cagatagccc agcttgcaaa
     1981 tacaaattta agcccaaaag acactttaaa agaattaaaa aatattatta attctagcaa
     2041 aattgaaaat a
//
LOCUS       DAZBIH010000145         1998 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.146, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000145 DAZBIH010000000
VERSION     DAZBIH010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1998)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1998)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1998
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.146"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            8..>1998
                     /locus_tag="ACHFOB_001655"
     CDS             8..>1998
                     /locus_tag="ACHFOB_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HFN5800429.1"
                     /translation="MLNKELEIFKKNLSSYTQSCRKFFLKQGAFSLYHSKNMDNFIKK
                     AYDIVLKDYFDDFSPPSDNIPFCVLASKAYANNSLCFNESISLIFVYKDIKAFHLKPM
                     IKAFIEILNDAHLQIDSVILEFNGLYNASNELKTSIIQTRFICGSRILFKGIKTKFES
                     ILKENKNDFAKLLLENFKEFDIPFIKQEFNILKDFGGLNHLRSLESLLVLFKTSPKNY
                     ALNFIDEKKLSELRLAGDFLLSLKSAMNLLSAKDEDEFLLINVHDLSELMYKKAKKHF
                     GANELLVQKALQSMHTIGFYTHFLAKQIQDGLNHTLKQEYKFKTLVEVLEYLLKLEDK
                     HVIFDLNLVFALGRLKYGKKDIEKALILFEKIFYKRHSFCVLKLLLDSGILKDLCKPF
                     WTVRFLSDEEGNYSFDEQVFLMLSEFEKYEDELEILQKLKTDEKMILKLVILLSAIES
                     ENEISLAGIYRAYCSKFDLKNEILEWGLKIFKNNNALKDLVEKEDIYNPIVVSSLVSK
                     LENLENLELLYTLTWLKAKALNYNAFYFRVLDKLLENAKQGFEDENLLEESARRVKKE
                     LTLKRSKIFLEQDEILQDKIIHIKSNLFIIKNTFEDIVMISKLAKENDFKFWFSNETN
                     LSLQIVAPLHFNIAIILSSLTNLNLIFMNFFELFDDKIY"
BASE COUNT          747 a          199 c          305 g          747 t
ORIGIN      
        1 agaaattttg ttaaataaag aattagaaat ttttaaaaaa aatcttagtt cctataccca
       61 aagttgtaga aaattttttc ttaagcaagg ggcgtttagc ttatatcatt ctaaaaatat
      121 ggataatttc ataaaaaaag cttatgatat agttcttaaa gattattttg atgatttttc
      181 acctccaagt gataatatcc ctttttgtgt tttagcaagc aaagcatatg caaataatag
      241 tctttgtttt aatgaaagta tttctttgat ttttgtttat aaagatatta aggcttttca
      301 tttaaaacct atgattaagg cttttatcga aattttaaat gatgcgcatt tgcaaattga
      361 ttcggttatc ttagaattta atggacttta taatgctagc aatgagctta agacttctat
      421 aatacaaact cgtttcatat gtggttctag gattttattt aaagggatta agacaaaatt
      481 tgagagtatt ttaaaagaaa ataaaaatga ttttgccaag cttttgctag aaaattttaa
      541 agaatttgac attccattta taaagcaaga atttaatatc ttaaaagatt ttggcggatt
      601 aaatcattta agatccttag agagtttgct tgttcttttt aagacttctc caaaaaatta
      661 tgctttaaat tttatagatg aaaaaaaatt aagcgagttg cgtttagctg gagatttttt
      721 actttcttta aaatcagcga tgaatttatt aagtgctaaa gatgaggatg aatttttact
      781 tattaatgtt catgatttga gtgaattaat gtataaaaaa gctaaaaaac attttggagc
      841 aaatgagttg ttggttcaaa aggctttgca aagtatgcat actataggtt tttatacaca
      901 ctttttagca aagcaaattc aagatggatt aaatcatact cttaaacaag aatataaatt
      961 taaaactctt gtggaagttt tagaatactt attaaaactt gaagataaac atgttatttt
     1021 cgatcttaac ttggtttttg ccctaggaag attgaaatac ggtaaaaaag atatagaaaa
     1081 agctttaata ctttttgaga aaatttttta taaaaggcat agtttttgtg ttttaaaact
     1141 tttgcttgat agtggaattt taaaagattt atgtaagcct ttttggacag ttcgtttttt
     1201 aagcgatgaa gaaggaaatt atagttttga tgagcaagtt tttcttatgt taagtgaatt
     1261 tgaaaaatac gaagatgagc ttgagatact ccaaaaactt aaaaccgatg aaaaaatgat
     1321 tttaaagctt gtgatacttt taagcgctat agaaagtgaa aatgaaattt ctttagcagg
     1381 catatataga gcgtattgct ccaaatttga tttaaagaat gaaattttag aatggggtct
     1441 taagatattt aaaaacaata atgccttaaa agatcttgta gaaaaagaag atatatacaa
     1501 tcctattgtt gtaagtagct tggtttctaa gctagaaaat ttagaaaatt tagagctttt
     1561 atacacttta acttggctaa aggctaaggc tttaaattat aatgcttttt attttagagt
     1621 tcttgataaa cttttagaaa atgcaaaaca aggttttgaa gatgaaaatc tacttgaaga
     1681 aagcgcaaga agagtaaaaa aagaattaac acttaaaaga agtaagattt ttttagagca
     1741 agatgaaatt ttgcaagata aaatcataca tatcaaatca aatcttttta ttataaaaaa
     1801 tacttttgaa gatattgtta tgatttctaa attagccaaa gaaaatgatt ttaaattttg
     1861 gtttagcaat gaaacaaatc ttagtttgca aattgttgca ccacttcatt ttaatattgc
     1921 cattatttta agttctttaa caaatttaaa tcttattttc atgaattttt ttgaactttt
     1981 tgatgataaa atttattt
//
LOCUS       DAZBIH010000146         1931 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.147, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000146 DAZBIH010000000
VERSION     DAZBIH010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1931)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1931)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1931
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.147"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            99..1496
                     /locus_tag="ACHFOB_001656"
     CDS             99..1496
                     /locus_tag="ACHFOB_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PD-(D/E)XK nuclease family protein"
                     /protein_id="HFN5800430.1"
                     /translation="MEKFIERLLEEDIKFEKDVNNGLSDINIFDALNIETKENYHSKF
                     IAYLIDINKDHYQKNFAKVFLEKLGKSLVNTKFENLNIEDIKSVETEACIKDNRRIDI
                     LITLSDKRYIIIENKIYAKDQKNQLKDYINFVRKNIKNIKDCYKNILTIYLHQDECAS
                     PSDYSLGNFTIKTNLIKDKNENNVSYYLKMDYIWIKEWIDECIKIYEEKSTKDQKFIL
                     DIQNIIFTLNQYKSILQWYMTDEYTQRDDVLEFIFQNNIKMQNLKNAMILYRYNKNKS
                     ELKNLNEENYKKAKDIIQHKWSNICEYIIEEFFDSFEHKEIKIGDITFIGNKIEENRV
                     NHGVFIFYPIDYKNESIYPCIYIYFKKKYYDIIGLTFEISNDDEEDIENEKYKECLKL
                     FKDVKEENVRKYQNHYYCDKLINNEKLEGEYAFIYWLIENQNSKKDFIQILNDFFIQK
                     PIQEAYKGINDILNS"
     gene            1557..>1931
                     /locus_tag="ACHFOB_001657"
     CDS             1557..>1931
                     /locus_tag="ACHFOB_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent DNA methyltransferase"
                     /protein_id="HFN5800431.1"
                     /translation="MHFTLLNEKDFFNPYYRKKQIIQNEFDIFNKALMQYLERLESSQ
                     SENEDYLVANALSPFLTMLNFKTHIKTKQKGKSEIDLSISKDEFSKDLEVLIEAKKPN
                     SKEFITHTKVNSKALHETILYYF"
BASE COUNT          869 a          164 c          260 g          638 t
ORIGIN      
        1 tctacttaac ttgcctataa aattaataat cagttttttt agtttgtaat taaaaattta
       61 tttacatgta aaattgtata aaatttggaa agtgatacat ggaaaaattt attgaaaggt
      121 tgcttgaaga agatattaaa tttgaaaaag atgtgaataa tggtttgagt gatataaata
      181 tatttgatgc tttgaatatt gaaacaaaag aaaattatca ttctaaattt atagcttatt
      241 taattgatat aaataaggat cattatcaaa aaaattttgc aaaggtattt ttagaaaaac
      301 ttggtaagag tttagtaaat acgaaatttg aaaatttaaa catagaagat ataaaaagcg
      361 tagaaacaga agcctgcata aaagataata gaaggataga tattttaata acattaagtg
      421 ataaaagata tattataata gaaaataaaa tttatgcaaa agatcaaaaa aatcaattga
      481 aagattatat taattttgta agaaaaaata tcaaaaatat aaaagattgt tataaaaaca
      541 tattgactat atatttgcat caagatgagt gtgctagtcc tagtgattat agtttgggaa
      601 attttacaat aaagacaaat ttgattaaag ataaaaatga aaataatgtt agctattatt
      661 tgaagatgga ttatatatgg attaaggaat ggattgatga gtgtataaaa atatatgaag
      721 aaaaatcaac caaagatcaa aaatttattc ttgatataca aaacattatt tttactctaa
      781 atcaatacaa aagtatttta caatggtata tgacagatga gtatactcaa agagatgatg
      841 tactagaatt tatttttcaa aacaatataa aaatgcaaaa tttaaaaaat gcgatgattt
      901 tatatagata taacaaaaac aaatcagagc ttaaaaattt aaatgaagaa aactataaga
      961 aagctaaaga tattatccag cataaatgga gcaacatctg cgaatatata atagaagaat
     1021 tttttgatag ttttgaacac aaggaaatta aaataggtga tataactttt atcggcaata
     1081 aaatagaaga aaatcgtgtt aatcatggtg tgtttatatt ttatcctatt gattataaga
     1141 atgaaagcat atatccatgt atatatattt attttaaaaa aaaatactat gatattattg
     1201 gtttgacatt tgaaatttca aatgatgatg aagaagatat agaaaatgaa aaatataaag
     1261 aatgtttaaa attatttaaa gatgtaaaag aagaaaatgt tagaaaatat caaaatcact
     1321 attattgtga taaattaata aacaatgaaa aattagaagg agaatacgct tttatttatt
     1381 ggttgattga aaatcaaaat tctaaaaaag attttattca aattttaaat gattttttta
     1441 ttcaaaaacc tatacaggaa gcatataaag gtattaatga tatattaaat tcttaaaaaa
     1501 ttttatataa aagtaaaatt tgataaaata caaaatattt tttataaagg ttaaaaatgc
     1561 atttcacttt gctaaatgaa aaagattttt tcaacccata ctaccgcaaa aagcaaatca
     1621 ttcaaaatga atttgatata tttaacaagg ctttaatgca gtatttagaa agacttgaaa
     1681 gttcgcaaag tgaaaatgaa gattatcttg tagctaatgc acttagtcca tttttaacca
     1741 tgttaaattt caaaacccac atcaaaacca agcaaaaagg caaaagtgag attgacttat
     1801 ccatctctaa agatgagttt agtaaagact tagaagttct tattgaggct aaaaagccaa
     1861 attcaaaaga atttatcact catacaaagg taaattctaa agccttacac gagactattt
     1921 tatattattt t
//
LOCUS       DAZBIH010000147         1921 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.148, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000147 DAZBIH010000000
VERSION     DAZBIH010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1921)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1921)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1921
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.148"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            16..1440
                     /locus_tag="ACHFOB_001658"
     CDS             16..1440
                     /locus_tag="ACHFOB_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HFN5800432.1"
                     /translation="MKKLTNDFGNIIADNQNSLSAGAKGPLLMQDYLLLEKLAHQNRE
                     RIPERTVHAKGSGAYGEIKITADLSAYTKAKIFQKGEVTPLFLRFSTVAGEAGAADAE
                     RDVRGFAIKFYTKEGNWDLVGNNTPTFFIRDAYKFPDFIHTQKRDPRTHLRSNNAAWD
                     FWSLCPESLHQVTILMSDRGIPASYRHMHGFGSHTYSFINDKNERFWVKFHFKTQQGI
                     KNLTNQEAAELIAKDRESHQRDLYNAIENKDFPKWKVQVQILAEKDIEKLGFNPFDLT
                     KIWPHSFVPLMDIGEMILNKNPQNYFNEVEQAAFSPSNIVPGIGFSPDKMLQARIFSY
                     PDAQRYRIGTNYHLLPVNRAKSEVNTYNVAGAMNFDSYKNDAAYYEPNSYDNSPKEDK
                     SYLEPDLVLEGVAQRYAPLDNDFYTQPRALFNLMNDDQKTQLFHNIAASMEGVDEKII
                     TRALKHFEKISPDYAKGIKKALEK"
     gene            1497..>1921
                     /locus_tag="ACHFOB_001659"
     CDS             1497..>1921
                     /locus_tag="ACHFOB_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cj1386 family hemin-binding protein"
                     /protein_id="HFN5800433.1"
                     /translation="MTTLSLEEEKRFEELCKMAFNFARNNEYENLKIMIEAGLNVNLK
                     THKGDSLLMLAAYNNSYESAKMLLEKGAKVDEKNDRGQTPLAGVCFKGYLPMCELLVK
                     YGANIDENNGLGMTPYTFAIMFGRKDVAEFLLKKSKNNF"
BASE COUNT          730 a          281 c          334 g          576 t
ORIGIN      
        1 atttaggaga aaacaatgaa aaaattgact aacgattttg gaaacattat agctgataac
       61 caaaattcat taagcgcagg cgcaaaagga cctttactta tgcaagatta tcttttgctt
      121 gaaaaacttg ctcatcaaaa tagagaaaga attccagaaa gaaccgttca tgctaaggga
      181 agtggagctt atggcgaaat aaaaattaca gcagacttaa gtgcttatac caaagctaaa
      241 atttttcaaa aaggcgaagt tactccatta tttttacgct tttcaacagt agcaggtgaa
      301 gcaggtgcag cagatgctga acgcgatgtg agaggttttg ctattaaatt ttacactaaa
      361 gaaggaaact gggacttggt aggaaataac actccgacat tcttcatccg cgatgcttat
      421 aaattccctg atttcatcca tactcaaaaa agagatccaa gaactcatct aagaagtaat
      481 aatgctgctt gggatttttg gagtttatgt cctgaaagtt tacatcaagt aaccattctt
      541 atgagcgata gaggaattcc tgcaagttat cgtcatatgc atggatttgg aagccatact
      601 tatagtttta ttaatgataa aaatgaaaga ttttgggtga aattccattt taaaacccaa
      661 caagggatta aaaatcttac caaccaagaa gctgccgagc ttatagcaaa agatagagaa
      721 agtcatcaaa gagatctcta taatgctata gaaaataaag attttccaaa atggaaagtt
      781 caagttcaaa ttcttgctga aaaagatata gaaaaacttg gatttaatcc ttttgattta
      841 acaaaaattt ggcctcatag ttttgtacct ttgatggata taggcgaaat gattctaaac
      901 aaaaatcctc aaaattattt taatgaagtt gaacaagctg cctttagtcc aagcaatatc
      961 gttcctggaa ttggctttag ccctgataaa atgttgcaag ctagaatttt ttcatatcct
     1021 gatgcacaaa gatatagaat aggaactaat tatcatcttt taccagtaaa tcgtgcaaaa
     1081 agcgaagtga atacttacaa tgtcgctggt gctatgaatt ttgatagtta taaaaatgat
     1141 gctgcttatt atgaaccaaa cagctatgat aatagcccaa aagaagacaa aagctatctt
     1201 gaacctgatt tagtcttaga aggcgtagca caaagatatg ctccactaga taatgacttt
     1261 tatactcaac caagagcttt atttaatctt atgaatgatg atcaaaaaac tcaacttttt
     1321 cataatatcg ccgcttctat ggaaggagtt gatgaaaaaa ttatcactag agctttaaaa
     1381 cattttgaaa aaatttcacc tgattatgca aaaggaatta aaaaagcttt agaaaaataa
     1441 tttttacttg ccacttttgg tggcaaacta aagattataa taattaagga aaaacaatga
     1501 caactcttag tttagaagaa gaaaaaagat ttgaagagct ttgtaaaatg gcttttaatt
     1561 ttgcaagaaa taatgaatat gaaaatctta aaatcatgat agaagcaggt ttaaatgtaa
     1621 atttaaaaac tcataaaggc gatagcttgc ttatgcttgc agcttataat aattcttatg
     1681 aaagcgctaa aatgctttta gaaaaaggtg caaaagtaga tgaaaaaaac gatcgtggac
     1741 aaaccccatt agcgggagtt tgttttaaag gatacttacc tatgtgtgaa cttttagtta
     1801 aatatggagc aaatattgac gaaaacaatg gtttaggaat gacaccttat acctttgcta
     1861 ttatgtttgg acgcaaagat gtggcagaat ttttactcaa aaaatctaaa aataattttt
     1921 t
//
LOCUS       DAZBIH010000148         1919 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.149, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000148 DAZBIH010000000
VERSION     DAZBIH010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1919
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.149"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(49..876)
                     /locus_tag="ACHFOB_001660"
     CDS             complement(49..876)
                     /locus_tag="ACHFOB_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN5800434.1"
                     /translation="MPQLSIIIPLFNSCDFILRALQSCINQTLKDIEILIIDDKSKDN
                     SLNMVLEFAKKDPRIKIFQNEENLGTFASRNLGVLHSSSDFIMFLDSDDFLTPGACEI
                     AFKEMKKGFDLLCFDAFVHRVKTKQFYRFKQDGVFNQKEFLEFLSKQRHFCWSVWAKC
                     FRKDIILKNFEKVKFEKVKIDERLSYGEDVLFCYIYFMFCEKIAVFKTCIYHYEFNPN
                     GRYENKNKEILNQNYYDKKKSNEIIKRLSKEFLHDEFHQKLFEVLEREEVGVKNRLK"
     gene            935..1888
                     /gene="waaF"
                     /locus_tag="ACHFOB_001661"
     CDS             935..1888
                     /gene="waaF"
                     /locus_tag="ACHFOB_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008920 - lipopolysaccharide
                     heptosyltransferase activity [Evidence IEA];
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipopolysaccharide heptosyltransferase II"
                     /protein_id="HFN5800435.1"
                     /translation="MKIFIHLPTWLGDAVMASPALYAIKEHFKNAQFILYGSLVSTAL
                     FKEFPNSKIIIENKQSRYKQALSLRKELGKIDFSFAFRSAFSSKIILHILKTKQRYFF
                     DKNKHKEEHQVLKYLYFIENSLSIKAHFKDLKLPFKLKFQNPLVLKNGKKILGLNPGA
                     SFGSAKRWDVSYFAKVALNFSQSHEILIFGAGKAEQELCNEIYQILKEQNIKVKNLCN
                     KTTIKTLCQNIAFCDLFITNDSGPMHISAVYKVKTVAIFGPTKFTQTSPWQNENAKLV
                     HLDLACMPCMQKTCPLKHHKCMKDLKPEIIIEVSKQLLFLN"
BASE COUNT          706 a          327 c          216 g          670 t
ORIGIN      
        1 ctttatttta gagatatttt agaactaaaa tcaaaaaaaa tttttaatct attttaatct
       61 atttttcacc cctacttcct ctctctccaa aacttcaaat aatttctgat gaaattcatc
      121 atgtaaaaac tctttggaga gtctttttat gatttcatta cttttctttt tatcataata
      181 attttgattt aaaatttctt tatttttatt ctcatatctt ccatttggat taaattcgta
      241 atgataaatg caagttttaa aaacagctat tttctcgcaa aacataaaat aaatataaca
      301 aaaaagcaca tcttcgccgt aactcaaacg ctcatcgatt ttaacctttt caaatttaac
      361 cttttcaaaa ttttttaaga tgatatcttt tctaaaacac ttcgcccaaa ctgaccagca
      421 aaaatgcctt tgtttgctta agaattctaa aaattctttt tgattaaaaa ctccatcttg
      481 tttaaaacga taaaattgtt tggtttttac cctatgtaca aaggcatcaa aacaaagcaa
      541 atcaaaacct tttttcatct ctttaaacgc tatttcacaa gcaccaggtg tcaaaaaatc
      601 atcactatct aaaaacatta taaaatcaga actagaatgc aaaactccta aatttctact
      661 tgcaaaagtg cctaaatttt cttcattttg aaagattttt atccttggat cttttttagc
      721 aaattctaaa accatattta aactattatc tttactttta tcatcgataa tcaaaatttc
      781 aatatctttt aaagtctgat ttatacaact ttgcaaagct cttaagataa aatcacaaga
      841 attaaaaagc gggattatga tcgaaagttg tggcatattt ttcctaaatt ttgttaaaat
      901 aataaaaaca attctatcaa agtttaggaa atttatgaaa atttttatac atcttcccac
      961 ttggctaggc gatgcagtga tggcttcgcc tgctttatac gctataaaag aacattttaa
     1021 aaatgcccaa tttatccttt atggctcttt ggtttccaca gcacttttta aagaatttcc
     1081 taattctaaa atcatcatag aaaataaaca atctcgctat aaacaagccc tatctttacg
     1141 caaagaactt ggtaagatcg attttagctt tgcttttagg tctgcgtttt cttctaagat
     1201 tatcttgcat attcttaaaa cgaaacaaag atattttttt gacaaaaaca agcacaaaga
     1261 agaacatcaa gttttaaaat acctttattt tatagaaaac tcacttagta taaaagctca
     1321 ttttaaagac ttaaagcttc cctttaagct aaaatttcaa aaccctcttg tcttaaaaaa
     1381 tggtaaaaaa attctaggac tcaaccctgg tgcaagcttt ggaagtgcaa aaagatggga
     1441 tgtgagttat tttgctaaag tggctttaaa tttcagccaa agtcatgaga ttttaatctt
     1501 tggtgcagga aaagccgaac aagaactttg taatgaaatt tatcaaattt taaaagaaca
     1561 aaacataaaa gtaaaaaatc tttgcaataa aactaccatc aaaacccttt gtcaaaatat
     1621 cgctttttgc gatcttttca tcacaaatga cagtggacct atgcacataa gtgcggttta
     1681 taaggtaaaa accgtggcta tttttggtcc tacgaaattt actcaaactt caccttggca
     1741 aaatgaaaat gcaaaattag tacatttaga tctagcttgt atgccttgta tgcaaaaaac
     1801 ctgcccttta aaacaccaca aatgcatgaa agatttaaaa ccagaaatca tcatagaagt
     1861 aagtaaacaa ttgctatttc taaattaatt aaaattatac ttcacgtctt aaaaatttt
//
LOCUS       DAZBIH010000149         1745 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.150, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000149 DAZBIH010000000
VERSION     DAZBIH010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1745)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1745)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1745
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.150"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..1259
                     /locus_tag="ACHFOB_001662"
     CDS             <1..1259
                     /locus_tag="ACHFOB_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN5800436.1"
                     /translation="LDPDSKISLSCYENFYKNIPLMLKNIPFKRIIDERKGLFESCIV
                     VCAGPSLQKQIPLLKQYQENFVIFCVDGAYPLLVKHDITPDYVLNLDFEEYPLKFFKE
                     VNPENKTLFILSASTHPSVVDYLYKKQIPLSIALNDNLPYQNLHIDEFGYLEFGTHVG
                     HACYALAIALKFKNIIIIGQDLSYDKQGNSHFDSFDLGSDIDATLNIPTLKTIAYGGL
                     GEVLTHLAWDDYKRKLEDLFARNLELNFFNATEGGARIEFAKELDFKSCCKKFANLNN
                     KSNKYLPKTLTTNRGAKILNKILATFKREKQNTLICLEHAIRLNDVLKIILASDRKFP
                     IDFLKNTYESIAKFEIFLEENSFLNDGVLKGVIFHKGKLLSEVIVSKIEDEREYLLIY
                     LTFYKQWLEIFICRFQLKCDIYNFLV"
     gene            1342..>1745
                     /locus_tag="ACHFOB_001663"
     CDS             1342..>1745
                     /locus_tag="ACHFOB_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344727.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN5800437.1"
                     /translation="MGFRINTNVAALNAKANSDLNAKSLDASLSRLSSGLRINSAADD
                     ASGMAIADSLRSQANTLGQAISNGNDALGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINKLMEELDNIANTTSFNG"
BASE COUNT          657 a          202 c          275 g          611 t
ORIGIN      
        1 atttagatcc tgactctaaa atttctttgt cttgttatga gaatttttac aaaaatatac
       61 ctttaatgtt gaaaaatata ccttttaaaa gaattattga cgaaagaaaa ggactttttg
      121 aaagttgtat agttgtatgt gctggtccta gccttcaaaa gcaaattcca ttattaaaac
      181 aatatcaaga aaattttgtg attttttgtg ttgatggagc ttatcctttg cttgtaaaac
      241 acgatataac tcctgattat gtgttaaatc ttgattttga agaatatccg cttaaatttt
      301 tcaaagaagt taatccagaa aataaaacct tatttatatt atcggcaagt actcatccta
      361 gtgtggttga ttatctttat aaaaaacaaa ttcctttatc tatagcatta aacgacaatc
      421 ttccttatca aaatctccat attgatgaat ttggctatct tgaatttgga acccatgttg
      481 gacatgcttg ttatgcttta gcgattgctt taaaatttaa aaatataatt attattggac
      541 aagatttatc ttatgataaa caaggaaatt ctcattttga tagttttgat ttgggaagtg
      601 atatagatgc aaccttaaat attcctacat taaaaacaat tgcctatgga ggcttaggag
      661 aagttttaac acatttagct tgggatgatt ataaaagaaa attggaagat ttatttgcaa
      721 gaaatttaga attaaatttt tttaatgcta cagaaggtgg agctagaata gaatttgcaa
      781 aagagcttga cttcaagtcg tgttgtaaga aatttgcaaa tttaaataat aaatcaaata
      841 aatatttacc aaaaacttta acaaccaatc gtggtgctaa aattttaaat aaaattttag
      901 caactttcaa aagggaaaaa caaaatactt taatttgctt agaacatgct ataaggttaa
      961 atgatgtatt gaaaataatt ttagctagcg atagaaaatt ccctatagat tttttaaaaa
     1021 atacatatga aagtattgca aaatttgaaa tttttttgga agaaaattct tttttaaatg
     1081 atggtgtttt aaaaggagtt atttttcata aaggtaaatt attgagtgaa gttattgtta
     1141 gtaaaattga agatgaaaga gagtatttat taatatactt gacattttat aaacagtggc
     1201 ttgaaatttt tatttgcaga ttccaattaa aatgcgatat ttataatttt ttagtttaag
     1261 gtataaattt ttaaaaaaaa gtaacgatat agcatttaac aagctcatgg atgagtttga
     1321 aattatttaa aaggatttaa aatgggattt cgtattaaca caaatgttgc agcattgaat
     1381 gcaaaagcaa actctgatct taatgctaaa agtttagatg cttctttaag cagacttagt
     1441 tcaggtctta gaattaactc agcagcagat gatgcttcag ggatggcgat agcagatagc
     1501 ttaagatctc aagcaaatac tttaggtcaa gctatatcaa atggtaatga tgctttaggt
     1561 atcttacaaa ctgcagataa agctatggat gagcaattaa aaattcttga tactatcaag
     1621 actaaagcta ctcaagcagc tcaagatgga caaagtttaa aaacaagaac tatgcttcaa
     1681 gcagatatta ataaattaat ggaagagctt gataatatcg ctaatactac ttcatttaat
     1741 ggtaa
//
LOCUS       DAZBIH010000150         1615 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.151, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000150 DAZBIH010000000
VERSION     DAZBIH010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.151"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            98..440
                     /locus_tag="ACHFOB_001664"
                     /pseudo
     CDS             98..440
                     /locus_tag="ACHFOB_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002851872.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4878 domain-containing protein"
     gene            424..996
                     /locus_tag="ACHFOB_001665"
     CDS             424..996
                     /locus_tag="ACHFOB_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002825721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YiiX/YebB-like N1pC/P60 family cysteine
                     hydrolase"
                     /protein_id="HFN5800438.1"
                     /translation="MFYLNKILYFFLILFLLIGILGFFINSNPSNQIIKKPYLPFLEI
                     GDLVFRAGIGSESFLIENLSQSPYSHIAMVVKTSPTILIHATTDDDKNAKNQVILSSM
                     DDFLKLSHKIAIKRLKFDEKTKQKIVAKALEHLGRKFIISTDKDAFYCTTFLEQSINS
                     ITPFHLQYTLIKAPFNEGLYLFPQAFFENN"
     gene            1095..1442
                     /locus_tag="ACHFOB_001666"
     CDS             1095..1442
                     /locus_tag="ACHFOB_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800439.1"
                     /translation="MKKSILFASALLASSMLFADSLKLEGTIAQIYDNNKTLLIDSIY
                     GGQMAIKVLPNTEIEMDDCGIFGTDKDGTFKDLQVGNFLESKISYGIPATPNTQAIPV
                     ARKIEIQCYKKAY"
BASE COUNT          608 a          217 c          208 g          582 t
ORIGIN      
        1 ttattttgct ataattatga atattttaat ttatactatc aaaagaaaaa atgaaatttt
       61 ttaaactttc tttcttggct ttagttgcct ttttttagtg gcttacggtt cttcaaatcc
      121 tgaagattta gctaaaaatt ttacaaaaga tctttacagt ggtgatacta aatctgttat
      181 gagttacatt gatcttagcg aagctaaaag cgatgaagaa aaaaacattt gttagtgata
      241 aaatcactca agttgttgct gaaaatgcag ccaaagcaaa aagaatgggt ggtgttaaag
      301 atattcaaat tgaagaaaaa acaatcaata aagattctgc taaaatcaga gttttagtgt
      361 tatttaacaa tgataataat caaagcagca atgtttttct tgctaaaaaa gatagaaaat
      421 ggcttgtttt acttaaataa aattttatat tttttcttaa ttttattttt attgattgga
      481 attttgggtt tctttataaa ttccaatcct tcaaatcaaa tcatcaaaaa accctatcta
      541 ccttttcttg aaataggtga tcttgtcttt cgtgcaggaa taggaagtga aagtttttta
      601 atagaaaatt taagtcaaag cccttattct catatcgcta tggtagttaa aacttctcca
      661 actatactca tacatgctac aacagatgat gacaaaaatg ctaaaaacca agttatctta
      721 agctctatgg atgatttttt aaaactgagt cataaaattg ctattaaaag attaaaattt
      781 gatgaaaaaa ccaaacaaaa aatagttgct aaagctttgg aacatttagg cagaaaattt
      841 atcataagta cagataaaga tgctttttac tgcactactt ttttagaaca atctattaac
      901 tccattaccc catttcatct tcaatatact ctaatcaaag ctccttttaa tgaaggttta
      961 tatctttttc cacaagcttt ttttgaaaat aattaaagcg tattaatttt atgaaagtca
     1021 aaaattttta atttcacatt cacttcactt aaaaatttta taatgtcatc actttacatt
     1081 aaggagaaat aattatgaaa aaaagtattt tattcgcatc agcactttta gctagctcaa
     1141 tgctttttgc agatagtcta aaacttgaag gtactattgc acaaatttat gataacaata
     1201 aaaccttgct tattgactct atttatggcg gacaaatggc tataaaagtt ctaccaaata
     1261 ccgaaataga aatggatgat tgtggtattt ttggaacaga taaagatgga acttttaaag
     1321 atttacaggt tggaaatttt ttagaaagta aaatttctta tggaatacct gctacaccaa
     1381 atactcaggc tattccagta gctagaaaaa ttgaaattca atgttataaa aaagcttatt
     1441 aatataaatc ccttaacaag ggatttataa aaatcattct tcggcaaact acttcattac
     1501 tcttaaataa aaatttaaac tcttttttaa caagcaattt ataaaataac acttatattt
     1561 tcatctaagg caaataatga aaaaatggat ttttattgtt ttttgtttta tatta
//
LOCUS       DAZBIH010000151         1605 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.152, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000151 DAZBIH010000000
VERSION     DAZBIH010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1605)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1605)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1605
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.152"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            116..490
                     /locus_tag="ACHFOB_001667"
     CDS             116..490
                     /locus_tag="ACHFOB_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HFN5800440.1"
                     /translation="MKMRVYYEDTDAGGVVYHSNYLKFCERARSEIFFNKKVDIFDAS
                     KGHFLLAKANCNFLKPAKLGDMIEIKTKILEVKNASVEILQEIYKDEILLFKMELTLA
                     FIKNEKPARMDTQLKKLFEELF"
     gene            complement(482..>1605)
                     /locus_tag="ACHFOB_001668"
     CDS             complement(482..>1605)
                     /locus_tag="ACHFOB_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800441.1"
                     /translation="DVKPVENFYPKLSVQECNTNCLFDLLESRLYLSFLSEFTDQNDQ
                     FLSNVYAKLLNSITDFEKNVQKITSVKLAIIIPEKTIKSYSNTIINSSIAYLLRQRAE
                     IKVKVFLTGTEDSDKIRAALDAAQAQGYQYAIAGFTLKGANELKNYSGNMKIFIPTIH
                     KNNIQISNQNIIFGSIDYDAQIATLLSKSNANIAIFSDGSALSSNLNSRILAQNNNAR
                     IYTIEGEKLDFSRLLRSQGGVNNASIFFNTPLIKTALASSQLRIYNIHPYVLLSTQIN
                     YNPTFLSLTQQGDRENFIIANSINNHDDNLVYLNEIFNQSIDYNWIAYATSIGVDYFY
                     TEFLNKKSESLFDEKIKNSQVDYKVRLMQGKQASFEELK"
BASE COUNT          550 a          194 c          261 g          600 t
ORIGIN      
        1 ttattaaatt aagattggac ggaatttttt aatataaact aaaaagcgat atcaaagaat
       61 ttccgttgta taatctaatg ttttttaaat gtaaaatatt ttttaaggta aagcgatgaa
      121 aatgcgtgtg tattatgaag atactgatgc gggtggagtg gtgtatcata gtaattattt
      181 aaaattttgc gagagagcaa gaagtgaaat ttttttcaat aaaaaagtag atatttttga
      241 tgcatctaag ggacattttt tgcttgcaaa agcaaattgc aatttcttaa aacctgcaaa
      301 acttggagat atgatagaga ttaaaacaaa aattttagaa gtcaaaaatg cttctgtgga
      361 aattttacaa gaaatttata aagatgaaat tttgcttttt aaaatggaat taactttagc
      421 ttttattaaa aacgaaaaac cagctagaat ggatacgcag ttaaaaaagc tctttgaaga
      481 attattttaa ttcttcaaag cttgcttgtt tgccttgcat aagacgcact ttgtaatcaa
      541 cttgagaatt tttgattttc tcatcaaata aactttcgct ttttttattt aagaattcgg
      601 tataaaagta atcaactcct atactagtag cataagcaat ccagttataa tctatacttt
      661 gattaaaaat ttcattaaga tagactaagt tatcatcgtg gttattgatg gagttagcaa
      721 tgatgaaatt ttctctatct ccttgttgtg ttaaacttaa aaatgttgga ttataattga
      781 tttgagtgga taaaagcaca taaggatgaa tgttataaat tcttagttga gaacttgcta
      841 gagctgtttt gatcaatgga gtgttaaaaa atattgaggc attattaact ccaccttgtg
      901 atcttaaaag cctgctaaaa tcaagcttct cgccttctat agtatatatt ctagcattat
      961 tattttgagc aagaattctt gaatttagat tgcttgataa ggcagagcca tcgctaaata
     1021 ttgcgatatt agcgtttgat ttgcttaaaa gtgtggcaat ttgagcatca tagtcaatac
     1081 ttccaaaaat aatattttga tttgaaattt gtatgttgtt tttatggata gttggtatga
     1141 aaattttcat atttcctgag taatttttca actcattagc accttttaga gtaaatccag
     1201 ctatggcata ctgatatcct tgagcttgtg ctgcatcaag cgcggctcgg attttatcac
     1261 tatcttctgt gccggttaaa aaaactttta ctttgatttc agctctttgt cttaaaagat
     1321 aagctatgct tgaatttatt atagtatttg agtaactttt tatagttttt tctgggataa
     1381 ttatcgcaag tttaacagaa gtaatttttt gaacattttt ttcaaaatca gtaatggaat
     1441 ttaataattt tgcataaaca ttagatagaa attgatcgtt ttgatctgta aattcactta
     1501 aaaaactgag atacaatctt gattctaaaa gatcaaaaag acaatttgtg ttgcattctt
     1561 gaacgcttaa tttaggataa aaattttcaa caggttttac atcga
//
LOCUS       DAZBIH010000152         1468 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.153, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000152 DAZBIH010000000
VERSION     DAZBIH010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1468)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1468)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1468
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.153"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>1468
                     /locus_tag="ACHFOB_001669"
     CDS             <1..>1468
                     /locus_tag="ACHFOB_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="McrB family protein"
                     /protein_id="HFN5800442.1"
                     /translation="NINKLNKNEEFKLKNSNGHNMYSSALNYYKAFLIDYYEQDIFIT
                     ERVQSEESNMKIIPLNQILYGSPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKK
                     IFDEYVKNGQIVFTTFHQSYGYEEFVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKS
                     LKNYILSMQNENEIDLDKLIFEFANYINQDFLNKGNEFPLENKVSIKKILLNFKDEYR
                     SFSLGGSIKSPQSLTIDIIKRDYLNFKNKKILSFKDIKPKYDSQSDYHGNAIYYFMFY
                     NKLKEFENIQNEKFKIKKEILKSYIIIIDEINRGNVSKIFGELITLIEPSKRIGEKEE
                     LKVTLPYSGKEFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSIDC
                     EGINLQELLKAINTRIEYLLDREKTIGHAFFISVENLESLKKVFKNRIIPLLQEYFYN
                     DYALIDAVLNKNGMLEISVENKDYLKNMTEFIESDKIVY"
BASE COUNT          634 a          126 c          220 g          488 t
ORIGIN      
        1 aatataaata aattaaataa aaatgaagaa tttaagttaa aaaatagcaa tggacacaat
       61 atgtattcta gtgcattgaa ttattataaa gcttttttga ttgattatta tgaacaagat
      121 atttttataa ctgaaagagt gcaatctgag gaatcaaata tgaaaattat acccttaaat
      181 caaattcttt atgggtctcc agggacagga aaaacttatc atactataga taaagcttta
      241 gagattatat caaaagaaga aaaaatacaa attccaagtg aagatgatag aataaataga
      301 aaaaaaatat ttgatgagta tgtaaaaaat ggacaaatag tatttactac ttttcatcaa
      361 agctatggat atgaagaatt tgtagaaggt ataaagccta taatagacaa tgatgaaaat
      421 tctcaagaag taaaatatga tgtaaaagat ggaattttta aagaattatg tgataaatct
      481 ttgaaaaatt atattttatc aatgcaaaat gaaaatgaaa ttgatttaga taaattaatt
      541 tttgaatttg ctaattatat taatcaagat tttttaaata aaggaaatga atttccttta
      601 gaaaataaag ttagtattaa aaaaattctt ttaaacttta aagatgaata tcgttctttt
      661 tcattgggtg gttcaattaa aagtcctcaa agcttaacta tagatattat aaaaagagat
      721 tatctaaatt ttaaaaataa aaaaattcta tcttttaaag atattaaacc aaaatatgat
      781 agtcaaagtg attatcatgg taatgcaatt tactatttta tgttttataa taaattaaaa
      841 gaatttgaaa atatacaaaa tgaaaaattt aaaataaaaa aagaaatttt aaaatcttac
      901 ataattatca tagatgagat caatcgcggt aatgtaagta agatttttgg tgaacttata
      961 accttgatag aacctagcaa aaggataggt gaaaaagaag agttaaaagt gactttgcct
     1021 tatagtggca aagaatttgg agtgcctaaa aatgtttata ttataggcac tatgaataca
     1081 gccgatagaa gcataacttc tcttgataca gctttgcgaa gacgctttga atttattgag
     1141 atgatgcctg atgtgagcaa attatctata gattgtgaag gtattaattt acaagaatta
     1201 ttaaaagcta taaacactcg tatagaatat ttactagata gagaaaaaac cataggacac
     1261 gcatttttta taagtgttga aaatttagaa agtttaaaaa aggtttttaa aaatagaatc
     1321 atcccacttt tgcaagagta tttttacaat gactatgctt tgattgatgc ggttttaaat
     1381 aaaaatggta tgttggaaat tagtgttgaa aataaagatt atttaaaaaa tatgacagaa
     1441 tttatagaaa gcgataagat tgtttata
//
LOCUS       DAZBIH010000153         1444 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.154, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000153 DAZBIH010000000
VERSION     DAZBIH010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1444)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1444)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1444
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.154"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(38..1384)
                     /locus_tag="ACHFOB_001670"
     CDS             complement(38..1384)
                     /locus_tag="ACHFOB_001670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CitMHS family transporter"
                     /protein_id="HFN5800443.1"
                     /translation="MEIFLALLGFFSLGLIVWLLLKDYTTPALAFISVSISVACILLI
                     LERLGFGVGVALGVKGGVFDIKTLVVFIKDGVKSVTDTAALFVFSILFFSVLNASGFF
                     TKILNAFLSKMKANVYQVCILTVFIAAAVHLDGSGASTFLIVIPALLPIYERLGIRKT
                     SMLLIITSAMGVMNVIPWGGPTLRAATNIGMDANLLWHHIIPIQIVGLVLSLLLAIWI
                     AKIEIKRGAGAGNLSGINLNIEKSEHHNEKWFWLNLLVAIGVIGLLISGIIPSYICFM
                     IGLAIILPLNYPNLKTAKKVLDRASGGAMLMYITLIGAGILIGVFDKSGIMEKMGVLI
                     LNFVPDYLGAYIPLMVGILAVPMAIIFCTDSYFYGVMPIVLSVTKAFGAEPLTIAIIM
                     VIARNCATFISPVVPATLLGCGLAEVNIKDHIKRSFFYIWGISIICLIFAEVAGII"
BASE COUNT          580 a          300 c          158 g          406 t
ORIGIN      
        1 accaatcatt gaaaaatcaa aagttctttt attttaatta tattatccca gctacctcag
       61 caaaaatcaa gcaaataata cttatacccc atatataaaa aaagcttctt ttgatatgat
      121 ctttaatatt aacctctgct aaaccacaac ctagcaaagt tgcaggcaca acaggagaaa
      181 taaatgtcgc acaatttctt gctatcacca tgataatagc tatagtcaaa ggttcagcgc
      241 caaaagcctt agttacactc aaaactatag gcatcactcc ataaaaataa gaatctgtac
      301 aaaaaataat tgccattgga acagccaata tccctaccat caaaggaata taagcgccta
      361 aataatctgg aacaaaattt aaaatcaaaa cacccatttt ctccataata ccacttttat
      421 caaatacgcc tattaatatc ccagcaccaa ttaaagtaat atacataagc attgcaccac
      481 cacttgcacg atctaaaact tttttagctg tttttaaatt aggataatta agcggtaaaa
      541 ttattgcaag tcctatcata aagcaaatat aactaggaat aataccgcta attaaaagcc
      601 caataactcc aatagctaca agtaaattta accaaaacca tttttcatta tggtgttcgc
      661 ttttttctat atttaaattt attccagaca agttacctgc gcctgcacct ctttttattt
      721 ctatcttagc aatccaaatt gccaaaagaa gggataatac caaacctaca atctgaatag
      781 gtataatatg gtgccaaagc aaatttgcat ccattcctat attagtagcc gctcttaaag
      841 taggaccacc ccaaggaata acattcataa cccccatagc cgaagtaata atcaataaca
      901 ttgaagtctt tcttatacct aaacgctcat aaataggtaa taatgcaggt attacaataa
      961 gaaaagtaga agcacctgaa ccatctaaat gcacagcagc agcaataaaa acagtaagaa
     1021 tgcaaacttg atatacatta gctttcattt ttgataaaaa tgcatttaaa attttagtaa
     1081 aaaaaccact tgcatttaaa acactaaaaa agagtataga aaaaacaaac aaagctgccg
     1141 tatccgttac gcttttgact ccatctttaa taaaaacaac caatgtttta atatcaaaaa
     1201 cacctccttt aacccctaaa gctacaccca cgccaaaacc aagccgttca agaataagta
     1261 aaatacaagc tacactaata cttacactta taaaagctaa tgctggagta gtataatctt
     1321 ttagcaaaag ccaaactatc aatcctaacg agaaaaaacc caataaagct aaaaaaattt
     1381 ccatatccta tccttttgta tcatttttat tcgataataa aataggatat tttaactcca
     1441 actt
//
LOCUS       DAZBIH010000154         1378 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.155, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000154 DAZBIH010000000
VERSION     DAZBIH010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1378)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1378)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1378
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.155"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            151..1356
                     /locus_tag="ACHFOB_001671"
     CDS             151..1356
                     /locus_tag="ACHFOB_001671"
                     /EC_number="2.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002860360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 8 protein"
                     /protein_id="HFN5800444.1"
                     /translation="MLLSYNIVISCDNNYVKYVAVVIASIIKNTKINSQLKEYPYKFY
                     ILSNDISKNNILKLKKLIQHLSNSYYNCELIIHKIDDSKFHRFPKAWHVNHATYYRFE
                     IADIVEGNKCLYLDADVLVCGDIRELFYMELNNKVAGVVTDSCSRLWTKLYTKDNKTS
                     SYIEFDPLMYFNAGVILIDLNQWKKHDIKNKCIDAFNIYDHGGLADQSYLNIALKELT
                     YKLPLNWNLIVPEYILLDGYERHYVVNCLDEISEYNLAYTRSEFEEAMKNKKIVHFCA
                     AKPWWNLYYKNNKVDFNERNVWWEIALNLEEFKEEFYFLKNSLDSKHLNRQLNTIEWI
                     LKNGDKNSSNVLYSSYDIDNIKKIKNHLSYKLGNAIVLSFKYWYKGRLLKLPFELVSI
                     YKKHKRTKR"
BASE COUNT          565 a          135 c          202 g          476 t
ORIGIN      
        1 acaatgatat cttagaaatt ttatctaaaa attatgagtc ttctagattt tttaaacaat
       61 tgatagaata tgagtttttt gatttcttaa atagtgataa aggtaaaaat tggtatagtt
      121 ataaagaaat taaaacatag gaggcgaatt gtgttattat cttataatat agttatatct
      181 tgtgataata actatgtaaa atacgtggct gttgtcatag caagtattat aaaaaacaca
      241 aaaataaatt ctcagttaaa agaatatccg tataaatttt atatattatc taatgatatt
      301 agcaaaaata atatcttgaa attaaaaaag ttaattcaac atttgtcaaa tagctattat
      361 aattgcgaat taataatcca taaaatagat gattccaaat ttcacagatt tccaaaagct
      421 tggcatgtta atcatgccac ttactataga tttgagatag ctgatattgt tgaaggaaat
      481 aaatgtttat atttagacgc agatgtattg gtatgtggag atataagaga attattttat
      541 atggaattaa ataataaagt tgccggagta gttacagatt cttgctcaag attatggaca
      601 aaattgtata ccaaagataa taaaacatca tcttatatag aattcgatcc actaatgtat
      661 tttaatgcgg gtgttatatt gatagattta aatcaatgga aaaaacatga tataaaaaat
      721 aaatgtattg atgcttttaa tatttatgat catgggggat tagctgatca aagttattta
      781 aacatagctc tcaaagagtt aacttataaa ctaccattaa attggaatct tatagttcca
      841 gaatatattt tacttgatgg atatgaaaga cattatgtag ttaattgcct agatgaaatt
      901 tcagaatata acttagccta tacaagaagc gaatttgaag aagccatgaa aaataaaaaa
      961 atagttcatt tttgtgccgc aaaaccttgg tggaatttat attataaaaa taataaagtc
     1021 gactttaatg aaagaaatgt ttggtgggaa atagccttaa atttagaaga attcaaggaa
     1081 gaattttatt ttttgaaaaa ttccttggat agtaaacatt taaatagaca acttaacacc
     1141 atagaatgga ttttaaaaaa tggtgataaa aattcatcaa atgttttata ttcatcttat
     1201 gatattgata atataaaaaa aatcaaaaat catctttctt ataaattagg aaatgctatt
     1261 gttttatcat ttaaatattg gtataaagga agattgctca aactaccatt tgagttagtg
     1321 tccatatata aaaaacacaa aaggacaaaa aggtagtttt tatgcaaact aaaatagt
//
LOCUS       DAZBIH010000155         1351 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.156, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000155 DAZBIH010000000
VERSION     DAZBIH010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1351)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1351)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1351
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.156"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            114..1178
                     /locus_tag="ACHFOB_001672"
     CDS             114..1178
                     /locus_tag="ACHFOB_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA];
                     GO_process: GO:0015074 - DNA integration [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HFN5800445.1"
                     /translation="MKYPLDCEENFEKSFLFWLAKYVKFKLNSLSNKELKNPQALAEV
                     NFTLTKGVKNIDELDALAKKARNAGLSGVNTYFNPLKKVFEYLNFYKLYSLKQIDEEL
                     IVEVLASITGALSDASKKNYRIAVINFFDFLDKQNEEDEKAHIFDINLKNWAGIAGSK
                     GVKLPEFMSEEELKKFLDAIENADFKNNTIRNKLIIKIIIFTGIRVSEAINIKMGDIS
                     EENDLYIIRIRAKGNKYRVVMIKKELIYDLLKNVSINYMSKDALLFVNKKGTPLTQSY
                     VSRIVEQLLFRAGIRKQKNGAHMLRHTFATLLYKKQKDLVLVQEALGHASLNTSRIYT
                     HFDNDKLKLAAQVAKELSDS"
     gene            1168..>1351
                     /locus_tag="ACHFOB_001673"
     CDS             1168..>1351
                     /locus_tag="ACHFOB_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional aminodeoxychorismate synthase
                     component I/aminotransferase"
                     /protein_id="HFN5800446.1"
                     /translation="MTLENYAVFGKYFYHDLKHTLKAFNHKESKKCFKFIEKYKNDFY
                     ILMLTDYELYRYFQDKN"
BASE COUNT          536 a          173 c          196 g          446 t
ORIGIN      
        1 tgccttgcat ataaaaacaa actttttcct aaaaaagctt ttttttacta agttaatact
       61 aaaatacctt ttctagttaa aaagctaaaa ttttagattt aggaaaagtt tttatgaaat
      121 accctttaga ttgtgaagaa aattttgaaa aatcattctt attttggtta gcaaaatatg
      181 taaaatttaa actcaactca ctatctaaca aagagttaaa aaatccacaa gctttagcag
      241 aagttaattt tactcttaca aaaggtgtaa aaaacattga tgaacttgat gctctagcaa
      301 aaaaagcaag aaatgctggt ttaagtggag ttaatactta ttttaacccc ttaaaaaaag
      361 tatttgaata tttaaatttt tacaagcttt attctttaaa acagattgat gaagaactca
      421 ttgtagaagt tttagcaagt ataacaggtg ctttatcaga tgcaagtaaa aaaaattacc
      481 gtattgctgt gattaatttt tttgattttt tagacaagca aaatgaagaa gatgaaaaag
      541 cacatatttt cgatattaat cttaaaaact gggcaggtat agcaggttct aaaggggtaa
      601 aattacctga atttatgagc gaagaagagc ttaaaaaatt tcttgatgct attgaaaatg
      661 cagattttaa aaacaatacc atacgcaata aacttattat taaaatcatc atttttacag
      721 gcatacgggt aagtgaagct atcaatatca aaatgggtga tattagcgaa gaaaacgatc
      781 tttatatcat aagaataaga gctaaaggca ataaatatcg tgttgtaatg ataaaaaaag
      841 aacttattta cgatttgctt aaaaatgtaa gtattaatta tatgagtaaa gacgccctac
      901 tttttgtcaa taaaaaaggc actccactga ctcaatctta tgtcagtcgc atagtagaac
      961 agcttttatt tcgtgcagga attcgcaaac aaaaaaatgg tgctcatatg ttgcgtcata
     1021 cttttgccac cctgctttat aaaaagcaaa aagatttagt tttagttcaa gaagctttag
     1081 ggcatgcaag tttaaatacc tcaagaattt acactcattt tgataatgat aaattaaaac
     1141 ttgccgcaca ggttgcaaag gaattaagtg actcttgaaa actatgctgt ttttggtaaa
     1201 tatttttacc atgatttaaa acacacttta aaagccttta accacaaaga aagtaaaaaa
     1261 tgctttaaat ttatagaaaa atataaaaat gatttttata ttttaatgct tactgattat
     1321 gaactatata gatattttca agataaaaat t
//
LOCUS       DAZBIH010000156         1330 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.157, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000156 DAZBIH010000000
VERSION     DAZBIH010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1330)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1330)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1330
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.157"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>1330
                     /locus_tag="ACHFOB_001674"
     CDS             <1..>1330
                     /locus_tag="ACHFOB_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="motility associated factor glycosyltransferase
                     family protein"
                     /protein_id="HFN5800447.1"
                     /translation="YQNPIKELEENLKLYQEQYTNYPFLFFYGLGNGILYKALLKNTL
                     HKRIIIIEKELDIIFITLNLIDFSEDLFKGRIIITHTLDYNNNIAELIFGLTEISLFL
                     KTYQINLHSPFYRIYQEDIKKINNINLQTIKYLTLKKGTDPLDAMVGIEQAIWNLPEM
                     FKHYSYKELLDKRKNLSKNAIIVSTGPSLTKQLSLLKQYANKAIIFCADSSYPILAKH
                     NIKPDYVLSLERIPLTSEFFNNDFGEFDKDILFILPGLTHPNSIKYLKKFKKDYMLVA
                     RHLPFALSLDLKEYGYIGGGMSVAHSAYELAILLKCENIILIGQDLAYSKEGKSHTDD
                     YINLALHEKDFERNKGHFTTIAYGGEGEVESSEVWTLFRKIFENYAINNQKYIKTYNC
                     TEGGARIKGTIEKPFAEICKEILTKDIKKPLKKLKKKTKKEQFDKMLKSYR"
BASE COUNT          547 a          183 c          181 g          419 t
ORIGIN      
        1 ttatcaaaat ccgataaaag aacttgaaga aaatttaaaa ctttatcaag aacaatatac
       61 taattatcct tttttatttt tttatggttt aggaaatgga attttatata aagcgttgtt
      121 aaaaaatacg ctccataaaa gaattattat catagaaaaa gaactagata ttatatttat
      181 cactttaaat ctaatagatt ttagcgaaga tttatttaaa ggacgcataa ttatcactca
      241 tacacttgat tacaataata atatagcaga gttaattttt ggattaacag aaatcagcct
      301 ttttttaaaa acttatcaaa ttaatttaca ttcacccttt tacagaattt atcaagaaga
      361 tattaaaaaa atcaacaata tcaatcttca gactataaaa tatcttacct taaaaaaagg
      421 tacagatcct ttggatgcta tggtaggcat agaacaagct atttggaatt taccagaaat
      481 gtttaaacac tatagctata aagaattatt agataaaaga aaaaatctca gcaaaaatgc
      541 tatcattgtc tcaacagggc ctagtttaac caaacaactg tctttgttaa aacaatatgc
      601 aaataaagct attatatttt gtgctgactc ttcttatcct atacttgcaa aacataatat
      661 caaacctgat tatgtattat ctttagaaag aatcccctta acttcagagt tttttaacaa
      721 tgactttggg gaatttgata aagacatttt atttattttg ccaggtttaa cccaccctaa
      781 ctcaatcaaa tatttaaaaa aatttaaaaa agactacatg ctagtggcta gacatctacc
      841 ctttgctctt tctttagatt taaaagaata tggatatata ggtggtggta tgagtgtagc
      901 tcatagtgct tacgaattgg caattttgtt aaaatgtgaa aacatcatct taataggaca
      961 agatttagct tatagcaaag aagggaaatc acacacggac gattatataa atttagcttt
     1021 acatgaaaaa gatttcgaac gtaataaagg tcactttacc actatagctt atggcggaga
     1081 aggagaggtt gaaagttctg aagtttggac tttatttaga aaaatatttg aaaattatgc
     1141 aatcaataac caaaaatata tcaaaaccta taattgcacc gaaggtggtg ctagaataaa
     1201 aggaaccata gaaaaacctt ttgcagaaat atgcaaagaa atactcacaa aagatataaa
     1261 aaagccttta aaaaagctaa agaaaaaaac aaaaaaagaa caatttgaca aaatgttaaa
     1321 aagttatcga
//
LOCUS       DAZBIH010000157         1323 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.158, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000157 DAZBIH010000000
VERSION     DAZBIH010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1323)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1323)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1323
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.158"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>1323
                     /locus_tag="ACHFOB_001675"
     CDS             <1..>1323
                     /locus_tag="ACHFOB_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="dynamin family protein"
                     /protein_id="HFN5800448.1"
                     /translation="VQSIDQKALFQNDFKELNTINLELQKLSFDENLKSRLQKTLEKF
                     QNLEFNIAITGVMNAGKSSLLNALLKEDFLGVSNIPETANLTVLSYGKSEEAKIYFWD
                     KKEWQNILESSHFNADLKEFIDKLDKSVNIEDFIKDKPLIQNIALCELKNFSSAKNKI
                     SALIKKIEIKSHLEFLKNNISIVDTPGLDDVVVQREIVTNEYLRESDFLIHLMNASQS
                     LTQKDADFLVHCLLNSRLSKFLIVLTKADLLSKKDLEEVIVYTKESLKSRLVDLDENL
                     VEKIDFLCVSAKMASDFYKGLASKESLQKSGMQEFENYLFNELYAGEKSKIALRAYKK
                     ELHLELKNILSEYEMQNRLIKENKQGVSEENQKLLLELQKQNTLLKEAQDEISNSIAK
                     LKNIDSGIDNLVLLLAKKLKERLIDEFKYLKNNAQKLNLSRILNIVDIT"
BASE COUNT          536 a          139 c          220 g          428 t
ORIGIN      
        1 agttcaaagt atagatcaaa aagctttatt tcaaaatgat tttaaagaat taaacaccat
       61 taatttagag cttcaaaagc taagttttga tgaaaattta aaatcaagac ttcaaaaaac
      121 tttggaaaaa tttcaaaatt tagagtttaa tatagccatc actggcgtga tgaatgcagg
      181 aaaatcaagt cttttaaatg ctcttttaaa agaagatttt ttaggggttt caaacatacc
      241 tgaaacagct aatttaacag tattaagcta tggtaagagt gaagaagcaa agatatattt
      301 ttgggataaa aaagaatggc aaaatatact tgaaagttcg cactttaatg cagatttaaa
      361 agaatttatt gataagctgg ataagagtgt aaatatagaa gattttatta aagataaacc
      421 tttgatacaa aatatcgcac tttgtgagct taaaaatttc agttctgcta aaaataaaat
      481 ttcagcttta attaaaaaaa tagaaattaa aagtcattta gaatttttaa aaaataatat
      541 ttctatagtt gatactccag ggcttgatga tgttgtagtt caaagagaaa ttgttacaaa
      601 tgagtatctt agagaaagtg attttttaat tcatttaatg aatgcttctc aaagcttgac
      661 tcaaaaagat gcagactttt tggtgcattg tcttttaaat tcaaggctga gtaagttttt
      721 aattgtttta actaaagcgg atttgttaag caaaaaggat ttagaagaag tcattgttta
      781 taccaaggaa agcttaaaat caagacttgt ggatttagat gaaaatttag tggaaaagat
      841 tgatttttta tgtgtgagcg ctaaaatggc aagtgatttt tataaaggtt tagcgtccaa
      901 ggaaagcttg caaaaaagtg gtatgcaaga atttgaaaac tatcttttta acgagcttta
      961 tgcaggagaa aaaagtaaga ttgccttaag agcttacaaa aaagaattgc atttagagct
     1021 taaaaatatt ctaagcgaat atgaaatgca aaatcgtctt attaaggaga ataaacaagg
     1081 tgtaagtgaa gaaaatcaaa agcttttact tgaacttcaa aagcaaaaca ccttattaaa
     1141 agaagcacaa gatgaaattt caaattccat tgcaaaactt aaaaatatag atagtggcat
     1201 agataatctt gttttacttt tggctaaaaa attaaaagaa cgcttgatag atgagtttaa
     1261 atatttgaaa aataatgcac aaaagcttaa tctttctcgt attttaaata tagttgatat
     1321 tac
//
LOCUS       DAZBIH010000158         1322 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.159, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000158 DAZBIH010000000
VERSION     DAZBIH010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1322)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1322)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1322
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.159"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            98..1279
                     /locus_tag="ACHFOB_001676"
     CDS             98..1279
                     /locus_tag="ACHFOB_001676"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800449.1"
                     /translation="MDFIKFLNHFQPISKSSQQASVYKSFKLNLKPKILNEKDENSSS
                     FQDQKTDVAQTMLQRLEDEKVFNQKVSDKVKKAERGMTTIYFRDPITNKLVRSALSST
                     AINKMGIEFDKEDMTKRLDGSYILSGKAENFVAGWYADIAYTRAYMASDRNNDGYLED
                     YELEDTKSGFVAQETNLGLFVQSYTQLNGSVDTLFGFEKDFREMRPDDTKDTDYAGRT
                     IGLELDKMIRKDGDFDGELSFSETGMQAVKTKAPNSGWTESVGILTLTKFDQTNTMEI
                     KDILDKLGKGVKYDDLSEDEKSLLKMQLSDKIFDEVEDKETGNKKLVFNLDKFKIFYE
                     GFVDLFKQRSAKMLGLKPEDATKLNYDNLGEIVNEMKQTYFDTNSTSYGKIADLIKIW
                     A"
BASE COUNT          525 a          132 c          235 g          430 t
ORIGIN      
        1 gtaatagagg ataaaattta aaatttttta agttaaaatt acataaaata tattagcaat
       61 atttttgaaa agatgtcgaa aatttgaagg catcaaaatg gattttataa aatttcttaa
      121 tcattttcaa cccatatcta aatcttctca gcaagctagt gtatataaat cttttaagtt
      181 gaatttaaaa ccaaagattc ttaatgaaaa agacgaaaat tcctcttcat ttcaagatca
      241 aaaaacagat gtagctcaaa ctatgcttca aagattagaa gatgaaaaag ttttcaatca
      301 aaaggtaagt gataaagtga aaaaagctga aaggggtatg actactatat attttagaga
      361 tcctattaca aataaactcg ttcgtagtgc tttaagttca acagctatca ataaaatggg
      421 gattgaattt gataaagaag atatgactaa aagacttgat ggatcatata tattaagtgg
      481 aaaagctgaa aatttcgtgg ctggatggta tgctgatata gcatatacta gagcttatat
      541 ggctagtgat agaaataatg atggatattt agaagattac gagcttgaag atacgaaaag
      601 tggttttgta gcacaggaaa caaatttagg actttttgtg caatcttata cacaattaaa
      661 tggtagtgta gatactctat ttggttttga aaaagatttt agagaaatgc gtccagatga
      721 taccaaagat acagattatg ctggtagaac tataggttta gagcttgata aaatgataag
      781 aaaagatgga gattttgatg gagagcttag ttttagcgaa actggcatgc aagcagtaaa
      841 aaccaaagct ccaaattctg gatggactga aagtgtaggt atattaactt taactaaatt
      901 tgatcaaact aatacaatgg aaattaaaga tatcttggat aaattaggta aaggtgtaaa
      961 atatgatgat ttaagtgaag atgaaaaatc tctacttaaa atgcaattat ctgataaaat
     1021 ttttgatgaa gttgaagata aagaaactgg taataaaaaa cttgttttta atctggataa
     1081 atttaaaatt ttctatgaag gttttgtgga tttattcaaa caaagaagtg caaaaatgct
     1141 aggtttaaaa cctgaagatg caactaaact taattatgac aatcttggtg aaattgtcaa
     1201 cgaaatgaag caaacttatt ttgatacaaa ttctacaagt tatggaaaaa tagctgattt
     1261 aattaaaatt tgggcttagt ttttataatt atcttgtaaa gtgtattgtt atttttattt
     1321 tg
//
LOCUS       DAZBIH010000159         1319 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.160, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000159 DAZBIH010000000
VERSION     DAZBIH010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1319)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1319)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1319
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.160"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(119..>1319)
                     /locus_tag="ACHFOB_001677"
     CDS             complement(119..>1319)
                     /locus_tag="ACHFOB_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019260289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HFN5800450.1"
                     /translation="KFNKIKRKLIVSGRKMLDFTLWSDCVLLQVYRNTSNHHTNFLKI
                     LNFTILMISLYAFMGFVFSKTINFILSLNSVSIIIASYIILLVFALMLVNVKKQLYQY
                     AVILIFMLCGAFTISMILFLSSEYISIFCFLIYFLGVLIFYLFFICKIKLFIFLVRFF
                     AYMIFIATIITKPQFINPFTGVFSSDKLYESQFEKSLNDLNASAIVNLASILQNDFNL
                     HLKDQNISFTELNSAKALIIANKEKLKEILSKVYNDKYVSDYKKVLNELENNTSNVKN
                     IIEEIDNKNNNSVVSAQLNKFLKLNFSQEIDILYAIKSNFSISEKLSPEQMALFDQKD
                     SQDKLKSVLALLKFKSSFEGILKIINQDEITENTIKSTGVLYGIILLLCIFSLQKTAR
                     KNSIVPS"
BASE COUNT          509 a          176 c          135 g          499 t
ORIGIN      
        1 tttctaaaac aatttctttt ttaattaaat ctatattttc cacagcattt atagtaaaaa
       61 ttccatattg tgctaatttt tcatcaaatt ctttcatttt aaccctttac ttaacctttc
      121 aacttggcac tatggaattt tttcgtgcag ttttttggag cgagaaaata caaagcaaaa
      181 ggataatgcc atataaaaca ccagtggatt ttatggtgtt ttctgtaatc tcgtcttgat
      241 ttataatctt taaaatccct tcaaaacttg atttaaattt caaaagagcc aagacacttt
      301 ttaatttatc ttgactgtct ttttgatcaa aaagagccat ttgctcaggt gatagttttt
      361 cagatataga aaaattactt tttatcgcat ataaaatatc tatttcttga ctaaaattta
      421 attttaaaaa tttattaagt tgagcagata caacgctatt gttgttttta ttgtctatct
      481 cttctatgat attttttaca tttgatgtgt tattttctag ctcatttaaa acctttttat
      541 aatcacttac atatttatca ttatacactt tagataaaat ttcttttaat ttttctttat
      601 ttgctattat caaagcttta gctgaattta actctgtaaa agaaatattt tgatctttta
      661 aatggagatt aaaatcattt tgcaatatgc ttgctagatt tacaatagca ctcgcattta
      721 aatcatttaa acttttttca aattgacttt cataaagctt atctgatgaa aatacacctg
      781 taaaaggatt tataaattgt ggttttgtta taatcgttgc aataaaaatc atataagcaa
      841 aaaatctcac aagaaaaata aataatttaa ttttacaaat aaaaaaaaga taaaaaatca
      901 atacgcctaa aaaataaatc aaaaagcaaa aaattgaaat atactctgat gataaaaaca
      961 atatcataga tattgtaaaa gcaccacaaa gcataaaaat caaaataacg gcatattgat
     1021 acaattgttt tttaacatta acaagcatta aagcaaatac aagcaaaata atatagcttg
     1081 ctataattat cgatactgaa ttaagggata atataaaatt tatggttttt gaaaatacaa
     1141 aacccataaa agcatacaat gaaatcatta aaattgtaaa atttaaaatt tttaagaaat
     1201 ttgtatggtg attgctagta ttcctataaa cttgtaacaa aacacaatca gaccacaaag
     1261 taaaatctag catctttctt ccggaaacta ttaattttct tttaatttta ttaaatttt
//
LOCUS       DAZBIH010000160         1313 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.161, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000160 DAZBIH010000000
VERSION     DAZBIH010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1313)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1313)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1313
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.161"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..122
                     /locus_tag="ACHFOB_001678"
     CDS             <1..122
                     /locus_tag="ACHFOB_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HFN5800451.1"
                     /translation="APNYYIIISKNGFSKEFDKICEQNLLLLDLNDFKILLEE"
     gene            126..1145
                     /gene="flgS"
                     /locus_tag="ACHFOB_001679"
     CDS             126..1145
                     /gene="flgS"
                     /locus_tag="ACHFOB_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fla regulon two-component system sensor
                     histidine kinase FlgS"
                     /protein_id="HFN5800452.1"
                     /translation="MNESILKSLDSNEKETLQKGLESLIEQTYVIENEYKTLNENYNS
                     LRAMVDEIIEVLPSALWILDKEKNIILQNQEALKNPKLLSIISLDKIRDELEFEGRFY
                     AVKIIAHNEKTIVSATDISDEKRNERLASMGSVAAHLAHEIRNPIGSISLLASTLFAR
                     SELKNKHIVLEIQKAIARVERIVNSTLLFTKGVHINALNFNLLELKEECESAINSYNF
                     TSQIDFEISFLDKQICADKALLGLVLQNLIYNAIDAIEESECEKPMIKILASCDNEKI
                     CIRVYDNGCEIKDEKLVFEAFKTTKLKGNGLGLSLSKEIINAHKGELSFQSDPKNFYF
                     TLPLV"
BASE COUNT          493 a          160 c          222 g          438 t
ORIGIN      
        1 tggctccaaa ttattacatt ataatctcaa aaaatggttt tagcaaggaa tttgataaaa
       61 tatgcgaaca gaatttgctt ttacttgatt tgaatgattt taagatttta ttagaggaat
      121 gataaatgaa tgaaagtatt ttaaaaagtt tagactcaaa tgaaaaagaa accctacaaa
      181 aaggcttaga aagtcttata gaacaaactt atgtaataga aaatgaatac aaaactttaa
      241 atgaaaacta taattcctta cgcgcaatgg ttgatgagat tatagaggta ttgcctagtg
      301 cactttggat tttagataaa gaaaaaaata ttattttaca aaatcaagaa gccttgaaaa
      361 atccaaaatt acttagtatc attagtcttg ataaaattcg cgatgagctt gaatttgaag
      421 gtaggtttta tgcggtaaaa atcatagcac ataatgaaaa aactatagtt tcagctacag
      481 atattagcga tgaaaaacgc aatgaaaggc ttgcaagcat gggtagtgta gcggctcatt
      541 tggcacatga gataagaaat cctattggat ctatatcttt gcttgcttca actctttttg
      601 ctcgtagtga gcttaaaaat aagcatatag ttcttgaaat ccaaaaggct attgctagag
      661 tagagcgtat cgtaaattca actttacttt ttactaaggg tgtgcacatc aatgctttaa
      721 attttaatct tttagagtta aaagaagagt gtgaaagtgc tattaactct tataatttca
      781 cttctcaaat agactttgaa atatcttttt tggataagca gatttgtgct gataaagctc
      841 ttcttggttt ggttttgcaa aatttgattt ataatgctat tgatgcgata gaagaaagcg
      901 aatgtgaaaa gcctatgatt aaaattttag caagttgtga taatgaaaaa atatgtatca
      961 gagtgtatga taatggttgt gaaataaaag atgagaaatt ggtttttgaa gcttttaaaa
     1021 caacaaaact taaaggcaat gggcttggct tgtctctttc taaagaaatc ataaacgccc
     1081 ataagggaga gttaagtttt caaagcgatc ctaagaattt ttattttacc ttacctttgg
     1141 tgtgataaat attttctttt caccccaaaa cgaaacagat tttgcttata ttattttaat
     1201 atatttagat tgaaggcaaa aaaatctaaa tcaaaggaat taatatgagt atctttagca
     1261 tcaatgataa ctcaaattat aattctatac tttcacaaag taaagctaat aaa
//
LOCUS       DAZBIH010000161         1305 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.162, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000161 DAZBIH010000000
VERSION     DAZBIH010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1305)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1305)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1305
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.162"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..703
                     /locus_tag="ACHFOB_001680"
     CDS             <1..703
                     /locus_tag="ACHFOB_001680"
                     /inference="COORDINATES: protein motif:HMM:NF020084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FIST N-terminal domain-containing protein"
                     /protein_id="HFN5800453.1"
                     /translation="LKNSFNGVKLMFFNFKNKSSTKKEESKKVLEALYLQENELEEKL
                     KKINIKPKLIIGFASYQLNLAIIGNKIQNSINEQCDIILSSATDLLCNLDSNSNIENS
                     PYKQNIQGISLMLFSEDMIENLCTNKIKLFSNIKDYTERKKLIEKEVLSINVPFEAHC
                     INTLHYLIYDGLSQSESSLLELLYKHNPYPCALVGGGSSGNMDFSGTFIFYNGEILKN
                     QALSLHIQFKPKISF"
     gene            708..1079
                     /locus_tag="ACHFOB_001681"
     CDS             708..1079
                     /locus_tag="ACHFOB_001681"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800454.1"
                     /translation="MKSQNFNPQSNITFTILDASLYDKTIHEFIDKKTSQSINAVEAL
                     CNYFNCTFEELKNKIQEYTFALKIGEDYLISPMEINPDKTLFSYCDIESAQELCLLKK
                     TNFIEAIKKIMKNFLLINQNH"
BASE COUNT          532 a          169 c          172 g          432 t
ORIGIN      
        1 attaaaaaat agttttaatg gagttaaatt gatgtttttt aattttaaaa ataaaagctc
       61 aacaaaaaaa gaagaaagta aaaaagtttt agaagctcta tatcttcaag aaaatgaact
      121 tgaagaaaaa ttaaaaaaaa taaatatcaa gccaaaatta atcataggct ttgcgtcgta
      181 tcaacttaat ctagcgatca taggaaataa gattcaaaat tctataaatg aacaatgtga
      241 tatcatctta agcagtgcta ctgatttatt atgcaacctt gattctaact caaacattga
      301 aaacagtcct tataaacaaa atatccaagg aataagtttg atgcttttta gtgaagatat
      361 gatagaaaat ctttgcacaa acaaaatcaa gctttttagc aatataaaag attatacaga
      421 aagaaaaaaa ctgatagaaa aagaagtttt atctataaat gtaccttttg aagcacactg
      481 cataaatact ttgcattatt taatttatga tggtttaagt caaagcgaaa gttctctttt
      541 agaactttta tacaaacaca atccctatcc ttgtgcttta gtagggggtg gatctagcgg
      601 aaacatggac tttagcggaa catttatatt ttataatgga gaaatattaa aaaatcaagc
      661 tttaagctta catattcaat ttaaacctaa aatatcgttt tgatttaatg aagtctcaaa
      721 attttaatcc tcaaagcaac attaccttta ccatacttga tgcaagttta tatgataaaa
      781 ccatacatga atttattgat aaaaaaacct ctcaatccat caacgcggtt gaagctttat
      841 gtaattattt taactgcact tttgaagaac ttaaaaataa aatacaagaa tatacttttg
      901 ctttaaaaat tggagaagac tatcttattt cccctatgga aatcaaccca gataaaacat
      961 tatttagtta ttgtgatata gaaagcgctc aagaattatg cttgcttaaa aaaacaaatt
     1021 ttattgaagc tataaaaaag attatgaaaa attttctctt aataaaccaa aatcactagg
     1081 agcaattttt aacgattgta tcttaagaag gcttcacaac aaagaacatt taaatcaaat
     1141 ccattttaat gattttccta tagttggttt ttctagtttt ggagaaattt atggagtggg
     1201 aattgcaaaa agtttagtgg caatattttt ttatgaagtt gaaaatttta atgatttcaa
     1261 acctagatat ttaaaaactt tcatacaaaa atacagcgat tttaa
//
LOCUS       DAZBIH010000162         1162 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.163, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000162 DAZBIH010000000
VERSION     DAZBIH010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1162)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1162)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1162
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.163"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..732
                     /locus_tag="ACHFOB_001682"
     CDS             <1..732
                     /locus_tag="ACHFOB_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4261 domain-containing protein"
                     /protein_id="HFN5800455.1"
                     /translation="LNHNFTSFVLLDEVDFDFLELKSILEDKFNIKITDENFTKEGVI
                     FSYENMLITLNLIKNPIPNHEAEYYANFNFMWKDALEQTKKHKAHLLIAVLSQDQSKL
                     EQAKMFTKIAALCLDNKHALGFYTGAVVLEPSFYIENAKMLDDNRLPVYNWIYVSVYP
                     SENGVNAYTYGLRNFDKLELEVCDLNIEEKELFFCIYDIVLHILTYDINLKDKDILKF
                     EDGKEIKFIKSQGISVENESLKIIF"
     gene            797..>1162
                     /locus_tag="ACHFOB_001683"
     CDS             797..>1162
                     /locus_tag="ACHFOB_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY-like domain-containing protein"
                     /protein_id="HFN5800456.1"
                     /translation="MKAKLTLLALLGATVLLAKDMVVPASELPNNAKEFISKNFKTAQ
                     IGLVKKDIDSYDVILNDGTEIDFMINGDWKEVDGKYKALPHTILPSVMKKVSATQPNA
                     QILEIDKEINGYKFKFNNNM"
BASE COUNT          441 a          125 c          190 g          406 t
ORIGIN      
        1 ttaaatcaca attttacctc ttttgttctt cttgacgaag ttgattttga ttttttggag
       61 ttaaaaagca ttttagaaga taaatttaat ataaaaataa ctgatgaaaa ttttaccaaa
      121 gagggagtga ttttttcata tgaaaatatg ttgattactc taaatttgat taaaaatcct
      181 atacctaatc acgaagcaga atactatgca aattttaatt ttatgtggaa agatgcctta
      241 gagcaaacta aaaaacataa agctcatctt cttatagcgg tgctaagtca agatcaaagc
      301 aaattagaac aagctaaaat gtttacgaaa attgcagctt tatgtttgga taataaacat
      361 gctttaggtt tttatacagg tgcagttgtt ttagagccca gtttttatat agaaaatgca
      421 aaaatgttag atgataatcg cttgccggta tataattgga tatatgttag tgtttatcct
      481 agtgaaaatg gagttaatgc ttatacttat gggcttagaa attttgataa attagaactt
      541 gaagtttgtg atttaaacat agaagaaaaa gaacttttct tttgtattta tgatattgtt
      601 ttgcatattt taacttatga tattaatcta aaagataaag atattttaaa atttgaagat
      661 ggaaaagaaa taaaatttat aaaaagtcaa ggtataagtg ttgagaatga aagcttgaaa
      721 attatttttt aagtttcaca ttcacttcac agttttgagt taaactttcg ccaaccaaga
      781 caaaaaagga gaaactatga aagcaaaatt aactttactt gctttgttgg gtgctacggt
      841 gcttttagct aaagatatgg ttgttcctgc tagcgaactt ccaaataatg ccaaagaatt
      901 tatttctaaa aattttaaaa ccgctcaaat tggtttggtg aaaaaagata tagattctta
      961 tgatgtaatt ttaaatgatg gaactgaaat tgattttatg atcaatggag attggaaaga
     1021 agttgatgga aaatacaagg ctttaccaca tactatttta cctagtgtta tgaaaaaagt
     1081 aagtgcaact caaccaaatg ctcaaattct tgaaatagat aaagaaatta atggttataa
     1141 atttaagttt aataataaca tg
//
LOCUS       DAZBIH010000163         1159 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.164, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000163 DAZBIH010000000
VERSION     DAZBIH010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1159)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.164"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(10..252)
                     /locus_tag="ACHFOB_001684"
     CDS             complement(10..252)
                     /locus_tag="ACHFOB_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800457.1"
                     /translation="MNQNNNKTLKNELEDLQYELSIVLEAMLLYAGVKRDKLENAIEA
                     YIDNIDNVLENSNKEGVDEILEVVEFLKNKYKDFFQ"
     gene            complement(236..>1159)
                     /locus_tag="ACHFOB_001685"
     CDS             complement(236..>1159)
                     /locus_tag="ACHFOB_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HFN5800458.1"
                     /translation="FNSIIGDIEKDENFGKAIILITDLNLNLNQCEEFEKICKEKNIK
                     IFLLDHHQSGEECAQKYSWYLLDSKRCATKIVYDFFSKICTPVLELSKFVDVVNAVDI
                     WLSEDENFELGKVFLGLIANAKEINRVMFKESQIDYMFFLLDKAWKFIGKENANILLD
                     NATHFIKKDYFARKNDDTLSNLISCFVVEKLSELKENFSIEYEGHKGILTSNIGNTSV
                     IGNDFLVKNPDYDFFIDVSSRKTLSFRANGKIDVSLMAKNLVGGGGHKNASGGLFATF
                     KDGANYNHIKAQIIDLIKSKELKKENNESKQ"
BASE COUNT          390 a          199 c          119 g          451 t
ORIGIN      
        1 tacacttttt cattgaaaaa aatctttgta tttatttttt agaaattcca ccacttctaa
       61 aatttcatca accccttctt tgttggaatt ttcgagcaca ttatctatat tatcaatata
      121 agcttctatt gcattttcta atttgtccct tttaactcca gcgtataaaa gcatagcttc
      181 taaaactatg ctaagctcat attgtaaatc ttctagttca ttttttaagg ttttattatt
      241 gttttgattc attgttttcc tttttaagtt ctttgctttt aattaaatca ataatttgag
      301 ccttaatatg attataattt gctccatctt taaatgtcgc aaaaagtcca ccactagcat
      361 ttttatgtcc accaccacct actaaatttt tagccattaa acttacatct atttttccat
      421 ttgcacgaaa acttaaggtt tttctagaac taacatcaat aaaaaagtca taatcaggat
      481 tttttactaa aaaatcattt ccaataacag aagtattgcc tatatttgaa gttaagatgc
      541 ctttatggcc ttcatattct atactgaaat tttcttttag ctcgcttagt ttttcaacta
      601 caaaacaaga aattaaatta gaaagagtat catcattttt tctggcaaaa taatcctttt
      661 ttataaaatg agtagcatta tcgagtaaaa tattcgcatt ttcttttcct ataaatttcc
      721 aagccttatc aagcaagaaa aacatataat cgatttgaga ttctttaaac atcacgcgat
      781 ttatttcttt tgcattggca atcaagccta aaaaaacctt tccaagttca aaattttcat
      841 cctcgcttag ccaaatatca acagcattaa ccacatcaac aaattttgaa agctctaaaa
      901 caggggtgca gattttagag aaaaaatcat aaacgatttt agttgcacat cttttagaat
      961 caagtaaata ccaagaatat ttttgagcac attcttcgcc actttgatga tgatcaagaa
     1021 gaaaaatttt aatatttttc tctttgcaaa ttttttcaaa ttcttcgcat tgatttaaat
     1081 ttaaatttaa atctgttatt agaataatag cttttccgaa attttcatct ttttctatat
     1141 cgcctataat agagttaaa
//
LOCUS       DAZBIH010000164         1020 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.165, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000164 DAZBIH010000000
VERSION     DAZBIH010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1020)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.165"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            7..1020
                     /locus_tag="ACHFOB_001686"
                     /pseudo
     CDS             7..1020
                     /locus_tag="ACHFOB_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002935330.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="beta-1,4-N-acetylgalactosaminyltransferase"
BASE COUNT          438 a          124 c          120 g          338 t
ORIGIN      
        1 ttttatatgc tatttcaatc atactttgtg aaaataattt gcttattcat tccttttaga
       61 aaaattagac ataaaataaa aaaaacattt ttactaaaaa acatacaacg agataaaatc
      121 gattcttatc taccaaaaaa attcttatac aaattaataa atacaacaat gaagatttaa
      181 ttaaacttaa taaagctatt acaggagggg ggcataaagg atattttaat tatgatgaaa
      241 aatctaaaga tccaaaatct cctttgaatc cttgggcttt tatacgagta aaaaatgaag
      301 ttattacctt aaaagcttct cttgaaagta tattgcctgc tatccaaaga ggtgttatag
      361 gatataatga ttgtaccgat ggaagtgaag aaataattct agaattttgc aaacaatatc
      421 cttcatttat accaataaaa tatccttatg aaattcaaat tcaaaaccca aaatcagaag
      481 aaaataaact ctatagctat tataattatg ttgcaagttt tataccaaaa gatgagtggc
      541 ttataaaaat agatgtggat catatctatg atgctaaaaa actttataaa agcttctata
      601 taccaaaaaa caaatatgat gtagttagtt attcaagggt tgatattcac tattttaatg
      661 ataatttttt tctttgtaaa gataataatg gcaatatatt gaaagaacca ggagattgct
      721 tgcttatcaa taattataac ttaaaatgga aagaagtatt aattgacaga atcaataaca
      781 attggaaaaa agcaacaaaa caaagttttt cttcaaatat acactcttta gagcaattaa
      841 agtataaaca caggatatta tttcacactg aattaaataa ttatcatttt ccttttttaa
      901 aaaaacatag agctcaagat atttataaat ataattggat aagtattgaa gaatttaaaa
      961 aattctattt acaaaatatt aatcataaaa tagaaccttc tatgatttca aaagaaactc
//
LOCUS       DAZBIH010000165          994 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.166, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000165 DAZBIH010000000
VERSION     DAZBIH010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 994)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.166"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>994
                     /locus_tag="ACHFOB_001687"
     CDS             <1..>994
                     /locus_tag="ACHFOB_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002856242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HFN5800459.1"
                     /translation="NVEEYLRECLDSVVNQTYKNLQVVLVNDGSTDENSLNIAKEYTL
                     KDERFILFDKENGGQSTARNVGIEFFSKEYHFKNITQELKENSLVEFKLSNEDNPYNI
                     YKIYKSSNFFKNKDELLNFRAPDIDYIIFLDSDDYWELNCIEECVPRMDGVEVVWFDF
                     EIFLDGIDGKNVWNYSDHKTDLEYLRYTENQYTNFNDIIARITKEYIFGFSSATYCMI
                     DFALIELNTLRFINGIYAEDHHFSIILFSLSKMIYIIKSKKYKYRLRQNSSSNHDGNF
                     NKTSFPLYLDYILKDFNHNYFMAKKYYIYASWIITCNTLLDFLKSKNRCFMDTII"
BASE COUNT          395 a          100 c          148 g          351 t
ORIGIN      
        1 aacgtagaag aatatttgag agaatgttta gatagtgttg tcaatcaaac ttataaaaat
       61 ttacaagttg tacttgtaaa tgatggtagc acagatgaaa actcactcaa tatagccaaa
      121 gaatatactt taaaagatga aagatttata ctttttgata aggagaatgg gggacaaagc
      181 actgctagaa atgtaggtat agaattcttt agcaaagaat atcattttaa aaacatcacc
      241 caagaattaa aagaaaactc tttagtagaa tttaaactaa gcaatgaaga taatccttat
      301 aatatttata aaatatataa aagctcaaat ttctttaaaa acaaagatga acttttaaat
      361 tttagagccc ctgatattga ttatattatc tttttagatt ctgatgatta ttgggaatta
      421 aattgtatag aagaatgtgt tcctagaatg gatggggttg aagtggtctg gtttgatttt
      481 gaaatattct tagacggtat agatggaaaa aatgtttgga attatagtga tcataaaaca
      541 gatttagaat atttaagata tacagaaaat caatatacaa atttcaatga tatcatagct
      601 cgaattacta aagaatatat ctttggtttt tcatctgcta cttattgcat gatagatttt
      661 gctttaattg aactaaatac tttaaggttt atcaatggaa tatatgcgga agatcatcat
      721 tttagcataa tattattttc cttatctaaa atgatctata ttattaaaag taaaaaatat
      781 aaatatcgat tacgtcaaaa tagcagttca aatcatgatg ggaattttaa taaaactagt
      841 tttcctttat acttagatta tatattaaaa gattttaatc ataattattt tatggcgaaa
      901 aaatattata tttatgcgag ctggattatt acttgcaaca cgttactaga ttttttaaaa
      961 agcaaaaaca gatgttttat ggatacaata atat
//
LOCUS       DAZBIH010000166          946 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.167, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000166 DAZBIH010000000
VERSION     DAZBIH010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.167"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            35..445
                     /gene="perR"
                     /locus_tag="ACHFOB_001688"
     CDS             35..445
                     /gene="perR"
                     /locus_tag="ACHFOB_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HFN5800460.1"
                     /translation="MELLQMLKKHELKATPQRLCVLKILKRHEHPNIDELYIEIKKEY
                     PSISLATVYKNLNTLQEQGLVVEINVLNQKTCYDIYEEEHIHVVCTKCGGIEDLSFKD
                     AKLYEYQEHLEKKIGNLVNHLSVCAYVDNCKKCH"
     gene            491..>946
                     /locus_tag="ACHFOB_001689"
     CDS             491..>946
                     /locus_tag="ACHFOB_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800461.1"
                     /translation="MVYEIQKNFLLSDCTLLENLKKDNIPFRNSKFETFYTQITSNHS
                     VKFQSFCNEFYKITKFNNSILEQNQEEKISKKKFEKARKKIIGKSIKKERFEFKFCSL
                     KSYIDIYEEPKICILKIFFPTLDSSNEFKIPKDFKIQKELHHDLNSKHIV"
BASE COUNT          396 a          103 c          120 g          327 t
ORIGIN      
        1 ttatttttac ttaaaaaagc aaggaataaa taaaatggaa ttactacaaa tgcttaaaaa
       61 acatgagtta aaagctactc cgcaaagact atgtgtttta aaaattttaa aaagacatga
      121 gcatcctaat attgatgaat tatatataga aattaaaaaa gaataccctt caatctcttt
      181 agcgacggtt tataaaaatc ttaatacttt acaagaacaa ggtttagttg ttgaaatcaa
      241 tgttttaaat caaaaaactt gttacgatat ctatgaagaa gaacatattc atgttgtttg
      301 caccaaatgt ggtggtatag aggatttaag ttttaaagat gctaagcttt atgaatatca
      361 agagcattta gaaaaaaaga taggcaatct cgtcaatcat ctgtctgttt gtgcttatgt
      421 tgataattgc aaaaagtgtc attaagcaaa ataaggttaa aataacccat atattttaag
      481 ggttatttta atggtttatg aaattcaaaa aaacttttta ctatctgatt gcactctttt
      541 agagaattta aaaaaagata atataccttt tcgaaattct aaatttgaaa ctttttatac
      601 tcaaataact tcaaatcata gtgttaaatt tcaaagtttt tgcaatgaat tttataaaat
      661 tacaaaattt aataattcaa ttttagaaca gaatcaagaa gagaaaattt ctaaaaaaaa
      721 atttgaaaaa gctcgaaaaa agattatagg aaagagcatt aaaaaagaac gcttcgaatt
      781 taaattttgc tctttaaaaa gttatattga tatttatgaa gagcctaaaa tttgtatttt
      841 aaaaatattt tttccaactt tggatagttc caatgaattt aaaattccta aagattttaa
      901 aattcaaaaa gaattacatc atgatttaaa ttctaaacat atcgtt
//
LOCUS       DAZBIH010000167          936 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.168, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000167 DAZBIH010000000
VERSION     DAZBIH010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.168"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..429
                     /locus_tag="ACHFOB_001690"
     CDS             <1..429
                     /locus_tag="ACHFOB_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase family protein"
                     /protein_id="HFN5800462.1"
                     /translation="QEMIIEFAKYEDMLDFLQCTKEKLEHSLLKNKFARAFLLKENEK
                     TIGYMIYFYTFSSFWGSGGIYLEDIYIREDFRKKGYGKAVFKFLGEICKKENLKRLDW
                     VCLNDNILGINFYESLNAKHLKQWRNYRLSGENLEKLCDL"
     gene            426..>936
                     /locus_tag="ACHFOB_001691"
     CDS             426..>936
                     /locus_tag="ACHFOB_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase family protein"
                     /protein_id="HFN5800463.1"
                     /translation="MIRSLYYLKAMGFNFVDTHINHFEQVQNFQELKQLVSSCTLCQF
                     SKTRKFSLMEPKIKNAKLLILDVFGQKSENESGILLNSKKGEKLKRYIYQILGLCDED
                     FYFSYLFKCFCNGKFDDFSLQSCLPFFWNELKLIQPAFLLCLGEYTFKSLGFKDYHIL
                     KGEVFAYKNF"
BASE COUNT          344 a          102 c          149 g          341 t
ORIGIN      
        1 caagagatga tcatagaatt tgcaaaatac gaagatatgt tagattttct tcaatgtacg
       61 aaagaaaaac tggaacattc tttactaaaa aataaatttg ctcgtgcttt tttgttaaaa
      121 gaaaatgaaa aaactatagg ctatatgatt tatttttata ctttttcgtc tttttggggc
      181 agcggtggaa tttaccttga agatatttat atacgagaag attttcgtaa aaaaggttat
      241 ggaaaagctg tttttaaatt tttaggagaa atttgcaaaa aagaaaattt aaaaagactc
      301 gactgggttt gcttaaatga taatatttta ggtattaatt tttatgaaag tttaaacgct
      361 aaacatctta aacaatggag aaattatcgt ctaagtggag aaaatttaga aaaattgtgt
      421 gatttatgat aagaagtctt tattatttaa aagctatggg gtttaacttt gttgacacac
      481 atataaacca ctttgaacaa gtacaaaatt ttcaagaatt aaaacaactt gtttcatctt
      541 gcaccttatg ccaattttcc aaaacaagaa aatttagtct tatggagcct aagataaaaa
      601 atgccaaatt gctaattctt gatgtttttg ggcaaaagag tgaaaatgaa agtggaattt
      661 tacttaattc aaaaaaaggt gaaaaattaa aacgctatat ttatcaaatt ttagggcttt
      721 gcgatgaaga tttttatttt tcttatctat ttaaatgttt ttgtaatgga aaatttgatg
      781 atttttcgct acaatcttgc ttaccatttt tctggaacga actaaaactg attcaacctg
      841 cttttttgct ttgtctagga gaatacacat ttaaaagctt gggatttaaa gattatcaca
      901 ttttaaaagg tgaagttttt gcttataaaa attttt
//
LOCUS       DAZBIH010000168          900 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.169, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000168 DAZBIH010000000
VERSION     DAZBIH010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.169"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..323
                     /locus_tag="ACHFOB_001692"
     CDS             <1..323
                     /locus_tag="ACHFOB_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN5800464.1"
                     /translation="ANTTDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSIQNQV
                     TSTINNITVTQVNVKAAESQIRDVDFASESANYSKANILAQSGSYAMAQANSSQQNVL
                     RLLQ"
     gene            497..>900
                     /locus_tag="ACHFOB_001693"
     CDS             497..>900
                     /locus_tag="ACHFOB_001693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344726.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN5800465.1"
                     /translation="MGFRINTNIGALNAHANSVVNSNELDKSLSRLSSGLRINSAADD
                     ASGMAIADSLRSQAATLGQAINNGNDAIGILQTADKAMDEQLKILDTIKTKATQAAQD
                     GQSLKTRTMLQADINRLMEELDNIANTTSFNG"
BASE COUNT          329 a          151 c          151 g          269 t
ORIGIN      
        1 ctgctaatac aactgatgag actgcaggtg taaccactct taaaggtgca atggctgtaa
       61 tggatatagc tgaaactgct ataaccaatc ttgatcaaat cagagctgat ataggttcta
      121 tacaaaatca agttacatca actataaata acattactgt aactcaagtt aatgttaaag
      181 cagcagaatc gcaaatcaga gatgtagact ttgcaagtga gagtgcaaac tactctaaag
      241 ctaacatctt agcccaaagt ggttcttatg caatggctca agcaaattct agtcagcaaa
      301 atgttttaag attattacaa tagttaaatc ttaaaatcac tttacattct tttaagaatg
      361 ctgcaattta tacaaatcca agcctagttt aaatactagg ctttttattt ataagcttta
      421 aaatttttaa tcaaattaaa acttggaaca cttcttgctt taatcttttc gatgcaatat
      481 tttgaaagga tttaaaatgg gttttaggat aaacaccaac atcggtgcat taaatgcaca
      541 tgcaaattca gttgttaact ctaatgaact tgacaagtct ttaagtagac taagttcagg
      601 tcttagaatt aactcagcag cagatgatgc ttcagggatg gcgatagcag attctttgcg
      661 ttcacaagca gcaactttag gtcaagctat aaacaatggt aatgatgcca taggtatttt
      721 gcaaactgca gataaagcta tggatgagca attaaaaatt cttgatacta tcaagactaa
      781 agctactcaa gcagctcaag atggacaaag tttaaaaaca agaactatgc ttcaagcaga
      841 tattaaccgc ttgatggaag agcttgataa tatcgcaaat acaacttcat ttaacggcaa
//
LOCUS       DAZBIH010000169          898 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.170, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000169 DAZBIH010000000
VERSION     DAZBIH010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 898)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.170"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            90..845
                     /locus_tag="ACHFOB_001694"
     CDS             90..845
                     /locus_tag="ACHFOB_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="basic amino acid ABC transporter
                     substrate-binding protein"
                     /protein_id="HFN5800466.1"
                     /translation="MKKILSIALVALVGLFLGACSDSKNKESNASVELKVGTAPNYKP
                     FNYKENSKLTGFDTDLVEEIAKKNGIKIVWVETNFDGLIPALKAGKIDMIASAMSATD
                     ERRQSVDFTKPYYMSKNLYLKLKSNNLLQTKNDLEGKKIGVQLGTLQENTAKAIKNAQ
                     VQSNKDLNIAVLALKNKKIDAIIADEDTAKGFLAENPDLISFYQEMDGGEGFSFAFDK
                     NKQKELVKIFDKGIDEVKTNGFYNTLMKKYELE"
BASE COUNT          370 a          105 c          148 g          275 t
ORIGIN      
        1 tataactttt ctaaaaattg atccagactt aattaaatat aaatttaaaa taagtataat
       61 tttaaaacat tttatatcaa aggaaaaaaa tgaaaaaaat attaagcatt gccctagttg
      121 ctttagttgg tttattttta ggtgcttgta gtgattctaa aaataaagaa tcaaatgcaa
      181 gtgtagaatt aaaggttgga actgctccaa attataaacc ttttaattat aaagaaaact
      241 caaaacttac aggttttgat actgatttgg ttgaagagat cgccaaaaaa aatggtatta
      301 aaattgtttg ggttgaaacc aatttcgatg ggttaatacc tgctttaaaa gccggtaaaa
      361 tcgatatgat tgcctcggct atgagtgcaa cggatgaaag aagacagagt gttgatttta
      421 ccaaacctta ctatatgagt aaaaatcttt atcttaaact aaaaagtaac aatttacttc
      481 aaacaaaaaa tgatttagaa ggtaaaaaaa taggagttca actaggaact ttacaagaaa
      541 atactgcaaa agctatcaaa aatgcacaag tgcaaagcaa taaagattta aatattgctg
      601 ttttagcact aaaaaacaag aaaattgatg ctattatcgc agatgaagat actgctaaag
      661 gttttttagc tgaaaatcca gacttgataa gtttttacca agaaatggat ggtggagaag
      721 gctttagctt tgcttttgat aaaaacaaac aaaaagaatt ggtaaaaatt tttgacaaag
      781 gtatagacga ggtaaaaacc aatggatttt acaatacttt gatgaaaaaa tatgaactag
      841 agtaagcgtg aaaattcacg cttatacaac ttaaatcttc gttgtgtttt gtaaaata
//
LOCUS       DAZBIH010000170          837 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.171, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000170 DAZBIH010000000
VERSION     DAZBIH010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.171"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>837
                     /locus_tag="ACHFOB_001695"
     CDS             <1..>837
                     /locus_tag="ACHFOB_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional chorismate-binding protein/class IV
                     aminotransferase"
                     /protein_id="HFN5800467.1"
                     /translation="EAISKGRVYQINLTQNFKFHSKMNSFELFKLLLSRQDTEFKAFI
                     KDETREILSFSPELFFKTKKRKIFTKPMKGTIKRDKDPIKDEENKIFLQNDTKNLSEN
                     VMICDLLRNDLSKIITKKSLKTKLFEIQSHPTLHQMTSSVQGKLKKNISLYQIFKALF
                     PCGSITGAPKLESIKFIEELEQRDRGIYCGTIGLIHKNKNKFSVAIRTLEKQDEIYTY
                     STGSGLVWDSKFKDEFEELKLKSAILNPCDFHLFETMYFKNSQILFLKEHLLRLINSA
                     LKF"
BASE COUNT          338 a          121 c          106 g          272 t
ORIGIN      
        1 gaggcaatct ccaaaggaag agtttatcaa atcaacctta ctcaaaattt taaatttcat
       61 agcaaaatga attcttttga actttttaaa cttttgcttt ctagacaaga tactgaattt
      121 aaagctttta taaaagatga aacaagagaa attttatcct tttctcctga acttttcttc
      181 aaaaccaaaa aaagaaaaat atttacaaaa cctatgaaag gcacaattaa gcgtgataaa
      241 gatcctataa aagatgaaga aaataaaatt ttcttgcaaa atgatacaaa aaatctgagt
      301 gaaaatgtta tgatttgtga tcttttacgc aacgatcttt caaaaatcat cacaaaaaaa
      361 agcttaaaaa caaaactttt tgaaattcaa agtcacccta ctttacatca aatgacttca
      421 agcgtacaag gaaaacttaa aaaaaatatt tctttatatc aaatttttaa agctctcttt
      481 ccttgtggtt ctattacagg tgctccaaag cttgaaagta ttaaatttat tgaagaatta
      541 gaacaaagag atcgtggtat ttactgcgga actataggtt taatacacaa aaataaaaat
      601 aaatttagcg tagccatacg caccttagaa aaacaagatg aaatttatac ttatagcacc
      661 ggtagtggct tggtttggga ctcaaaattc aaagatgaat ttgaagaatt aaaacttaaa
      721 agcgcgatct taaatccttg tgattttcat ctttttgaaa ccatgtattt taaaaattct
      781 caaattttat ttttaaaaga acatttatta aggcttataa attcagctct taaattt
//
LOCUS       DAZBIH010000171          834 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.172, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000171 DAZBIH010000000
VERSION     DAZBIH010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 834)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.172"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            8..322
                     /locus_tag="ACHFOB_001696"
     CDS             8..322
                     /locus_tag="ACHFOB_001696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2325 domain-containing protein"
                     /protein_id="HFN5800468.1"
                     /translation="MSVLVIGADEITPIRAVLHDLGAKKIEHWDARNENRVNRKPIPC
                     DTECIVMLTSFLNHNTMKKIKNEAKKRKIPLVCAKRSVSCVYCEYCKIFNLNKEFSCY
                     KG"
     gene            325..>834
                     /locus_tag="ACHFOB_001697"
     CDS             325..>834
                     /locus_tag="ACHFOB_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800469.1"
                     /translation="MLFGFDDKQEFIPQIYRYLNNQELMLTFLTQYNASVDSALKIPL
                     LYAKNTKSLKMIFGNFLHNIMHVSFGKIQNINIKLNTYAFYFQKRKSLIFNTKISKNV
                     DLLRLLRIYLYGICFDAQILFSSYVYDKVSFQNNGKNIDQDGDLIIIDKKFAILPLCK
                     EINTHNLEIE"
BASE COUNT          314 a           90 c          128 g          302 t
ORIGIN      
        1 agaatttatg tcagttttgg ttattggtgc agatgaaatc actcctatta gagctgtttt
       61 acatgattta ggtgctaaaa aaatagaaca ctgggatgca cgtaatgaaa atagagttaa
      121 tcgcaagccg attccttgtg atacagaatg tatagtaatg ttaacaagct ttttaaatca
      181 taatactatg aaaaaaatca aaaatgaagc taaaaagcgt aaaattccat tagtttgtgc
      241 aaaaagaagt gtaagttgtg tgtattgtga atattgtaaa atttttaatc ttaataaaga
      301 attttcttgc tataaaggtt aaagatgtta tttggatttg atgataagca agaatttata
      361 ccgcaaattt atcgctattt aaacaatcaa gagcttatgt tgactttttt aactcaatat
      421 aatgcgagcg ttgatagtgc tctaaaaatt cctcttttat atgcaaaaaa taccaagagt
      481 ttaaaaatga tatttggaaa ttttttgcat aatataatgc atgtttcatt tggtaagatt
      541 caaaatataa atatcaagct taatacatac gctttttact ttcaaaaaag aaaaagcttg
      601 atttttaata ctaaaatatc taagaatgtc gatcttttaa gacttttaag aatttatctt
      661 tatggcattt gttttgatgc gcaaatttta tttagctcct atgtttatga taaggtttct
      721 tttcaaaata atggaaaaaa tatagatcaa gatggtgatc ttattataat agataagaaa
      781 tttgcaattt tgccactttg caaagagatt aatacacata atttagaaat tgaa
//
LOCUS       DAZBIH010000172          819 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.173, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000172 DAZBIH010000000
VERSION     DAZBIH010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.173"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            145..279
                     /gene="rpmH"
                     /locus_tag="ACHFOB_001698"
     CDS             145..279
                     /gene="rpmH"
                     /locus_tag="ACHFOB_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HFN5800470.1"
                     /translation="MKRTYQPHGTPRKRTHGFRVRMKTKNGRKVINARRAKGRKRLAV
                     "
     gene            276..602
                     /gene="rnpA"
                     /locus_tag="ACHFOB_001699"
     CDS             276..602
                     /gene="rnpA"
                     /locus_tag="ACHFOB_001699"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000049 - tRNA binding [Evidence IEA];
                     GO_function: GO:0004526 - ribonuclease P activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HFN5800471.1"
                     /translation="MKNFDKFSTNEEFSSVYKVGKKWHCEGVIIFYLNSYEKKIAVVA
                     SKKVGKAVVRNRSKRILRALFAKFERYLQDGKYIFIAKNEITELSFSRLEKNLKWGLK
                     KLECFK"
     gene            599..>819
                     /gene="yidD"
                     /locus_tag="ACHFOB_001700"
     CDS             599..>819
                     /gene="yidD"
                     /locus_tag="ACHFOB_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HFN5800472.1"
                     /translation="MICLKILRFYQKFLSPLKPAACRYYPSCSEYALWQFQKKNFFLA
                     FFSTFFRILRCNPFFKGGFDYPRVSKNFYP"
BASE COUNT          303 a          101 c          131 g          284 t
ORIGIN      
        1 ttaaattctg acatttttaa ccttttaaaa ataatttcaa aatttatcaa aagaatttaa
       61 aaattactct taatcaaaag caatttataa gtaagattaa gataaaatac aagtttattt
      121 tataattttt taaggaaaaa tcaaatgaaa agaacttatc agccacatgg cactccaaga
      181 aaacgtactc atggtttccg tgttcgtatg aaaactaaaa atggtcgcaa ggtgatcaat
      241 gcaagacgcg ctaaaggtag aaaaagactt gctgtgtgaa aaattttgat aaatttagca
      301 caaacgagga attttcatct gtatataaag taggtaaaaa atggcattgc gaaggtgtga
      361 tcatttttta cctgaatagt tatgaaaaaa aaatagcagt tgttgctagt aaaaaagttg
      421 gaaaagcagt ggttagaaat cgttcaaaac gaattttaag ggctttgttt gctaagtttg
      481 aaagatatct tcaagatggc aaatatattt ttatagctaa aaatgaaatc actgaacttt
      541 ctttttctag gttagaaaaa aatctaaaat ggggattgaa aaaactagaa tgtttcaaat
      601 gatatgccta aaaatactcc gtttttatca gaaattctta agccctttaa aacccgctgc
      661 ttgtaggtat tatcctagtt gttctgagta tgcgctttgg cagtttcaaa aaaagaattt
      721 ttttctagct tttttttcta ctttttttag aattttaaga tgtaaccctt tttttaaagg
      781 gggttttgat tatcctagag tttctaaaaa tttttatcc
//
LOCUS       DAZBIH010000173          788 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.174, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000173 DAZBIH010000000
VERSION     DAZBIH010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 788)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.174"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>788
                     /locus_tag="ACHFOB_001701"
     CDS             <1..>788
                     /locus_tag="ACHFOB_001701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0001216 - DNA-binding transcription
                     activator activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HFN5800473.1"
                     /translation="IKDMEIFLDLLNTQSPTHTANNFSITQPNVSIVIKNLENKFDGI
                     LFERLGKKLLPTPKALELGKNWLKIIQAYYQSLEKLNDESMLLGEIKIASTQSISEHF
                     LAPILFDFKAEFKNIEIRSQTQNSKECLNLLKNGNIEFAIIEAELDPALVEYENLEIN
                     FWQDDELIVATSDKKLNEKEFYIDELLEQKWILREVGSGLRDKFLNEIGASSKKLNIF
                     LELDRMAAIKELVLQKKAISIFSKKSIEKELKNSTLYEIKLKNI"
BASE COUNT          338 a          105 c          110 g          235 t
ORIGIN      
        1 atcaaagata tggaaatatt tttagatctt ttaaacactc aaagtccaac tcatacagcc
       61 aacaattttt ccataaccca acctaatgtt tcaatagtaa ttaaaaattt agaaaataaa
      121 tttgatggca ttttatttga aagacttgga aaaaaactct tacctacacc aaaagcttta
      181 gaactaggaa aaaattggtt aaaaattata caagcctact accaaagctt agaaaaatta
      241 aacgacgaaa gtatgctctt aggggaaata aaaatagcct caactcaaag catttctgaa
      301 cattttttag ctcctatttt atttgatttt aaggcagaat ttaaaaacat agaaattcgc
      361 tctcaaacgc agaattcaaa agaatgttta aatttactaa aaaacggaaa tatagaattt
      421 gcaatcattg aagcagaact tgatccagct ttagtggagt atgaaaattt agaaataaat
      481 ttttggcaag atgatgaact tatagtagct acaagtgata aaaaactcaa tgaaaaagaa
      541 ttttatatcg atgaactttt ggaacaaaag tggattttaa gagaagtagg ctcaggctta
      601 agggataaat ttttaaacga aattggtgca agctcaaaaa aacttaatat ttttcttgaa
      661 cttgatagaa tggctgcgat taaagaactt gttttacaaa aaaaagcaat ctctattttt
      721 tccaaaaaaa gcatagaaaa agaattaaaa aattcaacac tttatgaaat taaattaaaa
      781 aatatcga
//
LOCUS       DAZBIH010000174          767 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.175, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000174 DAZBIH010000000
VERSION     DAZBIH010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.175"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>767
                     /locus_tag="ACHFOB_001702"
     CDS             <1..>767
                     /locus_tag="ACHFOB_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002872157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4917 family protein"
                     /protein_id="HFN5800474.1"
                     /translation="KILENTSKILKIYTQDERLCEQLSNDSEKLKNFLVDIITNNHPN
                     KIQNQKKLNSTAQFIENYQKIFTLNYDLLLYWVIHKIMQNRKDFKDGFGGNDGEYVVF
                     DESKKDITCFYLHGALHIFDNGNKIIKKTYSRTKKPLKEQITEELNNNRYPVFVSEGT
                     SEQKKAKIIHNAYLNHCYKSLSYIDGDLIVFGTMLKSNDEHIQDAILKSKVKNIYFGV
                     SSLEKGKNDLNSFIEKNNNLEKNKKQIFFYDYKSVKI"
BASE COUNT          355 a           67 c           94 g          251 t
ORIGIN      
        1 aaaatcttag aaaatacttc taaaatttta aaaatttata ctcaagatga aagattatgt
       61 gagcaattat cgaacgattc tgaaaaatta aaaaattttt tagttgatat tattacaaac
      121 aatcatccaa ataaaataca aaatcaaaaa aaattaaact caacagctca atttatagaa
      181 aattatcaaa aaatatttac attaaattat gatttattat tatattgggt tattcataaa
      241 ataatgcaaa atagaaaaga ttttaaagat ggttttggtg gtaatgatgg agaatatgtt
      301 gtatttgatg aaagtaaaaa agatataact tgtttttatt tgcatggtgc tttacatatt
      361 tttgataatg gtaataaaat aattaaaaaa acttattcaa gaacaaaaaa gcccttaaaa
      421 gaacaaatta cagaagaact taacaataat agatatccag tttttgtatc ggaaggcaca
      481 tcagaacaga aaaaagcaaa aattattcac aacgcatatc taaaccattg ctataaaagt
      541 ttatcttata tagatggaga tttaattgtt tttggaacaa tgttaaaatc aaacgatgaa
      601 catatacaag atgctatatt aaaaagtaaa gttaaaaata tatattttgg tgtatcaagt
      661 ttagaaaaag gtaaaaatga cttaaatagt tttattgaaa aaaataataa tttagaaaaa
      721 aataaaaagc aaattttctt ttacgattat aaaagtgtaa aaatttg
//
LOCUS       DAZBIH010000175          757 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.176, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000175 DAZBIH010000000
VERSION     DAZBIH010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 757)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.176"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..575
                     /locus_tag="ACHFOB_001703"
     CDS             <1..575
                     /locus_tag="ACHFOB_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800475.1"
                     /translation="EKLNDFAYEKKPNKDFKIQDVKLVQFSQENKDCLELLIEAGQVR
                     ILNSYNSCQKLSKDESFQKFLNEDFLKLYKNNGYLINENLQNLKNTMQDIMIYYKLRY
                     SFSKDVKDMSKNKNLDILNIDEKDGGTLLYKINNQACVGIELTRHDSRMAMKIYGIEN
                     LDKECKLFIQSPSFKDLSYTKKDFKWYYLE"
     gene            complement(553..703)
                     /locus_tag="ACHFOB_001704"
                     /pseudo
     CDS             complement(553..703)
                     /locus_tag="ACHFOB_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344278.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          316 a           82 c           98 g          261 t
ORIGIN      
        1 atgaaaaatt aaatgatttt gcttatgaaa aaaaaccaaa taaagatttt aagattcaag
       61 acgttaaatt agtgcaattt tcacaagaaa ataaagattg ccttgaactt ttaatagaag
      121 ctggtcaagt tagaatttta aatagctata attcttgtca aaaattatct aaagatgaaa
      181 gttttcaaaa atttcttaat gaagattttt taaaacttta taaaaataat ggatacttga
      241 ttaatgaaaa tttacaaaat ttgaaaaata ccatgcagga tattatgata tattataaac
      301 tccgatattc ttttagtaaa gatgtaaaag atatgagtaa aaataagaat ttggatattt
      361 taaatataga tgaaaaagac ggtggtactt tgctttacaa aatcaacaat caagcttgcg
      421 ttggaataga acttacaaga catgactcaa gaatggctat gaaaatatac ggaatagaaa
      481 atttggataa agagtgcaaa ctatttatcc aatcgccttc ttttaaagat ctttcctaca
      541 caaaaaaaga ttttaagtgg tattatttag aataaataaa tgctttaatt tttaaataaa
      601 aatttttaaa aatcgcgctt aaagcaaaag tatcttgcct tccaagattt tgaaaaacac
      661 agttgtctaa gtcttttttt tcttgaatgc ttaaattttt cattaaccta acctttaaaa
      721 atattgcaag attttattat agcgaaaaaa ctttatt
//
LOCUS       DAZBIH010000176          666 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.177, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000176 DAZBIH010000000
VERSION     DAZBIH010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.177"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>666
                     /gene="ung"
                     /locus_tag="ACHFOB_001705"
     CDS             <1..>666
                     /gene="ung"
                     /locus_tag="ACHFOB_001705"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0016799 - hydrolase activity, hydrolyzing
                     N-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HFN5800476.1"
                     /translation="EITINIDKIKINDDWKEFLRDEFQKKYFLEIKKQYLNAINQNII
                     IYPPANLIFNAFNLCPLKEIKIIILGQDPYHQPNQAMGLSFSVPKNVKIPPSLNNIFK
                     ELQNDLNITPAKSGDLSSWAKQGVLLLNSILSVEANKAASHSSWGWQEFSDAIIHKLS
                     NEKSGLVFMLWGNYAKSKEILIDNTKHLILKAAHPSPLARTGFLGCKHFSKANEFLKK
                     VGKI"
BASE COUNT          265 a           90 c          102 g          209 t
ORIGIN      
        1 gaaattacaa taaacataga taagattaaa ataaatgatg actggaaaga atttttaaga
       61 gacgaatttc aaaaaaaata ttttctagaa atcaaaaaac aatacctaaa tgcgattaat
      121 caaaatataa ttatttatcc acctgcaaat ttaatcttta atgcttttaa tttatgtcct
      181 ttaaaagaaa ttaaaattat tatcctagga caagatcctt atcatcaacc aaatcaagca
      241 atggggctta gtttttcggt tccaaaaaat gtaaaaatcc caccaagtct taataatatt
      301 tttaaagaat tgcaaaatga tttaaacatc actccagcaa aaagcggaga tttaagctct
      361 tgggcaaaac aaggagtttt gctcttaaat tctattctta gcgttgaagc aaataaagca
      421 gctagtcata gttcgtgggg ttggcaagaa tttagtgatg ctataataca taaattaagt
      481 aatgaaaaat caggacttgt ttttatgctt tggggaaatt acgcaaaaag caaggagatt
      541 ttgattgata atactaagca tttgatttta aaagcagccc acccaagccc tttagctaga
      601 acaggatttt taggttgtaa gcatttttca aaggctaatg aatttttaaa aaaagttggt
      661 aaaatt
//
LOCUS       DAZBIH010000177          616 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.178, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000177 DAZBIH010000000
VERSION     DAZBIH010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 616)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.178"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>616
                     /locus_tag="ACHFOB_001706"
     CDS             <1..>616
                     /locus_tag="ACHFOB_001706"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800477.1"
                     /translation="LIGGHGTGEKAFQEMLSRCNVKILEKNIWYDNGLDRYKAFYGNL
                     KIKNNYIACIPILECNFYQYDKYLHMINKHVPAICLVRDPIKIMTSVYNYKILKNKDN
                     LTFSNLNCTDHLFDNYYYAVTKNKTIASKKEIENGINNIKNINKHIRFTYIARTHLKN
                     LKNISHVYYIDVSEISNNKAYETLYRLSKIIGFNMPNDDKLINNL"
BASE COUNT          264 a           66 c           78 g          208 t
ORIGIN      
        1 ttttaatagg aggccatgga acaggagaga aagcttttca agaaatgctt tccagatgta
       61 atgttaaaat tttagaaaaa aatatttggt atgataatgg actggataga tataaagctt
      121 tttatggtaa cttaaagata aaaaataatt atattgcatg catacctatc ttagaatgta
      181 atttttatca atatgataaa tacttgcata tgataaataa acatgttcca gcaatatgtt
      241 tagtaagaga tcctattaaa ataatgacca gtgtttataa ttataaaatc ttaaaaaata
      301 aagataatct aacttttagt aatttaaatt gcactgatca tctatttgat aattattatt
      361 acgctgtaac aaaaaacaaa accatcgcct ctaagaaaga aattgaaaat ggaataaata
      421 atattaaaaa tattaataaa cacataagat ttacatatat agccagaacc catttaaaaa
      481 atttaaaaaa tatttctcat gtttattata ttgatgtgtc tgaaatttcc aacaataagg
      541 catatgaaac tttatatagg ttaagtaaaa ttatcggatt taatatgcct aatgatgaca
      601 agctaattaa taatct
//
LOCUS       DAZBIH010000178          615 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.179, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000178 DAZBIH010000000
VERSION     DAZBIH010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.179"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            2..>615
                     /locus_tag="ACHFOB_001707"
     CDS             2..>615
                     /locus_tag="ACHFOB_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011990357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF234 domain-containing protein"
                     /protein_id="HFN5800478.1"
                     /translation="MSLSKLFDFYSVFEGFEKLNILNFEDDVFTNIERILLDDYLKIK
                     SYFALDETSSYALTLLAKNNRKRFSINRKIQHFKALSTLKYLLETGIIKLEYSKEAKK
                     IKDKRQKIKKELRSYVVQDKIIFSNHFTRFFFYFLKPNEKLILQNRYKEVLECIKEKF
                     ELYQSFCFEQLSRELLEKKFNINGVQSYWDKNLELDLYYQDENL"
BASE COUNT          234 a           68 c           91 g          222 t
ORIGIN      
        1 tttgtcttta agtaagcttt ttgattttta tagtgtgttt gaaggttttg aaaaattaaa
       61 cattttaaat tttgaagacg atgtatttac aaatatagag cgaattttgc ttgatgatta
      121 tctaaaaatt aaaagttatt tcgccttgga tgaaacaagt tcttatgctc ttactttgct
      181 agctaaaaac aatcgcaagc gtttttctat caatagaaaa attcagcatt ttaaagcttt
      241 atctacactt aaatatcttt tagaaacagg tataataaaa cttgagtata gcaaggaagc
      301 taaaaaaata aaagataaaa gacaaaaaat caaaaaagaa ctaagatctt atgttgtcca
      361 agataagatt atatttagca accattttac tcgtttcttt ttttattttt taaagcccaa
      421 tgaaaagctt attttgcaaa atcgttataa agaagtttta gaatgcatta aggaaaaatt
      481 tgagctttat caaagttttt gttttgaaca actttctaga gaattgcttg agaaaaaatt
      541 caatatcaat ggagtgcaaa gctactggga taagaattta gaacttgatc tttattatca
      601 agatgaaaat ttgtg
//
LOCUS       DAZBIH010000179          611 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.180, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000179 DAZBIH010000000
VERSION     DAZBIH010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 611)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.180"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..380
                     /locus_tag="ACHFOB_001708"
     CDS             <1..380
                     /locus_tag="ACHFOB_001708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800479.1"
                     /translation="KNFIIQEEISKLKQDKQKLLTNIQDLNFTLSNKISSTQQQFHIL
                     STITKEINLDKNKAIILNQIISWLNSNELKITNLEFKQTKIILSFIDENHFKRALENL
                     NSAFKILDKNEETLNIILEVIHE"
     gene            373..>611
                     /locus_tag="ACHFOB_001709"
     CDS             373..>611
                     /locus_tag="ACHFOB_001709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002859998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800480.1"
                     /translation="MNKIEVFLQNLNPREKFLFISFICLCALFLAFKIHDHFLEDIFQ
                     KTLVEHNYLALNEAKIENSHLKEIETKLTKQIKTE"
BASE COUNT          276 a           87 c           54 g          194 t
ORIGIN      
        1 ataaaaattt tatcatacaa gaagaaattt ctaaactaaa acaagataag caaaaattat
       61 taacaaacat acaagattta aactttactc tttctaataa aatatcatct acacaacaac
      121 aatttcatat tttatccacc ataacaaaag aaatcaattt agacaaaaat aaagcaatca
      181 ttctaaatca aatcatatca tggcttaact ccaatgaact taaaatcaca aatcttgaat
      241 ttaaacaaac aaaaatcatt ctttctttta tcgatgaaaa ccactttaaa agagcattag
      301 aaaatctaaa ttctgctttt aaaattcttg ataaaaatga agaaacattg aatatcatat
      361 tagaagtcat acatgaataa aatagaagta tttttgcaga atttaaatcc tagggaaaaa
      421 tttcttttta tttcttttat ctgtctttgt gctttgtttt tagcttttaa aattcacgat
      481 cactttttgg aagatatttt tcaaaaaaca ttagtagaac ataattacct tgcattaaat
      541 gaagcaaaaa tagaaaattc acatcttaaa gaaatagaaa caaagctaac aaaacagata
      601 aaaacagagg a
//
LOCUS       DAZBIH010000180          610 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.181, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000180 DAZBIH010000000
VERSION     DAZBIH010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.181"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>610)
                     /locus_tag="ACHFOB_001710"
     CDS             complement(<1..>610)
                     /locus_tag="ACHFOB_001710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002853525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800481.1"
                     /translation="CDDVELNIKRTSKLEYRISYDDEKEIKAIVFIIGGFGANVNISF
                     LDFDREYIAKNFDVVAVHVFYHCFCQRRSDVEKYSAFTMFTKDDVSNLSQALLEIGVN
                     INVNLENAQQCYELLNQNITTLKSQRKLAQNYQAKFTSTFIPPNGDYQNYGIMAALDH
                     INALKDLVKRFPKLADLPKIYGGGSYGGYLSLLIAKIAPWYV"
BASE COUNT          208 a          107 c           79 g          216 t
ORIGIN      
        1 tccacatacc aaggagctat ttttgctatg agtaaagata ggtatcctcc ataagacccc
       61 cccccataaa tttttggtaa atctgcaagt tttggaaaac gtttcactaa atcttttaaa
      121 gcattaatat gatcaagtgc tgccataata ccatagtttt gatagtctcc attaggtggg
      181 ataaaagttg aggtgaattt cgcttgataa ttttgcgcta gttttctttg tgattttaaa
      241 gtagtaatat tctgattaag taattcgtaa cattgttgtg cgttctcaag attaacattg
      301 atattaacac ctatttccaa taaagcctga gataaatttg acacatcatc ttttgtaaac
      361 attgtaaaag cactatattt ctcaacatct gaacgtcttt gacaaaaaca atgataaaaa
      421 acatgcactg ctacaacatc aaaattttta gcaatatatt ctctatcaaa gtctaaaaaa
      481 gaaatattta cattggctcc aaagccacct attataaaaa ctatagcttt aatctctttt
      541 tcatcatcat aacttatgcg gtattcaagt ttactagttc tttttatatt taattctaca
      601 tcatcacaag
//
LOCUS       DAZBIH010000181          601 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.182, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000181 DAZBIH010000000
VERSION     DAZBIH010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.182"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..340
                     /locus_tag="ACHFOB_001711"
     CDS             <1..340
                     /locus_tag="ACHFOB_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF5416 family protein"
                     /protein_id="HFN5800482.1"
                     /translation="VTIKKHEKLEIFKNLSQEDQEISFVKIEILNYDSNEDSLIFNLD
                     IFPSGMSYKYGILKGSMHIILQGKTSSTMLFPFLKSMIYKNKSENSSEKIFTLMINQK
                     KHYKLIANLS"
     gene            complement(343..549)
                     /locus_tag="ACHFOB_001712"
     CDS             complement(343..549)
                     /locus_tag="ACHFOB_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800483.1"
                     /translation="MEFLAFIFLIIIFLFVVFIIVTRYEKKIKLLNQNIQNMKEDIAD
                     LKETTQKNRSLIEKNRSNIENIIK"
BASE COUNT          230 a           61 c           70 g          240 t
ORIGIN      
        1 tgttactatc aaaaaacatg aaaaacttga aatttttaaa aatttatctc aagaagatca
       61 agaaattagc tttgttaaaa ttgaaatttt aaattatgat agtaatgaag atagtttaat
      121 ttttaatctt gatatatttc caagcggtat gagctataag tacggaattt taaaaggctc
      181 tatgcatatt attttacaag gtaaaacttc tagtacgatg ctttttccgt ttttaaaaag
      241 tatgatttat aaaaataaaa gcgaaaattc aagtgaaaaa atttttactt taatgataaa
      301 tcagaaaaaa cactataagc ttatcgcaaa tctttcttag ttttatttta ttatattttc
      361 tatattagag cgattttttt caattaaaga gcgatttttt tgagttgttt ctttaagatc
      421 ggctatatct tctttcatat tttgtatgtt ttggttgagt aattttatct ttttttcata
      481 gcgagtaacg atgataaaga ctacaaataa aaatataata atcaaaaaaa taaatgctaa
      541 aaattccata tttttccttt ttaaaactag attttgaaat atatcattta aatacttcaa
      601 a
//
LOCUS       DAZBIH010000182          563 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.183, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000182 DAZBIH010000000
VERSION     DAZBIH010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.183"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(20..105)
                     /locus_tag="ACHFOB_001713"
     tRNA            complement(20..105)
                     /locus_tag="ACHFOB_001713"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(69..71),aa:Leu,seq:gag)
     gene            complement(142..480)
                     /locus_tag="ACHFOB_001714"
     CDS             complement(142..480)
                     /locus_tag="ACHFOB_001714"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HFN5800484.1"
                     /translation="MKKVLFLLLACAAVAFAAETNAPVEQEAINVWIKAFSVLAAGLG
                     LGVAALGGAIGMGNTAAATIAGTARNPGLGPKLMTTMFIALAMIEAQVIYALVIALIA
                     LYANPFIVLQ"
BASE COUNT          188 a          120 c           95 g          160 t
ORIGIN      
        1 atgtagttag tagtataaat ggtgcggtta gcgagatttg aactcgcaca cgcggagcgc
       61 accaccccct caagatggcg tgtctaccaa ttccaccata accgcataga aaaaagccca
      121 aaaaaagggc tttaataagt tttattgtaa aactataaaa ggatttgcat aaagtgctat
      181 tagcgcgata acaagagcat agataacttg tgcttcaatc atcgctaaag cgataaacat
      241 agttgtcatt aattttggcc caagaccagg gtttctagct gttcctgcaa ttgttgccgc
      301 tgcagtatta cccataccga tagcaccacc aagtgctgca acaccaagac ctaagcctgc
      361 tgcaagaact gaaaatgctt taatccatac attaatagct tcttgctcta ctggagcatt
      421 agtttcagct gcaaaagcta ctgctgcaca tgctaataat aaaaaaagaa cttttttcat
      481 tatcttaacc tttctataaa aaaaattttt tcaattttta aatcagttcg gcttgcgtat
      541 ccctacttaa gacttaaaaa taa
//
LOCUS       DAZBIH010000183          554 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.184, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000183 DAZBIH010000000
VERSION     DAZBIH010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 554)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.184"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..200
                     /locus_tag="ACHFOB_001715"
     CDS             <1..200
                     /locus_tag="ACHFOB_001715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002869391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF115 domain-containing protein"
                     /protein_id="HFN5800485.1"
                     /translation="EESLIAPIYTQSVHNESQRQNKILSWIYANESLIETIIDLIESQ
                     NTRLKKAIIPLQDELEKRSLI"
     gene            complement(232..>554)
                     /locus_tag="ACHFOB_001716"
     CDS             complement(232..>554)
                     /locus_tag="ACHFOB_001716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0071973 - bacterial-type
                     flagellum-dependent cell motility [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN5800486.1"
                     /translation="ANTTDETAGVTTLKGAMAVMDIAETAITNLDQIRADIGSVQNQL
                     QVTINNITVTQVNVKAAESTIRDVDFASESANFSKYNILAQSGSYAMSQANAVQQNVL
                     KLLQ"
BASE COUNT          193 a           87 c           86 g          188 t
ORIGIN      
        1 atgaagaaag tttaattgct cctatttata cccaaagtgt tcataatgaa agtcaaagac
       61 aaaataaaat tttatcttgg atttatgcta acgaatcctt aattgaaact ataatagatc
      121 ttatagaaag tcaaaataca agattaaaaa aagctattat tcccttacag gatgagctag
      181 aaaaaagaag cttaatctaa aactaaagag caaaattgct ctttagaaag attattgtaa
      241 tagttttaaa acattttgct gtacagcgtt agcttgactc atagcatatg agcctgattg
      301 tgcaagaatg ttatatttag aaaaattcgc actctcactt gcaaagtcta catctcttat
      361 ggttgattcg gctgctttaa catttacctg agttacagta atattgttta tagtaacttg
      421 aagttgattt tgtacagaac caatatctgc tctgatttga tctaaatttg ttatagcagt
      481 ttctgctata tccataaccg ccattgcacc tttaagagtg gttacacctg cagtctcatc
      541 agttgtatta gcag
//
LOCUS       DAZBIH010000184          542 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.185, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000184 DAZBIH010000000
VERSION     DAZBIH010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 542)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.185"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            complement(<1..>542)
                     /locus_tag="ACHFOB_001717"
     CDS             complement(<1..>542)
                     /locus_tag="ACHFOB_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="FlaA; structural flagella protein; in Helicobacter
                     the flagella are composed of flagellin A and flagellin B;
                     the amounts of each seem to be controlled by environmental
                     conditions; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flagellin"
                     /protein_id="HFN5800487.1"
                     /translation="DTTGVQASKDENGKLVLTSADGRGIKITGDIGVGSGILANQKEN
                     YGRLSLVKNDGRDINISGTNLSAIGMGRTDMISQSSVSLRESKGQISAANADAMGFNS
                     YKGGGKLVLSSAVSSISAFMSAQGSGFSRGSGFSVGSGKNLSVGLSQGIQIISSAASM
                     SNTYVVSSGSGFSSGSGNSQ"
BASE COUNT          181 a          126 c           72 g          163 t
ORIGIN      
        1 ttgagaatta cctgagccag aagaaaaacc tgagccagaa gaaacaacat aagtattgct
       61 cattgaagcc gcacttgaaa taatttgtat tccttgactc aatccaacag ataaattttt
      121 accactaccc acagaaaatc ctgaacctct agaaaatcct gaaccttgtg cactcataaa
      181 tgcagaaatt gaacttacag ctgagcttaa aactaacttt cctccgcctt tataagaatt
      241 aaaccccata gcatcggcat tagctgctga aatttgacct tttgattctc ttaaagacac
      301 tgaagattga gaaatcatat ctgttctacc catacctata gcactaagat tggttccact
      361 aatattaata tctctaccat catttttaac taaagataat cgcccatagt tttctttttg
      421 atttgccaaa ataccagaac caacacctat atctccagta attttaatac ccctgccatc
      481 agccgatgta agaacaagct tgccgttttc atctttagaa gcttgaactc ctgtggtatc
      541 tt
//
LOCUS       DAZBIH010000185          535 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.186, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000185 DAZBIH010000000
VERSION     DAZBIH010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 535)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.186"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>535
                     /locus_tag="ACHFOB_001718"
     CDS             <1..>535
                     /locus_tag="ACHFOB_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="3-deoxy-D-manno-octulosonic acid transferase"
                     /protein_id="HFN5800488.1"
                     /translation="VKIFKNIKANLEIKNNKIYTKPKEKLIIFASTHKDEEELLLDHF
                     KLEENEKLIIAPRHPERFKEVENLLLNKGLEFEKFSSLKDENKKFAKKILLLDALGEL
                     VNFYAISDVVVLGGSFIEGIGGHNPIEVAYFDNVLISGKFIHNQKALFEEVENVYFCE
                     NLKDLNDKIHYLNLKVKI"
BASE COUNT          212 a           55 c           85 g          183 t
ORIGIN      
        1 tgttaaaatt tttaaaaata ttaaggcaaa tttagaaatt aaaaataata aaatttatac
       61 caagcccaaa gaaaaactta tcatttttgc cagtactcat aaggacgaag aagagctttt
      121 gcttgatcat tttaaactag aagaaaatga aaaactcatt atcgccccac gacaccctga
      181 gcgttttaaa gaagttgaaa atttgctttt aaacaaaggt ttggaatttg aaaaatttag
      241 ttctttaaaa gatgaaaata agaaatttgc taaaaaaatt ttgcttttag atgctttagg
      301 agagcttgta aatttttatg caatttctga tgttgttgtg cttggaggtt ctttcataga
      361 aggcatagga ggacacaatc ctatagaagt ggcatatttt gacaatgtat taatcagtgg
      421 gaaatttatt cataatcaaa aggctttatt tgaagaagta gaaaatgtat atttttgcga
      481 aaatttaaaa gatttaaatg ataaaattca ttatttaaat ttaaaagtta aaatt
//
LOCUS       DAZBIH010000186          505 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.187, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000186 DAZBIH010000000
VERSION     DAZBIH010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.187"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            98..310
                     /locus_tag="ACHFOB_001719"
     CDS             98..310
                     /locus_tag="ACHFOB_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002866842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800489.1"
                     /translation="MILVTPCGVMDTTNFGKSEVNKRTIDFSLKFQEKKEKVEAKAEK
                     EEANKDNSNSTNTDTNKKDKLLDISA"
BASE COUNT          245 a           64 c           61 g          135 t
ORIGIN      
        1 tatacgattt ataatataat caaaaattac aacttaagaa aaaaatgaaa aaaatatctt
       61 aagtttagta aacattgtaa actaagaggt taatgaaatg atactggtaa caccttgtgg
      121 cgttatggat accacaaatt ttggcaaaag tgaagtaaat aagcgaacta tagacttttc
      181 tttaaaattt caagaaaaaa aagaaaaagt agaagctaaa gctgagaaag aagaagcaaa
      241 taaagacaat agcaattcta caaatacaga taccaacaaa aaagataaac ttttggatat
      301 atctgcttaa tctaaaatat gctataacca tctccttgaa gaatacacaa taaatgattt
      361 tttgattttt attaagcttt taaaacatca aaaaaggaaa aattaaaaat acaaaaacaa
      421 tatcccaaag tgcatagctt agaagaaaac cttgcgatac ttaaaaacaa cccatattaa
      481 atcacaaaaa taagatatat ttaaa
//
LOCUS       DAZBIH010000187          489 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.188, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000187 DAZBIH010000000
VERSION     DAZBIH010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.188"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>489
                     /gene="pgpA"
                     /locus_tag="ACHFOB_001720"
     CDS             <1..>489
                     /gene="pgpA"
                     /locus_tag="ACHFOB_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HFN5800490.1"
                     /translation="QKLFLTFFYSGSIKKASGTFGTIAALIPAFFILKYLGINTLFLL
                     SILIFVASIRVIDDYEKKTGIHDDKHIVIDEVAGVFLACAIAASVENSIVNFVLAFVL
                     FRFFDITKPSIIGKIDKKVKGGLGVMLDDMLAGLFAGLLSAVIYGFLLKFNLVFWDIN
                     LK"
BASE COUNT          145 a           54 c           90 g          200 t
ORIGIN      
        1 tgcaaaaatt atttttaact tttttttatt caggttctat aaaaaaggca agtgggactt
       61 ttggtactat cgctgcttta atacctgctt tttttatact taaatatctt gggattaata
      121 ctttgttttt actaagcatt ttaatttttg ttgcaagtat tcgtgttata gatgattatg
      181 aaaaaaaaac aggaattcac gatgacaaac acatagttat cgatgaagtt gctggggttt
      241 ttcttgcttg tgctattgca gcaagtgttg aaaactcgat agtcaatttt gttttggctt
      301 ttgttttatt tagattcttt gacattacaa aaccttctat tattggcaag atagataaaa
      361 aagtcaaagg cggactaggt gtaatgcttg atgatatgct agcaggattg tttgctggac
      421 ttttaagtgc ggtaatttat ggatttttac ttaaatttaa tttagttttt tgggatataa
      481 atttaaaag
//
LOCUS       DAZBIH010000188          480 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.189, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000188 DAZBIH010000000
VERSION     DAZBIH010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.189"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            45..227
                     /locus_tag="ACHFOB_001721"
     CDS             45..227
                     /locus_tag="ACHFOB_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800491.1"
                     /translation="MKKVVLISALLGAFAANVFAANTPSDVNQTHTKAHHSKAKADKK
                     HEAKTHKKTKEQTPAQ"
     gene            complement(363..437)
                     /locus_tag="ACHFOB_001722"
     tRNA            complement(363..437)
                     /locus_tag="ACHFOB_001722"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(402..404),aa:Glu,seq:ttc)
BASE COUNT          207 a           76 c           69 g          128 t
ORIGIN      
        1 ttacaattaa tttgcaacta aaaattattc ataaggagga aaatatgaaa aaagttgtac
       61 taatctcagc attactaggt gctttcgcag ctaatgtttt tgcagctaat actccaagcg
      121 atgtgaatca aacacataca aaagctcatc attcaaaagc taaagctgat aaaaaacatg
      181 aagctaaaac tcacaaaaaa acaaaagagc aaacaccagc tcaataatgc ccagccttga
      241 tataagtcta taatagactt atatcaaaag ctattcgtat tctacaaaat aaattattaa
      301 tatttattaa atttcaatag aaaaaatgaa aaaattgtta ttttaaaaga aaaattaaaa
      361 agtggtgacc catacgagac tcgaactcgt gttaccgccg tgaaagggcg atgtcctaac
      421 cgctagacga atgggccact tttaaggagt aaaaaataaa aatgaaattg aattatatat
//
LOCUS       DAZBIH010000189          342 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.192, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000189 DAZBIH010000000
VERSION     DAZBIH010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.192"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            61..>342
                     /locus_tag="ACHFOB_001723"
     CDS             61..>342
                     /locus_tag="ACHFOB_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HFN5800492.1"
                     /translation="MLIIGHKLLKNLDFSFIESVEEVKDNKVYCIVYDEKLISYLSQN
                     DFEFAILVQNKDEIFLANALGAKFLLCNDKKLAKFASKVAEFYVFDSRVL"
BASE COUNT          131 a           19 c           54 g          138 t
ORIGIN      
        1 ttggtaacaa ttttataagt ataatttgca aaataataaa aaatagaact aaggaaaaaa
       61 atgcttatta ttggacataa attattaaaa aatttagatt tttcttttat tgaaagtgtt
      121 gaagaagtta aagataataa agtttattgt attgtttatg atgaaaaatt gatttcttat
      181 ttaagtcaaa atgattttga atttgctatt ttagttcaaa ataaagatga gatattttta
      241 gccaatgctt taggagctaa gtttttgctt tgtaatgata aaaaacttgc aaaatttgct
      301 agtaaggttg cagaatttta tgtttttgat agtagggttt ta
//
LOCUS       DAZBIH010000190          341 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.193, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000190 DAZBIH010000000
VERSION     DAZBIH010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 341)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.193"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>341
                     /locus_tag="ACHFOB_001724"
     CDS             <1..>341
                     /locus_tag="ACHFOB_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002852291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF2920 family protein"
                     /protein_id="HFN5800493.1"
                     /translation="KEHLIIQSLYPNPKYILYHSIFDERSPFKNKENFVHILKELNFK
                     VEFFAISQVDNKFIKNLNHGMGLSTKLFFKKHLLQILKEPLQDKICKKEVSYKCDELV
                     YTFKEENHQII"
BASE COUNT          148 a           34 c           40 g          119 t
ORIGIN      
        1 caaagaacat ctaataatac aaagcttata cccaaatcca aaatatattt tatatcatag
       61 tatttttgat gaaagatctc cttttaaaaa taaggaaaat tttgtacata ttttaaaaga
      121 attaaatttt aaagtagaat tttttgctat ttcacaagtt gataataagt ttattaaaaa
      181 tttaaatcat ggaatgggat tgagcacaaa attatttttt aaaaaacatt tattgcaaat
      241 attaaaagaa cctttgcaag ataaaatttg caagaaggaa gtctcatata aatgtgatga
      301 gctagtgtat actttcaaag aagaaaatca tcaaattatt t
//
LOCUS       DAZBIH010000191          326 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.194, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000191 DAZBIH010000000
VERSION     DAZBIH010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 326)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.194"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..>326
                     /locus_tag="ACHFOB_001725"
     CDS             <1..>326
                     /locus_tag="ACHFOB_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012006751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellin hook IN motif-containing protein"
                     /protein_id="HFN5800494.1"
                     /translation="TNQEFQIGASSNQTIKATIGATQSSKIGVTRFETGAQSFTSGVV
                     GLTIKNYNGIEDFKFDNVVISTSVGTGLGALAEEINKSADKTGVRATYDVKTTGVYAI
                     KEGTTS"
BASE COUNT          115 a           56 c           63 g           92 t
ORIGIN      
        1 accaatcaag aattccaaat cggcgcaagt tcaaaccaaa ctataaaagc aactatcggt
       61 gctactcaat cttctaaaat cggtgttaca agatttgaaa ccggtgctca aagttttact
      121 tcaggtgtgg ttggtcttac tattaaaaac tacaatggta tagaagattt taaatttgat
      181 aatgttgtga tttcaacttc agttggaaca ggacttggag ctttggctga agagatcaat
      241 aaaagcgctg ataaaacagg agttcgcgca acttacgatg taaaaacaac tggcgtttat
      301 gctataaaag aaggaactac ttctca
//
LOCUS       DAZBIH010000192          315 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.denovo.195, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000192 DAZBIH010000000
VERSION     DAZBIH010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 315)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.denovo.195"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..315
                     /locus_tag="ACHFOB_001726"
     CDS             <1..315
                     /locus_tag="ACHFOB_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002344437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HFN5800495.1"
                     /translation="QLFEYCGREFLSVNEMSNFAKLDLATFSKEFKKCFGQSPKKWLD
                     EKRLQKAKILLKFSKKNINEIANECAFSSVAWFIERFKEKYEQTPKQYQKTKNLYFLS
                     KN"
BASE COUNT          129 a           32 c           50 g          104 t
ORIGIN      
        1 caactttttg agtattgtgg tagagaattt ttaagcgtaa atgaaatgtc taattttgcg
       61 aaattagatt tagcaacttt ttctaaagaa tttaagaaat gttttggaca aagtcctaaa
      121 aaatggttag atgaaaaaag gttgcaaaaa gcaaagattt tacttaaatt ttctaaaaaa
      181 aatatcaatg aaatagctaa tgagtgcgct ttttcttcgg tagcttggtt tattgaaaga
      241 tttaaagaga aatatgagca aactcctaag caatatcaaa aaacaaaaaa cttgtatttt
      301 ttatcaaaaa actag
//
LOCUS       DAZBIH010000193        10989 bp    DNA     linear   BCT 21-OCT-2024
DEFINITION  TPA_asm: Campylobacter jejuni isolate Campylobacter jejuni
            SAMEA112867056-rid22965523.guided.047, whole genome shotgun
            sequence.
ACCESSION   DAZBIH010000193 DAZBIH010000000
VERSION     DAZBIH010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMEA112867056
            Sequence Read Archive: ERR11203767
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Campylobacter jejuni
  ORGANISM  Campylobacter jejuni
            Bacteria; Campylobacterota; Epsilonproteobacteria;
            Campylobacterales; Campylobacteraceae; Campylobacter.
REFERENCE   1  (bases 1 to 10989)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10989)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (23-AUG-2024) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 23-AUG-2024
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002335985.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002335985.1
            Genome Coverage       :: 124x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 10/21/2024 07:27:44
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Annotation Software revision      :: 2024-07-18.build7555
            Genes (total)                     :: 1,736
            CDSs (total)                      :: 1,696
            Genes (coding)                    :: 1,655
            CDSs (with protein)               :: 1,655
            Genes (RNA)                       :: 40
            rRNAs                             :: 1, 1, 1 (5S, 16S, 23S)
            complete rRNAs                    :: 1, 1 (16S, 23S)
            partial rRNAs                     :: 1 (5S)
            tRNAs                             :: 34
            ncRNAs                            :: 3
            Pseudo Genes (total)              :: 41
            CDSs (without protein)            :: 41
            Pseudo Genes (ambiguous residues) :: 0 of 41
            Pseudo Genes (frameshifted)       :: 34 of 41
            Pseudo Genes (incomplete)         :: 5 of 41
            Pseudo Genes (internal stop)      :: 9 of 41
            Pseudo Genes (multiple problems)  :: 6 of 41
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10989
                     /organism="Campylobacter jejuni"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMEA112867056-rid22965523.guided.047"
                     /isolate="Campylobacter jejuni"
                     /isolation_source="Chicken caeca"
                     /host="Gallus gallus"
                     /db_xref="taxon:197"
                     /geo_loc_name="Sweden"
                     /collection_date="2020"
                     /collected_by="National Veterinary Institute in Sweden
                     (SVA)"
     gene            <1..84
                     /locus_tag="ACHFOB_001727"
     CDS             <1..84
                     /locus_tag="ACHFOB_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HFN5800496.1"
                     /translation="LKNKKEQKEHVEFVVNVFLNGINSSKA"
     gene            179..1282
                     /gene="cmeA"
                     /locus_tag="ACHFOB_001728"
     CDS             179..1282
                     /gene="cmeA"
                     /locus_tag="ACHFOB_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter periplasmic
                     adaptor subunit CmeA"
                     /protein_id="HFN5800497.1"
                     /translation="MKLFQKNTILALGVVLLLAACSKEEAPKIQMPPQPVTTMSAKSE
                     DLPLSFTYPAKLVSDYDVIIKPQVSGVIVNKLFKAGDKVKKGQTLFIIEQDKFKASVD
                     SAYGQALMAKATFENASKDFNRSKALFSKSAISQKEYDSSLATFNNSKASLASARAQL
                     ANARIDLDHTEIKAPFDGTIGDALVNIGDYVSASTTELVRVTNLNPIYADFFISDTDK
                     LNLVRNTQSGKWDLDSIHANLNLNGETVQGKLYFIDSVIDANSGTVKAKAVFDNNNST
                     LLPGAFATITSEGFIQKNGFKVPQIGVKQDQNDVYVLLVKNGKVEKSSVHISYQNNEY
                     AIIDKGLQNGDKIILDNFKKIQVGSEVKEIGAQ"
     gene            1282..4404
                     /gene="cmeB"
                     /locus_tag="ACHFOB_001729"
     CDS             1282..4404
                     /gene="cmeB"
                     /locus_tag="ACHFOB_001729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux RND transporter permease
                     subunit CmeB"
                     /protein_id="HFN5800498.1"
                     /translation="MFSKFFIERPVFASVVAIIISLAGAIGLTNLPIEQYPSLTPPTV
                     KVSATYTGADAQTIASTVASPIEDAINGADNMIYMDSTSSSSGTMSLTVYFDIGTDPD
                     QATIDVNNRISAATAKMPDAVKKLGVTVRKTSSTTLAAISMYSSDGSMSAVDVYNYIT
                     LNVLDELKRVPGVGDANAIGNRNYSLRIWLKPDLLNKFGITATDVISAVNDQNAQYAT
                     GKIGEEPVTQKSPYVYSITMQGRLQNPSEFENIILRTNNDGSFLRLKDVADVEIGSQQ
                     YSSQGRLNGNDAVPIMINLQSGANALHTAELVQAKMQELSKNFPKGLTYKIPYDTTKF
                     VIESIKEVVKTFVEALILVIIVMYMFLKNFRATLIPMIAVPVSLLGTFAGLYVLGFSI
                     NLLTLFALILAIGIVVDDAIIVVENIDRILHENEQISVKDAAIQAMQEVSSPVISIVL
                     VLCAVFVPVSFISGFVGEIQRQFALTLAISVTISGFVALTLTPSLCALFLRRNEGEPF
                     KFVKKFNDFFDWSTSVFSAGVAYILKRTIRFVLIFCIMLGAIFYLYKAVPNSLVPEED
                     QGLMISIINLPSASALHRTISEVDHISQEVLKTNGVKDAMAMIGFDLFTSSLKENAAA
                     MFIGLQDWKDRNVSADQIIAELNKKFAFDRNASSVFIGLPPIPGLSITGGFEMYVQNK
                     SGKSYDEIQKDVNKLVAAANQRKELSRVRTTLDTTFPQYKLIIDRDKLKHYNLNMQDV
                     FNTMNATIGTYYVNDFSMLGKNFQVNIRAKGDFRNTQDALKNIFVRSNDGKMIPLDSF
                     LTLQRSSGPDDVKRFNLFPAAQVQGQPAPGYTSGQAIEAIAQVAKETLGDDYSIAWSG
                     SAYQEVSSKGTASYAFALGMIFVFLILAAQYERWLIPLAVVTAVPFAVFGSFLLVYLR
                     GFSNDIYFQTGLLLLIGLSAKNAILIVEFAMEERFKKGKGVFEAAVAAAKLRFRPIIM
                     TSLAFTFGVLPMIFATGAGSASRHSLGTGLIGGMIAASTLAIFFVPLFFYLLENFNEW
                     LDKKRGKVHE"
     gene            4397..5875
                     /gene="cmeC"
                     /locus_tag="ACHFOB_001730"
     CDS             4397..5875
                     /gene="cmeC"
                     /locus_tag="ACHFOB_001730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux transporter outer membrane
                     subunit CmeC"
                     /protein_id="HFN5800499.1"
                     /translation="MNKIISISAIASFTLLISACSLSPNLNIPEANYSIDNKLGALSW
                     EKENNSSITKNWWKDFDDENLNKVVDLALKNNNDLKLAFIHMEQAAAQLGIDFSSLLP
                     KFDGSASGSRAKTAINAPSNRTGEVSYGNDFKMGLNLSYEIDLWGKYRDTYRASKSGF
                     KASEYDYEAARLSVISNTVQTYFNLVNAYENENALKEAYESAKEIYRINDEKFQVGAV
                     GEYELAQARANLESMALQYNEAKLNKENYLKALKILTSNDLNDILYKNQSYQVFNLKE
                     FDIPTGISSTILLQRPDIGSSLEKLTQQNYLVGVARTAFLPSLSLTGLLGFESGDLDT
                     LVKGGSKTWNIGGNFTLPIFHWGEIYQNVNLAKLNKDEAFVNYQNTLITAFGEIRYAL
                     VARKTIRLQYDNAQASEQSYKRIYEIAKERYDIGEMSLQDYLEARQNWLNAAVAFNNI
                     KYSYANSIVDVIKAFGGGFEQSEDTSKNIKEESKNLDMSFRE"
     gene            complement(5898..6149)
                     /gene="cmeU"
                     /locus_tag="ACHFOB_001731"
     CDS             complement(5898..6149)
                     /gene="cmeU"
                     /locus_tag="ACHFOB_001731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CmeU family protein"
                     /protein_id="HFN5800500.1"
                     /translation="MDKAKIVQNLNALFKQRAEFYSYFDENIAKINNTEVFDFKNAKN
                     LNPEEVYKQFYHFDYAIRKLLPAIYKAYEITDADLDKDF"
     gene            6278..7624
                     /gene="hemN"
                     /locus_tag="ACHFOB_001732"
     CDS             6278..7624
                     /gene="hemN"
                     /locus_tag="ACHFOB_001732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coproporphyrinogen III oxidase family protein"
                     /protein_id="HFN5800501.1"
                     /translation="MNLFQNLALKYSHTMMEKSLQKGFNVELLKQPEEKIPKQDKSYM
                     LYAHVPFCHTFCPYCSFHKYYYDENLAKVYFQNLREEIKIMKDKGFDFTSMYVGGGTT
                     LINEEELLKTLELCKKLFNIKEISCESDPNHIDPNKLSMFKGIIDRLSCGIQSFDDET
                     LKKVARYNKFGSSKELQEKISKALGILPIFSIDLIFNLPGQSEKQLLNDLEIAKNLAP
                     QQITTYPLMKSNLTKDNIAKSLGVSIKDNEFAYYQIICEFFKDYTQNNGWSFSLEKNK
                     LNDEYVSSHHEYLGVGSGAFSFLDGELLINAFNLNDYAKFIQEKQNANIAKACFDKKE
                     IIKYVFLTEIFSGKIEIDKFNKTLNCNLEKELFIELLGLKTSGAIIKDQNALIATEFG
                     QYLFVVLMKDFYTGMDLVRAVFRDDKRLKNKDYIDIMKENIDPLNSASMEFKAETN"
     gene            complement(7621..8073)
                     /gene="hemJ"
                     /locus_tag="ACHFOB_001733"
     CDS             complement(7621..8073)
                     /gene="hemJ"
                     /locus_tag="ACHFOB_001733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase HemJ"
                     /protein_id="HFN5800502.1"
                     /translation="MTEWINDYYFWIKWVHYLAFVSWMAGLFYLPRLFVYHAEHKDNK
                     GFVEIVKIQERKLYFYIQTPAMIVTLITGSLMLHAHKEVLMVGAGFMHVKLTCVTLLI
                     IFHIHNYYCLKALANDTSTKSGKYFRIYNEFPTIMFIIIALMMVVRPF"
     gene            complement(8057..8527)
                     /gene="lspA"
                     /locus_tag="ACHFOB_001734"
     CDS             complement(8057..8527)
                     /gene="lspA"
                     /locus_tag="ACHFOB_001734"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0004190 - aspartic-type endopeptidase
                     activity [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HFN5800503.1"
                     /translation="MAKTFKFIFYFWGAFVLVFALDQWVKSLTLAGLRWQSEYLDLTY
                     ALNTGVAFSMLSFLEHNLKYLHLALIVVLFIYLFWQKTLLKTHSIAFGMMLGAGVSNL
                     LDRFIHGGVVDMFFWHKWFNFAIFNVADVMINISVALILIQEIFKKRKKDDRMD"
     gene            complement(8520..9857)
                     /gene="glmM"
                     /locus_tag="ACHFOB_001735"
     CDS             complement(8520..9857)
                     /gene="glmM"
                     /locus_tag="ACHFOB_001735"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HFN5800504.1"
                     /translation="MKLFGTDGVRGKAGEFLDSFLAMRLAMAAGIYFKDKSITNNILV
                     GKDTRRSGYMIENAIVSGLTSIGYNVIQIGPMPTPAIAFLTEDMRCDAGIMISASHNP
                     YYDNGIKFFDAHGNKLSEDIEKKIEEIYFDDKLIQASKVDMEKIGQAKRIDDVIGRYI
                     VSIKNSFPKDLTLKSLRVVLDVAHGAAYKVAPTVFKELGAEVIVMSDKPNGLNINENC
                     GALHPANLAAEVKRLRADVGFAFDGDADRLVVVDEKGEVANGDSLLGVLALYLKEQGK
                     LQSSVVATIMSNGALKEFLNKHGIELDTCNVGDKYVLEKLKANGGNFGGEQSGHIIFS
                     DYAKTGDGLIAALQFSALMLSKKKSASSILGQVKPYPQLLTNLKIAEKKDLDKIKGLK
                     ELKKDLENKNINTLFRYSGTENLIRLLLEAKDIKLLEKEMKNVVEFFKKALNG"
     gene            complement(9951..10976)
                     /locus_tag="ACHFOB_001736"
     CDS             complement(9951..10976)
                     /locus_tag="ACHFOB_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_002343796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome-c peroxidase"
                     /protein_id="HFN5800505.1"
                     /translation="MKVKSLLIASLVAFSSLNAASLIDEAKNSGLVALPKDQKGVDEI
                     LKQNGVKASEFTLEKAELGKKLYFEPRLSKSGIISCNTCHNVGLGGTDGISTAIGHKW
                     TANPHHLNSPTVYNAVLNNTQFWDGRAGTLADQAKGPIQADPEMATPAKLAVEKISSL
                     PEYVSEFKKIYGKSGVNFDNIADAIANFERTLITPSRFDKFLEGDEKALTKEEQKGLK
                     LFIDKGCVACHNGVNLGGNMQAFEVAGKYKFANLGDFKGDANGMVKTPTLRNVAETAP
                     YFHNGAIWNLKDAIKEMGSVQLGIKISDKEAKSIETFLKSLTGTKPAIVYPQLPISTE
                     KTPKPEL"
BASE COUNT         3915 a         1776 c         1670 g         3628 t
ORIGIN      
        1 ttgaaaaata aaaaagaaca aaaagaacat gttgaatttg ttgtaaatgt ttttctaaat
       61 ggaatcaata gctccaaagc ttaaaaaata attttattaa ccaaaattaa gatataatta
      121 gccaaaaatt tctgtaataa atattacaat ttttaattta atttttcaag gcaaaaccat
      181 gaaattattt caaaaaaata ctattttagc tttaggtgtt gtgcttttac tcgctgcttg
      241 cagcaaagaa gaagcaccaa aaatacaaat gccgcctcaa cctgtaacaa ccatgagtgc
      301 taaatctgaa gatttaccac ttagttttac ttaccctgct aaacttgtca gtgattatga
      361 tgtcattata aaacctcaag ttagcggcgt aatagtaaat aaacttttta aagctggaga
      421 taaggtaaaa aaaggacaaa cattatttat tatagaacaa gataaattta aagctagtgt
      481 tgattcagct tacggacaag ctttaatggc taaggcaact ttcgaaaatg caagcaagga
      541 ttttaatcgt tctaaagctc tttttagcaa aagtgcaatc tctcaaaaag aatacgactc
      601 ttctcttgct acatttaaca attcaaaagc tagtctagca agtgctagag cacagcttgc
      661 aaatgcaaga attgatctag atcataccga gataaaagct ccttttgatg gtactatagg
      721 agatgcttta gttaatatag gagattatgt aagtgcttca acaactgaac tagttagagt
      781 tacaaattta aatcctattt acgcagattt ctttatttca gatacagata aactaaattt
      841 agtccgcaat actcaaagtg gaaaatggga tttagacagc attcatgcaa atttaaatct
      901 taatggagaa accgttcaag gcaaacttta ttttattgat tcggttatag atgctaatag
      961 tggaacagta aaagccaaag ccgtatttga taacaataac tcaacacttt taccgggtgc
     1021 ttttgcaaca attacttcag aaggttttat acaaaaaaat ggctttaaag tgcctcaaat
     1081 aggtgttaaa caagatcaaa atgatgttta tgttcttctt gttaaaaatg gaaaagtaga
     1141 aaaatcttct gtacatataa gctaccaaaa caatgaatac gccattattg acaaaggatt
     1201 gcaaaatggc gataaaatca ttttagataa ctttaaaaaa attcaagttg gtagcgaagt
     1261 taaagaaatt ggagcacaat aatgttttct aaatttttta tcgaaagacc tgtttttgct
     1321 tcagttgttg caattatcat ttctttagct ggagccatag gtcttacaaa tttacctata
     1381 gaacaatatc cttctttaac ccctcctaca gttaaagtaa gtgcaactta cacaggagct
     1441 gatgcacaaa ccattgcttc aacagttgca agtcctatcg aagatgcaat caatggcgca
     1501 gataatatga tttacatgga ttcaacttca agttcttcag gaactatgag tttgactgtt
     1561 tattttgata tcggtacaga tcctgatcaa gccaccatag atgttaataa tagaatttca
     1621 gccgcaactg caaaaatgcc agatgcagtt aaaaaacttg gagtaacagt tagaaaaact
     1681 tcctcaacaa cacttgctgc aatttctatg tattcaagtg atggctcaat gagtgcagta
     1741 gatgtatata actatatcac tttaaatgtt ttagatgagt taaaaagggt tccaggagtt
     1801 ggagatgcaa acgctatagg aaatcgtaat tattctttaa gaatttggct caagcctgat
     1861 ttattaaata aatttggaat cacagctact gatgtaattt ctgcggttaa tgaccaaaat
     1921 gcccaatacg caactggtaa aattggcgaa gaacctgtaa cccaaaaatc cccttatgtt
     1981 tattcaatca ctatgcaagg aagactacaa aatcctagtg aatttgaaaa cattatttta
     2041 agaacaaata atgatggatc atttttaaga cttaaagatg tagctgatgt ggaaatagga
     2101 tcacaacaat acagctcaca aggacgatta aatggcaatg atgcagttcc aattatgatt
     2161 aatcttcaat caggggcaaa cgcattgcat acagcagaac ttgttcaagc taaaatgcaa
     2221 gaactttcaa aaaattttcc aaaaggttta acatataaaa ttccttacga tacaacaaaa
     2281 tttgtaatag aatcaatcaa agaagttgtt aaaacttttg ttgaagctct aattttagtt
     2341 atcattgtta tgtatatgtt cttaaagaat ttccgtgcaa cacttattcc tatgatagct
     2401 gtacctgttt cattgttagg aacttttgct ggactttatg ttttaggttt tagtattaac
     2461 ttgcttacgc tttttgcttt aattttagcc atagggatcg ttgtagatga tgcgattata
     2521 gttgtagaaa atattgatag gattttacat gaaaatgagc aaataagcgt aaaagatgct
     2581 gctatccaag cgatgcaaga agttagctct ccggttattt caattgttct tgtgctttgt
     2641 gctgtttttg taccagtttc ttttatatca ggttttgttg gagagattca aagacaattt
     2701 gctcttacct tagctatatc tgtaaccata tcaggttttg ttgctcttac cttaacacct
     2761 tctttatgtg cactcttttt gcgacgcaat gaaggagagc catttaaatt tgtaaagaaa
     2821 tttaatgatt tttttgattg gagtacctct gtatttagcg caggagtagc atatatccta
     2881 aaaagaacca ttcgttttgt tttaattttt tgtattatgc ttggagcaat tttttatctc
     2941 tataaagcag taccaaattc tttagttcct gaagaagatc aaggtttgat gattagcatt
     3001 attaatcttc cttcagcttc agcactccat agaacaattt cagaggttga tcacataagc
     3061 caagaagttt taaaaactaa tggagttaaa gatgcaatgg ctatgatagg atttgatctt
     3121 tttacaagtt cactcaaaga aaatgccgct gcaatgttta taggtttgca agattggaaa
     3181 gatagaaatg taagcgctga tcaaattata gccgaactta ataaaaaatt tgcttttgat
     3241 cgcaatgctt caagtgtatt tataggctta cctcccatac ctggattaag tatcacaggc
     3301 ggttttgaaa tgtatgttca aaacaaaagc ggaaaaagct atgatgaaat acaaaaagat
     3361 gtaaataaac ttgttgctgc ggccaaccaa agaaaagaac tatcaagagt aagaacaaca
     3421 cttgatacaa ctttccctca atacaagctt ataattgata gagataaatt aaaacactac
     3481 aatcttaaca tgcaagatgt ttttaacacg atgaatgcaa ctataggcac ttattatgtt
     3541 aatgattttt ctatgctagg taaaaacttc caagtaaata tccgcgcaaa aggtgatttt
     3601 agaaatacac aagatgcatt aaaaaatatt tttgtaagat caaatgatgg aaaaatgata
     3661 ccacttgatt ctttcttaac tttacaaaga agttcagggc ctgatgatgt aaaacgattc
     3721 aaccttttcc cagcggcaca agttcaaggt caacccgcac caggttatac ttcaggtcaa
     3781 gctatagaag cgattgctca agtagcaaaa gaaactttag gggatgatta ttccatagct
     3841 tggagtggat cagcttatca agaagtttct agtaaaggaa cagcaagcta tgcttttgct
     3901 ttaggtatga tatttgtctt tttaattcta gctgcccaat atgaaagatg gcttatacct
     3961 ttagcagttg taacagctgt accttttgcg gtatttggat catttttatt ggtatattta
     4021 aggggattta gcaatgacat atattttcaa acaggacttt tgctcttgat tggactttca
     4081 gctaaaaatg ctatcttaat cgtagaattt gcaatggaag agcgctttaa aaaaggcaaa
     4141 ggagtttttg aagcagctgt tgcagcagca aaacttcgtt ttcgtcctat cataatgact
     4201 tctttggcat ttacttttgg ggtcttgcca atgattttcg caacaggagc aggaagtgct
     4261 tcaagacact ctttaggaac agggcttatt ggtggaatga tcgcagcatc aactttagcg
     4321 atattctttg tgcctttatt tttctatctt ttagaaaatt ttaatgaatg gctagataaa
     4381 aaaagaggta aggttcatga ataaaataat ttcaattagt gctatagcaa gttttactct
     4441 tttgatttca gcttgctctt taagtccaaa tttaaatatt cccgaagcaa actatagcat
     4501 tgataataag cttggagcct tatcttggga aaaagaaaac aatagctcta tcacaaaaaa
     4561 ttggtggaaa gactttgatg atgaaaattt aaataaagtg gttgatttag cacttaaaaa
     4621 taataatgat ttaaaacttg ctttcataca catggaacaa gctgctgctc aattaggtat
     4681 agattttagc agtttgttgc caaaatttga tggtagcgca agcggaagtc gtgcaaaaac
     4741 agctataaat gctccaagca atcgaactgg ggaagtaagt tacggtaatg attttaaaat
     4801 gggacttaat ttaagctatg aaatcgatct ttggggaaaa tatcgcgata catatcgcgc
     4861 ctcaaaatca ggctttaaag caagtgagta tgattatgaa gctgcaagac tttctgttat
     4921 ttcaaataca gttcaaactt attttaatct tgtaaatgct tatgaaaatg aaaatgctct
     4981 taaagaagct tatgaatctg caaaagaaat ttataggatt aatgatgaaa aatttcaagt
     5041 tggcgctgta ggtgaatatg aacttgctca agcaagagcc aacttagaaa gtatggcttt
     5101 gcaatataat gaagcaaagt taaataaaga aaattacctt aaagctttaa aaattttaac
     5161 ttcaaatgat ttaaatgaca tactttacaa aaatcaaagc tatcaagttt ttaatcttaa
     5221 agaatttgac attccaactg gaatttcaag taccatcttg cttcaacgtc cagatattgg
     5281 ctcttcttta gaaaaattaa ctcagcaaaa ttatcttgtt ggagtagctc gcacggcttt
     5341 cttacctagc ctttctttaa caggattatt gggatttgaa agcggggatt tagatacctt
     5401 ggttaaagga ggttctaaga cttggaatat aggtggaaac tttactctgc ctatttttca
     5461 ttggggtgaa atttaccaaa atgtaaattt agccaagctt aataaagatg aagcttttgt
     5521 aaattatcaa aatactttga ttactgcttt tggagaaatt cgctatgctt tagtagctag
     5581 aaaaactata cgcttacaat acgataatgc acaagcaagc gaacaatctt acaaaagaat
     5641 ctatgaaatt gctaaagaac gctatgatat aggagaaatg tctttgcaag attatttaga
     5701 ggcacgtcaa aattggctta atgctgcggt tgcttttaat aatattaaat attcttatgc
     5761 caattccata gtagatgtaa tcaaagcatt tggtggagga tttgagcaaa gtgaagatac
     5821 gagtaaaaat ataaaagaag aatcaaaaaa tttagatatg tcttttagag aatagtttgt
     5881 tctattctct aaataaatta aaaatctttg tctaaatctg catctgtaat ttcataagcc
     5941 ttgtaaatag caggcaataa ttttcttata gcataatcaa aatgataaaa ttgcttatat
     6001 acctcttctg gatttaaatt tttagcattc ttaaaatcaa atacttcagt attattgatt
     6061 ttggcaatat tttcatcaaa ataagagtaa aactctgctc tttgtttaaa caaagcattt
     6121 aaattttgaa caattttggc tttatccatt tttatatcct ttttaaataa tttaaaaact
     6181 taatcccatt ttttatttaa gaaataaaaa atttactcct attttagcta aaaattgata
     6241 aagttatgtc ttaaatattt taatatatag gccacttatg aatttatttc aaaatttagc
     6301 tttaaaatac tctcatacta tgatggaaaa atccctccaa aaaggtttca atgtcgaact
     6361 tttaaaacaa cccgaagaaa aaattccaaa acaagacaaa agctatatgc tttatgccca
     6421 tgtacctttt tgccatactt tttgtcctta ttgtagcttt cataaatatt attatgatga
     6481 aaatttagcc aaagtatatt ttcaaaatct tagagaagaa attaaaatca tgaaagataa
     6541 aggttttgat tttacctcca tgtatgtggg tggtggtaca acactgatta atgaagagga
     6601 attattaaaa accttagaac tttgtaaaaa attatttaat ataaaagaaa tttcatgcga
     6661 aagcgatcca aatcatattg atccaaataa actttctatg tttaaaggta taatcgatcg
     6721 tttaagttgt gggattcaaa gttttgatga tgaaacttta aaaaaagtgg caagatacaa
     6781 taaatttggt tcatctaaag aacttcaaga aaaaatttca aaagctttag gaattttgcc
     6841 tatttttagc atagatctta ttttcaatct tccaggacaa agtgaaaaac aacttttaaa
     6901 tgacttagaa attgctaaaa atttagcccc acaacaaatt acaacctatc ctttaatgaa
     6961 atcaaatctc accaaagaca atatcgctaa aagtctaggt gtaagcatta aagataatga
     7021 atttgcttat tatcaaatca tatgcgaatt ttttaaagac tatacccaaa acaatggttg
     7081 gagtttttct ttagaaaaaa acaagcttaa tgacgaatat gttagttctc atcatgaata
     7141 tctaggagta ggtagtggag cttttagctt tttagatggg gagcttttaa ttaatgcatt
     7201 taatctaaat gattatgcta aatttataca agaaaaacaa aatgctaata tagccaaagc
     7261 ttgttttgat aaaaaagaga ttatcaaata tgtcttttta actgaaattt tttcagggaa
     7321 aatagaaatt gataaattca acaaaactct aaattgcaac ctcgaaaaag aacttttcat
     7381 agaactttta gggcttaaaa caagtggtgc catcataaaa gatcaaaatg ctttaatcgc
     7441 aactgaattt ggtcaatatc tttttgtggt tttaatgaaa gatttttaca caggaatgga
     7501 tcttgtgcgt gcagtattta gagatgataa gcgtcttaaa aataaagatt atatcgatat
     7561 catgaaagaa aatattgatc cgcttaactc cgctagtatg gaatttaaag cggagacaaa
     7621 ctaaaaggga cgaacaacca tcattaaagc gataataata aacattatag tcggaaattc
     7681 attataaatt ctaaagtatt tcccactttt agtagaagta tcatttgcta aagcttttaa
     7741 acaataataa ttatgtatat gaaaaataat caaaagtgta acacaggtaa gtttaacatg
     7801 cataaaaccc gcacctacca ttaaaacttc cttatgagca tgtaacatta aacttcctgt
     7861 gattaaagtt acaatcattg caggagtttg tatataaaaa taaagttttc tttcttgaat
     7921 ttttacaatc tcgacaaaac ctttattgtc tttatgttca gcatgataca caaaaagacg
     7981 aggtaaataa aaaagacccg ccatccaaga aacaaatgcc aaataatgca cccatttaat
     8041 ccaaaaataa taatcattaa tccattctgt catctttttt ccttttttta aatatttctt
     8101 gtattaaaat caaagccaca cttatattta tcatgacatc tgcaacatta aaaatagcaa
     8161 aattaaacca tttatgccaa aaaaacatat ccactacacc tccatgtata aaacgatcca
     8221 ataaatttga aacgccagca ccaagcatca ttccaaaagc tatgctatga gtttttaaaa
     8281 gtgttttttg ccaaaaaaga taaataaaaa gcacgacaat taaagcaaga tgtaaatatt
     8341 ttaaattatg ttctaaaaaa ctcaacattg aaaaagctac gcctgtattt agagcataag
     8401 ttaaatctaa gtattcactc tgccatctaa gtcctgctaa agttaaggat ttcacccatt
     8461 gatcaagggc aaaaaccaaa acaaaggcac cccaaaaata aaaaataaat ttaaaagttt
     8521 tagccattta aagctttctt aaaaaactcc acaacatttt tcatttcttt ttctaagagc
     8581 ttaatatctt tggcttctag taaaagtctt atcaaatttt ctgttccaga atagcgaaat
     8641 aaggtattga tatttttatt ttctaaatct ttttttaatt cttttaaacc tttaatttta
     8701 tctaaatctt ttttttctgc aattttaaga ttggttaaaa gctgaggata aggtttgact
     8761 tgacccaaaa tagagcttgc agattttttc ttggaaagca ttaaagcact aaattgcaaa
     8821 gcagctatca aaccatctcc agtttttgca taatcactaa aaataatatg cccactttgc
     8881 tctccaccaa aatttccacc attagctttt aatttttcaa gcacatattt atcgcccaca
     8941 ttacaagtat caagttctat accatgttta tttaaaaatt cttttaaagc accattactc
     9001 attatagtgg ctacaacact tgattgtaat ttaccttgtt ctttaagata aagtgctaaa
     9061 actcctaata aactatctcc attagccact tcgccttttt catctacaac caccaaacga
     9121 tctgcatcac catcaaaagc aaagcccaca tctgcacgca aacgctttac ctcagcagct
     9181 aaatttgcag gatgtaaagc tccacaattt tcattgatat taagtccatt aggtttatcg
     9241 ctcattacta taacttcagc acctaattcc ttaaaaacag taggtgctac cttataagct
     9301 gccccatgag ccacatctaa aaccacacgc aaagacttta aagtaagatc ttttggaaaa
     9361 gaatttttaa tagaaacaat ataccttcct ataacatcat caattctttt tgcttgacca
     9421 attttttcca tatctacctt agaggcttgt ataagcttat catcaaaata aatttcttct
     9481 atttttttct ctatatcttc actaagtttg tttccatgag catcaaaaaa tttaatacca
     9541 ttatcataat aaggattgtg agaagctgaa atcataatcc ctgcgtcaca acgcatatct
     9601 tcagttaaga atgcaatcgc aggagttggc ataggaccaa tttgtataac attatatcct
     9661 atagaagtaa gccctgaaac aatagcattt tctatcatat agccgcttct tcttgtatct
     9721 tttcctacta agatattatt agtaatactt ttatctttaa aataaatacc cgcagccatt
     9781 gctaaacgca tagccaaaaa actatctaaa aattcacccg cttttccacg aactccatca
     9841 gttccaaaaa gtttcattgc aaacctttct agcaaaattt aaagacaatt ataacaaagc
     9901 taagataaag aaatttaaac aagctctaaa aatagagctt gtttggaacc ttatagttca
     9961 ggtttaggag ttttttcagt agaaatagga agttgtggat aaacaattgc tggttttgtt
    10021 cctgttaaag attttaagaa agtttcaata ctttttgctt ctttatcaga aattttaatg
    10081 ccaagttgca cactacccat ttccttaata gcatctttta aattccaaat cgcaccatta
    10141 tgaaaatatg gagcagtttc agcaacattt cttaaagttg gagtttttac catgccattt
    10201 gcatcacctt taaaatcacc taaatttgca aatttatatt taccagcaac ttcaaacgct
    10261 tgcatattgc cacctaaatt cacaccatta tgacaagcta cacaaccttt atctataaaa
    10321 agctttaagc ctttttgttc ttcttttgtt aaagcttttt catcgccttc taaaaattta
    10381 tcaaaacgag atggagtgat caaagttctt tcaaaatttg caattgcatc agcaatattg
    10441 tcaaaattta caccgctttt accatagatt tttttaaact cactcacata ttcaggcaaa
    10501 gatgaaattt tttctactgc aagtttagca ggagttgcca tttcaggatc agcttggatt
    10561 ggacctttag cttgatcggc taatgttcct gcacgaccat cccaaaattg agtattattt
    10621 aagactgcat tataaactgt tggtgaattt aaatgatgag gatttgctgt ccatttatga
    10681 cctattgcgg tactgattcc atctgttcca ccaagtccta cattatgaca ggtattacaa
    10741 gaaatgatac cactttttga aagacgtggt tcaaaataga gctttttgcc aagctctgct
    10801 ttttcaagag taaattcact agcctttact ccattttgtt ttaaaatttc atcaacgcct
    10861 ttttgatctt ttggtaaggc aacaagacct gaatttttag cttcatctat aagacttgca
    10921 gcatttaagc ttgaaaaagc aactaaggat gcgattagca atgattttac tttcatttac
    10981 aaactccta
//
